GLUT-1 as a receptor for HTLV envelopes and its uses
09777044 · 2017-10-03
Assignee
- Centre National De La Recherche Scientifique (Cnrs) (Paris, FR)
- Universite De Montpellier 2 (Montpellier, FR)
Inventors
- Jean-Luc BATTINI (Montpellier, FR)
- Nicolas Manel (Paris, FR)
- Felix KIM (New York City, NY, US)
- Sandrina KINET (Claret, FR)
- Naomi TAYLOR (Montpellier, FR)
- Marc SITBON (Montpellier, FR)
Cpc classification
G01N33/57484
PHYSICS
C07K14/705
CHEMISTRY; METALLURGY
G01N33/566
PHYSICS
C12N2740/14022
CHEMISTRY; METALLURGY
C12N2740/14033
CHEMISTRY; METALLURGY
C12N2740/15045
CHEMISTRY; METALLURGY
C12N2740/15022
CHEMISTRY; METALLURGY
International classification
C07K14/705
CHEMISTRY; METALLURGY
G01N33/566
PHYSICS
Abstract
The present application relates to polypeptides derived from the soluble part of the glycoprotein of the enveloped virus of Primate T-cell leukemia virus (PTLV), or fragments or variants thereof named receptor binding domain ligands (RBD) selected for their ability to bind specifically to the nutrient transporter GLUT1.
Claims
1. An isolated fusion polypeptide, wherein said fusion polypeptide consist of a soluble receptor binding domain (RBD) ligand derived from the soluble part of the glycoprotein of the human T-cell leukemia virus (HTLV-2) binding to the Glucose Transporter 1 (GLUT1), consisting of the amino acid sequence selected from the group consisting of SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 43, and fragments of SEQ ID NO: 4 or SEQ ID NO: 43, wherein said fragments of SEQ ID NO: 43 are polypeptides delimited in their N-terminal extremity by the amino acid located in position 1 to 90 and in their C-terminal extremity by the amino acid located in position 135 to 245 of SEQ ID NO: 43; and wherein said fragments of SEQ ID NO: 4 consist of amino acids 19 to 224 of SEQ ID NO: 4, or 20 to 224 of SEQ ID NO: 4, or 21 to 224 of SEQ ID NO: 4, or 19 to 178 of SEQ ID NO: 4, or 20to 178 of SEQ ID NO: 4, or 21 to 178 of SEQ ID NO: 4, and wherein said isolated polypeptide is chemically modified to add a fluorochrome or a fluorescent compound.
2. The isolated polypeptide according to claim 1, wherein said polypeptide binds to the Glucose Transporter 1 (GLUT1) comprising the amino acid sequence SEQ ID NO: 2 or to a fragment of GLUT1 having an amino acid sequence selected from the group consisting of SEQ ID NO: 35 to SEQ ID NO: 42.
3. The isolated polypeptide according to claim 1, wherein the fluorochrome or fluorescent compound is selected from the group consisting of Cyanine dye, Alexa dye and Quantum dye.
4. A method for diagnosing a GLUT1 related disease comprising: collecting a biological sample from a subject, determining the level of GLUT1 expression at a cell surface using the isolated polypeptide of claim 1, and comparing said level to a reference value for GLUT1 expression at the cell surface in a biological sample from a healthy individual, wherein an elevated level or decreased level of GLUT1 expression in the sample from the subject indicates a GLUT1 related disease.
5. The method according to claim 4, wherein said GLUT1 related disease is GLUT1 deficiency syndrome.
6. The method according to claim 4, wherein said GLUT1 related disease is a cancer disease.
7. An isolated fusion polypeptide, wherein said fusion polypeptide consists of: a soluble receptor binding domain (RBD) ligand derived from the soluble part of the glycoprotein of the human T-cell leukemia virus (HTLV-2) binding to the Glucose Transporter 1 (GLUT1), consisting of the amino acid sequence selected from the group consisting of SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 43, and fragments of SEQ ID NO: 4 or SEQ ID NO: 43, wherein said fragments of SEQ ID NO: 43 are polypeptides delimited in their N-terminal extremity by the amino acid located in position 1 to 90 and in their C-terminal extremity by the amino acid located in position 135 to 245 of SEQ ID NO: 43, and wherein said fragments of SEQ ID NO: 4 consist of amino acids 19 to 224 of SEQ ID NO: 4, or 20 to 224 of SEQ ID NO: 4, or 21 to 224 of SEQ ID NO: 4, or 19 to 178 of SEQ ID NO: 4, or 20 to 178 of SEQ ID NO: 4, or 21 to 178 of SEQ ID NO: 4; and a Tag, an antibody constant fragment, or a fluorescent protein.
