Recombinant vaccinia virus and use thereof
11452770 · 2022-09-27
Assignee
Inventors
- Sujeong Kim (Seoul, KR)
- Minjung Kim (Seoul, KR)
- Heonsik Choi (Seoul, KR)
- Jaeil SHIN (Seoul, KR)
- Minju Kim (Seoul, KR)
- Hyesun Lee (Seoul, KR)
- Soondong LEE (Gwangmyeong-si, KR)
- Hwanjun Choi (Incheon, KR)
- Joonsung Kim (Gimpo-si, KR)
- Jieun Hong (Seoul, KR)
- Eunjin LEE (Seoul, KR)
Cpc classification
C12N7/00
CHEMISTRY; METALLURGY
C12N2710/24134
CHEMISTRY; METALLURGY
A61K35/768
HUMAN NECESSITIES
C12N2710/24121
CHEMISTRY; METALLURGY
C12N2710/24132
CHEMISTRY; METALLURGY
International classification
A61K35/768
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
A61K39/00
HUMAN NECESSITIES
Abstract
The present invention relates to a recombinant vaccinia virus in which the expression of some genes is inhibited, and a use thereof. The recombinant vaccinia virus of the present invention selectively kills cancer cells, and has an excellent reproducibility in cancer cells. Also, the virus has a lower toxicity to normal cells, and thus has an advantage of being safe for a human body. Therefore, the recombinant vaccinia virus of the present invention can be effectively used as a composition for treating cancer.
Claims
1. A method for treating a cancer in a subject in need thereof, comprising administering to the subject an effective amount of a recombinant vaccinia virus in which K3L gene, thymidine kinase (TK) gene, and vaccinia growth factor (VGF) gene are deleted or inactivated, wherein the recombinant vaccinia virus has an increased cancer cell killing activity in comparison to a recombinant vaccinia virus in which TK gene alone is deleted or inactivated, and the recombinant vaccinia virus has an increased cancer cell killing activity in comparison to a recombinant vaccinia virus in which VGF gene and TK gene are deleted or inactivated.
2. The method of claim 1, wherein the cancer is any one selected from the group consisting of lung cancer, colorectal cancer, prostate cancer, breast cancer, brain cancer, head and neck cancer, esophageal cancer, skin cancer, liver cancer, ovarian cancer, pancreatic cancer, and a combination thereof.
3. The method of claim 1, wherein the VGF gene is a polynucleotide consisting of the sequence of SEQ ID NO: 66.
4. The method of claim 1, wherein the TK gene is a polynucleotide consisting of the sequence of SEQ ID NO: 68.
5. The method of claim 1, wherein the K3L gene is a polynucleotide consisting of the sequence of SEQ ID NO: 70.
6. The method of claim 1, wherein the vaccinia virus is any one selected from the group consisting of Western Reserve (WR), New York Vaccinia Virus (NYVAC), Wyeth (The New York City Board of Health), LC16m8, Lister, Copenhagen, Tian Tan, USSR, TashKent, Evans, International Health Division-J (IHD-J), International Health Division-White (IHD-W), and a variant thereof.
7. The method of claim 6, wherein the vaccinia virus is IHD-W.
8. The method of claim 1, wherein the cancer is solid cancer or blood cancer.
9. The method of claim 8, wherein the solid cancer is any one selected from the group consisting of lung cancer, colorectal cancer, prostate cancer, thyroid cancer, breast cancer, brain cancer, head and neck cancer, esophageal cancer, skin cancer, thymic cancer, gastric cancer, colon cancer, liver cancer, ovarian cancer, uterine cancer, bladder cancer, rectal cancer, gallbladder cancer, biliary tract cancer, pancreatic cancer, and a combination thereof.
10. The method of claim 8, wherein the blood cancer is any one selected from the group consisting of lymphoma, acute leukemia, multiple myeloma, and a combination thereof.
