Methods for classifying fluorescent flow cytometer data are provided. In some instances, methods include processing the flow cytometer data with a supervised algorithm configured to cluster the fluorescent flow cytometer data into distinct populations according to the relationship of data points to relevant threshold values. In embodiments, methods include determining a measure of spillover spreading by calculating spillover spreading coefficients and combining them in a spillover spreading matrix. In some embodiments, populations of fluorescent flow cytometer data are adjusted to subtract the magnitude of spillover spreading. In embodiments, spillover spreading adjusted populations are partitioned after potential partitions are evaluated relative to the threshold values. In embodiments, partitioned populations of fluorescent flow cytometer data are classified (i.e., phenotyped) according to a hierarchy. Systems and computer-readable media for classifying fluorescent flow cytometer data are also provided.

A urine analysis system according to an embodiment includes: a testing apparatus that measures particles included in a urine sample according to a flow cytometry method; an image capturing apparatus that captures images of particles in the urine sample to acquire particle images; and a management apparatus that receives a measurement result obtained by the testing apparatus and the particle images acquired by the image capturing apparatus. The management apparatus generates an order to capture an image of the urine sample based on the measurement result obtained by the testing apparatus. The image capturing apparatus executes the image capturing processing of the particles in the urine sample for which the image capturing order has been generated by the management apparatus, and transmits the acquired particle images to the management apparatus.

A method comprises using an atomic-force microscope, acquiring a set of images associated with surfaces, and, using a machine-learning algorithm applied to the images, classifying the surfaces. As a particular example, the classification can be done in a way that relies on surface parameters derived from the images rather than using the images directly.

A system for the detection and classification of live microorganisms in a sample includes a light source and an incubator holding one or more sample-containing growth plates. A translation stage moves the image sensor and/or the growth plate(s) along one or more dimensions to capture time-lapse holographic images of microorganisms. Image processing software executed by a computing device captures time-lapse holographic images of the microorganisms or clusters of microorganisms on the one or more growth plates. The image processing software is configured to detect candidate microorganism colonies in reconstructed, time-lapse holographic images based on differential image analysis. The image processing software includes one or more trained deep neural networks that process the time-lapsed image(s) of candidate microorganism colonies to detect true microorganism colonies and/or output a species associated with each true microorganism colony.

A computer-implemented method comprises the following steps. In one step an image is acquired which is captured in the context of a microscopy measurement and images a sample to be examined. In one step the microscopy measurement is monitored in an automated manner. On the basis of the automated monitoring of the microscopy measurement, one or more labels are created, wherein said one or more labels comprise semantic context information of the microscopy measurement. On the basis of the image as input and said one or more labels as ground truth, a machine-learned algorithm is trained which provides semantic context information on the basis of images captured in the context of microscopy measurements. In a further step a further image is acquired, which is captured in the context of the microscopy measurement or a further microscopy measurement by the microscope and images the sample or a further sample. In a further step the trained machine-learned algorithm is applied to the further image in order to predict further semantic context information for the further image.

A deep-ultraviolet microscopy system includes a light source for outputting a light beam for illuminating a biological sample, the light beam being inclusive of ultraviolet wavelengths; a reception space for reception of a biological sample for illumination by the light beam; an ultraviolet microscope objective for collecting and relaying light that interacts with the biological sample to an image capture device; and an ultraviolet sensitive image capture device for capturing images of the biological sample, with the microscopy system configured to capture multiple images of the biological sample at one or more ultraviolet wavelengths. A method of processing ultraviolet images of biological samples includes receiving a plurality of multi-spectral ultraviolet images of a biological sample; normalizing and scaling the images; and assigning each image to a channel in the RGB color-space based on wavelength.

The present disclosure relates to a non-transitory computer-readable medium storing computer-executable instructions that, when executed, cause a processor to perform operations. The operations include extracting one or more image characterization metrics from respective ones of a plurality of digitized images within an imaging data set. The plurality of digitized images have batch effects. The operations further include identifying a plurality of batch effect groups of the digitized images using the one or more image characterization metrics, and dividing the plurality of batch effect groups between a training set and/or a validation set. The training set and/or the validation set include some of the plurality of digitized images associated with respective ones of the plurality of batch effect groups.

An image acquire device comprising: an irradiator configured to irradiate an undyed tissue with excitation light; an image sensor configured to acquire a third harmonic image of the undyed tissue based on light generated in third harmonic generation caused by interaction between the undyed tissue and the excitation light.

A method for categorizing biological structure of interest (BSOI) in digitized images of biological tissues comprises a stage of identifying BSOIs in digitized images and further comprises presenting an image from the plurality of images that comprises at least one BSOI with high level of entropy to a user, receiving from the user input indicative of a category to be associated with the BSOI that had the high level of entropy and updating the cell categories classifier according to the category of the BSOI provided by the user.

Embodiments include a system for determining cardiovascular information for a patient. The system may include at least one computer system configured to receive patient-specific data regarding a geometry of the patient's heart, and create a three-dimensional model representing at least a portion of the patient's heart based on the patient-specific data. The at least one computer system may be further configured to create a physics-based model relating to a blood flow characteristic of the patient's heart and determine a fractional flow reserve within the patient's heart based on the three-dimensional model and the physics-based model.