8. The isolated fusion polypeptide according to claim 7, wherein the tag is selected from the group consisting of hemaglutinin tag, poly arginine tag, poly histidine tag, myc tag, strep tag, S-tag, HAT tag, 3 times flag tag, calmodulin-binding peptide tag, SBP tag, chitin binding domain tag, GST tag, maltose-binding protein tag, fluorescent protein tag, T7 tag, V5tag and Xpress tag.
9. The isolated fusion polypeptide according to claim 7, wherein the antibody constant fragment is selected from the group consisting of Fc fragment from rabbit and Fc fragment from mouse.
10. The isolated fusion polypeptide according to claim 7, wherein the fluorescent protein is GFP.
11. The isolated fusion polypeptide according to claim 7, wherein said polypeptide binds to the Glucose Transporter 1 (GLUT1) comprising the amino acid sequence SEQ ID NO: 2, or to a fragment of GLUT1 having an amino acid sequence selected from the group consisting of SEQ ID NO: 35 to SEQ ID NO: 42.
12. A kit of parts comprising at least one isolated fusion polypeptide, wherein said fusion polypeptide is the fusion polypeptide of claim 7.
13. A method for diagnosing a GLUT1 related disease comprising: collecting a biological sample from a subject, determining the level of GLUT1 expression at a cell surface using the isolated polypeptide of claim 7, and comparing said level to a reference value for GLUT1 expression at the cell surface in a biological sample from a healthy individual, wherein an elevated level or decreased level of GLUT1 expression in the sample from the subject indicates a GLUT1related disease.
14. The method according to claim 13, wherein said GLUT1 related disease is GLUT1 deficiency syndrome.
15. The method according to claim 13, wherein said GLUT1 related disease is a cancer disease.
16. A composition comprising at least one isolated fusion polypeptide, wherein said fusion polypeptide consists of: a soluble receptor binding domain (RBD) ligand derived from the soluble part of the glycoprotein of the human T-cell leukemia virus (HTLV-2) binding to the Glucose Transporter 1 (GLUT1), consisting of the amino acid sequence selected from the group consisting of SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 7, SEQ ID NO: 43, and fragments of SEQ ID NO: 4 or SEQ ID NO: 43, wherein said fragments of SEQ ID NO: 43 are polypeptides delimited in their N-terminal extremity by the amino acid located in position 1 to 90 and in their C-terminal extremity by the amino acid located in position 135 to 245 of SEQ ID NO: 43; and wherein said fragments of SEQ ID NO: 4 consist of amino acids 19 to 224 of SEQ ID NO: 4, or 20 to 224 of SEQ ID NO: 4, or 21 to 224 of SEQ ID NO: 4, or 19 to 178 of SEQ ID NO: 4, or 20 to 178 of SEQ ID NO: 4, or 21 to 178 of SEQ ID NO: 4; and a Tag, an antibody constant fragment, or a fluorescent protein.
17. The composition according to claim 16, being a pharmaceutical composition and further comprising a pharmaceutically acceptable excipient.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
EXAMPLES
(7) The present invention is further illustrated by the following examples.
