NOVEL ANTIGEN FOR USE IN MALARIA

Abstract

The present invention provides polypeptides useful as antigens expressed at the pre-erythrocytic stage of the malaria parasite. The antigens can be utilized to induce an immune response and sterile protection against malaria in a mammal by administering the antigens in vaccine formulations or expressing the antigens in DNA or other recombinant protein expression systems delivered as a vaccine formulation.

Claims

1. An immunogenic composition for protecting a mammal against malaria, the immunogenic composition comprising a recombinant polypeptide, wherein the recombinant polypeptide comprises one of the amino acid sequence of SEQ ID NO. 3, SEQ ID NO. 6, and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with one of SEQ ID NO. 3 and SEQ ID NO. 6; a pharmaceutically acceptable carrier; and an adjuvant.

2. An immunogenic composition for protecting a mammal against malaria, the immunogenic composition comprising a combination of two or more recombinant polypeptides in a pharmaceutically acceptable carrier, wherein a first one of the two or more recombinant polypeptides comprises one of the amino acid sequence of SEQ ID NO. 3 and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with SEQ ID NO. 3; a pharmaceutically acceptable carrier; and an adjuvant.

3. The immunogenic composition of claim 2 wherein a second one of the two or more recombinant polypeptides comprises an amino acid sequence selected from the group consisting of SEQ ID NO. 6, SEQ ID NO. 7, SEQ ID NO. 8, SEQ ID NO. 9, and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with one of SEQ ID NO. 6, SEQ ID NO. 7, SEQ ID NO. 8, and SEQ ID NO. 9.

4. A method of inducing an immune response against malaria in a mammal, which method comprises administering to said mammal an immunologically effective amount of a composition comprising a polypeptide encoded by one of the amino acid sequence of SEQ ID NO. 3, SEQ ID NO 6, and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with one of SEQ ID NO. 3, and SEQ ID NO. 6.

5. The method of claim 4 wherein the mammal is a human.

6. The method of claim 4 wherein the method further comprises administering to a mammal one or more priming or boosting immunizations against malaria, wherein said priming and boosting immunizations comprise an immunologically effective amount of a recombinant polypeptide, wherein the recombinant polypeptide comprises one of the amino acid sequence of SEQ ID NO. 3, SEQ ID NO. 6 and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with one of SEQ ID NO. 3, and SEQ ID NO. 6.

7. A method of administering to a mammal an immunologically effective amount of the composition of claim 1 by introducing into the mammal a suitable expression vector for expressing the polypeptide, wherein the suitable expression vector is selected from the group consisting of a plasmid, replicating viral vector, and nonreplicating viral vector.

8. The method of claim 7 wherein the mammal is a human.

9. The immunogenic composition of claim 1 wherein the recombinant polypeptide is expressed by a suitable expression vector selected from the group consisting of a plasmid, replicating viral vector, and nonreplicating viral vector.

10. The immunogenic composition of claim 1 wherein the recombinant polypeptide is expressed by a suitable expression vector selected from the group consisting of a DNA plasmid, baculovirus, VSV, MVA, GC46, alphavirus replicon, adenovirus, poxvirus, adenoassociated virus, cytomegalovirus, canine distemper virus, yellow fever virus, retrovirus, RNA replicons, DNA replicons, alphavirus replicon particles, Venezuelan Equine Encephalitis virus, Semliki Forest Virus, and Sindbis Virus.

11. The method of claim 4 the composition is administered through a suitable expression vector expressing the recombinant polypeptide, wherein the suitable expression vector is selected from the group consisting of a DNA plasmid, baculovirus, VSV, MVA, GC46, SpyVLPs, alphavirus replicon, adenovirus, poxvirus, adenoassociated virus, cytomegalovirus, canine distemper virus, yellow fever virus, retrovirus, RNA replicons, DNA replicons, alphavirus replicon particles, Venezuelan Equine Encephalitis virus, Semliki Forest Virus, and Sindbis Virus.

12. An immunogenic composition for protecting a mammal against malaria, the immunogenic composition comprising an recombinant polypeptide, wherein the recombinant polypeptide comprises one of the amino acid sequence of SEQ ID NO. 3, SEQ ID NO. 6, and derivatives thereof, wherein said derivatives have at least 10 contiguous amino acids of and/or 85% identity with one of SEQ ID NO. 3 and SEQ ID NO. 6; wherein the immunogenic composition is a dry powder.

13. The immunogenic composition of claim 12 wherein the dry powder is suitable for administration to a mammal upon suspension or reconstitution in a pharmaceutically acceptable carrier.

Description

BRIEF DESCRIPTION OF DRAWINGS

[0023] FIG. 1 shows the protection results for a matrix experiment in which fourteen CD1 outbred mice per group were immunized in a prime-boost regimen with a combination of DNA and Human Adenovirus type 5 (Ad5) vectors that express PY03396, PY05693, PY06306, PY00232 and PyCelTOS. Positive control mice were immunized with DNA and Ad5 vectors that express PyCSP. Negative control mice were immunized with 4× relative amount of DNA and Ad5 vector that do not express P. yoelii antigen and naïve mice. Gray and black bars indicate antigen combination groups with and without PyCSP, respectively. Hatched and checkered bars represent PyCSP and naïve groups, respectively. The mice were challenged with 300 P. yoelii sporozoites and evaluated for parasitaemia by examining Giemsa-stained blood smears up to 14 days post challenge. Numbers at bottom denote number of sterile protected mice per total challenged mice in each group.

[0024] FIG. 2 shows a matrix deconvolution of the experiment evaluating PY06306 and other antigens shown illustrated in FIG. 1. Fourteen CD1 outbred mice per group were immunized in a prime-boost regimen comprising of DNA and Adenovirus type 5 (Ad5) vectors that express PY03396, PY05693, PY06306, PY03424 and PY03011. Positive control mice were immunized with DNA and Ad5 vectors that express PyCSP. Negative control mice were immunized with 4× relative amount of DNA and Ad5 vectors that do not express P. yoelii antigen. Gray and black bars indicate antigen combination groups with and without PyCSP, respectively. Hatched and checkered bars represent PyCSP and null-immunized mice, respectively. The mice were challenged with 300 P. yoelii sporozoites and evaluated for parasitaemia by examining Giemsa-stained blood smears up to 17 days post challenge. Numbers at bottom denote number of sterile protected mice per total challenged mice in each group.

