ENCLOSING HOLDER FOR A SAMPLE CONTAINER

Abstract

Provided herein is technology relating to processing samples and particularly, but not exclusively, to technology for containing and processing a stool specimen. The technology provides an enclosing holder for securing a sample container in a leak-proof manner e.g., during mechanical shaking.

Claims

1. An enclosing holder for a sample container, said enclosing holder comprising: a) a holder base comprising an interior and a top opening, said holder base comprising: i) a first latching engagement feature configured to engage a holder top; ii) a first integrated hinge portion; and iii) in said interior, a first sample container engaging feature; b) a holder top comprising an interior side, said holder top comprising: i) a mated latching engagement feature adapted to removeably engage with said first latching engagement feature of said holder base; ii) a second integrated hinge portion, said second integrated hinge portion flexibly engaged with said first integrated hinge portion of said holder base; iii) on said interior side, a second sample container engagement feature; and iv) a handle c) a spring configured to move the holder top of said enclosing holder to an open position when said first latching engagement feature and said mated latching engagement feature are disengaged; d) a latch release reversibly movable from a first position to a second position, wherein in said second position, said first latching engagement feature is disengaged from said mated latching engagement feature; wherein when said first latching engagement feature is engaged to said second latching engagement feature, said enclosing holder is in a closed configuration having a leak-proof seal between said holder base and said holder top; wherein said container engagement features are configured to limit or prohibit motion of a sealed sample container enclosed in the enclosing holder with respect to said enclosing holder, and wherein said enclosing holder is configured for mounting in a mechanical shaker.

2. The enclosing holder of claim 1, wherein the body of said holder base and/or said holder top are composed of cast metal.

3. The enclosing holder of claim 2, wherein said cast metal is cast aluminum.

4. The enclosing holder of claim 1, wherein said first sample container engagement feature is an integral feature of the said holder base.

5. The enclosing holder of claim 4, where said first sample container engagement feature is configured to engage a bucket of a sample container.

6. The enclosing holder of claim 1, wherein said second sample container engagement feature is an integral feature of said holder top.

7. The enclosing holder of claim 6, where said second sample container engagement feature is configured to engage a lid of a sample container.

8. The enclosing holder of claim 1, wherein said first and said second sample container engagement features are configured to limit or prohibit movement of a lid of a sealed sample container with respect to a bucket of said sealed sample container when the sealed sample container is within said enclosing holder and when said first latching engagement feature is engaged with said mated latching engagement feature.

9. The enclosing holder of claim 1, wherein said handle is an integrated handle with respect to said holder top.

10. The enclosing holder of claim 1, wherein said handle has an under side that the direction traveled by said handle when said holder top is moved from an open state to a closed state, and wherein said latch release is on said underside of said handle.

11. The enclosing holder of claim 10, wherein manipulation to move said latch release from said first position to said second position comprises moving said latch release toward the underside of said handle.

12. The enclosing holder of claim 1, wherein manipulation to engage said first latching engagement feature of said holder base with said mated latching engagement feature of said holder top comprises pressing said holder top to said holder base.

13. The enclosing holder of claim 1, wherein said spring comprises a torsion spring.

14. An enclosing holder for a sealed ergonomic sample container for a stool specimen, wherein said ergonomic sample container can be sealed by hand by screwing a lid onto a bucket, and can be opened by hand by unscrewing said lid from said bucket; said enclosing holder comprising a holder top and a holder base, wherein i) when a sealed ergonomic sample container is in said holder base, said enclosing holder can be closed and a latch engaged using one hand, and ii) when said enclosing holder is closed, said latch can be disengaged and said enclosing holder can be opened using one hand, and wherein said enclosing holder is removably mountable to a mechanical shaker.

15. The enclosing holder of claim 14, wherein said holder top and said holder base comprise mated integrated hinge portions.

16. The enclosing holder of claim 14, further comprising a spring configured to move the holder top to an open position when said latch is disengaged.

17. A system comprising an enclosing holder and an ergonomic sample holder of claim 14.

18. The system of claim 17, further comprising a stool homogenization solution.

19. The system of claim 18, wherein said stool homogenization solution comprises a salt and a preservative or a stabilizing agent.

20. The system of claim 18, wherein said ergonomic sample container is sealed and contains said stool homogenization solution and a stool specimen, and wherein said enclosing sample holder encloses said ergonomic sample container.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0020] These and other features, aspects, and advantages of the present technology will become better understood with regard to the following drawings:

[0021] FIG. 1 is a drawing of an embodiment of an ergonomic sample container comprising a bucket (1) having gripping features (4), and a lid (2) having a central crossed gripping feature (4a).