11. The method of claim 1, wherein the expressions of the K3L gene, TK gene, and VGF gene are deleted or inactivated by partial or entire deletion of the genes, and/or insertion of a foreign gene into the genes.
Description
BRIEF DESCRIPTION OF DRAWINGS
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(5) TABLE-US-00001 TABLE 1-1 Carcinoma Cell line Lung cancer A549 Brain cancer U-87MG Breast cancer T-47D Ovarian cancer A2780 Pancreatic cancer MIA PaCa-2 Colorectal cancer SW620
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(7) TABLE-US-00002 TABLE 1-2 Carcinoma Cell line Liver cancer Hep3B Prostate cancer DU145 Head and neck cancer FaDu Fibrosarcoma HT-1080
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(9) TABLE-US-00003 TABLE 2 Abbreviation Meaning VTK All of VGF, TK, and K3L genes are deleted ViTK Expression of VGF gene is inactivated, and both TK and K3L genes are deleted VTiK Expression of TK gene is inactivated, and both VGF and K3L genes are deleted VTKi Expression of K3L gene is inactivated, and both VGF and TK genes are deleted
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DETAILED DESCRIPTION OF INVENTION
(15) Hereinafter, the present invention will be described in detail.
(16) In an aspect of the present invention, there is provided a recombinant vaccinia virus in which expression of VGF, TK, and K3L genes is suppressed.
(17) The term “VGF” as used herein means vaccinia growth factor. The vaccinia growth factor is an enzyme exhibiting a similar activity to epithelial growth factor. The vaccinia growth factor encoded by the VGF gene exhibits a growth factor activity in the case of being infected with the virus and can be synthesized at an initial stage of infection caused by the virus. The VGF may be a sequence of GenBank: AA089288.1, ABD52455.1, or AIX98927.1, but is not limited thereto. Specifically, the VGF may be a base sequence encoding an amino acid sequence represented by SEQ ID NO: 67, and the VGF gene may be a base sequence represented by SEQ ID NO: 66. The VGF or a gene thereof may have a homology of about 70% or 75% or more, and preferably about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, or 89% or more, to the amino acid sequence of SEQ ID NO: 67 or the base sequence of SEQ ID NO: 66. In addition, the VGF or a gene thereof may have a homology of about 90%, 91%, 92%, 93%, or 94% or more, preferably about 95%, 96%, 97%, 98%, or 99% or more, and most preferably about 99% or more, to the amino acid sequence of SEQ ID NO: 67 or the base sequence of SEQ ID NO: 66.
(18) The term “TK” as used herein means thymidine kinase. The thymidine kinase is an enzyme involved in the biosynthesis of nucleotides. The thymidine kinase encoded by the TK gene causes a phosphoric acid at a y position of ATP to bind to thymidine so that nucleotides constituting a viral DNA can be produced. The TK may be a sequence of GenBank: AAO89373.1, ABD52560.1, or AIX99011.1, but is not limited thereto. Specifically, the TK may be a base sequence encoding an amino acid sequence represented by SEQ ID NO: 69, and the TK gene may be a base sequence represented by SEQ ID NO: 68. The TK or a gene thereof may have a homology of about 70% or 75% or more, and preferably about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, or 89% or more, to the amino acid sequence of SEQ ID NO: 69 or the base sequence of SEQ ID NO: 68. In addition, the TK or a gene thereof may have a homology of about 90%, 91%, 92%, 93%, or 94% or more, preferably about 95%, 96%, 97%, 98%, or 99% or more, and most preferably about 99% or more, to the amino acid sequence of SEQ ID NO: 69 or the base sequence of SEQ ID NO: 68.