[0025] FIG. 3 shows a Kaplan-Meier curve depicting the percentage of protected mice for the time to parasitemia after challenge. Data extracted and analyzed from matrix deconvolution experiment 2. Closed circles indicate CD1 mice immunized with PY06306 antigen alone, Symbols Xs, squares and triangles indicate PyCSP, 4× Null and Naïve mice, respectively. The mice were challenged with 300 P. yoelii sporozoites and evaluated for parasitaemia by examining Giemsa-stained blood smears up to 14 (PyCSP, 4× Null and Naïve) or 17 (PY06306) days post challenge.

[0026] FIG. 4 shows antibody responses for the matrix deconvolution experiment. Endpoint immunofluorescence assay (IFA) titers were measured on P. yoelii sporozoite and blood stage parasites. Sera collected one week after Adeno 5 boost was pooled per group of antigen combination and assayed for reactivity on air-dried parasites. Black and gray bars indicate sporozoite and blood stages reactivity, respectively. Positive control antibodies were NYS1 and NYLS3 monoclonal antibodies, respectively. Sera from 4× null and naïve animals were negative.

[0027] FIG. 5 shows antibody titers of protected and non-protected mice for the matrix deconvolution Experiment shown in FIG. 4. Endpoint Immunofluorescence (IFA) titers were measured against P. yoelii sporozoite for individual mice for six PY06306 (E140)-containing groups of mice. One group from matrix experiment 2 (Mx2); E140, E137, E057 combination (closed circles) and five groups from matrix deconvolution experiment 2 (MDx2); E140, E137, E057 combination (closed squares), E140 alone (closed diamonds), E140, E137 combination (closed stars), E140, E057 combination (closed triangles), and E140, E137, E057, PY3424 combination (closed asterisks). All protected mice are displayed by closed symbols and all non-protected by the X symbol. Mann-Whitney non-parametric test indicates statistical significance;**, p<0.005 and***, p=0.001.

[0028] FIG. 6 shows continued protection at 11 weeks for the deconvolution study shown in FIG. 2. Sterilely protected mice were rested for 11 weeks and then challenged with 200 P. yoelii sporozoites. Protection was measured by examining Giemsa-stained blood smears up to 17 days post challenge.

[0029] FIG. 7 shows the PY06306 (Py E140) antigen homology among Plasmodium spp, including Pf (human P. falciparum), Pv (human P. vivax), Pc (rodent P. chabaudi), Py (rodent P. yoelii), Pb (rodent P. berghei), Pk (primate P. knowlesi), Pr (primate P. rhodiani), and Pg (primate P. gaboni).

[0030] FIG. 8 shows the PY06306 (Pf E140) (PFA0205w or MAL1P1.31 or PF3D7_0104100) amino acid conservation among various Pf parasite strains. These parasites were collected from a variety of countries in different continents. The highest (99%) and the lowest (92%) homology are highlighted.

[0031] FIG. 9 shows the results of an in vivo T cell depletion experiment in mice. CD1 outbred mice were immunized with PY06306 DNA and boosted with Adeno 5 vaccines, CD4.sup.+, CD8.sup.+, CD4.sup.+/CD8.sup.+ T cells depleted (black bars) before and after challenge with 300 P. yoelii sporozoites. Rat Ig and no depletion groups were used as positive controls. Groups of null-immunized mice (gray bars) were also depleted the same way and used as negative controls. PyCSP (diagonal bar) and Naïve (stripe bar) were experimental positive and negative controls. Arrows indicate the type of depletion and the number of mice sterile protected out of the number immunized. Challenged mice were evaluated for parasitaemia by examining Giemsa-stained blood smears up to 19 days post challenge.

[0032] FIGS. 10A and 10B shows sera transfer studies in CD1 and BALB/c mice. In FIG. 10A, groups of 14 BALB/c mice were either immunized with DNA/Adeno virus 5 encoding PY06306 (solid black line) and PyCSP (solid gray line). Sera from immunized and non-challenged mice were collected and transferred 24 and 6 hours before challenge to naïve recipient mice; PY06306 (dotted black line) and PyCSP (dotted gray line). After challenge with 300 P. yoelii sporozoites, mice were monitored for parasitaemia for 17 days. In FIG. 10B, groups of 14 CD1 mice were either immunized with DNA/Adeno virus 5 encoding PY06306 (solid black line) and PyCSP (solid gray line). Sera from immunized and non-challenged mice were collected and transferred 24 and 6 hours before challenge to naïve recipient mice; PY06306 (dotted black line) and PyCSP (dotted gray line). After challenge with 100 P. yoelii sporozoites, mice were monitored for parasitaemia for 17 days. Percentage of sterilely protected mice for each group is shown in the legend box.

[0033] FIG. 11 shows PY06306 protection against a blood stage challenge. Fourteen CD1 mice per group were immunized with a dose of DNA and boosted with Adenovirus 5 expressing PY06306 (black bar), PY06306+PyFalstatin (gray bar), and PyFalstatin alone). Null-immunized and naïve were used as negative control groups of mice. PyFalstating is also known as PY03424. All mice were challenged with 10,000 infected P. yoelii-infected erythrocytes and parasitaemia monitored for 17 days after challenge by Giemsa-stained thin smears.

