TISSUE ARRAY USING A CARRIER MEDIUM AND METHOD FOR PROVIDING THE SAME
20170234779 · 2017-08-17
Inventors
Cpc classification
G01N2001/368
PHYSICS
International classification
Abstract
An exemplary tissue array, and a method for producing the same, can be provided which can include providing an accepter biological structure(s), providing a donor tissue(s), removing a portion(s) of the donor tissue(s), and removing a portion(s) of the accepter biological structure(s). The removed portion(s) of the accepter biological structure(s) can have a size that is substantially similar to a size of the removed portion(s) of the donor tissue(s). The removed portion(s) of the donor tissue(s) can be inserted into the accepter biological structure(s) at a location substantially corresponding to the removed portion(s) of the accepter biological structure(s).
Claims
1. A method for providing a biological arrangement, comprising: providing at least one accepter biological structure; providing at least one donor tissue; removing at least one portion of the at least one donor tissue; removing at least one portion of the at least one accepter biological structure, wherein the at least one removed portion of the at least one accepter biological structure has a size that is substantially similar to a size of the at least one removed portion of the at least one donor tissue; and inserting the at least one removed portion of the at least one donor tissue into the at least one accepter biological structure at a location substantially corresponding to the at least one removed portion of the at least one accepter biological structure.
2. The method of claim 1, wherein the at least one biological structure can be provided by inserting at least one accepter tissue into the at least one accepter biological structure, and heating the at least one accepter biological structure to embed the at least one accepter tissue into the at least one accepter biological structure.
3. The method of claim 2, further comprising heating the at least one accepter biological structure in a cassette.
4. The method of claim 2, further comprising at least one of pushing or compressing the at least one accepter biological structure so as to form a substantially flat surface thereon.
5. The method of claim 1, wherein the at least one accepter biological structure is a single accepter biological, and the at least one removed portion includes a plurality of removed portions.
6. The method of claim 5, wherein the at least one donor tissue includes a plurality of different donor tissues.
7. The method of claim 1, wherein the at least one accepter biological structure includes at least one of (i) liver tissue, (ii) spleen tissue, or (iii) a homogeneous tissue.
8. The method of claim 1, further comprising heating the at least one accepter biological structure after the at least one removed portion of the at least one donor tissue is inserted into the at least one accepter biological structure.
9. The method of claim 1, wherein the at least one accepter biological structure includes paraffin.
10. The method of claim 1, wherein the at least one removed portion of the at least one donor tissue and the at least one removed portion of the at least one accepter biological structure is removed by a punch tool.
11. The method of claim 10, wherein the punch tool is shaped as at least one of (i) a circle, (ii) a square, (iii) a rectangle, or (iv) a triangle.
12. A tissue arrangement, comprising: at least one accepter biological structure which includes at least one accepter tissue and at least one donor tissue, wherein the at least one donor tissue is substantially surrounded by, and substantially structurally supported by, the at least one accepter tissue.
13. The tissue arrangement of claim 12, wherein the tissue arrangement is a tissue microarray.
14. The tissue arrangement of claim 13, wherein the tissue microarray includes over 100 donor tissues.
15. The tissue arrangement of claim 12, wherein the at least one accepter tissue includes at least one of (i) liver tissue, (ii) spleen tissue, or (iii) a tissue.
16. A tissue slide arrangement, comprising: at least one slide which includes at least one tissue arrangement, the at least one tissue arrangement including at least one accepter tissue and at least one donor tissue, wherein the at least one donor tissue is substantially surrounded by, and substantially structurally supported by, the at least one accepter tissue.
17. The tissue slide arrangement of claim 16, wherein the at least one slide includes at least one further tissue arrangement, and wherein the at least one tissue arrangement is used as a control to be compared to the at least one further tissue arrangement.
18. The tissue slide arrangement of claim 16, wherein the at least one slide includes a plurality of slides, and each of the slides includes a different reagent.