Example 1
HTLV Envelopes Alter Lactate Metabolism
(8) Cell proliferation in standard culture media is accompanied by acidification of the milieu that translates into a color change from red to yellow tones in the presence of the phenol-red pH indicator. Upon transfection of either highly syncytial HTLV-1 and HTLV-2 envelopes, or a non-syncytial chimeric envelope that harbors the HTLV-1 RBD in a MLV Env backbone (H.sub.183FEnv), culture medium did not readily acidify, and harbored red tones for several days post-transfection (
(9) Decrease of pH in cell culture is primarily due to extracellular accumulation of lactate [Warburg, 1956]. Lactate is the major byproduct of anaerobic glycolysis in vitro and its excretion is mediated by an H+/lactate symporter [Halestrap, 1999]. We monitored lactate content in culture supernatants following transfection of various retroviral envelopes and RBD. Lactate accumulation was consistently 3-fold lower in H.sub.183FEnv- and HTLV RBD-transfected cells than in control- or MLV Env-transfected cells (
Example 2
Receptor Binding and Lactate Metabolism
(10) To examine whether a direct relationship exists between binding of the HTLV envelope receptor and diminished extracellular acidification and lactate accumulation, we attempted to generate HTLV-1 RBD (H1.sub.RBD) mutants with impaired receptor binding capacities. To this end, mutations resulting in single alanine substitutions were introduced at two different positions in H1.sub.RBD, D106 and Y114 which are highly conserved among primate T-lymphotropic viruses. Although both D106A and Y114A RBD mutants were expressed and secreted as efficiently as the wild-type H1.sub.RBD (
(11) Extracellular lactate accumulates in cell cultures following its transport across cellular membranes by the MCT1 monocarboxylate transporter [Garcia, 1994]. Because HTLV and MLV share a common organization of the extracellular envelope [Kim, 2000] and the receptors for MLV Env are multispanning metabolite transporters [Overbaugh, 2001], we assessed whether the HTLV RBD bound to MCT1. Moreover, similar to our previous data concerning expression of the HTLV receptor on T cells [Manel, 2003], expression of MCT1 chaperone CD147 [Kirk, 2000] increases during T cell activation [Kasinrerk, 1992]. However, separate and combined overexpression of MCT1 and CD147 did not result in increased H1.sub.RBD binding, arguing against a role for these molecules as receptors for HTLV Env.
Example 3
HTLV Receptor and Glucose Metabolism
(12) In addition to a decrease in extracellular lactate accumulation, expression of the HTLV RBD also led to decreased intracellular lactate content, indicative of metabolic alterations upstream of lactate transport. In cell cultures, lactate accumulation results from the degradation of glucose during anaerobic glycolysis. Therefore, we assessed whether the decreased accumulation of lactate observed upon expression of HTLV RBD was linked to glucose metabolism. We measured glucose consumption as normalized to cellular protein content. Glucose consumption of cells expressing an HTLV RBD within the context of the H.sub.183FEnv entire envelope or the H1.sub.RBD was significantly decreased as compared to control cells (
Example 4
HTLV Envelopes Bind Glucose Transporter-1
(13) A simple model whereby the HTLV envelope inhibits glucose consumption via direct binding to a glucose transporter can explain the metabolic effects described above. Upon evaluation of the different glucose transporter candidates, GLUT-1 appears to be the only one encompassing all the known properties of the HTLV receptor. Indeed, GLUT-1 expression is increased upon glucose deprivation and is transports glucose in all vertebrate cells [Mueckler, 1985], while fructose is transported by GLUT-5. Furthermore, GLUT-1 is not expressed on resting primary T cells and its expression is induced upon T cell activation [Rathmell, 2000; Chakrabarti, 1994] with kinetics that are strikingly similar to what we have reported for the HTLV receptor [Manel, 2003]. Since human but not murine erythrocytes have been described to be the cells exhibiting the highest concentration of GLUT-1 [Mueckler, 1994], we evaluated HTLV receptor availability on freshly isolated red blood cells. Binding of H1.sub.RBD on human erythrocytes was strikingly efficient, reaching levels higher than those observed on any other tested cell type, whereas A.sub.RBD binding to erythrocytes was minimal (
(14) In order to directly test the ability of HTLV envelopes to bind GLUT-1, we derived a tagged GLUT-1 expression vector and overexpressed this protein in HeLa cells. Both H1.sub.RBD and H2.sub.RBD binding was dramatically increased upon GLUT-1 overexpression (