[0034] FIG. 12 shows protection with mammalian codon-optimized Adenovirus 5 in a chart comparing native (na) and codon-optimized (co) PY06306 and route of immunizations. CD1 mice (14 per group) were primed with a co E140 DNA and boosted with either native PY06306 Adeno 5 (black bars) or mammalian co PY06306 Adeno 5 (gray bars). Both Adeno 5 constructs were administered intramuscular (IM) in decreasing doses from 10̂10, 10̂9, 10′8, and 10̂7 PU. Two additional groups of mice were boosted with Ad5 administered either subcutaneously (SC) or intravenously (IV). Two additional mice groups were not primed with DNA vaccine and instead immunized with a single IM dose of either na or co PY06306 Ad5 two weeks before challenge. Null-immunized (stripe bar) and Naïve (checkered bar) mice are negative controls. All mice were challenge with 300 P. yoelii sporozoites, parasitaemia were monitored over 18 days by thin blood smears stained with Giemsa.

[0035] FIG. 13 shows that Pf E140 (PFA0205w or MAL1P1.31 or PF3D7_0104100) is immunogenic in mice. IFA titers induced by PFA0205w vaccines. Both CD1 and BALB/c mice were immunized with PFA0205w (PfE140) vaccines reagents: DNA vaccine in VR1020-DV plasmid, Adenovirus 5, and full length recombinant protein expressed by the wheat germ system as GST and 6×His fusions. Recombinant proteins were emulsified in Montanide ISA 720 adjuvant and immunized SC as 5 μg/dose Immunofluorescence (IFA) titers were measured against both P. falciparum sporozoites and a mixture of several of blood stages.

[0036] FIG. 14 shows that the P. falciparum E140 (PFA0205w) is naturally immunogenic in humans. T cell responses to PFA0205w (PfE140 or PF3D7_0104100) by P. falciparum radiation attenuated sporozoites (RAS)-immunized human subjects. PBMCs were stimulated with overlapping 15mer peptide PFA0205w pools A for 21 h with brefeldin A and stained for viability, phenotypic (CD14, CD19, CD3, CD4, and CD8), and intracellular functional markers (including IFN-γ and CD154). The background subtracted frequencies of CD4.sup.+ T cells producing IFN-γ and intracellular CD154 (A) and CD8.sup.+ T cells producing IFN-γ(B) are shown. Positive responses for PFA0205w pool A (filled symbols) in both experiments were identified as those exceeding two standard deviations from the average of the negative control (DMSO stimulated) samples.

[0037] FIG. 15 shows that PVX_081555 (PvE140) is relatively abundant in P. vivax sporozoites. 256 P. vivax sporozoite proteins sequenced using multi-dimensional-protein-identification-technology (MudPIT) were graphed based on their relative abundance defined by their quantitative value. The positions of P. vivax circumsporozoite protein and P. vivax E140 (PVX_081555) are indicated in the graph with a black arrow.

DETAILED DESCRIPTION

[0038] The inventor has determined that pre-erythrocytic proteins are critical in conferring protective immunity against malaria. Despite the relatively large number of malaria genes that have been identified, following sequencing of the malaria parasite genome, identification of vaccine candidates has been hampered, to a great extent, by the relatively complex life-cycle of malaria parasite. Furthermore, many genes of the malaria parasite are poorly defined, antigenically, as well as functionally.

[0039] Against this backdrop, the inventor decided to undertake high-throughput screening of antigens encoded by numerous genes in order to ascertain potential protective responses. The inventor developed a novel strategy for identifying and testing potential malaria antigens that overcame the difficulties experienced in the prior art. This novel approach included identifying certain traits that the inventor determined would be indicative of potential human vaccine candidates. The inventor then compiled a list of 146 P. yoelii orthologs of P. falciparum genes that were believed to possess these traits. The inventor then designed cloning primers, and conceived of a strategy for cloning the genes and screening by transfection ELISpot. The transfection ELISpot involved transfecting an A20 cell line with the VR1020 vaccine constructs, expressing the antigen, and using these transfected cells to present antigens in the ELISpot assay. This use of ELISpot was a novel strategy for screening antigens. Priority antigens were identified from a large panel of P. falciparum proteins. The priority antigens were evaluated based on a number of criteria judged by the inventor to be relevant to protection against malaria, One such criterion was selecting antigens that are expressed in the sporozoite and liver stages of the malaria parasite; i.e. pre-erythrocytic antigens. Certain antigens among those selected based on this criterion showed protective responses in mice that indicated that orthologs of those genes in humans would encode human antigens useful as potential vaccine formulations. One gene in particular, PY06306, later curated as PY17X_0210400, which is the subject of this disclosure, surprisingly showed dramatic and consistent protection responses indicating that gene as encoding an antigen for which orthologs would be useful as a leading vaccine formulation.

[0040] The sequence documented for the PY06306 gene, however, was only partial (479 aa) and originated from the early genome annotation. In order to perform the protection experiments disclosed herein with the full-length antigen (816 aa), the inventor needed to re-clone the gene. A similar situation occurred with the P. falciparum (human homolog), which also needed to be re-cloned from what was known in the art. The sequences disclosed in the listing provided herein, used in all of the examples, and reflected in all of the data examples conform to the inventor's corrected version of the gene, rather than what was previously believed in the art to be the relevant sequence.

[0041] The invention relates to DNA and amino acid sequences encoding recombinant Plasmodium falciparum and Plasmodium vivax proteins. Specifically, the invention relates to a highly protective pre-erythrocytic Plasmodium yoelii and its P. falciparum and P. vivax ortholog antigens for use in a malaria vaccine. The relevant sequences can be utilized to express the encoded proteins for use as subunit immunogenic antigens or can be incorporated into vectors suitable for in vivo expression in a host in order to induce an immunogenic response. The antigens can be utilized in combination or singly in immunogenic formulations.

[0042] In one embodiment, the immunogenic composition is a DNA-based vaccine. DNA was found to be a viable platform for delivering the immunogenic compositions of the present disclosure. A DNA-based vaccine can be delivered by recombinant viruses, such as Modified Vaccinia Ankara (MVA) attenuated poxvirus, Vesicular Stomatitis Virus (VSV), or GC46 (gorilla adenovirus) viruses. Other human Adenovirus alternatives like these can also be used, such as baculovirus.

