Trusted, privacy-protected systems and methods are disclosed for processing, handling, and performing tests on human genomic and other information. According to some embodiments, a system is disclosed that is a cloud-based system for the trusted storage and analysis of genetic and other information. Some embodiments of the system may include or support some or all of authenticated and certified data sources; authenticated and certified diagnostic tests; and policy-based access to data.

Various approaches for generating read-sets from nucleic acid molecules and segments and phasing are disclosed. Nucleic acids are assembled into complexes using binding moieties and exposed nucleic acid ends are tagged with nucleic acid tags. Read-sets can be generated from tagged nucleic acid molecules and segments. Physical linkage relationships between nucleic acid molecules and segments can be examined using the nucleic acid tags. Various approaches to generating read-sets and phasing are presented.

Various approaches for generating read-sets from nucleic acid molecules and segments and phasing are disclosed. Nucleic acids are assembled into complexes using binding moieties and exposed nucleic acid ends are tagged with nucleic acid tags. Read-sets can be generated from tagged nucleic acid molecules and segments. Physical linkage relationships between nucleic acid molecules and segments can be examined using the nucleic acid tags. Various approaches to generating read-sets and phasing are presented.

Various methods and systems for processing at least some of genome sequences and at least some of associated information, for an individual, may include one or more of: segmenting genome sequences for at least a purpose of anonymizing genome information; using anchor segments for a purpose of minimizing electronic storage space in storing of genetic sequence information; generating at least one linkage record; generating at least one anonymized linkage record; processing a request for genetic study results; processing genetic study results received; and/or generating personalized information of interest pertaining to the individual. A purpose of such processing may be to prevent, minimize, and/or mitigate against (1) identification of the individual from such genome sequence information and/or from associated information; and/or (2) using such genome sequence information and/or associated information as a basis for discriminating against the individual.

Various methods and systems for processing at least some of genome sequences and at least some of associated information, for an individual, may include one or more of: segmenting genome sequences for at least a purpose of anonymizing genome information; using anchor segments for a purpose of minimizing electronic storage space in storing of genetic sequence information; generating at least one linkage record; generating at least one anonymized linkage record; processing a request for genetic study results; processing genetic study results received; and/or generating personalized information of interest pertaining to the individual. A purpose of such processing may be to prevent, minimize, and/or mitigate against (1) identification of the individual from such genome sequence information and/or from associated information; and/or (2) using such genome sequence information and/or associated information as a basis for discriminating against the individual.

A fluorescent in-situ hybridization imaging and analysis system includes a flow cell to contain a sample to be exposed to fluorescent probes in a reagent, a fluorescence microscope to obtain sequentially collect a plurality of images of the sample at a plurality of different combinations of imaging parameters, and a data processing system. The data processing system includes an online pre-processing system configured to sequentially receive the images from the fluorescence microscope as the images are collected and perform on-the-fly image pre-processing to remove experimental artifacts of the image and to provide RNA image spot sharpening, and an offline processing system configured to, after the plurality of images are collected, perform registration of images having a same field of view and to decode intensity values in the plurality of images to identify expressed genes.

Embodiments are directed toward facilitating securely and efficiently providing medical-test results. Some embodiments enable secure and efficient mass testing by eliminating the requirement that patients provide personally identifying information after collection of their first testing specimen. The system enables delivering test results to such patients without the patients providing personally identifying information with specimens to be tested. The first time that a patient requests a medical test on a specimen, values representative of biometric characteristic thereof are recorded with personal information for the patient. Some embodiments facilitate looking up the patient's personal information by using values representative of biometrics obtained from the patient's subsequent specimens to be medically tested. Some embodiments facilitate security by storing personal information and biometric identifiers in separate data stores and linking records in those data stores by way of an identifier that does not identify the patient.

Embodiments are directed toward facilitating securely and efficiently providing medical-test results. Some embodiments enable secure and efficient mass testing by eliminating the requirement that patients provide personally identifying information after collection of their first testing specimen. The system enables delivering test results to such patients without the patients providing personally identifying information with specimens to be tested. The first time that a patient requests a medical test on a specimen, values representative of biometric characteristic thereof are recorded with personal information for the patient. Some embodiments facilitate looking up the patient's personal information by using values representative of biometrics obtained from the patient's subsequent specimens to be medically tested. Some embodiments facilitate security by storing personal information and biometric identifiers in separate data stores and linking records in those data stores by way of an identifier that does not identify the patient.

The present invention provides a novel approach to matching personality traits, as determined through observational or self-assessment reporting in combination with specific loci and identifiable variations within an individual's nucleotide sequence in the form of SNPs. The present invention further utilizes an individual's cyber footprint, in combination with SNPs and traditional assessment and self-assessment techniques, to define a testing and reinforcement mechanism for strengthening the interdependence and accuracy of each type of reporting in order to bolster the reliability of each alone and in combination.

The present invention provides a novel approach to matching personality traits, as determined through observational or self-assessment reporting in combination with specific loci and identifiable variations within an individual's nucleotide sequence in the form of SNPs. The present invention further utilizes an individual's cyber footprint, in combination with SNPs and traditional assessment and self-assessment techniques, to define a testing and reinforcement mechanism for strengthening the interdependence and accuracy of each type of reporting in order to bolster the reliability of each alone and in combination.