[0022] FIG. 2 is a perspective interior view of an embodiment of a bucket (1) showing a top surface (1a), gripping features (4) and an engagement portion that is threaded. The interior of the bucket shows radially disposed ridges providing sample disruption features (1c).

[0023] FIGS. 3A-3D show views of an embodiment of the device. FIG. 3A shows drawings of different views of a lid (2); FIG. 3B shows drawings of different views of a floating plate seal (3); FIG. 3C shows drawings of a lid (2) and a floating plate seal (3), both separately and as an assembly with the seal inside the lid; and FIG. 3D shows drawings of different views of a bucket (1).

[0024] FIGS. 4-11 show views of an embodiment of an enclosing holder for an ergonomic stool specimen container as shown in FIGS. 3A-3D.

[0025] FIG. 4 is a left side elevational view showing an embodiment of an enclosing holder comprising holder base (5) and holder top (6). Dimensions of the exemplary embodiment are shown in inches.

[0026] FIG. 5 is a front elevational view of the embodiment of an enclosing holder shown in FIG. 4, showing latch (11) with latch release (11a) on holder top (6) and catch (13) on holder base (6).

[0027] FIG. 6 is a right side elevational view of the embodiment of an enclosing holder shown in FIG. 4, showing the integrated hinge portions (8, 10) on the holder top (6) and base (5), respectively. The holder top (6) comprises a Schrader valve (14) and an integrated handle (7) and a latch (11). Holder base (5) comprises a plurality of feet (20) and catch (13) engaging latch (11).

[0028] FIG. 7 is a rear elevational view of the embodiment of an enclosing holder shown in FIG. 4. Dimensions of the exemplary embodiment are shown in inches. Torsion springs (9) are positioned at the hinge formed with holder top and base hinge portions (8 and 10, respectively).

[0029] FIG. 8 is a top plan view of the embodiment of an enclosing holder shown in FIG. 4. Dimensions of the exemplary embodiment are shown in inches. In the embodiment shown, enclosing holder top (6) comprises Schrader valve (14), integrated hinge portions (8) and an integrated handle (7) comprising slip resistance features (e.g., ridges) (7a).

[0030] FIG. 9 is a bottom plan view of the embodiment of an enclosing holder shown in FIG. 4. In the embodiment shown, holder base (5) comprises a plurality of feet (20).

[0031] FIG. 10 is a top perspective view of the embodiment of an enclosing holder shown in FIG. 4. In the embodiment shown, enclosing holder top (6) comprises integrated hinge portions (8) and an integrated handle (7) comprising slip resistance features (7a). Holder base (5) comprises integrated hinge portions (10) mated to the hinge portions (8) of top (6). In the embodiment shown, holder base (5) comprises external impressions (19).

[0032] FIG. 11 is a bottom perspective of the embodiment of an enclosing holder shown in FIG. 4. In the embodiment shown, the eight evenly-spaced feet (20) comprise threaded holes (21) for secure mounting of the holder to a surface in or on a mechanical shaker, e.g., a hub or platform in a mechanical shaker.

[0033] FIG. 12A shows a top perspective view of an embodiment of an enclosing holder.

[0034] FIG. 12B shows a cross-sectional perspective view of an embodiment of an enclosing holder. In this view, a sample container comprising bucket (1) and top (2), also shown in cross section, is shown within the enclosing holder.

[0035] FIG. 13A shows steps of placing a sample container within an enclosing holder and closing the top.

[0036] FIG. 13B shows steps of opening an enclosing holder and removing a sample container therein from the enclosing holder.

[0037] FIG. 14 shows an embodiment of an enclosing holder in a closed state. In the embodiment shown, top (6) of the enclosing holder comprises an integral handle (7) and a latch (11). As depicted, latch (11) comprises a latch release (11a) that can be actuated, e.g., lifted, to disengage latch (11) from catch (13) on holder base (5). In some embodiments the top (6) comprises a spring, e.g., a compression or torsion spring (9) in the handle (7), to maintain latch (11) in a position to engage catch (13), e.g., when the latch is in an engagement position and when there is an absence of pressure (e.g., by a user) on latch release (11a). In preferred embodiments, latch release (11a) is an integral portion of latch (11).

[0038] FIG. 15 shows a top perspective view of an embodiment of an enclosing holder in a closed configuration.