[0043] In another embodiment, the composition comprises immunogenic proteins. In this embodiment, the proteins can be produced by first inserting the DNA encoding the proteins in suitable expression systems. These include, for example, Adenoviral based systems, a poxvirus based system, or a DNA plasmid system. The expressed and purified proteins can then be administered in one or multiple doses to a mammal, such as humans. In this embodiment, the purified proteins can be expressed individually or DNA encoding specific proteins can be recombinantly associated to form a single immunogenic composition. These immunogenic compositions can then be administered in one or multiple doses to induce an immunogenic response.

[0044] One embodiment of the invention relates to recombinant polypeptides expressed as full-length or fragments by heterologous expression systems. Examples of such systems are: Escherichia coli, yeast (Saccharomyces cerevisiae or Pichia pastoris), mammalian cells (HEK293 or CHO cells), baculovirus-infected insect cells, and Drosophila S2 stable cells. The recombinant proteins can be incorporated in immunogenic formulations in order to induce an immune response. In this embodiment, the polypeptides can be incorporated singly or in combination. The immunogenic compositions of the invention can also include adjuvants to improve or enhance the immune response elicited by the polypeptides. Suitable adjuvants include ALFQ, a non-toxic formulation comprising a monophosphoryl lipid A-containing liposome composition with saponin.

[0045] Adjuvants have traditionally been broadly classified into two major classes according to their component sources, physiochemical properties or mechanisms of action, namely: (i) immunostimulants such as TLR ligands, cytokines, saponins and bacterial exotoxins that directly act on the immune system to increase responses to antigens and (ii) vehicles such as mineral salts, emulsions, liposomes, virosomes and biodegradable polymer microspheres that present vaccine antigens and co-administered immununostimulants to the immune system in an optimal manner. In recent years it has become apparent that many of these vehicles also have a direct effect on the immune system and can be considered immuno stimulants.

[0046] Examples of acceptable adjuvants for inclusion with a malaria vaccine include Army Liposome Formulation (ALF) derivatives such as ALF, ALFA (plus aluminum), and ALFQ (plus QS21). Other options include a lipid A derivative and a saponin in a liposome formulation, such as QS21 and 3D-monophosphoryl lipid A (a non-toxic derivative of lipopolysaccharide), other immunostimulants that are similar in structure to LPS, MPL, or 3D-MPL, acylated monosaccharides, saponin derivatives (Quil-A, ISCOM, QS-21, AS02 and AS01), soluble triterpene glycosides, Toll-like receptor 4 (TLR4) agonists, montanides (ISA51, ISA720), immunostimulatory oligonucleotides, and imidazoquinolines. Adjuvants may be prepared in cholesterol-containing liposome carriers.

[0047] As used herein, the term “polypeptide” refers to a polymer of amino acids and does not refer to a specific length of the product. Proteins are included within the definition of polypeptides. The term “mer,” in conjunction with a number, such as 15-mer, refers to the length of a polypeptide in numbers of amino acids.

[0048] As used herein, the proteins may be prepared for inclusion of an effective amount of one or more polypeptides described herein into an immunogenic composition by first expressing the appropriate gene fragments by molecular methods, expression from plasmids or other expression systems such as viral systems and then isolated. A further aspect of the invention is the ability of the proteins to induce an humoral and/or T-cell immune response.

[0049] An embodiment of the invention is the incorporation of DNA encoding the polypeptides in vector expression systems, wherein the system permits expression of one or more polypeptides in mammalian host cells, such as in humans to induce an immune response. The expression systems can be DNA plasmids or viral systems. Methods for preparing and administering a DNA vaccine expressing Plasmodium proteins are well known in the art.

[0050] In another embodiment, derivatives of the proteins can be used in immunogenic compositions. In a variant of this embodiment, the immunogenic derivatives of the P. falciparum and P. vivax proteins include at least 10 contiguous amino acids of an amino acid sequence of a full length polypeptide comprising an amino acid sequence disclosed herein. Immunogenic derivatives of the polypeptides may be prepared by expression of the appropriate gene fragments or by other methods such as by peptide synthesis. Additionally, derivatives may be a fusion polypeptide containing additional sequence encoding one or more epitopes of the P. falciparum polypeptides disclosed herein. In these embodiments, the proteins can be directly incorporated in immunogenic formulations or expressed from DNA plasmids or viral expression systems.

[0051] In some embodiments, the P. falciparum and P. vivax polypeptides include immunogenic derivatives with more than 80% amino acid sequence identity to the sequences disclosed herein. In this context, the term “identity” refers to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues that are the same, when aligned for maximum correspondence. Where sequences differ in conservative substitutions, i.e., substitution of residues with identical properties, the percent sequence identity may be adjusted upwards to correct for the conservative nature of the substitution.

[0052] When the compositions are prepared for administration, they are preferably combined with a pharmaceutically acceptable carrier, diluent or excipient to form a pharmaceutical formulation, or unit dosage form. A “pharmaceutically acceptable carrier” is a carrier, diluent, excipient, and/or salt that is compatible with the other ingredients of the formulation, and not deleterious to the recipient thereof. The active ingredient for administration may be present as a dry powder or as granules; as a solution, a suspension or an emulsion. The composition exists as dry powder prior to reconstitution in a liquid carrier.

[0053] Pharmaceutical formulations containing the immunogenic compositions of the invention can be prepared by procedures known in the art using well known and readily available ingredients. The therapeutic agents of the invention can also be formulated as solutions appropriate for parenteral administration, for instance by intramuscular, subcutaneous or intravenous routes. The pharmaceutical formulations of the therapeutic agents of the invention can also take the form of an aqueous or anhydrous solution or dispersion, or alternatively the form of an emulsion or suspension.

[0054] Thus, the immunogenic composition may be formulated for parenteral administration (e.g., by injection, for example, bolus injection or continuous infusion) and may be presented in unit dose form in ampules, pre-filled syringes, small volume infusion containers or in multi-dose containers with an added preservative. The composition is suitable for injection intravenously, subcutaneously, or intramuscularly. The active ingredients may take such forms as suspensions, solutions, or emulsions in oily or aqueous vehicles, and may contain formulatory agents such as suspending, stabilizing, and/or dispersing agents. Alternatively, the active ingredients may be in powder form, obtained by aseptic isolation of sterile solid or by lyophilization from solution, for constitution with a suitable vehicle, e.g., sterile, pyrogen-free water, before use.

