In accordance with some embodiments of the disclosed subject matter, systems, methods, and media for selectively presenting images captured by confocal laser endomicroscopy (CLE) are provided. In some embodiments, a method comprises: receiving images captured by a CLE device during brain surgery; providing the images to a convolution neural network (CNN) trained using at least a plurality of images of brain tissue captured by a CLE device and labeled diagnostic or non-diagnostic; receiving an indication, from the CNN, likelihoods that the images are diagnostic images; determining, based on the likelihoods, which of the images are diagnostic images; and in response to determining that an image is a diagnostic image, causing the image to be presented during the brain surgery.

In a disclosed example, a computer-implemented method includes storing image data that includes an input image of a blood sample within a blood monitoring device. The method also includes generating, by a machine learning model, a segmentation mask that assigns pixels in the input image to one of a plurality of classes, which correlate to respective known biophysical properties of blood cells. The method also includes extracting cell images from the input image based on the segmentation mask, in which each extracted cell image includes a respective cluster of the pixels assigned to a respective one of the plurality of classes.

Various example embodiments pertain to processing images that depict tissue samples using a neural network algorithm. The neural network algorithm includes multiple encoder branches that are copies of each other that share the same parameters. The encoder branches can, accordingly, be referred to as Siamese copies of each other.

Systems, methods, and computer program products that are configured to identify or otherwise detect the presence of bacteria, classify the identified or detected bacteria, and also predict the growth of the classified bacteria on various touchable surfaces within a vehicle passenger cabin or compartment. Such systems, methods, and computer program products are configured to identify/detect, classify, and predict the presence and/or growth of bacteria, and transmit one or more alerts, warnings, and/or reports to vehicle owners, service providers, and/or occupants based on the identification/detection, classification, and prediction.

A computer-implemented method is provided for analyzing videos of a living system captured with microscopic imaging. The method can include obtaining a base dataset including one or more videos captured with microscopic imaging with at least one of the one or more videos including a cellular event, and cropping out, from the base dataset, sub-videos including one or more objects of interest that may be involved in the cellular event. An artificial neural network (ANN) model can be trained using the plurality of selected sub-videos as training data, to perform unsupervised video alignment, a query sub-video can be aligned using the trained ANN model, and a determination can be made whether or not the query sub-video includes the cellular event.

A cancer cell detection device includes a computer with a database and a display and a microscope coupled to the computer. The microscope has a base upon which a biopsy sample can be placed. The device further includes a camera coupled to the microscope and computer. The camera is configured to capture images of the biopsy sample. The device also has a filter configured to attach to the microscope and a connection feature for connecting the computer to the camera and the filter. The computer further includes a processor that processes the images captured by the camera and classifies the images according to known variables stored in the database.

The technology disclosed relates to equalizer-based intensity correction for base calling. In particular, the technology disclosed relates to accessing an image whose pixels depict intensity emissions from a target cluster and intensity emissions from additional adjacent clusters, selecting a lookup table that contains pixel coefficients that are configured to increase a signal-to-noise ratio, applying the pixel coefficients to intensity values of the pixels in the image to produce an output, and base calling the target cluster based on the output.

Methods and systems for setting up care areas (CAs) for inspection of a specimen are provided. One system includes an imaging subsystem configured for generating images of a specimen and a computer subsystem configured for determining a number of defects detected in predefined cells within one or more of the images generated in a repeating patterned area formed on the specimen. The computer subsystem is also configured for comparing the number of the defects detected in each of two or more of the predefined cells to a predetermined threshold and designating any one or more of the two or more of the predefined cells in which the number of the defects is greater than the predetermined threshold as one or more CAs. In addition, the computer subsystem is configured for storing information for the one or more CAs for use in inspection of the specimen.

A classification training method for training classifiers adapted to identify specific mutations associated with different cancer including identifying driver mutations. First cells from mutation cell lines derived from conditions having the number of driver mutations are acquired and 3D image feature data from the number of first cells is identified. 3D cell imaging data from the number of first cells and from other malignant cells is generated, where cell imaging data includes a number of first individual cell images. A second set of 3D cell imaging data is generated from a set of normal cells where the number of driver mutations are expected to occur, where the second set of cell imaging data includes second individual cell images. Supervised learning is conducted based on cell line status as ground truth to generate a classifier.

Disclosed herein include systems and methods for biological object tracking and lineage construction. Also disclosed herein include cloud-based systems and methods for allocating computational resources for deep learning-enabled image analysis of biological objects. Also disclosed herein include systems and methods for annotating and curating biological object tracking-specific training datasets.