Methods for detecting the presence of a pathogen infection are described. In particular, this document provides a method of detecting target nucleic acids, such as pathogen-specific RNA, in a biological sample obtained from a subject, where the method comprises using one or more toehold switch sensors and an isothermal amplification step to detect the target nucleic acid. Methods specific for detecting and identify the presence of a virus such as Zika virus are also provided.

A method for testing a sample for the presence of one or more targets comprises multiplexed catalyzed reporter deposition (CARD) is provided.

This document provides methods and materials for detecting target nucleic acid. For example, methods and materials for detecting the presence or absence of target nucleic acid, methods and materials for detecting the amount of target nucleic acid present within a sample, kits for detecting the presence or absence of target nucleic acid, kits for detecting the amount of target nucleic acid present within a sample, and methods for making such kits are provided.

This document provides methods and materials for detecting target nucleic acid. For example, methods and materials for detecting the presence or absence of target nucleic acid, methods and materials for detecting the amount of target nucleic acid present within a sample, kits for detecting the presence or absence of target nucleic acid, kits for detecting the amount of target nucleic acid present within a sample, and methods for making such kits are provided.

Method of identifying a cognate nucleotide (i.e., the “next correct nucleotide”) for a primed template nucleic acid molecule. In some embodiments, an ordered or random array of primed target nucleic acids characterized by different cognate nucleotides can be evaluated using a single imaging step to identify different cognate nucleotides for a collection of different primed template nucleic acid molecules. An optional incorporation step can follow the identifying step. A polymerase different from the ones used in the binding and examination steps can be used to incorporate a nucleotide, such as a reversible terminator nucleotide, preliminary to identification of the next cognate nucleotide.

Method of identifying a cognate nucleotide (i.e., the “next correct nucleotide”) for a primed template nucleic acid molecule. In some embodiments, an ordered or random array of primed target nucleic acids characterized by different cognate nucleotides can be evaluated using a single imaging step to identify different cognate nucleotides for a collection of different primed template nucleic acid molecules. An optional incorporation step can follow the identifying step. A polymerase different from the ones used in the binding and examination steps can be used to incorporate a nucleotide, such as a reversible terminator nucleotide, preliminary to identification of the next cognate nucleotide.

An assay system is provided of great sensitivity and portability where the presence of a specific target in a sample, as well as its concentration (qualification and quantification) is detected by reason of a potential or voltage in a closed circuit, built up a redox reaction. The reaction is produced by binding a capture moiety to an enzymatic redox reaction partner, allowing the capture moiety to bind to any target in the sample. In a homogenous assay, the method further comprises washing any such bound target. The bound target may be immobilized through use of a second capture moiety. Substrate for the enzyme is then added. The action on the substrate by the enzyme generates electrons, creating a potential across an anode and cathode which may be separated by a membrane.

An assay system is provided of great sensitivity and portability where the presence of a specific target in a sample, as well as its concentration (qualification and quantification) is detected by reason of a potential or voltage in a closed circuit, built up a redox reaction. The reaction is produced by binding a capture moiety to an enzymatic redox reaction partner, allowing the capture moiety to bind to any target in the sample. In a homogenous assay, the method further comprises washing any such bound target. The bound target may be immobilized through use of a second capture moiety. Substrate for the enzyme is then added. The action on the substrate by the enzyme generates electrons, creating a potential across an anode and cathode which may be separated by a membrane.

A magnetic particle composition (e) containing magnetic particles (c) and a chaotropic salt (D), the magnetic particles (c) each including a core particle (P) that is a magnetic silica particle containing a magnetic metal oxide particle (A), wherein the magnetic metal oxide particle (A) in the core particle (P) has a weight percentage of 60 wt % or more based on the weight of the core particle (P), and the magnetic particles (c) have a particle size distribution with a coefficient of variation of 5 to 50%.

A magnetic particle composition (e) containing magnetic particles (c) and a chaotropic salt (D), the magnetic particles (c) each including a core particle (P) that is a magnetic silica particle containing a magnetic metal oxide particle (A), wherein the magnetic metal oxide particle (A) in the core particle (P) has a weight percentage of 60 wt % or more based on the weight of the core particle (P), and the magnetic particles (c) have a particle size distribution with a coefficient of variation of 5 to 50%.