[0055] Additionally, the immunogenic composition may contain formulatory agents that do not occur naturally in the cellular environment in which the peptide is expressed. Such formulatory agents include any surfactants, diluents, solubilizers, emulsifiers, buffers, thickeners, preservatives, detergents, adjuvants, excipients, and antimicrobials that do not naturally occur in the cellular environment in which the peptide is expressed, but nonetheless serve to artificially enhance the bioavailability, effectiveness, delivery, storage, administration, absorption, stability, safety, or function of the peptide in the immunogenic composition before, after, or during administration to a mammal.

[0056] Alternately, the immunogenic composition may be provided as a dry powder. A dry powder composition may be prepared by freeze drying, spray drying, and freeze spray drying a solution or suspension containing the polypeptides described herein, and may further optionally include milling or lyophilization with milling. The dry powder may be suitable for direct administration to a patient, such as through inhalation or capsule ingestion, or may be suitable for suspension or reconstitution in a fluid carrier. Dry powder formulations may include physiologically acceptable carrier powders, such as excipients, dispersants, stabilizers, humectants, anti-caking agents, or other additives.

[0057] The immunogenic compositions of the present invention, both dry powder and fluid embodiments, may include, as optional ingredients, pharmaceutically acceptable carriers, diluents, solubilizing, or emulsifying agents, and salts of the type that are well-known in the art. Specific non-limiting examples of the carriers and/or diluents that are useful in formulations of the present composition include water and physiologically acceptable buffered saline solutions, such as phosphate buffered saline solutions pH 7.0-8.0. The composition of the present disclosure may also comprise combinations of other agents such as diluents, which may include water, saline, glycerol or other suitable alcohols, wetting or emulsifying agents; buffering agents; thickening agents for example cellulose or cellulose derivatives; preservatives; detergents; antimicrobial agents; and the like.

[0058] Where the immunogenic composition is used as a vaccine, the composition comprises an immunologically effective amount of the peptides described herein. An “immunologically effective amount” of an antigen is an amount that when administered to an individual, either in a single dose or in a series of doses, is effective for treatment or prevention of malaria infection. This amount will vary depending upon the health and physical condition of the individual to be treated and on the antigen. Determination of an effective amount of an immunogenic or vaccine composition for administration to an organism is well within the capabilities of those skilled in the art.

[0059] A composition according to the invention may be for oral, systemic, parenteral, topical, mucosal, intramuscular, intravenous, intraperitoneal, intradermal, subcutaneous, intranasal, intravaginal, intrarectal, transdermal, sublingual, inhalation or aerosol administration. The composition may be arranged to be administered as a single dose or as part of a multiple dose schedule. Multiple doses may be administered as a primary immunization followed by one or more booster immunizations. The primary immunization may include a single formulation such as a virus (GC46) or DNA vaccine, followed by one or more booster immunizations with single or multiple formulations such as another virus (such as MVA) or recombinant protein. Suitable timings between priming and boosting immunizations can be routinely determined. A composition according to the present disclosure may be used in isolation, or it may be combined with one or more other immunogenic or vaccine compositions, and/or with one or more other therapeutic regimes.

[0060] The present disclosure thus provides a method of protecting a human or non-human mammal from the effects of malarial infection comprising administering to the human or non-human mammal a composition described herein. The composition may be a vaccine. The disclosure further provides a method for raising an immune response in a human or non-human mammal comprising administering a pharmaceutical composition described herein to the human or non-human mammal. The immune response is preferably protective. The method may raise a booster response in a patient that has already been primed. The immune response may be prophylactic or therapeutic.

Examples

Example 1: Identification of E140

[0061] A novel, highly protective pre-erythrocytic (PE) Plasmodium yoelii (Py) antigen, human orthologs for which are identified for use in a human malaria vaccine. This antigen is identified as PlasmoDB ID 10: PY06306, or PY17X_0210400, PYYM_0211900 or ID: 2121.m00052, depending on the nomenclature used. The antigen is also referred to as E140 or Py E140 in laboratory testing disclosed herein as a shorthand. The novel antigen is highly expressed in the sporozoite, liver, and blood stages of the parasite, and induces CD8.sup.+ T cell responses in mice immunized with the P. yoelii radiation-attenuated sporozoites (RAS). It generates strong antibody and cellular responses upon antigen-specific vaccine immunizations and sterilely protects between 71%-100% alone and in combination with other antigens of mice from an infectious P. yoelii sporozoite and blood stage challenges. First, P. yoelii pre-erythrocytic antigens were screened for their reactivity to T cells from RAS-immunized mice as a platform for identifying antigens for vaccine development. This process involved identifying, cloning, generating DNA plasmid (VR1020), screening, and evaluating Py antigens for ability to protect mice. It is well recognized that mouse models are a predictor for success with human orthologs. The gene encoding the PY06306 antigen was identified as a pre-erythrocytic target for vaccine development, and the partial gene was cloned. Experiments then determined that the protein could recall cytokine (IFN-γ) responses from splenocytes generated in mice immunized with the P. yoelii RAS. This data provided strong evidence that the PY06306 antigen was involved in the RAS immune response and protection, therefore demonstrating pre-erythrocytic vaccine value in humans.