[0039] FIG. 16 shows a top perspective view of an embodiment of an enclosing holder in an open configuration. Within the interior of holder base (5), integrated container-engaging features (18) (e.g., for engaging the gripping features (4) of a sample container as shown in FIG. 1) are shown. In the embodiment shown, the latch (11) comprises a latch pin configured to mate and engage with a keyhole-style latch pin hole as a catch (13).

[0040] FIG. 17 shows an embodiment of an enclosing holder with a container in place in the base of the holder. In the embodiment shown, holder top (6) comprises an O-ring (15) that provides a seal between the holder top (6) and base (5) when the enclosing holder is in a closed position. The holder top (6) further comprises a compression spring (17) that exerts downward pressure on the center of lid (2) of a sample container and lid engaging features (16) that prevent rotation of lid (2) with respect to bucket (1) of the sample container, when the sealed sample container is enclosed within the enclosing holder. Integral ribs (25) in the holder top further secure the sample container.

[0041] FIG. 18A shows a bottom perspective view of an embodiment of an enclosing holder. In the embodiment shown, eight evenly-spaced threaded holes (21) are provided for secure mounting of the holder to a surface, e.g., a hub or platform in a mechanical shaker. A machined pilot counterbore hole (pilot hole (22)) is provided to facilitate proper alignment of the enclosing holder during mounting of the holder in the shaker.

[0042] FIG. 18B provides a detail view of the underside of the latch pin hole of the embodiment shown in FIG. 18A, showing a cam plate (23) for secure engagement of the latch pin with the latch pin hole.

[0043] FIG. 19 shows a cross-sectional view of an embodiment of an enclosing holder. In this view, a sample container, also shown in cross section, is shown within the closed enclosing holder. Container-engaging features (16) in holder top (6) are shown engaged with gripping features (4a) on the lid (2) of the sample container. A ball-nose detent spring (24) and a countersink in the bottom of handle (7) allows ball to “click” into position, preventing handle movement.

DEFINITIONS

[0044] To facilitate an understanding of the present technology, a number of terms and phrases are defined below. Additional definitions are set forth throughout the detailed description.

[0045] As used herein, “a” or “an” or “the” can mean one or more than one. For example, “a” widget can mean one widget or a plurality of widgets.

[0046] As used herein, the term “analyte” is to be construed broadly as any compound, molecule, element, ion, or other substance of interest to be detected, identified, or characterized.

[0047] As used herein, the terms “subject” and “patient” refer to an animal, preferably a human, from which a stool specimen is collected. In some instances, the subject is also a “user” (and thus the user is also the subject or patient).

[0048] As used herein, the transitional phrase “consisting essentially of” as used in reference to compositions, steps, or other features is to be read as “consisting of” the specified materials, steps, or features, plus only unavoidable additional elements that do not materially affect the basic and novel characteristic(s) of the materials, methods, steps, etc., e.g., unavoidable contaminants, unavoidable steps.

[0049] As used herein, the term “sample” and “specimen” are used interchangeably, and in the broadest senses. In one sense, sample is meant to include a specimen or culture obtained from any source, as well as biological and environmental samples. Biological samples may be obtained from animals (including humans) and encompass fluids, solids, tissues, and gases. Biological samples include blood products, such as plasma, serum, stool, urine, and the like. Environmental samples include environmental material such as surface matter, soil, mud, sludge, biofilms, water, crystals, and industrial samples. Such examples are not however to be construed as limiting the sample types applicable to the present invention.

[0050] As used herein, the term “kit” refers to any delivery system for delivering materials. In the context of sample collection systems, such delivery systems include systems that allow for the storage, transport, or delivery of devices or the samples collected therewith (e.g., buffers, stabilizers, preservatives, etc. in the appropriate containers) and/or supporting materials (e.g., written instructions for performing a procedure, etc.) from one location to another. For example, kits include one or more enclosures (e.g., boxes) containing the relevant devices and supporting materials. As used herein, the term “fragmented kit” refers to a delivery system comprising two or more separate containers that each contains a subportion of the total kit components. The containers may be delivered to the intended recipient together or separately. For example, a first container may contain materials for sample collection and a buffer, while a second container contains sampling devices, separate shipping materials, etc.

[0051] The term “system” as used herein refers to a collection of articles for use for a particular purpose. In some embodiments, the articles comprise instructions for use, as information supplied on e.g., an article, on paper, or on recordable media (e.g., diskette, CD, flash drive, etc.). In some embodiments, instructions direct a user to an online location, e.g., a website, a remote server of a service provider, etc.