19. A non-transitory computer-accessible medium having stored thereon computer-executable instructions for creating a biological arrangement, wherein, when a computer arrangement executes the instructions, the computer arrangement, upon an execution of the instructions, is configured to perform procedures comprising: providing at least one accepter biological structure including at least one accepter tissue surrounded by a support structure; providing at least one donor tissue; removing at least one portion of the at least one donor tissue; determining a boundary between the at least one accepter tissue and the support structure; removing at least one portion of the at least one accepter tissue, wherein the at least one removed portion of the at least one accepter tissue has a size that is substantially similar to a size of the at least one removed portion of the at least one donor tissue; and inserting the at least one removed portion of the at least one donor tissue into the at least one accepter tissue at a location substantially corresponding to the at least one removed portion of the at least one accepter tissue.
20. The computer-accessible medium of claim 19, wherein the determining procedure includes differentiating between the at least one accepter tissue and the support structure such that only the at least one accepter tissue is removed during the removal of the at least accepter tissue.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0019] Further objects, features and advantages of the present disclosure will become apparent from the following detailed description taken in conjunction with the accompanying Figures showing illustrative embodiments of the present disclosure, in which:
[0020]
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[0027]
[0028] Throughout the drawings, the same reference numerals and characters, unless otherwise stated, are used to denote like features, elements, components or portions of the illustrated embodiments. Moreover, while the present disclosure will now be described in detail with reference to the figures, it is done so in connection with the illustrative embodiments and is not limited by the particular embodiments illustrated in the figures or the appended claims.
DETAILED DESCRIPTION OF EXEMPLARY EMBODIMENTS
[0029] Exemplary method and apparatus, according to an exemplary embodiment of the present disclosure, can provide and/or ensure that the orientation and proper placement of tissues for use, for example, in a tissue array or a TMA, can be secured when assembled into a multi tissue block. The exemplary method and apparatus can utilize various pieces or portions of accepter tissue (e.g., large or other sized pieces of tissue) that can be placed in a cassette. The exemplary accepter tissue can then be processed similar to normal tissue undergoing a standard paraffin embedding process resulting in a standard paraffin block. Alternatively, the accepter tissue and the donor tissue can be frozen in an ice block. Alternatively, the accepter tissue can be any other suitable medium which can serve as a support for the donor tissue.
[0030] As shown in
[0031] The exemplary accepter block 100 can then serve as an accepter for the other samples taken from one or more donor blocks. For example, as shown in
[0032] The exemplary tissue array can be created or otherwise provided using the following exemplary method. For example, tissue 205 from donor block 200 can be removed from a desired area and with a desired size. For example, a portion 215 of donor tissue 205 can be removed through a hole 210 created in donor block 200. This can be performed, for example, with various dermatological punch devices, which can be, for example, circular knives in various diameters. Alternatively, exemplary punch devices shaped other than circular can be used (e.g., square, rectangle, triangle etc.). Punch devices of the same or similar size/diameter/shape can then be used to extract a similarly sized circular area 115 from a hole 110 in accepter block 100. The punched out area 115 from accepter block 100 can be discarded or used for other applications. The empty area within accepter block 100 can then be filled with the portion of tissue 215 of a similar size and shape taken from donor block 200. This procedure can be repeated with various different donor samples, and can be done with variably-sized donor tissue.
[0033] When all donor samples are excised and placed into similar sized empty spaces in the accepter tissue, an accepter block with several circular samples is created. In an exemplary embodiment of the present disclosure, the exemplary donor punches can fit and match neatly in the pre-punched spaces of the accepter block. The accepter block formed from paraffin wax, accepter tissue, and donor tissue (e.g., accepter block 300 of
[0034] In conventional tissue arrays, the tissue may not be easily maintained in one level, if at all. This can result in, for example, all of the various tissues sticking out of the block, and the tops of the various tissues being at different levels. Thus, to obtain a tissue sample containing all the tissues embedded in a prior art tissue block, various levels have to be removed until a block is achieved having all of the tissues on the same level. This can involve iteratively cutting and discarding the top layer until the desired top layer is achieved having all of the tissues on the same top level. Thus, conventional blocks can be very wasteful as a significant portion of the tissue has to be removed to achieve a block having all of the tissue on the same level. In contrast, the exemplary method and apparatus can easily put or maintain the tissues in one level during the exemplary re-embedding process, and little to no tissue is wasted. Prior art methods attempted to place the tissue on one level during the re-embedding process. However, such attempts were generally unsuccessful, and any attempted improvement in the maintaining of the tissues on the same level was tedious and time consuming.