(19) The term “K3L” as used herein means K3L protein. The K3L protein encoded by the K3L gene is a protein having homology to translation initiation factor-2α (eIF-2α) and can suppress an action of protein kinase R (PKR) which is an interferon activator. The K3L may be a sequence of GenBank: AAO89313.1, ABD52483.1, or AGB75754.1, but is not limited thereto. Specifically, the K3L may have a base sequence encoding an amino acid sequence represented by SEQ ID NO: 71, and the K3L gene may be a base sequence represented by SEQ ID NO: 70. The K3L or a gene thereof may have a homology of about 70% or 75% or more, and preferably about 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, or 89% or more, to the amino acid sequence of SEQ ID NO: 71 or the base sequence of SEQ ID NO: 70. In addition, the K3L or a gene thereof may have a homology of about 90%, 91%, 92%, 93%, or 94% or more, preferably about 95%, 96%, 97%, 98%, or 99% or more, and most preferably about 99% or more, to the amino acid sequence of SEQ ID NO: 71 or the base sequence of SEQ ID NO: 70.
(20) Suppressed expression of a gene according to the present invention means that the gene is not expressed or only a part of the gene is expressed by partial or entire deletion of the gene or insertion of a foreign gene into the gene so that an activity of a protein encoded by the gene is not exhibited. A method for deleting the gene or inserting a foreign gene can be performed by a method well known in the art. For example, this can be performed by methods for inserting a foreign gene which is disclosed in Molecular Cloning, A Laboratory Manual, Second Edition, by J. Sambrook, E. F. Fritsch and T. Maniatis (2003), Cold Spring Harbor Laboratory Press, Virology Methods Manual, edited by Brian W J Mahy and Hillar O Kangro (1996) Academic Press and Expression of genes by Vaccinia virus vectors, and Current Protocols in Molecular Biology, published by John Wiley and Son (1998), Chapter 16. Specifically, in an embodiment of the present invention, a foreign gene was inserted using pGEM-T Easy (Promega, Cat No. A1360) or pGEM-T (Promega, Cat No. A3600) vector system.
(21) The vaccinia virus may be selected from the group consisting of Western Reserve (WR), New York Vaccinia Virus (NYVAC), Wyeth (The New York City Board of Health; NYCBOH), LC16m8, Lister, Copenhagen, Tian Tan, USSR, TashKent, Evans, International Health Division-J (IHD-J), International Health Division-White (IHD-W), and variants thereof, but is not limited thereto. Specifically, the vaccinia virus may be WR, Lister, or IHD-W vaccinia virus, and may have a sequence of GenBank: AY243312.1, DQ121394.1, or AIX98951.1. In an embodiment of the present invention, the vaccinia virus may be IHD-W.
(22) The term “V” or “virus V” as used herein means a recombinant vaccinia virus in which VGF which is a vaccinia growth factor gene is deleted, and the virus does not express VGF gene due to deletion of the VGF gene.
(23) In addition, the term “Vi” or “virus Vi” as used herein means a recombinant vaccinia virus in which expression of vaccinia growth factor is inactivated, and the virus does not express VGF gene. Expression of the vaccinia growth factor can be suppressed by inserting a foreign gene into the VGF gene.
(24) In addition, the term “T” or “virus T” as used herein means a recombinant vaccinia virus in which thymidine kinase (TK) gene is deleted, and the virus does not express the TK gene due to deletion of the TK gene.
(25) In addition, the term “Ti” or “virus Ti” as used herein means a recombinant vaccinia virus in which expression of thymidine kinase is inactivated, and the virus does not express TK gene. Expression of the thymidine kinase can be suppressed by inserting a foreign gene into the TK gene.
(26) In addition, the term “K” or “virus K” as used herein means a recombinant vaccinia virus in which K3L gene is deleted, and the virus does not express the K3L gene due to deletion of the K3L gene.
(27) In addition, the term “Ki” or “virus Ki” as used herein means a recombinant vaccinia virus in which expression of K3L gene is inactivated, and the virus does not express K3L. Expression of the K3L protein can be suppressed by inserting a foreign gene into the K3L gene.