Example 2: Confirming E140 Protection

[0062] Two vaccine reagents were made expressing the PY06306 antigen for protection studies in mice. These reagents were generated with the full-length gene: DNA vaccine in the VR1020 plasmid (PY06306-E140) and adenovirus serotype 5 (AdE1(t.PY06306)E3(10X)E4(TIS1)). The evidence for vaccine potential of the PY06306 antigen is shown in two separate animal matrix studies, intended to assess the ability of the antigen to induce an immune response capable of sterilely protecting mice from an infectious Py sporozoite challenge. The sterile protection was measured by the absence of parasites in the blood of mice examined up to 14 or 17 days post sporozoite challenge. Outbred CD1 mice were immunized with a regimen consisting of a prime with DNA vaccine (100 μg, IM) and a boost with adenovirus serotype 5 constructs (10.sup.10 PU, IM) 6 weeks later. A 3-antigen combination strategy (named matrix) was adopted to test the PY06306 antigen plus other new Py pre-erythrocytic antigens with and without P. yoelii circumsporozoite protein (PyCSP).

[0063] The first matrix animal study shown in FIG. 1 revealed two PY06306-containing antigen combinations (groups) yielding significant protection. The first combination induced 64% and 86% sterile protection alone and with PyCSP, respectively. The antigen components of this first combination were E140 (PY06306), E137 (PY05693) and E057 (PY03396). The 86% protection of the 3-antigen mixture combined with PyCSP was twice as high as the PyCSP alone group (43%), indicating a significant enhancement in the efficacy of this gold standard vaccine. The second 3-antigen combination produced 14% and 71% sterile protection alone and with PyCSP, respectively. This second combination consisted of E140 (PY06306) combined with two additional antigens with vaccine potential: Py325 (PY00232) and PyCelTOS (PY17X_1434600). Any or all of these five antigens (PY06306, PY05693, PY03396, PY325, and PyCelTOS) contributes to the protection shown in the corresponding figure; however, PY06306 was the only antigen common to all three antigen combinations, thus requiring a second experiment for the deconvolution of these antigen combinations.

Example 3: Sporozoite Challenge

[0064] A second study (Matrix Deconvolution Experiment 2) was designed to evaluate several antigen combinations having the PY06306 as the common denominator antigen. The experimental format and immunizations followed the same regimen as described for the first matrix experiment. FIGS. 1 and 2 show the markedly high efficacy for all antigen combinations that include the PY06306 (E140) antigen, ranging from 71% to 100% of the mice protected. Overall, 89% (137/154) of PY06306-immunized mice were protected from malaria infection. The PY06306 vaccine alone yielded 71% protection, significantly higher compared to 36% for the PyCSP alone group. Furthermore, there was a substantial delay in the onset of parasitaemia of non-protected mice as shown in FIG. 3. Detailed analysis of blood smears data from the PY06306-immunized group shows that three of the four non-protected mice became malaria positive on days 7, 10 and 12 after sporozoite challenge. This is significant when compared to the parasitaemia onset of the PyCSP, 4× Null, and Naive groups, in which all nonprotected mice became malaria positive by day 5 post sporozoite challenge.

Example 4: Antibody Titers

[0065] The PY06306 antigen induces high antibody titers to P. yoelii sporozoite stages and low antibody levels to blood stages depending on the individual mouse. This evidence is shown in FIG. 4 (PY06306 group) listing immune fluorescence (IFA) antibody titers to both sporozoite and blood stage parasites measured in pooled sera from mice in the Matrix Deconvolution Experiment 2. In summary, anti-sporozoite antibodies were detected in all groups immunized with PY06306, including combinations, which supports the immunogenicity of PY06306 antigen. Titers range from 1:5,120 to 1:20,480. Antibodies induced by the P. yoelii PY06306 immunization cross-reacts to P. berghei sporozoites. The detection of high antibody titers (1:5,120) in mice immunized with PY06306 alone demonstrates that the PY06306 antigen induces antibodies to sporozoites.

[0066] Two important observations based on a review of the data are: (i) the absence of protection (0%) and the lack of antibody response for the group of antigens without PY06306 (PY03396 and PY05693) in FIG. 2. This confirms that the PY06306 is the main, if not the only component of these combinations inducing protection. The other (ii) is the anti-sporozoite antibody response induced specifically by the PY06306 antigen. The comparison of the anti-sporozoite IFA titers for the protected versus non-protected mice strongly indicates that the antibodies detected in these mice correlate with the protection outcome. All protection studies were performed under animal protocols D02-09 and 14-IDD-13. The results of the protection studies validate the role of PY06306 orthologs as valuable components for a malaria vaccine.

Example 5: Spleen and Liver Analysis

[0067] Further studies confirmed that in spleen, >10% CD8+ T cells expressing IFNγ and lower (<0.6%) CD4+ T cells in PY06306-immunized mice. A range of 5% to 16.2% in liver was observed. High efficacy of protection continued 11 weeks after a second sporozoite challenge. The T cell depletion indicates that high levels of E140-specific T cells are not required for protection in mice. Additionally, PY06306 immunization induces high levels of CD8+ T cells expressing IFNγ in the spleen liver. Anti-PY06306 sera transfer to both CD1 and BALB/c mice significantly delayed the onset of parasitemia. E140-sera recipient mice also had significantly lower IFA titers compared to protected mice immunized with PY06306. PY06306 sera collected prior to sporozoite challenge reacts to sporozoites only. However, after challenge some protected mice developed antibodies positive to blood stage by IFA.

[0068] PY06306 sterilely protects up to 100% of CD1 and BALB/c mice from a blood stage challenge (FIG. 11) Immunization with PY06306 prevents blood infection and delays onset of detectable parasitemia in 88% (30/34) of non-protected mice. Additionally, transfer of anti-PY06306 antibodies to naïve mice significantly delays infection. High levels of CD8+ T cells expressing IFNγ in are found in spleens and livers of PY06306-immunized mice. Depletion did not reduce sterile protection. PY06306-specific IFA antibody titers correlate with protection.

Example 6: In Vivo T Cell Depletion

[0069] FIG. 9 shows the results of a study on in vivo t-cell depletion. Several groups of outbred CD1 mice were immunized. T cell depletions were performed by injection of T cell-specific monoclonal antibodies following standard protocols. Mice were then challenged with 300 P. yoelii sporozoites and protection assessed by the absence of parasites in thin blood smears up to 19 days after challenge. All PY06306-immunized mice that had their T cells depleted were protected, confirming that both CD4+ and CD8+ T cells are not required for the PY06306 protection. One non-protected mouse from the CD4/CD8 group had malaria detected in the blood 13 days post sporozoite challenge while all other mice had positive smears on day 5. A total of 68 protected mice out 70 were immunized, a 97% overall efficacy. This study confirmed the surprising mechanism that protection induced by a pre-erythrocytic antigen against a sporozoite challenge does not rely on T cells.

