This invention provides, in part, various compositions and methods for protecting the gastrointestinal microbiome from antibiotic disruption from orally administered antibiotics.

Disclosed herein is an endotoxin-free asparaginase enzyme. Also disclosed are methods of using the disclosed enzyme to treat subjects with a disease treatable by depletion of asparagine. For example, the disclosed endotoxin-free asparaginase enzyme is useful in the treatment or the manufacture of a medicament for use in the treatment of acute lymphoblastic leukemia (ALL) in both adults and children, as well as other conditions where asparagine depletion is expected to have a useful effect.

Disclosed herein is an endotoxin-free asparaginase enzyme. Also disclosed are methods of using the disclosed enzyme to treat subjects with a disease treatable by depletion of asparagine. For example, the disclosed endotoxin-free asparaginase enzyme is useful in the treatment or the manufacture of a medicament for use in the treatment of acute lymphoblastic leukemia (ALL) in both adults and children, as well as other conditions where asparagine depletion is expected to have a useful effect.

Disclosed herein are synergistically effective combinations of Amino Acid Depletion Agents (AADA) and Amino Acid Depletion Agent Sensitizers (AADAS). Also disclosed are methods of using the disclosed combinations to treat subjects with a disease treatable by amino acid depletion-induced cell death (e.g. apoptosis). For example, the disclosed combinations are useful in the treatment or the manufacture of a medicament for use in the treatment of adult and pediatric cancers, in particular, acute lymphoblastic leukemia (ALL), as well as other conditions where amino acid depletion-induced apoptosis is expected to have a therapeutically useful effect. The synergistic combinations are also effective against solid tumors and lymphomas, including gastric cancer, pancreatic cancer, NK lymphoma, DLBCL, colorectal cancer, bladder cancer, hepatic cancer and glioblastoma.

Disclosed herein are synergistically effective combinations of Amino Acid Depletion Agents (AADA) and Amino Acid Depletion Agent Sensitizers (AADAS). Also disclosed are methods of using the disclosed combinations to treat subjects with a disease treatable by amino acid depletion-induced cell death (e.g. apoptosis). For example, the disclosed combinations are useful in the treatment or the manufacture of a medicament for use in the treatment of adult and pediatric cancers, in particular, acute lymphoblastic leukemia (ALL), as well as other conditions where amino acid depletion-induced apoptosis is expected to have a therapeutically useful effect. The synergistic combinations are also effective against solid tumors and lymphomas, including gastric cancer, pancreatic cancer, NK lymphoma, DLBCL, colorectal cancer, bladder cancer, hepatic cancer and glioblastoma.

Disclosed herein are synergistically effective combinations of Amino Acid Depletion Agents (AADA) and Amino Acid Depletion Agent Sensitizers (AADAS). Also disclosed are methods of using the disclosed combinations to treat subjects with a disease treatable by amino acid depletion-induced cell death (e.g. apoptosis). For example, the disclosed combinations are useful in the treatment or the manufacture of a medicament for use in the treatment of adult and pediatric cancers, in particular, acute lymphoblastic leukemia (ALL), as well as other conditions where amino acid depletion-induced apoptosis is expected to have a therapeutically useful effect. The synergistic combinations are also effective against solid tumors and lymphomas, including gastric cancer, pancreatic cancer, NK lymphoma, DLBCL, colorectal cancer, bladder cancer, hepatic cancer and glioblastoma.

Provided are a fusion protein that improves gene editing efficiency and an application thereof. The fusion protein comprises a single-stranded DNA binding protein functional domain, nucleoside deaminase and nuclease. According to CBEs, when carrying our base conversion from C-G to T-A, nucleoside deaminase such as cytosine deaminase carries out deamination by using single-stranded DNA as a substrate, and by re-fusing the single-stranded DNA binding protein functional domain on the fusion protein of the nucleoside deaminase and nuclease, the chance of single-stranded DNA being exposed to the nucleoside deaminase is greatly increased, thereby significantly improving base editing efficiency. The present disclosure provides a breakthrough improvement of single-base gene editing technology and can greatly promote the application thereof in aspects such as gene editing, gene therapy, cell therapy, animal model making, and crop genetic breeding.

Provided are a fusion protein that improves gene editing efficiency and an application thereof. The fusion protein comprises a single-stranded DNA binding protein functional domain, nucleoside deaminase and nuclease. According to CBEs, when carrying our base conversion from C-G to T-A, nucleoside deaminase such as cytosine deaminase carries out deamination by using single-stranded DNA as a substrate, and by re-fusing the single-stranded DNA binding protein functional domain on the fusion protein of the nucleoside deaminase and nuclease, the chance of single-stranded DNA being exposed to the nucleoside deaminase is greatly increased, thereby significantly improving base editing efficiency. The present disclosure provides a breakthrough improvement of single-base gene editing technology and can greatly promote the application thereof in aspects such as gene editing, gene therapy, cell therapy, animal model making, and crop genetic breeding.

Disclosed herein are peptide sequences capable of directing adeno-associated viruses (AAV) to target specific environments, for example the nervous system and the heart, in a subject. Also disclosed are AAVs having non-naturally occurring capsid proteins comprising the disclosed peptide sequences, and methods of using the AAVs to treat diseases.

Provided are amino acid sequences capable of binding to and inhibiting a Cas protein's ability to bind to a nucleic acid molecule, thereby inhibiting the Cas protein's function in genome editing. Such Cas protein inhibitors, which can be comprised of a major coat protein (G8P), an extracellular region of the G8P (G8P.sub.EX), or a biological equivalent, are useful in improving the specificity of Cas protein-based genome editing procedures.