(28) In addition, the term “VT” or “virus VT” as used herein means a recombinant vaccinia virus in which VGF and TK genes are deleted. In addition, the term “ViTi” or “virus ViTi” as used herein means a recombinant vaccinia virus in which expression of vaccinia growth factor and thymidine kinase are inactivated. Methods for inactivating expression of the vaccinia growth factor and thymidine kinase are as described above.
(29) In addition, the term “VTK” or “virus VTK” as used herein means a recombinant vaccinia virus in which VGF, TK, and K3L genes are deleted. In addition, the term “ViTiKi” or “virus ViTiKi” as used herein means a recombinant vaccinia virus in which expression of vaccinia growth factor, thymidine kinase, and K3L protein are inactivated. Methods for inactivating expression of the vaccinia growth factor, thymidine kinase, and K3L protein are as described above.
(30) In addition, the term “ViTK” or “virus ViTK” as used herein means a recombinant vaccinia virus in which expression of vaccinia growth factor is inactivated, and TK and K3L genes are deleted. In addition, the term “VTiK” or “virus VTiK” as used herein means a recombinant vaccinia virus in which expression of thymidine kinase is inactivated, and VGF and K3L genes are deleted. In addition, the term “VTKi” or “virus VTKi” as used herein means a recombinant vaccinia virus in which expression of K3L protein is inactivated, and VGF and TK genes are deleted.
(31) In addition, an aspect of the present invention provides a pharmaceutical composition for preventing or treating cancer which contains the recombinant vaccinia virus as an active ingredient.
(32) Here, the recombinant vaccinia virus may be one in which expression of VGF, TK, and K3L genes are suppressed, as described above. The VGF, TK, and K3L genes are as described above.
(33) As an example of the recombinant vaccinia virus, the following can be mentioned. Variants of WR vaccinia virus may be WR-VTK, WR-ViTiKi, WR-ViTK, WR-VTiK, or WR-VTKi. In addition, variants of NYVAC vaccinia virus may be NYVAC-VTK, NYVAC-ViTiKi, NYVAC-ViTK, NYVAC-VTiK, or NYVAC-VTKi. Furthermore, variants of Wyeth vaccinia virus may be Wyeth-VTK, Wyeth-ViTiKi, Wyeth-ViTK, Wyeth-VTiK, or Wyeth-VTKi. In addition, variants of LC16m8 vaccinia virus may be LC16m8-VTK, LC16m8-ViTiKi, LC16m8-ViTK, LC16m8-VTiK, or LC16m8-VTKi. Furthermore, variants of Lister vaccinia virus may be Lister-VTK, Lister-ViTiKi, Lister-ViTK, Lister-VTiK, or Lister-VTKi. In addition, variants of Copenhagen vaccinia virus may be Copenhagen-VTK, Copenhagen-ViTiKi, Copenhagen-ViTK, Copenhagen-VTiK, or Copenhagen-VTKi. Furthermore, variants of TianTan vaccinia virus may be TianTan-VTK, TianTan-ViTiKi, TianTan-ViTK, TianTan-VTiK, or TianTan-VTKi. In addition, variants of USSR vaccinia virus may be USSR-VTK, USSR-ViTiKi, USSR-ViTK, USSR-VTiK, or USSR-VTKi. Furthermore, variants of TashKent vaccinia virus may be TashKent-VTK, TashKent-ViTiKi, TashKent-ViTK, TashKent-VTiK, or TashKent-VTKi. In addition, variants of Evans vaccinia virus may be Evans-VTK, Evans-ViTiKi, Evans-ViTK, Evans-VTiK, or Evans-VTKi. Furthermore, variants of IHD-J vaccinia virus may be IHD-J-VTK, IHD-J-ViTiKi, IHD-J-ViTK, IHD-J-VTiK, or IHD-J-VTKi. Furthermore, variants of IHD-W vaccinia virus may be IHD-W-VTK, IHD-W-ViTiKi, IHD-W-VTiK, or IHD-W-VTKi.
