A sample holder for use in an optical microscope is disclosed. The sample holder includes a plasmonic layer defining a periodic array of sub-micron structures wherein the periodic array of sub-micron structures comprise an array of separated plasmonic regions. The regions may be a circle, a torus, an ellipse, a cross, rectangle, square, line, strip. Methods of performing reflection and fluorescence microscopy using such a sample holder and other sample holders are also disclosed.

To provide a single particle capture technique that can shorten cell capture time without damaging a cell.

The present technology provides a particle capture device including: a particle capture unit having a particle capture region including a plurality of wells that captures particles, and dividing a space into a first space and a second space; a particle supply channel which is connected to the first space and through which a fluid containing the particles is supplied; a first discharge channel which is connected to the first space and through which a fluid is discharged from the first space; and a second discharge channel which is connected to the second space and through which a fluid is discharged from the second space, in which the particles are captured in the wells by simultaneous discharge of fluids from the first discharge channel and the second discharge channel.

To provide a single particle capture technique that can shorten cell capture time without damaging a cell.

The present technology provides a particle capture device including: a particle capture unit having a particle capture region including a plurality of wells that captures particles, and dividing a space into a first space and a second space; a particle supply channel which is connected to the first space and through which a fluid containing the particles is supplied; a first discharge channel which is connected to the first space and through which a fluid is discharged from the first space; and a second discharge channel which is connected to the second space and through which a fluid is discharged from the second space, in which the particles are captured in the wells by simultaneous discharge of fluids from the first discharge channel and the second discharge channel.

A method of analysis of a sample is described. The method includes providing a sample holder having an upper surface and a lower surface, the upper surface having a plasmonic layer associated therewith, the plasmonic layer including a periodic array of sub-micron structures. A sample is applied to the sample holder and illuminated. At least one localised structural property of the sample is visible in an image formed based on the colour of the received light. The method includes using the image formed to control a subsequent analysis process. The subsequent analysis process can be another microscopy process such as TEM, SEM or the like.

A method of analysis of a sample is described. The method includes providing a sample holder having an upper surface and a lower surface, the upper surface having a plasmonic layer associated therewith, the plasmonic layer including a periodic array of sub-micron structures. A sample is applied to the sample holder and illuminated. At least one localised structural property of the sample is visible in an image formed based on the colour of the received light. The method includes using the image formed to control a subsequent analysis process. The subsequent analysis process can be another microscopy process such as TEM, SEM or the like.

Automated liquid handling system for processing a plurality of samples in at least one microscope sample carrier, wherein the microscope sample carrier comprises a plurality of sample deposition wells, wherein each sample deposition well is defined on its lateral sides by one or more lateral walls and on its bottom side by a sample deposition surface, the automated liquid handling system comprising: a centrifuge adapted to centrifuge the microscope sample carrier; an automated transportation device adapted to transfer the plurality of samples and/or a plurality of liquids into and/or out of each of the plurality of sample deposition wells of the microscope sample carrier, and adapted for transporting the microscope sample carrier across the automated liquid handling system, wherein the automated transportation device is configured to couple with a coupling section of the microscope sample carrier; one or more storage containers for receiving and/or storing the plurality of samples and/or the plurality of liquids.

A method and system are disclosed for detecting microbial pathogens in a sample suspected of containing the pathogens. The method includes combining loop-mediated isothermal amplification (LAMP) reagents and a polymer gel, such as a hydrogel, together with the sample to form a mixture. The gel polymerizes over a short time to immobilize the viral particles within the mixture. If target DNA/RNA are present in the sample, amplicons are produced. The target microorganisms are detected by visually detecting the presence or absence of the amplicons. The target microorganism concentrations may be determined based on the number of fluorescent amplicon dots after the reaction using a smartphone or a fluorescent microscope. The method may be employed for rapidly and inexpensively quantifying microbial pathogens in environmental water samples with high sensitivity.

A method and system are disclosed for detecting microbial pathogens in a sample suspected of containing the pathogens. The method includes combining loop-mediated isothermal amplification (LAMP) reagents and a polymer gel, such as a hydrogel, together with the sample to form a mixture. The gel polymerizes over a short time to immobilize the viral particles within the mixture. If target DNA/RNA are present in the sample, amplicons are produced. The target microorganisms are detected by visually detecting the presence or absence of the amplicons. The target microorganism concentrations may be determined based on the number of fluorescent amplicon dots after the reaction using a smartphone or a fluorescent microscope. The method may be employed for rapidly and inexpensively quantifying microbial pathogens in environmental water samples with high sensitivity.

A system having a macroscopic imager, a microscopic imager, and a stage for moving a substrate supporting ex-vivo tissue with respect to each of the imagers to enable the macroscopic imager to capture macroscopic images, and the microscopic imager to capture optically formed sectional microscopic images on or within the tissue, when presented to the tissue, via the optically transparent material of the substrate. A computer system controls movement of the stage, and receives the macroscopic and microscopic images. A display is provided for displaying the macroscopic and microscopic images when received by the computer system. The tissue is verified as being in an orientation at least substantially flush against the upper surface of the substrate by being in focus in displayed macroscopic images prior to imaging by the microscopic imager, and if needed, any portion of the tissue unfocused is manually positioned until desired tissue orientation is achieved.

A system having a macroscopic imager, a microscopic imager, and a stage for moving a substrate supporting ex-vivo tissue with respect to each of the imagers to enable the macroscopic imager to capture macroscopic images, and the microscopic imager to capture optically formed sectional microscopic images on or within the tissue, when presented to the tissue, via the optically transparent material of the substrate. A computer system controls movement of the stage, and receives the macroscopic and microscopic images. A display is provided for displaying the macroscopic and microscopic images when received by the computer system. The tissue is verified as being in an orientation at least substantially flush against the upper surface of the substrate by being in focus in displayed macroscopic images prior to imaging by the microscopic imager, and if needed, any portion of the tissue unfocused is manually positioned until desired tissue orientation is achieved.