Compositions and methods for identifying antigen-specific T cells, including determining paired T cell receptor sequences for a specific antigen, are described. Compositions and methods for identifying neoantigen-specific T cells are also described. Microfluidic devices useful for identifying antigen-specific T cells, and methods of using the same, are also described.

Compositions and methods for identifying antigen-specific T cells, including determining paired T cell receptor sequences for a specific antigen, are described. Compositions and methods for identifying neoantigen-specific T cells are also described. Microfluidic devices useful for identifying antigen-specific T cells, and methods of using the same, are also described.

The purpose of the present invention is to provide: a method which is for assessing the differentiation state of cells and by which the differentiation state of a wide variety of cells can be assessed; and gelatin nanoparticles which can be used in said method. The purpose is achieved by a method for assessing the differentiation state of cells, the method comprising a step for observing the expression of pyruvate dehydrogenase kinase 1 (PDK1) or mRNA (Pdk1) encoding pyruvate dehydrogenase kinase 1 in cells. Said method can be carried out by using gelatin nanoparticles which are used for assessing the differentiation state of cells and carry a probe capable of detecting Pdk1 or PDK1.

The purpose of the present invention is to provide: a method which is for assessing the differentiation state of cells and by which the differentiation state of a wide variety of cells can be assessed; and gelatin nanoparticles which can be used in said method. The purpose is achieved by a method for assessing the differentiation state of cells, the method comprising a step for observing the expression of pyruvate dehydrogenase kinase 1 (PDK1) or mRNA (Pdk1) encoding pyruvate dehydrogenase kinase 1 in cells. Said method can be carried out by using gelatin nanoparticles which are used for assessing the differentiation state of cells and carry a probe capable of detecting Pdk1 or PDK1.

Provided is an emulsion composition for digital PCR and uniform partitioning method of PCR samples for a digital polymerase chain reaction (digital PCR). With a digital polymerase chain reaction (digital PCR) emulsion composition for uniformly partitioning a PCR sample, a preparation method thereof, and a uniform partitioning method of a PCR sample according to the present invention, a PCR reagent to be amplified may be easily and rapidly prepared in an emulsion form, and reliability of digital PCR results may be significantly improved by allowing the formed emulsion to be uniformly partitioned using a cylindrical plate to which a reaction film is attached.

Provided is an emulsion composition for digital PCR and uniform partitioning method of PCR samples for a digital polymerase chain reaction (digital PCR). With a digital polymerase chain reaction (digital PCR) emulsion composition for uniformly partitioning a PCR sample, a preparation method thereof, and a uniform partitioning method of a PCR sample according to the present invention, a PCR reagent to be amplified may be easily and rapidly prepared in an emulsion form, and reliability of digital PCR results may be significantly improved by allowing the formed emulsion to be uniformly partitioned using a cylindrical plate to which a reaction film is attached.

Efficient methods are disclosed for the high throughput identification of mutations in genes in members of mutagenized populations. The methods comprise DNA isolation, pooling, amplification, creation of libraries, high throughput sequencing of libraries, preferably by sequencing-by-synthesis technologies, identification of mutations and identification of the member of the population carrying the mutation and identification of the mutation.

Efficient methods are disclosed for the high throughput identification of mutations in genes in members of mutagenized populations. The methods comprise DNA isolation, pooling, amplification, creation of libraries, high throughput sequencing of libraries, preferably by sequencing-by-synthesis technologies, identification of mutations and identification of the member of the population carrying the mutation and identification of the mutation.

Provided herein are systems, devices and methods for the rapid and accurate measurement of analytes by assay of binding events, by direct, digital measurement of individually resolved analyte/reporter binding events. The digital molecular assay systems, devices and methods disclosed herein are capable of particle-by-particle readout using optical reporter molecules that detect and report the binding of a single analyte molecule, and report each such binding in binary format. Such digital molecular assay systems, devices and methods are useful in a variety of applications, such as on mobile electronic devices for use in the field.

Provided herein are systems, devices and methods for the rapid and accurate measurement of analytes by assay of binding events, by direct, digital measurement of individually resolved analyte/reporter binding events. The digital molecular assay systems, devices and methods disclosed herein are capable of particle-by-particle readout using optical reporter molecules that detect and report the binding of a single analyte molecule, and report each such binding in binary format. Such digital molecular assay systems, devices and methods are useful in a variety of applications, such as on mobile electronic devices for use in the field.