[0052] The term “ergonomic” as used herein in reference to designs or features, e.g., of an article or system, refers to designs or features optimized for use by the intended human user, e.g., to avoid unnecessary stress, fatigue, or unintended improper use, or to accommodate special needs of a human user. For example, a device having ergonomic features optimized for geriatric users may have features especially designed or selected to accommodate conditions and/or disabilities common in a population of geriatric persons, e.g., arthritis, muscle weakness, carpal tunnel syndrome, epicondylitis, vision impairment, etc.

[0053] As used herein, the term “central axis,” as used in reference to a container or ergonomic device, refers to an axis about which the container device has rotational symmetry. For example, in ergonomic devices depicted in FIGS. 1-3, the central axis is defined by the line between the point at the center of the bottom of the bucket and the point at the center of the lid, when the lid is engaged with the bucket.

[0054] The term “geriatric” as used in reference to a subject or patient or a user of a device, refers to an aged or elderly person, e.g., a person over about 65 years of age. There is no defined age for “geriatric” thus in some instances it may be e.g. a person over about 50 years of age.

DETAILED DESCRIPTION OF THE INVENTION

[0055] Embodiments of the invention are described in this Detailed Description of the Invention, and in the Summary above, which is incorporated here by reference. Although the invention has been described in connection with specific embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Those skilled in the art who review this disclosure will readily appreciate that many modifications are possible (e.g., variations in sizes, dimensions, structures, shapes and proportions of the various elements, values of parameters, mounting arrangements, use of materials, orientations, etc.) without materially departing from the novel teachings and advantages of the subject matter of the technology. Accordingly, all such modifications are intended to be included within the scope of the present invention as defined in the appended claims.

[0056] Provided herein is technology relating to processing samples and particularly, but not exclusively, to technology for processing a collected stool specimen. In particular, the technology is directed to processing specimens in sample containers received from subjects or patients who have collected stool samples, e.g., their own or a family member's, in the home.

[0057] A particular challenge when subjects or patients collect stool samples is the need for a collection container that is 1) sufficiently easy to manipulate that the container can be reliably and securely closed and sealed by subjects who may have conditions and/or disabilities that make manipulating containers difficult, e.g., arthritis, muscle weakness, carpal tunnel syndrome, epicondylitis, vision impairment, etc., but that, 2) when closed, is sealed with a sufficiently reliable seal that there is little or no chance of leakage during transport and/or downstream processing, e.g., shaking homogenization. As discussed above, such collections may be facilitated by the use of an ergonomic container, e.g., as provided in International Patent Publication WO 2015/031832, which is incorporated herein by reference in its entirety for all purposes.

[0058] Provided herein is technology directed to improved safety and efficiency in processing collected specimens, e.g., in a clinical or research lab. The technology thus provides systems and methods for processing a stool sample, e.g., by dispersing or homogenizing the stool in buffer, directly in the sample container in which it has been collected by a subject, without the need to transfer the sample to a different container, or even to open the collection container received from the subject. The technology provides an enclosing holder to support and contain a sealed sample collection container, e.g., during mechanical shaking. In preferred embodiments, the technology is directed to processing samples in ergonomic sample containers such as the exemplary embodiments portrayed in FIGS. 1-3, in which the bucket of the container comprises gripping features designed to facilitate grasping of the bucket by an adult person with limited hand size and/or strength, e.g., a geriatric patient, such that the container can be closed and sealed by hand by such an person. In particularly preferred embodiments, the gripping features on the bucket are of sufficient depth and placement around the circumference of the bucket that the bucket may be approached from essentially any direction, and the bucket may be securely gripped by holding gripping features that span less than one half the circumference of the bucket, preferably less than one third the circumference of the bucket.

[0059] The containers further include features configured to facilitate mixing the contents within the sealed container without opening the container, e.g., through agitation of the sealed container (by, e.g., shaking, rotating, vibrating, etc.). For example, the sample container may comprise interior ridges, bumps, or other features that intrude into the interior space within the closed container. Containers are typically constructed of unbreakable material, e.g., plastic and/or rubber. Suitable materials may be natural or synthetic, and include but are not limited to, e.g., polypropylene, polyethylene, polycarbonate, polystyrene, polyvinylchloride, polyamides, etc. In certain embodiments, the bucket has an internal volume of at least 300 ml, and in preferred embodiments, said bucket has an internal volume between about 300 ml and about 1400 ml. In certain embodiments, the bucket has an opening that is at least as wide as the height of the bucket. In some embodiments, the diameter of the opening (e.g., the internal diameter, ID), is greater than or equal to the height of the bucket.