(15) Interaction of GLUT-1 with its ligand cytochalasin B inhibits glucose transport [Kasahara, 1977]. Since we showed that binding of HTLV envelopes to GLUT-1 inhibits glucose consumption and uptake, we tested whether cytochalasin B would abrogate HTLV RBD binding. Indeed, cytochalasin B treatment of Jurkat T cells dramatically inhibited binding of H1.sub.RBD, whereas binding of A.sub.RBD was not affected (
(16) Viral receptor permits entry and thus infection. No cellular system currently exists that lacks GLUT-1 expression. Thus, we developed a system in which HTLV infection is specifically inhibited at the level of envelope-receptor interaction. In this system, over-expression of HTLV-2 RBD interferes with infecting incoming HTLV particles and specifically decreases HTLV titers by at least 2 logs, while no effect is detected on control A-MLV titers. To determine if GLUT-1 is an entry receptor for HTLV, we overexpressed GLUT-1, GLUT-3 or Pit2 in addition to the interfering H2.sub.RBD. While Pit2 and GLUT-3 had no effect on HTLV titers, GLUT-1 completely alleviated the interference to infection induced by H2.sub.RBD (
(17) Discussion
(18) Here we show that HTLV-1 and -2 envelopes interact with GLUT-1 through their receptor binding domains. This interaction strongly inhibits glucose consumption and glucose uptake, leading to decreased lactate production and a block in extracellular milieu acidification. Mutations that specifically altered receptor binding of both HTLV-1 and 2 envelopes released the block in glucose consumption, indicative of a direct correlation between receptor binding determinants in the HTLV envelopes and glucose transport. Glucose starvation was rapidly followed by increased binding of HTLV envelopes, highlighting a nutrient-sensing negative feedback loop between glucose availability and cell surface HTLV receptor expression. Further evidence converged to identify GLUT-1 as the receptor, including increased binding of HTLV RBD upon overexpression of GLUT-1 but not GLUT-3, immunoprecipitation of GLUT-1 by H1.sub.RBD but not the receptor-binding mutant H1.sub.RBD Y114A, uppermost binding of HTLV RBD on human erythrocytes, where GLUT-1 is the major glucose transporter isoform, and no binding of HTLV RBD on human primary hepatocytes and murine erythrocytes, where GLUT-1 is minimally expressed. Finally, GLUT-1 could specifically alleviate interference to infection induced by HTLV RBD. GLUT-1 fits all other known properties of the HTLV receptor. Indeed, as previously demonstrated for the HTLV receptor [Manel, 2003], GLUT-1, but not the GLUT 2-4 isoforms, is not expressed on resting T lymphocytes [Chakrabarti, 1994; Korgun, 2002] and is induced upon immunological [Frauwirth, 2002; Yu, 2003] or pharmacological [Chakrabarti, 1994] activation. Moreover, GLUT-1 orthologues are highly conserved among vertebrates, but are highly divergent between vertebrates and insects [Escher, 1999].
(19) GLUT-1 is thus a new member of the multimembrane spanning metabolite transporters that serve as receptors for retroviral envelopes. Interestingly, until now, all envelopes that recognize these receptors have been encoded by retroviruses that have a so-called simple genetic organization, such as MLV, feline leukemia viruses, porcine endogenous retrovirus and the gibbon ape leukemia virus [Overbaugh, 2001], whereas HTLV belongs to the so-called complex retroviruses which code for several additional regulatory proteins. However, we have shown that in contrast to the wide phylogenetic divergence of their genomic RNA, the envelopes of HTLV and MLV share a similar modular organization with some highly conserved amino acid motifs in their respective receptor binding domains [Kim, 2000].
(20) Cell-to-cell contact appears to be required for HTLV transmission, and the cytoskeleton appears to play a major role in this process [Igakura, 2003]. Indeed, we observed that the HTLV receptor, despite pancellular expression, is specifically concentrated to mobile membrane regions and cell-to-cell contact areas. It should therefore be expected that the HTLV envelope receptor is associated to the cytoskeleton Importantly, a cytoplasmic-binding partner of GLUT-1, GLUT1CBP, which encodes a PDZ domain, has been reported to link GLUT-1 to the cytoskeleton [Bunn, 1999]. It will therefore be interesting to evaluate the respective roles of the HTLV envelope, its cytoskeleton-associated cellular partners, such as GLUT-1, GLUT1CBP and their immediate interacting cell components.