(34) According to an embodiment, it was identified that the recombinant vaccinia virus in which VGF, TK, and K3L genes are deleted has a killing ability against various cancer cells (
(35) In addition, the recombinant IHD-W-VT and IHD-W-VTK vaccinia viruses and the recombinant WR-ViTi and WR-ViTiKi vaccinia viruses were administered to a tumor mouse model. As a result, it was identified that all of the viruses suppressed cancer growth (
(36) In addition, it was identified that a tumor mouse model to which the recombinant IHD-W-VTK or WR-ViTiKi vaccinia virus was administered exhibited lower weight loss and mortality rate than a tumor mouse model to which the recombinant IHD-W-VT or WR-ViTi vaccinia virus was administered (
(37) Accordingly, a pharmaceutical composition of the present invention for preventing or treating cancer which contains, as an active ingredient, a recombinant vaccinia virus in which expression of K3L, TK, and VGF genes is suppressed can be usefully used for preventing or treating cancer.
(38) The term “cancer” as used herein may be solid cancer or blood cancer. Here, the solid tumor may be selected from the group consisting of lung cancer, colorectal cancer, prostate cancer, thyroid cancer, breast cancer, brain cancer, head and neck cancer, fibrosarcoma, esophageal cancer, skin cancer, thymic cancer, gastric cancer, colon cancer, liver cancer, ovarian cancer, uterine cancer, bladder cancer, rectal cancer, gallbladder cancer, biliary tract cancer, pancreatic cancer, and combinations thereof. According to an embodiment of the present invention, cancer may be lung cancer, liver cancer, prostate cancer, head and neck cancer, fibrosarcoma, brain cancer, breast cancer, ovarian cancer, pancreatic cancer, or colorectal cancer. In addition, the blood cancer may be selected from the group consisting of lymphoma, acute leukemia, multiple myeloma, and combinations thereof.
(39) The pharmaceutical composition of the present invention may further contain one or more pharmaceutically acceptable additives selected from the group consisting of excipients, lubricants, wetting agents, sweeteners, fragrances, and preservatives.
(40) The composition of the present invention may be formulated according to a conventional method. The composition of the present invention can be formulated employing a method known in the art so as to provide rapid, sustained, or delayed the release of an active ingredient, in particular after being administered to a mammal. According to the formulation, the composition of the present invention can be appropriately administered to an individual. Such administration may be parenteral administration, and examples thereof can include intra-cancer tissue, intradermal, intramuscular, intraperitoneal, intravenous, intraarterial, subcutaneous, intranasal, epidural, and oral route. A form of preparation for parenteral administration may be an injectable preparation.
(41) In another aspect of the present invention, there is provided a method for preventing or treating cancer, comprising a step of administering the recombinant vaccinia virus to an individual.
(42) The individual may be a mammal, in particular, a human. The composition of the present invention can be appropriately administered by a person skilled in the art depending on the patient's age, sex, weight, the severity of disease symptom, and route of administration. The administration may be once a day or several times a day.
(43) A preferred dosage of the recombinant vaccinia virus of the present invention varies depending on condition and body weight of an individual, severity of disease, drug form, route of administration, and period, and can be appropriately selected by a person skilled in the art. Specifically, the dosage may be such that a patient receives virus particles, virus units having infectivity (TCID.sub.50), or plaque forming units (pfu) of 1×10.sup.5 to 1×10.sup.18, and preferably 1×10.sup.5, 2×10.sup.5, 5×10.sup.5, 1×10.sup.6, 2×10.sup.6, 5×10.sup.6, 1×10.sup.7, 2×10.sup.7, 5×10.sup.7, 1×10.sup.8, 2×10.sup.8, 5×10.sup.8, 1×10.sup.9, 2×10.sup.9, 5×10.sup.9, 1×10.sup.10, 5×10.sup.10, 1×10.sup.11, 5×10.sup.11, 1×10.sup.12, 1×10.sup.13, 1×10.sup.14, 1×10.sup.15, 1×10.sup.16, 1×10.sup.17 or more, in which various values and ranges therebetween can be included. In addition, a dosage of the virus may be 0.1 ml, 1 ml, 2 ml, 3 ml, 4 ml, 5 ml, 6 ml, 7 ml, 8 ml, 9 ml, 10 ml or more, and all values and ranges therebetween can be included.