[0060] The technology provides an enclosing holder adapted to receive and enclose a sample container during processing manipulations conducted for mixing contents within the sealed container, e.g., agitation of the sealed container (by, for example, shaking, rotating, vibrating, gyroscopic mixing, etc.). In some embodiments, the enclosing holder is configured to securely seal, such that any contents leaking from a sample container, e.g., during vigorous agitation, are completely contained within the enclosing holder, thereby reducing risk of accidental worker exposure to leaked biological samples.

[0061] In preferred embodiments, an enclosing holder is configured with internal features that mate to external features on the sample container, such that a sample container is securely held within the enclosing holder when the enclosing holder is secured in a closed state. For example, FIG. 16 shows in interior view of an embodiment of an enclosing holder, the base (6) of the holder having integrated container-engaging features (18). FIG. 12B shows a cross-sectional view of an embodiment of an enclosing holder that comprises ridges configured to mate with gripping features (4) on the exterior of a sample container as shown in FIGS. 1-3.

[0062] When a sealed container is fitted within a closed enclosing holder, rotational movement of the bucket within the enclosing holder e.g., around a central axis, is restricted or, preferably, prevented. The number of container-engaging features present in the enclosing holder need not match the number of external features (e.g., gripping features (4)) on the sample container. It is contemplated that one or any subset of the external features on the exterior of a sample container may be mated with a container-engaging feature within the top and/or base of an enclosing holder.

[0063] In some embodiments, an enclosing holder comprises a holder top (6) attached to holder base (5), e.g., via a hinge. In preferred embodiments, the holder top (6) and/or the holder base (5) comprise integrated hinge portions ((8) and (10), respectively) that together form a hinge attaching the top to the base. As used herein, the terms “integrated” and “integral,” as used in reference to hinges, handles, and other features of a holder top and/or holder base, are used interchangeably to refer to features that are attached to the top or base in a non-movable, non-removable manner, e.g., that are cast as part of the top or base, or are machined into the top or base. In some embodiments, integrated features may be separately manufactured and then affixed to an existing top or base, e.g., by brazing or welding. In preferred embodiments, the holder base and/or the holder top are cast with integrated components, e.g., hinge portions, in place.

[0064] Technology herein provides an enclosing holder configured for particular ease of use, and configured to avoid accidental misuse, e.g., in a laboratory environment. In preferred embodiments, the technology provides an enclosing holder comprises a feature, e.g., a spring, which holds the holder top (6) in a clearly open position when the holder top (6) is not engaged to the holder base (5), e.g., when a latch (11) on the holder top (6) in not engaged with a corresponding catch (13) on the holder base (6). As used herein, a “clearly open position” may be partially open or fully open, e.g., to the limit permitted by the hinge, so long as simple inspection, e.g., momentary visual inspection, shows that the holder is not closed and the holder top is not engaged to the holder base. Thus, the technology provides an enclosing holder configured to reduce or eliminate the possibility of an enclosing holder containing a sample container being shaken (e.g., in a mechanical shaker) when the holder top (6) is not properly seated and latched to the holder base (5).

[0065] As used herein, the terms “latch” and “catch” refer to mated latching engagement features on a top (6) and base (5), respectively, of an enclosing holder, and are not limited to particular structural features. For example, a hook-shaped feature, e.g., as shown on latch (11) on top (6) in FIG. 6, if used on a base (5) would be termed a “catch”.

[0066] In some embodiments, a holder top (6) comprises a handle (7) and a latch (11) for latching engagement of the top (6) to the base (5) of the enclosing holder when the enclosing holder is in a closed configuration. For example, in some embodiments, when the holder top is positioned on the top of the holder base in preparation for sealing, and the top is then pressed upon the base, a latch (11) on the holder top engages a catch (13) on the holder base to engage the enclosing holder in a closed configuration. In preferred embodiments, pressing on the holder top to seat the top on the base is sufficient to engage the latch to the catch, and to seal the enclosing holder.

[0067] In some embodiments, the mated latching engagement features on the top and base of the enclosing holder comprise a latch release. In preferred embodiments, the enclosing holder comprise a latch release (11a) configured, e.g., with a spring, to maintain the latch release in an unreleased position until the latch release is actuated or pressed by a user. A latch release (11a) is not limited to any particular configuration or size. In certain preferred embodiments, the latch release covers a substantial portion the underside of a handle (7), e.g., so that it is readily actuatable by applying upward pressure from below the handle. For example, as shown in FIG. 9, the latch release (11a) spans substantially the full width of the underside of handle (7). In particularly preferred embodiments, latch release (11a) is actuatable with one hand, e.g., without the need to secure or restrain the enclosing holder with a second hand.