Example 7: Sera Transfer Studies

[0070] FIGS. 10A and 10B shows sera transfer studies in CD1 and BALB/c mice. This study confirmed the role of antibodies in the protection induced by PY06306 (E140). The study design followed standard sera transfer protocols, where sera from PY06306-immunized CD1 and BALB/c mice were harvested, transferred to naïve animals (1:1 ratio), and then challenged with P. yoelii sporozoites. Sera transfers took place over 2 days; 24 hours and 6 hours before the sporozoite challenge. The protection results are shown in FIG. 10A for CD1 mice and FIG. 10B for BALB/c mice. FIGS. 10A and 10B show that no sterile protection was transferred with sera (7% (1 out 14) of CD1 and 0% (0 out 14) of BALB/c) from mice immunized with PY06306 vaccine. There was a statistically significant delay in the onset of parasitemia on all non-protected mice from the PY06306 sera recipient (dotted line) as compared to any other group in the same study (Mantel-Cox ***, p=0.0001). This confirms that the anti-PY06306 antibodies have an effective impact on the parasite development in the blood play a role in the protection. Significantly lower antibody titers in the recipient CD1 (1:2,560) and BALB/c (1:575) mice and compared to the donor CD1 (1:7,994) and BALB/c (1:18:549) mice explain why these mice were not protected from the challenge.

Example 8: Detection of PY06306-Specific CD8 T Cells in Spleen and Liver

[0071] PY06306-specific CD8 T cells are found in the spleens and livers of PY06306-immunized and naïve mice. Due to the fact that PY06306 is a large molecule, 15mer overlapping peptides were divided into two pools spanning the entire protein; Pool A containing peptides from the N-terminal and Pool B from the C-terminal of PY06306. T cells were measured by flow cytometry gated for CD8+ cells expressing Interferon gamma (IFNγ) and expressed as a percentage of the total T cell population. The data shows that only peptides from Pool A were able to recall IFNγ CD8 cells confirming that PY06306 T cell epitopes are likely restricted to the N-terminal of the antigen. Very high levels of CD8+ T cells expressing IFNγ, were detected for both spleens (average 18%) and livers (average 11%) of PY06306-immunized mice. For intracellular cytokine staining, splenocytes and liver-resident T cells were prepared from PY06306- and Null-immunized mice using standard protocols, followed by stimulation for six hours with a final concentration of 2 μg/ml of PY06306 (E140) peptide pools A and B. Data were acquired using a LSRII flow cytometer (BD Biosciences) and analyzed using FlowJo (Tree Star Inc.).

Example 9: PY06306 Induces Protection in BALB/c Mice

[0072] PY06306 antigen effectively protects BAB/c strains of mice against a sporozoite challenge. Fourteen BALB/c mice per group were immunized with a dose of DNA and boosted with Adenovirus 5 encoding PY06306, PY06306+PyCSP, and PyCSP. Null-immunized and naïve were used as negative control groups of mice. All mice were challenged with 100 infectious P. yoelii sporozoites and parasitaemia monitored for 17 days after challenge by Giemsa-stained thin smears. Upon challenge all (100%) PY06306-immunized mice were sterilely protected (PY06306 and PY06306+PyCSP) whereas 57% of PyCSP were protected. Thus PY06306 can protect an inbred strain of mice, and mixing with PyCSP antigen does not inhibit the PY06306 protection.

Example 10: PY06306 Induces Protection Against a Blood Stage Challenge

[0073] FIG. 11 shows PY06306 protection against a blood stage challenge. PY06306 antigen alone and in combination with PyFalstatin protects mice against a stringent challenge with 10,000 blood stage parasites. In this study, mice immunized with PY06306 alone and in combination with PyFalstatin and challenged with P. yoelii-infected erythrocytes. Both groups of mice were 100% sterilely protected (black and gray bars). PyFalstatin antigen is also known as PY03424. The protection against a blood stage challenge provides a second level of defense induced by the PY06306 vaccine, a valuable feature for a malaria vaccine.

Example 11: Protection with Lower and Single Dose of Codon-Optimized PY06306 Ad5

[0074] FIG. 12 shows protection with codon-optimized Adenovirus 5. This study evaluated an Adenovirus 5 construct made with codon-optimized (co) PY06306 gene designed for expression in mammalian cells. The change in the PY06306 native codon sequence did not alter the amino acid sequence expressed by the Ad5 virus, A study examined and compared the in vitro expression of the PY06306 protein expressed by the native (na) and codon-optimized (co) Adenovirus 5 constructs. After probing with mouse polyclonal sera, the coPY06306 Ad5 expresses much higher levels of PY06306 protein compared to the native construct. In the first groups of mice, the boosting dose was titrated for both native (na) and codon-optimized PY06306 Ad5 ranging from 10̂10, 10̂9, 10̂8 and 10̂7 PU per dose. All mice in these eight groups were primed with the same coPY06306 DNA vaccine dose (100 μg) and boosted with varying doses of either naPY06306 (black bars) or coPY06306 (gray bars) Ad5 construct intramuscular (IM). The overall efficacy indicates that the co PY06306 Ad5 vaccine induces higher protection in CD1 mice (100%, 100%, 86% and 93%) compared to the na PY06306 had lower protection (86%, 93%, 86% and 71%) for the same Ad5 doses. The study also compared subcutaneous (SC) and intravenous (IV) routes for Ad5 administration. SC route yielded similar protection levels for both na and co PY06306 vaccine (50 and 57% respectively). The IV route for the co PY06306 Ad5 resulted in 100% sterile protection, while the na provided 79%. The IV route for na PY06306 Ad5 yielded 79% sterile protection, while subcutaneous yielded 50% protection. Mice groups immunized with a single dose of coPY06306 Ad5 induced 93% sterile protection compared to 29% for the naPY06306 vaccine. These mice received no DNA vaccine priming. All protection studies were performed under animal protocols D02-09 and 14-IDD-13.