(44) Hereinafter, the present invention will be described in detail with reference to the following examples. However, the following examples are intended to illustrate the present invention, and the present invention is not limited thereto.
(45) I. Production of Recombinant Vaccinia Virus
(46) The present inventors constructed recombinant vaccinia virus vectors in which thymidine kinase (TK), vaccinia growth factor (VGF), and K3L genes are deleted or expression thereof is inactivated. Using these vectors, recombinant vaccinia viruses in which expression of the above genes is suppressed were produced and comparison was made for properties thereof as anti-cancer substances.
Example 1
Production of Recombinant WR Vaccinia Virus
Example 1.1
Construction of Recombinant WR Vaccinia Virus Vector in which VGF, TK, and K3L Genes are Inactivated or Deleted
Example 1.1.1
Construction of Recombinant WR Vaccinia Virus Vector in which Expression of VGF Gene is Inactivated
(47) Genes that flank VGF gene on both sides in the genomic DNA of WR vaccinia virus (ATCC, Cat No. VR-1354) were amplified by PCR and inserted into pGEM-T Easy, respectively, to construct pGEM-T Easy-VGF-L(WR) and pGEM-T Easy-VGF-R(WR). Information on primers used for the amplification of homologous base sequences that flank the VGF gene on both sides is shown in Table 3.
(48) TABLE-US-00004 TABLE 3 Name Sequence (5′.fwdarw.3′) SEQ ID NO VGF-L forward CGCAGCTGTGTTATCGATTGATA SEQ ID NO: 1 (WR) GTGGTGTCCT VGF-L reverse CTGCAGCGCTAGCACCGCATAAT SEQ ID NO: 2 (WR) CTGATAGCTGGAATA VGF-R forward CGGGATCCGTTAATTAAACTCGA SEQ ID NO: 3 (WR) CGAACTAAACTACCTATAC VGF-R reverse CGATATCGGAAAATGTCTGTTAG SEQ ID NO: 4 (WR) TAAATAACCATC p11 promoter CGGCTAGCTCTAGAAGCGATGCT SEQ ID NO: 5 forward ACGCTAG p11 promoter CAAGCTTCGGTTGCCTCGAGGAA SEQ ID NO: 6 reverse TTCATTTATAGCATAGAA LacZ forward CGCTCGAGGGATCCCGTCGTTTT SEQ ID NO: 7 LacZ reverse ACAACGTCAAGCTTCTTAATTAA SEQ ID NO: 8 GGATCCCCCCTGCCCGGTTATTA TTATTTTTGACACCAGACCAACT
(49) LacZ, whose expression is regulated by the p11 promoter, was used as a marker for screening for a virus in which recombination had occurred at a position of the VGF gene. A p11 promoter site in the WR gDNA was amplified by PCR and LacZ gene in pAAV-LacZ (Stratagene, Cat No. 240071-52) was amplified by PCR. Then, the resultants were inserted into pGEM-T Easy and pGEM-T, respectively, to construct pGEM-T Easy-p11 and pGEM-T-LacZ, respectively. Information on primers used for the amplification of the p11 promoter and the LacZ is shown in Table 3.