(21) Because expression of the HTLV receptor is induced upon glucose starvation, transmission of HTLV may be more efficient in cells that are locally starved for glucose, such as lymphocytes in lymph nodes [Yu, 2003]. Furthermore, the ability of circulating erythrocytes to dock HTLV, as shown here, might provide a means to distribute HTLV to such tissues.
(22) The identification of GLUT-1 as a receptor for HTLV envelopes provides additional clues as to the ubiquitous in vitro expression of the receptor on cell lines and the paradoxical restriction of HTLV tropism to T lymphocytes in vivo. Rapid and dramatic metabolic alterations associated with the blockade of glucose consumption are likely to take place upon expression of the HTLV envelope in vivo, early after infection. Therefore, we propose that in vivo, HTLV infection initially spreads with a large tropism, however early after infection the vast majority of cells that are highly dependent on GLUT-1 activity are rapidly eliminated. In contrast, resting T lymphocytes that have an extremely low metabolic rate and as such are much less dependent on glucose uptake, can tolerate this effect and are therefore maintained in vivo. Furthermore, local imbalances in the access to glucose following HTLV infection may lead to specific physiological alterations [Akaoka, 2001]. In this regard, it will be of interest to study the potential relationship between HTLV-associated neuropathologies and the specific dependence of neurons on GLUT-1 mediated glucose consumption [Siegel, 1998].
(23) Materials and Methods
(24) Cell culture. 293T human embryonic kidney and HeLa cervical carcinoma cells were grown in Dulbecco's modified Eagle medium (DMEM) with high glucose (4.5 g/l) and Jurkat T-cells were grown in RPMI supplemented with 10% fetal bovine serum (FBS) at 37° C. in a 5% CO2-95% air atmosphere. For glucose starvation experiments, cells were grown in either glucose-free DMEM (Life Technologies) or glucose-free RPMI—(Dutscher) with 10% dialyzed FBS (Life Technologies) and glucose (1 g/l) was supplemented when indicated.
(25) Expression vectors. Full length envelope expression vectors for HTLV-1 (pCEL/2[Denesvre, 1995]) and Friend ecotropic MLV (pCEL/F [Denesvre, 1995]), have been previously described. For the HTLV-2 envelope, a fragment from pHTE2 [Rosenberg, 1998] encompassing the tax, rex and env genes and the 3′ LTR was inserted in the pCSI [Battini, 1999] vector (pCSIX.H2). Full length envelope expression vectors for amphotropic MLV (pCSI.A), or devoid of its R peptide (pCSI.AΔR), and H.sub.183FEnv that contains the N-terminal 183 amino acids of the HTLV-1 receptor-binding domain in the F-MLV envelope background, as well as truncated envelope expression vectors, derived from pCSI and encoding either of the first 215 residues of HTLV-1 SU (H1.sub.RBD), the first 178 residues of HTLV2-SU (H2.sub.RBD) or the first 397 residues of the amphotropic murine leukemia virus (MLV) SU (Amp), fused to a C-terminal rabbit IgG Fc tag (rFc) or to EGFP (H2.sub.RBD-GFP). All point mutations introduced in HTLV-1 and -2 RBD constructs were generated using the quickchange site-directed mutagenesis method and mutations were verified by sequencing. Human Glut-1 and Glut-3 cDNA were amplified by PCR from the pLib HeLa cDNA library (Clontech), and inserted into pCHIX, a modified version of the pCSI vector that contains a cassette comprising a factor Xa cleavage site, two copies of the hemagglutinin (HA) tag, and a histidine tag. The resulting construct (pCHIX.hGLUT1) encodes a GLUT-1 protein with a HA-His tag at the C-terminal end. GLUT-1 and GLUT-3 were also inserted in a modified pCSI vector containing a DsRed2 C-terminal tag. Similarly, human CD147 was amplified from 293T total RNA by RT-PCR and inserted into the pCHIX backbone in frame with the HA-His tag (pCHIX.hCD147).