Example 12: Human P. falciparum is Immunogenic in Mice

[0075] FIG. 13 shows that P. falciparum PFA0205w (E140 ortholog) is immunogenic in mice. Four vaccine reagents were generated for PFA0205w (aka PF3D7_0104100), these are: VR1020 DNA vaccine construct, human Adenovirus 5 construct, protein expression plasmids pEU-E01-GST, and pEU-E01-His. DNA vaccine and Ad5 were produced in large scale for mice immunizations. Recombinant proteins were produced in small-scale by the wheat germ cell-free system at NMRC. Both CD1 and BALB/c mice were immunized using a variety of prime-boost regimens as shown in FIG. 13. The Ad5 prime and recombinant protein boost was the most immunogenic regimen, inducing IFA titers up to 1:4,000 to both P. falciparum blood and sporozoite stage parasites. A single dose of PFA0205w Adeovirus 5 induce antibodies to parasites. This confirms that PFA0205w as a single dose of recombinant virus (Adenovirus 5) or as a prime-boost with an Ad5-protein regimen are viable as vaccine formulations.

Example 13: P. falciparum E140 (PFA0205w) is Immunogenic in Humans

[0076] FIG. 14 shows that the P. falciparum E140 (PFA0205w) is immunogenic in humans. T cells from individual subjects immunized with radiation-attenuated sporozoites (RAS) were able to respond to stimulation with PFA0205w peptide pool (A). The peptide mixture contained 15mer overlapping peptides covering most of the N-terminus region of PFA0205w protein. Since the protein is large, the peptides were divided into two pools; pool A covering the N-terminus and pool B for the C-terminus of the PFA0205w protein. The data in both graphs indicated that the imuunizations with the attenuated sporozoite vaccine induce both CD4 and CD8 T cells in humans. CD4+ and CD8+ T cells play a role in the PFA0205w-induced protection against pre-erythrocytic parasites. There are high levels of P. yoelii E140 responses in the spleen and livers of E140-immunized mice.

Example 14: PFA0205w is Expressed in Schizonts and Localized in the Surface and Cytosol of Sporozoites

[0077] The PFA0205w antigen is expressed at both the sporozoite and schizont stages of P. falciparum. The IFA reactivity was obtained using CD1 mice serum generated by priming with PFA0205w Adenovirus 5 and boosting with recombinant PFA0205w protein. The serum was positive for 36-hour P. falciparum erythrocytic schizonts and negative for early rings and trophozoites. The subcellular localization of PFA0205w antigen in sporozoites was determined by immuno electron microscopy (EM). The analysis of micrographs showed that PFA0205w antigen is localized in both at the surface and in the cytosol of P. falciparum sporozoites. Immuno fluorescence and immuno electron microscopy showed reactivity of serum from CD1 mice immunized with PFA0205w Adeno 5 and boosted with recombinant PFA0205w protein. Air-dried IFA slides were made with NF54 P. falciparum parasites about 36 hours after invasion of red blood cell. IFA was performed with 1:500 serum dilution and developed with a FITC-labeled goat anti-mouse Ig. For immuno EM, P. falciparum sporozoites-containing salivary glands were isolated from infected mosquitoes. Fixed glands were embedded, sectioned, mounted on electron microscopy grids and stained using same serum and colloidal gold-labeled anti-mouse antibodies. Micrographs confirmed that the PFA0205w antigen is localized in both at the surface and in the cytosol of P. falciparum sporozoites.

Example 15: PVX_081555 (PvE140) is Expressed in P. vivax Sporozoites

[0078] FIG. 15 shows that PVX_081555 (PvE140) is expressed in P. vivax sporozoites. Anopheles dirus mosquitos were fed blood through a membrane feeder from patients infected with P. vivax malaria. Fourteen days after the membrane feeding the mosquito salivary glands were extracted from 100 mosquitos. The salivary glands were crushed in a microcentrifuge tube containing phosphate-buffered-saline with a pestle and to liberate Plasmodium vivax sporozoites. The salivary gland debris-sporozoite mixture was then centrifuged to remove the mosquito salivary gland debris and the P. vivax sporozoites were transferred from the supernatant to a new microcentrifuge tube. The extracted P. vivax sporozoites were counted and 1×106 sporozoites were digested with 1 ug of molecular biology grade trypsin at 37 degrees Celsius for 18 hours. After digestion the trypstic sporozoite peptides were desalted over a C8 reversed phase column and lyophilized. The lyophilized tryptic peptides were subjected to multi-dimensional-protein-identification technology (MudPIT) to identify P. vivax sporozoite proteins that might be vaccine candidates. Tandem mass spectra generated from P. vivax sporozoites were searched against a combined Anopheles-Plasmodium vivax protein sequence database using the Sequest algorithm. Output files from the Sequest search were loaded into the Scaffold protein viewer. Sequences matching the Anopheles proteome were subtracted using the Scaffold program to highlight proteins that specifically matched the P. vivax proteome. Scaffold software was used to compare the abundance of each of the P. vivax sporozoite proteins identified by MudPIT. Protein abundance was defined by the Scaffold “quantitative value” which normalizes the abundance of mass spectra matching a given protein to that protein's molecular weight. 256 high-confidence P. vivax proteins were identified in this MudPIT experiment. P. vivax E140 (PVX_081555) was the 39th most abundant P. vivax sporozoite protein and the 5th most abundant membrane-associated protein sequenced. In comparison, the CSP vaccine antigen, that is also associated with the parasite membrane, was the 5th most abundant protein overall and the most abundant membrane-associated protein in the sample. This result illustrates that P. vivax E140 is among the most abundant membrane-associated proteins in the parasite. E140's membrane association and abundance therefore make it an exceptional target of the humoral response.