[0035] The exemplary method and apparatus, according to an exemplary embodiment of the present disclosure, can also be used as an exemplary test or control tissue (e.g., a positive control or a negative control). For example, when testing and/or staining the tissue of a subject or person, it can be beneficial to ensure (a) that the correct reagent was used; (b) that the correct amount of reagent was used (e.g., no overstaining or understaining); and (c) that the reagent had not expired or lost is effectiveness. Without a control tissue, a person cannot tell if the reagent used is still viable, or if the correct amount of reagent was used. As the exemplary method and apparatus can place more tissue samples in a smaller space (e.g., 2, 3, 4, 5, 6, 7, etc. tissue samples in a small confined space), more tissue samples can be placed on a slide as a control, as less space can be needed. In contrast, conventional tissue arrays need a larger area for the same amount of tissue samples, and thus may not be suitable for use as control tissues.
[0036] The exemplary method and apparatus, according to an exemplary embodiment of the present disclosure, can utilize a mechanical device (e.g., manual or automated), which can sample punches of very small diameters (e.g., about 0.3 mm) to larger diameter punches (e.g., about 1 mm), although smaller and larger punch sizes can be utilized. These exemplary micro-punches can be taken from the donor tissues and placed into to an accepter paraffin block. Because of the size of the tissue donor punches, several hundred of array punches can be placed into an accepter block. As an accepter, a plain paraffin block can be used. As described herein, the exemplary method and apparatus can utilize the accepter block which can contain an already embedded piece of donor tissue. Instead of using a plain paraffin block without any tissue inside (e.g., prior art accepter blocks), the exemplary method and apparatus can utilize accepter tissue, which can serve as a scaffolding for the micro-tissue punches to surround and support the donor tissue. The accepter tissue can also act as a test tissue, and can include tissue obtained from the liver, spleen or similar homogeneous tissues, although other tissue types can be used. Additionally, mediums other than tissue can be used as an accepter medium including biological and non-biological mediums (e.g., gels containing organic matter such as collagen, and/or a mixture of organic matter and artificial material such as polymers and/or plastics).
[0037]
[0038] As shown in
[0039]
[0040] While conventional tissue blocks can only be slightly warmed, the exemplary tissue block can be heated until the paraffin is completely melted, and the accepter tissue containing the micro-punches can be brought in one level, which can be, for example, the bottom of the mold. This can ensure the proper placement of all punches in the level of the tissue. Furthermore, for example, for appropriate and smooth cutting, the complete melting and solidifying of the paraffin can be beneficial. With the conventional method, cutting of tissue arrays can often be tedious and difficult. This can be because the small paraffin cylinders are placed into paraffin, and are only held in place by physical forces. This can cause problems during the sectioning process, as single punches can shift or be lost during the sectioning process. If the conventional plain paraffin tissue array block is heated, the donor micro punches (e.g., several hundred) can be in disarray and can tip over. By using an accepter tissue that can structurally hold the inserted micro-punches in place, the exemplary tissue array, according to an exemplary embodiment of the present disclosure, can be treated like a standard paraffin block without tissue, and can be heated so that the paraffin can be melted. Thus, fully melted paraffin can then be brought down in temperature, and can solidify to ensure the homogenous polymerization of all the paraffin within the exemplary tissue array block. This can make the sectioning process easier. Consequently, a higher yield of tissue sections can be gained by the exemplary method.
