Provided herein are novel proteins and protein domains from newly discovered anaerobic fungal species. The anaerobic fungal species have unique enzymatic capabilities, including the ability to digest diverse lignocellulosic biomass feedstocks and to synthesize secondary metabolites. The scope of the invention encompasses novel engineered proteins comprising glycoside hydrolase enzymes, dockerin domains, carbohydrate binding domains, and polyketide synthase enzymes. The invention further encompasses artificial cellulosomes comprising novel proteins and domains of the invention. The scope of the invention further includes novel nucleic acid sequences coding for the engineered proteins of the invention, and methods of using such engineered organisms to degrade lignocellulosic biomass and to create polyketides.

Provided herein are novel proteins and protein domains from newly discovered anaerobic fungal species. The anaerobic fungal species have unique enzymatic capabilities, including the ability to digest diverse lignocellulosic biomass feedstocks and to synthesize secondary metabolites. The scope of the invention encompasses novel engineered proteins comprising glycoside hydrolase enzymes, dockerin domains, carbohydrate binding domains, and polyketide synthase enzymes. The invention further encompasses artificial cellulosomes comprising novel proteins and domains of the invention. The scope of the invention further includes novel nucleic acid sequences coding for the engineered proteins of the invention, and methods of using such engineered organisms to degrade lignocellulosic biomass and to create polyketides.

The present invention relates to a method of production of a nutrient or a nutraceutical compound, a method for the generation of an improved nutrient-producing or nutraceutical compound-producing organism or community of organisms, and nutrient-producing or nutraceutical compound-producing organisms or communities of organisms.

The present invention relates to a method of production of a nutrient or a nutraceutical compound, a method for the generation of an improved nutrient-producing or nutraceutical compound-producing organism or community of organisms, and nutrient-producing or nutraceutical compound-producing organisms or communities of organisms.

Provided are bacterial strains, methods of culturing bacterial cells using synthetic quorum-regulated lysis, and uses thereof.

The process for producing organic molecules from fermentable biomass includes a step of anaerobic fermentation (5) producing volatile fatty acids (6), these precursors being transformed into final organic molecules by non-fermentation means. It also includes at least the following steps: a) extracting (9) at least one portion of the volatile fatty acids from the fermentation medium in such a way that the production of fermentation metabolites by the microorganisms (M) is not affected, and introducing a portion of the liquid phase (11) containing microorganisms from the extraction (9), b) synthesizing (13) organic molecules from the fermentation metabolites or from the volatile fatty acids extracted in step a)-c) continuing steps a) to b) until the final molecules are obtained, in terms of amount and quality. The invention also relates to an installation for implementing the process.

The process for producing organic molecules from fermentable biomass includes a step of anaerobic fermentation (5) producing volatile fatty acids (6), these precursors being transformed into final organic molecules by non-fermentation means. It also includes at least the following steps: a) extracting (9) at least one portion of the volatile fatty acids from the fermentation medium in such a way that the production of fermentation metabolites by the microorganisms (M) is not affected, and introducing a portion of the liquid phase (11) containing microorganisms from the extraction (9), b) synthesizing (13) organic molecules from the fermentation metabolites or from the volatile fatty acids extracted in step a)-c) continuing steps a) to b) until the final molecules are obtained, in terms of amount and quality. The invention also relates to an installation for implementing the process.

Disclosed herein is a method of microbial enhanced oil recovery by changing microbial motility, including: subjecting a viable Glycocaulis strain and the alkane-degrading Dietzia strain to contact culture to enable the alkane-degrading Dietzia strain to have motility. This application also provides a method for microbial enhanced oil recovery, including: subjecting a viable Glycocaulis strain and the alkane-degrading Dietzia strain to contact culture to enable the alkane-degrading Dietzia strain to have motility; and injecting the contact culture mixture of the viable Glycocaulis strain and the alkane-degrading Dietzia strain to an oil well to perform microbial enhanced oil recovery.

Provided herein are methods of producing carbon-based compounds from the fermentation of cellulosic feedstocks. In certain embodiments, the cellulosic feedstock and/or source of the cellulosic feedstock is grass, guar gum, leaves, cattails, and/or phragmites.

An object of the present invention is to a method for producing a functional substance utilizing a reaction requiring hydrogen, which production method is safe and efficient; and this object is achieved by a method for producing a functional substance utilizing a reaction requiring hydrogen, the method comprising: supplying the hydrogen by culturing of a hydrogen-producing microorganism.