Patent classifications
C40B50/04
OLIGONUCLEOTIDE ENCODED CHEMICAL LIBRARIES
This application provides a bead with a covalently attached chemical compound and a covalently attached DNA barcode and methods for using such beads. The bead has many substantially identical copies of the chemical compound and many substantially identical copies of the DNA barcode. The compound consists of one or more chemical monomers, where the DNA barcode takes the form of barcode modules, where each module corresponds to and allows identification of a corresponding chemical monomer. The nucleic acid barcode can have a concatenated structure or an orthogonal structure. Provided are method for sequencing the bead-bound nucleic acid barcode, for cleaving the compound from the bead, and for assessing biological activity of the released compound.
OLIGONUCLEOTIDE ENCODED CHEMICAL LIBRARIES
This application provides a bead with a covalently attached chemical compound and a covalently attached DNA barcode and methods for using such beads. The bead has many substantially identical copies of the chemical compound and many substantially identical copies of the DNA barcode. The compound consists of one or more chemical monomers, where the DNA barcode takes the form of barcode modules, where each module corresponds to and allows identification of a corresponding chemical monomer. The nucleic acid barcode can have a concatenated structure or an orthogonal structure. Provided are method for sequencing the bead-bound nucleic acid barcode, for cleaving the compound from the bead, and for assessing biological activity of the released compound.
METHODS AND SYSTEMS FOR MOLECULAR LIBRARY GENERATION
The present disclosure provides methods and systems for generation of libraries comprising two or more sets of molecules. Libraries may comprise sets of molecules of different types. Sets of molecules may be generated by attachment to supports. Different types of molecules may be generated combinatorially, thereby generating a large number of unique molecules. One or more types of molecules may be used to identify one or more additional types of molecules. Libraries of the present disclosure may be used in, for example, nucleic acid sequencing.
METHODS AND SYSTEMS FOR MOLECULAR LIBRARY GENERATION
The present disclosure provides methods and systems for generation of libraries comprising two or more sets of molecules. Libraries may comprise sets of molecules of different types. Sets of molecules may be generated by attachment to supports. Different types of molecules may be generated combinatorially, thereby generating a large number of unique molecules. One or more types of molecules may be used to identify one or more additional types of molecules. Libraries of the present disclosure may be used in, for example, nucleic acid sequencing.
Nucleotide Triphosphate Immobilised on a Support and Their Use in Nucleic Acid Synthesis
The invention relates to methods of synthesizing polymers, biopolymers, and nucleic acids, to immobilised dNTP/NTPs and kits comprising said immobilised dNTP/NTPs for use in said methods of nucleic acid synthesis.
Nucleotide Triphosphate Immobilised on a Support and Their Use in Nucleic Acid Synthesis
The invention relates to methods of synthesizing polymers, biopolymers, and nucleic acids, to immobilised dNTP/NTPs and kits comprising said immobilised dNTP/NTPs for use in said methods of nucleic acid synthesis.
ENZYMATIC ENCODING METHODS FOR EFFICIENT SYNTHESIS OF LARGE LIBRARIES
- Thomas Franch ,
- Mikkel Dybro LUNDORF ,
- Søren Nyboe Jakobsen ,
- Eva Kampmann Olsen ,
- Anne Lee Andersen ,
- Anette Holtmann ,
- Anders Holm HANSEN ,
- Anders Malling SØRENSEN ,
- Anne GOLDBECH ,
- Daen de LEON ,
- Ditte Kievsmose KALDOR ,
- Frank Abildgaard Sløk ,
- Gitte Nystrup Husemoen ,
- Johannes DOLBERG ,
- Kim Birkebæk Jensen ,
- Lene PETERSEN ,
- Mads Nørregaard-Madsen ,
- Michael Anders Godskesen ,
- Sanne Schrøder Glad ,
- Søren Neve ,
- Thomas Thisted ,
- Tine Titilola Akinleminu KRONBORG ,
- Christian Klarner SAMS ,
- Jakob Felding ,
- Per-Ola Freskgard ,
- Alex GOULIAEV ,
- Henrik Pedersen
Disclosed is a method for obtaining a bifunctional complex comprising a molecule linked to a single stranded identifier oligonucleotide, wherein a nascent bifunctional complex comprising a chemical reaction site and a priming site for enzymatic addition of a tag is a) reacted at the chemical reaction site with one or more reactants, and b) reacted enzymatically at the priming site with one or more tag(s) identifying the reactant(s).
ENZYMATIC ENCODING METHODS FOR EFFICIENT SYNTHESIS OF LARGE LIBRARIES
- Thomas Franch ,
- Mikkel Dybro LUNDORF ,
- Søren Nyboe Jakobsen ,
- Eva Kampmann Olsen ,
- Anne Lee Andersen ,
- Anette Holtmann ,
- Anders Holm HANSEN ,
- Anders Malling SØRENSEN ,
- Anne GOLDBECH ,
- Daen de LEON ,
- Ditte Kievsmose KALDOR ,
- Frank Abildgaard Sløk ,
- Gitte Nystrup Husemoen ,
- Johannes DOLBERG ,
- Kim Birkebæk Jensen ,
- Lene PETERSEN ,
- Mads Nørregaard-Madsen ,
- Michael Anders Godskesen ,
- Sanne Schrøder Glad ,
- Søren Neve ,
- Thomas Thisted ,
- Tine Titilola Akinleminu KRONBORG ,
- Christian Klarner SAMS ,
- Jakob Felding ,
- Per-Ola Freskgard ,
- Alex GOULIAEV ,
- Henrik Pedersen
Disclosed is a method for obtaining a bifunctional complex comprising a molecule linked to a single stranded identifier oligonucleotide, wherein a nascent bifunctional complex comprising a chemical reaction site and a priming site for enzymatic addition of a tag is a) reacted at the chemical reaction site with one or more reactants, and b) reacted enzymatically at the priming site with one or more tag(s) identifying the reactant(s).
METHODS FOR IDENTIFYING SELECTIVE BINDING PAIRS
The present disclosure methods for identifying binding partners using cell surface display libraries, where the cells of the library display engineered peptides on their cell surfaces for identification of peptides that bind to targets of interest. The engineered peptides are preferably expressed in the cells under conditions that provide both secretion and display of the engineered peptides on the cell surfaces, thus providing access of the engineered peptides to identify potential binding pairs. The cell libraries cab be engineered using an automated editing system that provides for one or more targeted edits per cell.
AUTOMATED INSTRUMENTATION FOR PRODUCTION OF PEPTIDE LIBRARIES
The present disclosure provides instrumentation and automated methods for creating cell surface display libraries, where the cells of the library display engineered peptides on their cell surfaces for identification of binding pairs. The engineered peptides may be displayed using various cell surface display technologies.