(50) In order to construct a shuttle plasmid in which a function of the VGF gene is partially deleted, the pGEM-T Easy-VGF-L(WR) was treated with PvuII and PstI, and ligated with a vector obtained by treating pSP72 (Promega, Cat No. P2191) with PvuII and PstI, to construct pSP72-VGF-L(WR). In addition, the pGEM-T Easy-VGF-L-VGF-R(WR) was treated with EcoRV and BamHI, and ligated with a vector obtained by treating the pSP72-VGF-L(WR) as constructed above with EcoRV and BamHI, to secure pSP72-VGF-L-VGF-R(WR). In order to introduce a LacZ expression cassette, the PGEM-T Easy-p11 was treated with SalI and NheI, and ligated with a vector obtained by treating the pSP72-VGF-L-VGF-R(WR) with SalI and NheI, to construct pSP72-VGF-L-p11-VGF-R(WR). The constructed pSP72-VGF-L-p11-VGF-R(WR) was treated with EcoRI and PacI, and then the pGEM-T-LacZ as constructed above was cut with EcoRI and PacI. The resultants were ligated to complete pSP72-VGF-L-p11-LacZ-VGF-R(WR) (hereinafter referred to as “WR VGF(i) shuttle plasmid”) which is a VGF shuttle plasmid.
Example 1.1.2
Construction of Recombinant WR Vaccinia Virus Vector in which Expression of TK Gene is Inactivated
(51) In order to secure genes that flank TK gene on both sides in the genomic DNA of WR vaccinia virus, the gDNA of WR was amplified by PCR, and then the base sequence segments which flank the TK gene on the left and right sides, and are homologous to each other were inserted into pGEM-T Easy, to construct pGEM-T Easy-TK-L(WR) and pGEM-T Easy-TK-R(WR). Information for primers used for the amplification of the base sequences which are homologous to both sides of the TK gene is shown in Table 4.
(52) TABLE-US-00005 TABLE 4 Name Sequence (5′.fwdarw.3′) SEQ ID NO: TK-L AGGTCGACTTGCGATCAATA SEQ ID NO: 9 forward(WR) AATGGATCACAAC TK-L TTAGCTGCAGTATGCGGCCG SEQ ID NO: 10 reverse(WR) CAACAATGTCTGGAAAGAAC TGTCC TK-R CGGAATTCTGTGAGCGTATG SEQ ID NO: 11 forward(WR) GCAA TK-R TCGGGATCCTCAGTCTCATG SEQ ID NO: 12 reverse(WR) TTCTCACCGG p7.5 promoter AGGAAGCTTTCCAAACCCAC SEQ ID NO: 13 forward CCGCTTTTTAT p7.5 promoter GAATTCGCACTAGTTCCGAT SEQ ID NO: 14 reverse CGCCGTGCAATAAATTAGAA TATACCC EGFP forward CGCTCGAGATGGTGAGCAAG SEQ ID NO: 15 GGCGAGG EGFP reverse TGAGATCTTTACTTGTACAG SEQ ID NO: 16 CTCGTCCATG Gpt forward CGACTAGTACACAAGACAGG SEQ ID NO: 17 CTTGCGAG Gpt reverse CGGAATTCGGCCCACTCATA SEQ ID NO: 18 AATCCAGTT pSE/L promoter CGAGCTGCAGATAAAAATTA SEQ ID NO: 19 forward ATTAATTACCCGGGTACCAG GCCTAGATCTGTCGACTCGA GCTTATTTATATTCCAAAAA AAAAAAATAAAATTTCAATT TTTAAGCTTCGGGATCCGCA A pSE/L promoter TTGCGGATCCCGAAGCTTAA SEQ ID NO: 20 reverse AAATTGAAATTTTATTTTTT TTTTTTGGAATATAAATAAG CTCGAGTCGACAGATCTAGG CCTGGTACCCGGGTAATTAA TTAATTTTTATCTGCAGCTC G TF forward ATCGGCGGCCGCTTTTTATC SEQ ID NO: 21 TGCGCGGTTAACCGCCTTTT TATCCATCAGGTGATCTGTT TTTATTGTGGAGCTGCAGCG AT TF reverse ATCGCTGCAGCTCCACAATA SEQ ID NO: 22 AAAACAGATCACCTGATGGA TAAAAAGGCGGTTAACCGCG CAGATAAAAAGCGGCCGCCG AT
(53) EGFP, whose expression is regulated by pSE/L promoter, and Gpt whose expression is regulated by p7.5 promoter, were used as markers for screening for a virus in which recombination had occurred at a position of the TK gene. A p7.5 promoter site was amplified by PCR using the WR gDNA as a template, and EGFP gene in pEGFP-N3 (Clontech, Cat No. 6080-1) and Gpt gene in DH5α (Takara, Cat No. 9057) were also amplified by PCR. Then, the resultants were inserted into pGEM-T Easy, respectively, to construct pGEM-T Easy-p7.5, pGEM-T Easy-EGFP, and pGEM-T Easy-Gpt, respectively. In addition, pSE/L promoter and TF were constructed through primer annealing. Sequences of primers used in the experiments are shown in Table 4.