[0068] The technology provides an enclosing holder comprising container-engaging features. For example, in some embodiments, a lid-engaging feature (16) is configured to engage with lid (2) of a sealed container within the enclosing holder. In some embodiments, for example, the interior of the holder top (6) comprises lid engaging features (16) that engage crossed gripping features (4a) on lid (2), as exemplified in the container shown in FIG. 1. In preferred embodiments, the lid engaging features (16) and bucket-engaging features (18) in the interior of the holder base are configured to restrict or prevent any movement, e.g., rotation, of lid (2) relative to bucket (1) of a sealed sample container when the sealed sample container is secured inside a closed enclosing holder.

[0069] In some embodiments, an enclosing holder is configured to apply pressure to the bottom and/or the top of the sealed container, e.g., to limit any motion of the sealed container within the enclosing holder, and/or to support or reinforce the seal between the bucket (1) and lid (2) of the sample container that is within the enclosing holder. For example, in some embodiments, one or more compression springs (17) are included in the bottom of the enclosing holder base and/or the holder top to maintain a compressive pressure upon the sealed container that is within a closed enclosing holder. In preferred embodiments, the enclosing holder provides pressure on the sample container that is in alignment with the central axis of the sealed container, so as to press lid (2) toward bucket (1), and vice versa. In particularly preferred embodiments, the enclosing holder has a compression spring (17) in the top (6) of the enclosing holder, while in some embodiments, the pressure is applied via, e.g., a resilient material such as rubber or plastic, open or closed cell foam, padding, etc.

[0070] In some embodiments, e.g., as shown in FIGS. 15-19, engagement of mated latching engagement features on the holder's top and base is accomplished by rotation of a handle attached to a latch. For example, in some embodiments, the holder top (6) and holder base (5) comprise mated latching engagement features, e.g., as shown in FIG. 16, which are engaged by twisting the handle from a first position into a second position so as to permit latch (11) to pass through an opening in catch (13), then moving the handle to a position, e.g., back to the first position, in which the latch (11) is engaged to the catch (13). In preferred embodiments, when holder top (6) is seated on the holder base (5), returning handle (7) to the first position engages latch (11) to the catch (13). In particularly preferred embodiments, the handle arrangement is equipped, e.g., with a spring, to maintain the handle in the first (latched) position when a user is not actuating the engagement or latch release functions.

[0071] In preferred embodiments, an enclosing holder comprises a gasket that is disposed between the holder top (6) and the holder base (5) when the enclosing holder is in a closed configuration. For example, in some embodiments, the holder base (5) and/or top (6) comprise an O-ring seal (15), e.g., as shown in FIGS. 12B, 15, and 17. In preferred embodiments, the holder top (6) comprises an O-ring seal fitted in a suitable groove at or near the perimeter of the holder top, e.g., as shown in FIG. 17. The O-ring seal is not limited to any particular material and may be, e.g., rubber, plastic, etc. In preferred embodiments, the O-ring seal is composed of silicone. In some embodiments, the O-ring seal is Shore 50A durometer for low compression force and is mounted in machined dovetail groove.

[0072] In some embodiments, an enclosing holder comprises a port or valve for altering the gas contents of a closed enclosing holder. For example, in some embodiments, it is useful to create a negative pressure within the holder as a means of preventing out-flow of contents in the event of a leak from an enclosed container, while in other embodiments it is useful to vent pressure, e.g., pressure arising from an increase in temperature within the sealed enclosing holder. In some embodiments, it may be useful to introduce a particular gas, e.g., an inert gas such as nitrogen, into the vessel. To facilitate the movement of gases into or out of a sealed enclosing holder without opening the vessel, in certain preferred embodiments, the enclosing holder comprises a suitable valve, e.g., a Schrader valve (14), for adding or removing gas (e.g., air, nitrogen) from the enclosing holder when the enclosing holder is in a closed, e.g., locked, configuration.

[0073] In some embodiments, the enclosing holder is provided with one or more gripping features, to facilitate handling and manipulating the holder or lid, e.g., to facilitate the processes of closing the holder. For example, in some embodiments, the enclosing holder comprises ridges or other slip-resistance features or textures on a handle to reduce possible slippage, e.g., when closing or opening the enclosing holder, and/or when moving the holder in or out of a shaker device. In some embodiments, an enclosing holder comprises exterior channels, e.g., channels on the holder base that may be used for securing the holder base, either by hand or by using a device that engages the channels. Such exterior features are not limited to channels and may comprise surface features of any configuration, e.g., dimples, bumps, knobs, ridges, holes, etc. In preferred embodiments, exterior channels on the holder base align with container-engaging features on the interior of the holder base.

