Embodiments of the disclosed subject matter provide an automated method and system to isolate and collect cells using computerized analysis of images of cells and their surroundings obtained from a digital imaging device or system. Embodiments of the disclosed subject matter make use of a microwell array, which can comprise a formed, elastomeric grid of indentations or wells. Many, most, or all of the wells in a microwell array can contain a releasable, microfabricated element, which can be referred to as a raft. Embodiments of the disclosed subject matter provide a system and method for cell collection that includes computerized identification and collection of rafts with isolated single cells or a specific group or groups of cells, eliminating the need for continuous human identification and selection.

Microfluidic devices, systems and techniques in connection with particle sorting in liquid, including cytometry devices and techniques and applications in chemical or biological testing and diagnostic measurements.

Embodiments relate to a device (20), a method and a computer program for providing information on at least one sequence, wherein the at least one sequence describes temporally successive signal states, comprising a device (10), a method and a computer program for a cytometer (100) for providing information on one or several cells in a medium in a channel and comprising a cytometer (100). The device (20) comprises an interface (22), which is configured to receive information on a number of the signal states. The device (20) a computational module (24) which is configured to generate a plurality of possible sequences based on the information on the number of the signal states. The computational module (24) is further configured to calculate for at least a subset of the possible sequences correlation functions between a sequence and at least a temporal scaling of the sequence, wherein a correlation function includes a main lobe and one or several side lobes. The computational module (24) is further configured to determine the at least one sequence based on the correlation functions, wherein the order of the signal states within the at least one sequence is selected such that a side lobe in a correlation function of the sequence comprising the at least one temporal scaling of the sequence is reduced as compared to a side lobe which may maximally be acquired in a correlation function by different arrangements of the signal states in the sequence, and to determine the information on the at least one sequence based on the at least one sequence and provide the same via the interface (22).

An optical analysis device includes a light source, a beam shaping unit, a relative movement unit, a photodetector, and a position detector. The light source unit generates a light beam. The beam shaping unit forms a flat beam portion. The relative movement unit is configured to cause the flat beam portion and a test sample including marker particles to relatively move in a minor axis direction of the flat beam portion. The photodetector is configured to detect a light intensity and a light emitting position in a plane orthogonal to the minor axis direction. The position detector is capable of detecting spatial positions of the marker particles on the basis of information on a relative movement amount of the flat beam portion, information on the light intensity and the light emitting position, and a change of the light intensity generated according to a relative movement of the flat beam portion.

A system for filtering light using a spectrometer enhanced with spectral filters using an array of independent photodetectors to measure the fluorescent or scattered light signal. A system comprising a light source, an illuminated sample, a light spectrum device, a collimator lens, a plurality of spectral filters each having a varying and selected light transmission spectrum and a plurality of photodetectors wherein each photodetector is oriented to a spectral filter. A scanning cytometer for measuring fluorescence and light scattering from an illuminated portion of the sample comprising a first light source, a scanner scanning in two axes, a fluorescence detector, an objective lens, an optically translucent medium through which a sample may be illuminated and a confocal apparatus positioned distally from the light source and sample and through which light signals from the sample are transmitted to a fluorescence detector.

According to the present invention, a probe beam (14) having undergone dispersive Fourier transformation by a dispersive Fourier transformation unit is spatially mapped, an inspection object (18, 20) is irradiated with the probe beam (14), and transmitted light (15) from the inspection object (18, 20) is detected, whereby an image is generated on the basis of the intensity of the transmitted light (15). Accordingly, an imaging apparatus can be provided which can irradiate the inspection object (18, 20) with the weak probe beam (14) having an intensity attenuated by the dispersive Fourier transformation unit, which can generate an image only by detecting the transmitted light (15) from the inspection object (18, 20), and which has a high throughput of generating images while an influence on the inspection object (18, 20) is suppressed.

An optical micro-particle detector including a light source, a gas channel and a plurality of optical detectors is provided. The light source is configured to generate a light beam. The gas channel has at least one curved segment. The curved segment has a light entrance and a plurality of light exits. The light beam from the light source enters the gas channel through the light entrance. The plurality of optical detectors are optically coupled to the light exits, respectively.

Aspects of the disclosure include a system for performing cytometry that can be operated in three operational modes. In one operational mode, a fluorescence image of a sample is obtained by exciting one or more fluorophore(s) with a top-hat-shaped excitation beam with a plurality of beams that are radiofrequency shifted relative to one another. In another operational mode, a sample can be illuminated successively over a time interval by a laser beam at a plurality of excitation frequencies in a scanning fashion to generate an image of the sample from the detected fluorescence. In another operational mode, the system can be operated to illuminate a plurality of locations of a sample concurrently by a single excitation frequency (e.g., a horizontal extent), which is generated, e.g., by shifting the central frequency of a laser beam by a radiofrequency and detected fluorescence is used to analyze the sample.

Methods, systems, and devices are disclosed for imaging particles and/or cells using flow cytometry. In one aspect, a method includes transmitting a light beam at a fluidic channel carrying a fluid sample containing particles; optically encoding scattered or fluorescently-emitted light at a spatial optical filter, the spatial optical filter including a surface having a plurality of apertures arranged in a pattern along a transverse direction opposite to particle flow and a longitudinal direction parallel to particle flow, such that different portions of a particle flowing over the pattern of the apertures pass different apertures at different times and scatter the light beam or emit fluorescent light at locations associated with the apertures; and producing image data associated with the particle flowing through the fluidic channel based on the encoded optical signal, in which the produced image data includes information of a physical characteristic of the particle.

Automated analysis of particles in liquid samples using a laser-scanning confocal microscope. More specifically, embodiments described herein enable a novel method and apparatus for focusing a laser-scanning microscope using the reflection of the laser beam off of the vessel containing the liquid sample.