(26) Envelope expression and metabolic measurements. 293T cells were transfected with the various envelope expression vectors using a modified version of the calcium phosphate method. After an overnight transfection, cells were washed in phosphate-buffered saline (PBS) and fresh medium was added. Media were harvested at the indicated time points, filtered through a 0.45-μm pore-size filter, and lactate and glucose were measured with enzymatic diagnostic kits (Sigma). Values were normalized to cellular protein content using the Bradford assay (Sigma) after solubilization of cells in lysis buffer (50 mM Tris-HCl pH 8.0, 150 mM NaCl, 0.1% sodium dodecyl sulfate, 1.0% Nonidet P-40, 0.5% deoxycholate) and clarification by centrifugation.
(27) Assay of hexose uptake. 2-deoxy-D[1-.sup.3H]glucose, D[U-.sup.14C]fructose and 3-O-[.sup.14C]methyl-D-glucose were obtained from Amersham. Hexose uptake assay were adapted from Harrison et al. 1991). After transfection, approximately 250,000 were seeded/well in 24-well plates. The next day, cells were washed two times in PBS, incubated in serum-free DMEM, washed one time in serum-free glucose-free DMEM, and incubated for 20′ in 500 μl serum-free glucose-free DMEM modulo inhibitors (20 μM cytochalasin B, 300 μM phloretin; SIGMA). Uptake was initiated by adding labeled hexoses to a final concentration of 0.1 mM (2 μCi/ml for 2-2-deoxy-D[1-.sup.3H]glucose and 0.2 μCi/ml for D[U-.sup.14C]fructose and 3-O-[.sup.14C]methyl-D-glucose) and cells were incubated for 5′ additional minutes. Cells were then resuspended in 500 μl cold serum-free glucose-free DMEM, wash one time in serum-free glucose-free DMEM, and solubilized in 400 μl of 0.1% SDS. 3 μl was used for Bradford normalization, while the rest was used for detection of either .sup.3H or .sup.14C by liquid scintillation in a Beckman counter.
(28) Western blots. Culture media (10 μl) from 293T cells expressing wild type or mutant HTLV-1 RBDs, and/or GLUT-1 or GLUT-3 expression vector. were subjected to electrophoresis on SDS-15% acrylamide gels, transferred onto nitrocellulose (Protran; Schleicher & Schuell), blocked in PBS containing 5% powdered milk and 0.5% Tween 20, probed with either a 1:5000 dilution of horseradish peroxidase-conjugated anti-rabbit immunoglobulin or 1:2000 dilution of anti-HA 12CA5 (Roche) monoclonal antibody followed by a 1:5000 dilution of horseradish peroxidase-conjugated anti-mouse immunoglobulin, and visualized using an enhanced chemiluminescence kit (Amersham).
(29) Binding assays. Binding assays were carried out as previously described [Manel, 2003]. Briefly, 5×10.sup.5 cells (293T, HeLa, Jurkat or freshly isolated human erythrocytes) were incubated with 500 μl of H1.sub.RBD, H2.sub.RBD or A.sub.RBD supernatants for 30 min at 37° C., washed with PBA (1% BSA, 0.1% sodium azide in PBS), and incubated with a sheep anti-rabbit IgG antibody conjugated to fluorescein isothiocyanate (Sigma). When indicated, cytochalasin B (20 μM; Sigma) was added to cells for 1 hour prior to binding analyses. Binding was analyzed on a FACSCalibur (Becton Dickinson) and data analysis was performed using CellQuest (Becton Dickinson) and WinMDI (Scripps) softwares.
(30) Infections. 293T cells were transfected in 6-wells plate, and one day after transfection, medium was replaced by high glucose DMEM supplemented with fructose (5 g/l) and non-essential amino acids. The next day, infection was initiated by adding supernatants containing MLV particles pseudotyped with either HTLV-2 or A-MLV envelopes. The following day, fresh medium was added, and 24 hours later cells were fixed and stained for alkaline phosphatase activity and dark focus of infection were counted. Viral particles were obtained by transfecting 293T cells with pLAPSN, pGagPol and either pCSIX.H2 or pCSI.A, and harvesting the 0.45 μm-filtered supernatants 24 hours later.