[0041] The exemplary method can also be used to produce one or more TMAs. Generally, the TMA can include hundreds of small tissue samples (e.g., 200-300 samples, although not limited thereto). Some conventional TMAs (e.g., TMAs 3205, 3305 of
[0042] In contrast to conventional TMAs (e.g., TMAs 3205, 3305), the exemplary TMA 2805 (see, e.g.,
[0043] The sections of the exemplary tissue array can also be placed in a water bath without affecting the tissue samples embedded therein. For example, when a tissue array is sliced, the slice can be placed in a water bath. Tissue samples in the conventional tissue array can easily move or shift during this process. Once applied to a glass slide for histological analysis, the tissues can be or become missing and/or misaligned and deranged. (See e.g.,
[0044] An additional problem with the conventional TMAs can be that the inserted donor tissues can have different thicknesses. The use of the TMA can be limited by the thinnest inserted tissue. Once this tissue, or several tissues, with less thickness than the other tissues have reached the section level, the TMA can lack those tissues.
[0045] In contrast to the conventional TMAs, in the exemplary TMA, the tissue samples from a donor tissue, having only limited thickness left, can be punched several times, and stacked into a single punch hole of the accepter tissue of the exemplary TMA Thus, facilitating the use of thin donor tissues as several punches from the same thin donor tissue, which can now be placed on top of each other in a new TMA, rendering it sufficiently thick and creating a new TMA with a homogeneous thickness of all represented tissue. Therefore, the exemplary TMA, according to an exemplary embodiment of the present disclosure, can include several layers of donor tissue that can be placed on top of each other to increase the thickness of the donor tissue in the accepter block. This can facilitate a similar thickness of all donor tissue specimens. This can also increase the usability of the exemplary donor block since many more sections can be taken from the donor block while still displaying all the inserted donor tissues.
[0046] While the conventional tissue arrays and TMAs are manually arranged, the exemplary tissue array, according to the exemplary embodiments of the present disclosure, can be provided using, for example, an automated process, as the accepter tissue can provide a reference for the placement of the donor tissue. For example, after the accepter block has been created (e.g., using the exemplary procedure described above using a manual or automated process), the boundary of the accepter tissue and the donor tissue can be automatically determined, using, for example, an exemplary boundary determination procedure according to an exemplary embodiments of the present disclosure. When the boundary has been determined for the exemplary accepter tissue and the exemplary donor tissue, holes can be punched into to the accepter tissue using an exemplary hole punching procedure. Since an automated procedure can be more accurate, more samples can be placed in an accepter tissue through the exemplary automated procedure.
[0047] After the holes have been punched in the accepter tissue using the exemplary automated procedure of an exemplary embodiment of the present disclosure, tissue samples can be removed from one or more donor tissues and placed into the accepter tissue. The exemplary tissue array can then be heated to place all of the tissue samples on a single level (e.g., by compressing the tissue). Thus, while the exemplary tissue arrays can be created and/or provided using, for example, a manual procedure, the exemplary tissue arrays can also be created using an automated procedure, facilitating a quicker and cheaper process for creating tissue arrays.
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[0050] As shown in
[0051] Further, the exemplary processing arrangement 3602 can be provided with or include an input/output arrangement 3614, which can include, for example a wired network, a wireless network, the internet, an intranet, a data collection probe, a sensor, etc. As shown in
[0052] The foregoing merely illustrates the principles of the disclosure. Various modifications and alterations to the described embodiments will be apparent to those skilled in the art in view of the teachings herein. It will thus be appreciated that those skilled in the art will be able to devise numerous systems, arrangements, and procedures which, although not explicitly shown or described herein, embody the principles of the disclosure and can be thus within the spirit and scope of the disclosure. Various different exemplary embodiments can be used together with one another, as well as interchangeably therewith, as should be understood by those having ordinary skill in the art. In addition, certain terms used in the present disclosure, including the specification, drawings and claims thereof, can be used synonymously in certain instances, including, but not limited to, e.g., data and information. It should be understood that, while these words, and/or other words that can be synonymous to one another, can be used synonymously herein, that there can be instances when such words can be intended to not be used synonymously. Further, to the extent that the prior art knowledge has not been explicitly incorporated by reference herein above, it is explicitly incorporated herein in its entirety. All publications referenced are incorporated herein by reference in their entireties.