A diffractometric sensor (1), comprises:a substrate (3);two interdigitated affinity gratings (2), a first affinity grating (20) comprising first unit cells (200) with affinity elements (201) and a second affinity grating (21) comprising second unit cells (210) with affinity elements (211), wherein the first unit cells (200) and second unit cells (210) are configured and arranged such that coherent light of a predetermined wavelength generated at a predetermined beam generation location (40) and diffracted by target molecules (204, 214)) bound to the affinity elements (201, 211) constructively interferes at a predetermined detection location (50) with an inverse phase, and wherein the first and second affinity gratings (20, 21) are balanced to generate a bias signal at the predetermined detection location (50) that corresponds to a difference (Am) in the scattering mass of the first and second affinity gratings (20, 21) which is in the range of 0.001 pg/mm.sup.2 to 30000 pg/mm.sup.2.

There is provided a chirped diffractive element (20) in the form of a grating (22) configured for supporting a plurality of guided mode resonances (54), which resonances (54) may be considered to comprise a standing wave. Chirping the grating (22) may allow guided mode resonances (54) to be distinguishable in terms of position within a section (34) the grating (22). An incident electromagnetic field may be coupled into at least one of the sections (34) when the electromagnetic field has a wavelength value within a predetermined wavelength range and a sample has a refractive index value within a predetermined index range. The incident electromagnetic field may be reflected by at least one of the sections (34) of the grating (22) exhibiting a guided mode resonance (54). The reflected electromagnetic field from the section (34) can then be detected by directly imaging the grating (22), thereby revealing the position of the exhibited guided mode resonance (54) in the grating (22), and thereby inferring the refractive index value of the sample.

An optical sensor device includes an optical waveguide portion having a core, the core having a first refractive index, and a functional material layer coupled to the optical fiber portion, the functional material layer being made of a metal oxide material, the functional material layer being structured to have a second refractive index, the second refractive index being less than the first refractive index. The functional material layer may be a nanostructure material comprising the metal oxide material with a plurality of holes or voids formed therein such that the functional material layer is caused to have the second refractive index.

A chemical sensor, including a porous optical waveguide. The loss or index of refraction, or both, of the porous waveguide is affected by the presence of one or more chemicals of interest.

A signal processing apparatus which has an input for receiving a signal conveying a response from first and second optical components to an optical excitation. The first and second optical components are in an optical sensor which is intended to be placed in a sensing zone. The sensing zone contains hydrogen susceptible to migrate into the optical sensor. The signal processing apparatus has a processing entity for processing the response from the first and second optical components to derive information on hydrogen concentration in the optical sensor.

A colorimetric sensor for detecting an analyte of interest in a fluid sample includes a lamellar photonic material having alternating layers of a first polymer layer and a second polymer layer. Each first polymer layer can be a molecularly imprinted polymer defining a cavity shaped to receive an analyte of interest. The photonic material is configured such that, when an analyte contacts the photonic material and becomes disposed within a cavity of the molecularly imprinted polymer, a refractive property of the photonic material changes, causing a detectable color change in the sensor.

Integrated target waveguide devices and optical analytical systems comprising such devices are provided. The target devices include an optical coupler that is optically coupled to an integrated waveguide and that is configured to receive optical input from an optical source through free space, particularly through a low numerical aperture interface. The devices and systems are useful in the analysis of highly multiplexed optical reactions in large numbers at high densities, including biochemical reactions, such as nucleic acid sequencing reactions. The devices provide for the efficient and reliable coupling of optical excitation energy from an optical source to the optical reactions. Optical signals emitted from the reactions can thus be measured with high sensitivity and discrimination. The devices and systems are well suited for miniaturization and high throughput.

Integrated target waveguide devices and optical analytical systems comprising such devices are provided. The target devices include an optical coupler that is optically coupled to an integrated waveguide and that is configured to receive optical input from an optical source through free space, particularly through a low numerical aperture interface. The devices and systems are useful in the analysis of highly multiplexed optical reactions in large numbers at high densities, including biochemical reactions, such as nucleic acid sequencing reactions. The devices provide for the efficient and reliable coupling of optical excitation energy from an optical source to the optical reactions. Optical signals emitted from the reactions can thus be measured with high sensitivity and discrimination. The devices and systems are well suited for miniaturization and high throughput.

A digital assay for a micro RNA (miRNA) or other target analyte in a sample makes use of nanoparticles that absorb light at the resonant wavelength of a photonic crystal (PC). Such nanoparticles locally quench the resonant reflection of light from the PC when present on the surface of the PC. The nanoparticles are functionalized to specifically bind to the target analyte, and the PC surface is functionalized to specifically bind to the nanoparticles that have bound to the target analyte. The sample is exposed to the functionalized nanoparticles, and the individual nanoparticles bound to the PC surface can be identified and counted based on reduced intensity values in the reflected light from the PC. The number of bound nanoparticles that are counted in this way can be correlated to the abundance of the target analyte in the sample.

Optical sensors having one or more soluble coatings thereon are used to detect the presence of a degrading fluid. In a generalized embodiment, the fiber optic sensor includes a fiber optic cable having two strain sensor positioned therein. A soluble layer is positioned over one of the strain sensor. Due to the presence of the soluble layer, the covered strain sensor optically responds differently than the other strain sensor to changes in pressure, strain and temperature. In the presence of a degrading fluid, the soluble layer degrades and ultimately dissolves, thereby changing the optical response of the previously covered strain sensor. When the soluble layer is dissolved, the strain induced by the soluble layer relaxes, thus causing a wavelength shift in the signal of the grating. By monitoring the wavelength shifts of both strain sensors, the fiber optic sensor acts as a detector for the presence of the degrading fluid.