[0074] The enclosing holder is preferably constructed of unbreakable material, selected to withstand vigorous shaking, rotation, or other agitation used, e.g., in homogenizing a sample in a sealed sample container. For example, in preferred embodiments, the holder base (5) comprises or is composed of metal, e.g., stainless steel, aluminum, titanium, while in other embodiments, the base comprises or is composed of plastic. In particularly preferred embodiments, holder base (5) and/or top (6) are composed of aluminum. In preferred embodiments, the holder base (5) and/or top (6) are cast metal. In some embodiments, cast components are further processed, e.g., machined, to achieve a desired final form. In some embodiments, the holder top and/or older base are further surface-treated, e.g., coated, painted, enameled, or anodized.

[0075] The technology finds use in systems for processing a sample, e.g., a system comprising an enclosing holder in combination with, e.g., a mechanical shaker and/or a sample container.

EXAMPLE 1

A. Sample Container

[0076] As discussed above, technology herein is directed to overcoming the challenge of providing a collection container that can be reliably used and sealed by any subject in a diverse population of subjects, including subjects having conditions that may severely compromise their ability to align and/or to firmly close a container, e.g., geriatric patients. For containers that are to be transported, e.g., from a subject's home to a laboratory, using standard commercial shipping methods, it is especially important for the subject to achieve a leak-resistant seal on the container without the need for special tools or assistance. As discussed above, technology herein provides an ergonomic collection device that can be securely closed using minimum force.

[0077] An exemplary embodiment of a sample container for use in the enclosing holder is shown in FIGS. 1 and 3A-D. The container shown comprises a bucket (1) and a lid (2), with a seal (3). As shown in FIG. 3D, the bucket (1) has a wide opening for receiving a stool sample. In the embodiment shown, the bucket is wider than it is tall, having a height of 4.75″ and an outer diameter of 5.5″ exclusive of the flange, (6.11″ at the edge of the flange). The volume of the bucket is approximately 1400 mL (1.4 L).

[0078] The bucket (1) features a series of eight gripping ridges disposed around the circumference, starting about 1.13″ below a flange and extending to the base of the bucket. The sides of the bucket (at the outermost dimensions that exclude the threads and flange) are essentially straight and slightly off of parallel, with the base outer diameter being slightly smaller than the outer diameter at the top edge (5.09″ vs. 5.5″).

[0079] The interior of the bucket displays a series of protruding ridges that correspond to the grooves on the outside of the bucket (such as are shown in FIG. 2). Also as shown in FIG. 5, the interior side of the bucket comprises a smooth circumferential vertical surface immediately below the top edge.

[0080] As shown in FIG. 3A, the lid (2) has a cross-shaped handle gripping feature on its top, with four arms at right angles to each other and extending from a central circular hub to the edge of the lid. The height of the gripping feature from the surface of the lid is approximately 0.6″ at the hub, with each arm tapering slightly downward in height toward the edge of the lid. The lid further comprises arrows and markings indicating the direction the lid is to be turned to engage or disengage the lid from the bucket. As shown, the lid is 5.75″ in diameter; 6.125″ to edge of flange on its bottom edge. The lid is 0.85″ high to top of body of the lid and 1.45″ high to top of handle.

[0081] FIG. 3B shows a floating plate seal for use with the lid of FIG. 3A and the bucket of FIG. 3D. The floating plate is 5.62″ diameter to edge of plate and has a gasket seal of 5.393″ diameter. The gasket seal has a “7” shape in cross-section, such that it can contact and seal against both the top edge and interior vertical surface of the bucket. The overall height of the floating plate with the gasket is approximately 0.5″. FIG. 3C shows the lid and the floating plate seal separately, and as assembled into a lid assembly ready for use, with the floating plate inside the lid.

B. Enclosing Holder

[0082] Technology herein provides an enclosing holder that is directed toward both 1) reinforcing the integrity of the seal of a sample container during shaking, and 2) containing any sample leaking from the container such that, in the event of a leak, the mechanical shaker remains clean and usable, and contamination is contained within an article (the enclosing holder) that may be easily replaced with a clean enclosing holder, minimizing the effect of a leakage event on laboratory work-flow. Further, the contaminated enclosing holder is readily cleanable for future use.

[0083] In the embodiment shown, e.g., in FIGS. 4-19, hinges that are integrated with the top and base of the holder are stronger than, for example, hinges that are removably attached, e.g., by screws or bolts. In addition to being stronger and being simpler to manufacture, integrated hinges provide fewer seams, and are therefore easier to clean.

[0084] Use of integrated container-engaging features in the holder base (5) and/or holder top (6) avoids the need to use additional removable parts, e.g., plastic or metal adapters, which typically require adjustment, which are more readily damaged during use, and which are more difficult to clean.

[0085] In the embodiment shown, e.g., in FIGS. 4-14, the holder top (6) comprises an integrated handle (7) with ridges (7a) on the handle, e.g., to reduce slippage on the surface when the top is pressed to close the holder. The handle (7) of the top (6) is configured with a latch (11) that engages a catch (13) on the holder base when the top (6) is pressed to seat the top (6) on the base (5). The hinge of the enclosing holder is fitted with torsion springs (9) such that the top (6) will be held in an open position, and will pop open when latch (11) is not engaged to catch (13) on the base. Latch (11) comprises a latch release (11a) arranged on the underside of handle (7) such that an lifting or upward pressing motion on the underside of handle (7) will release the latch and allow the top (6) to move easily to a fully open position, propelled by the torque exerted by the torsion springs (9).

[0086] The enclosing holder is configured to be mounted securely, e.g., bolted or clamped, to a mechanical shaker. In preferred embodiments, the mechanical shaker comprises a cabinet enclosure closable around the mounted enclosing holder. In particularly preferred embodiments, when an enclosing holder is mounted in the mechanical shaker and is in an open configuration, the cabinet of the mechanical shaker cannot be closed, e.g., the top (6) of the enclosing holder, when in an open position, impedes a cabinet door or cover, such that the shaker cabinet cannot be closed and the shaker cannot be inadvertently operated when the enclosing holder within it is open.

C. Method of Processing a Stool Sample in a Buffer

[0087] The technology herein finds use in the processing of samples, e.g., human stool samples, in a buffer, e.g., a stabilizing buffer (see, e.g., U.S. Pat. Nos. 6,406,857 and 6,551,777; and Olson J, et al., Diagn Mol Pathol 14:183-91 (2005), each of which is incorporated herein by reference in its entirety).

[0088] 1. In an ergonomic sample container as described in above in Example 1, part A, collect a sample of human stool, preferably having a mass of at least 4 grams;

[0089] 2. To the stool sample in the sample container, add a stabilizing buffer, e.g., a Tris buffer comprising EDTA, in a volume of at least about 4 mL of buffer per gram of stool sample.

[0090] 3. Seal the sample container by engaging the lid to the bucket, e.g., by engaging the threaded engagement portion of the bucket with a mated threaded portion of the lid, with a seal disposed therebetween to provide a sealed container containing the stool sample and buffer;

[0091] 4. Place the sealed sample container in a sample mixer (e.g., a mechanical shaker) that comprises an enclosing holder as described above in Example 1, part B. Close the enclosing holder such that the latch (11) engages the catch (13). For an enclosing holder as shown in FIGS. 4-14, the enclosing holder is closed and the latch and catch are engaged by swinging the top (6) down over the top of the sample container and pressing the top (6), e.g., at handle (7), until latch (11) engages the catch (13).

[0092] 5. Close the sample mixer cabinet;

[0093] 6. Operate the sample mixer for a period of time during which the stool sample and buffer are homogenized.

[0094] 7. Open the sample mixer cabinet;

[0095] 8. Open the enclosing holder. For an enclosing holder as shown in FIGS. 4-14, the latch and catch are disengaged by lifting up on the latch release (11a) on the underside of handle (7), such that the latch and catch are disengaged and the top (6) of the enclosing holder swings open by force of the torsion springs (9), an operation typically accomplished using one hand.

[0096] 9. Remove the sealed sample container containing the homogenized stool sample from the base of the enclosing holder.

[0097] The homogenized stool sample may then be analyzed, e.g., as described in WO 2012/155072, which is incorporated herein by reference in its entirety.

[0098] Although the disclosure herein refers to certain illustrated embodiments, it is to be understood that these embodiments are presented by way of example and not by way of limitation. All publications and patents mentioned in the above specification are herein incorporated by reference in their entirety for all purposes. Various modifications and variations of the described compositions, methods, and uses of the technology will be apparent to those skilled in the art without departing from the scope and spirit of the technology as described. Although the technology has been described in connection with specific exemplary embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention that are obvious to those skilled in engineering, material science, pharmacology, biochemistry, medical science, or related fields are intended to be within the scope of the following claims.