(54) The pGEM-T Easy-p7.5 and the annealed pSE/L promoter were treated with BamHI and PstI, respectively, and ligated to construct pGEM-T Easy-pSE/L-p7.5. The constructed pGEM-T Easy-pSE/L-p7.5 and pGEM-T Easy-EGFP were respectively treated with BglII and XhoI, and then ligated, to construct pGEM-T Easy-pSE/L-p7.5.
(55) In order to construct a shuttle plasmid in which a function of the TK gene is partially deleted, the pSP72 was treated with EcoRI and BamHI, and the pGEM-T Easy-TK-R(WR) was treated with EcoRI and BamHI. Then, the resultants were ligated to construct pSP72-TK-R(WR). The constructed pSP72-TK-R(WR) was treated with XhoI and PstI, and ligated with the pSEM-T Easy-TK-L obtained by being treated with SalI and PstI, to construct pSP72-TK-L-TK-R(WR). In order to introduce an EGFP expression cassette, the constructed pSP72-TK-L-TK-R(WR) and pGEM-T Easy-EGFP-pSE/L-p7.5 were respectively treated with EcoRI and PstI, and ligated to construct pSP72-TK-L-EGFP-pSE/L-p7.5-TK-R(WR).
(56) In addition, the constructed pSP72-TK-L-EGFP-pSE/L-p7.5-TK-R(WR) and the annealed TF oligomer were respectively treated with PstI and NotI, and ligated to construct pSP72-TK-L-TF-EGFP-pSE/L-p7.5-TK-R(WR). In order to introduce a Gpt expression cassette, the constructed pSP72-TK-L-TF-EGFP-pSE/L-p7.5-TK-R(WR) and pGEM-T Easy-Gpt were respectively treated with EcoRI and SpeI, and ligated to finally construct pSP72-TK-L-TF-EGFP-pSE/L-p7.5-Gpt-TK-R(WR) (hereinafter referred to as “WR TK(i) shuttle plasmid”) which is a TK shuttle plasmid.
Example 1.1.3
Construction of Recombinant WR Vaccinia Virus Vector in which K3L Gene is Deleted
(57) Genes that flank K3L gene on both sides in the genomic DNA of WR vaccinia virus were amplified by PCR. Here, information on primers used for the amplification of homologous base sequences that flank the K3L gene on both sides is shown in Table 5. The amplified genes were respectively inserted into pGEM-T, to construct pGEM-T-K3L-L(WR) and pGEM-T-K3L-R(WR).
(58) TABLE-US-00006 TABLE 5 Name Sequence (5′.fwdarw.3′) SEQ ID NO: K3L-L forward TCGGTCGACCATATGTTT SEQ ID NO: 23 (WR) AAACGACGCATTATCTG K3L-L reverse TCGAAGCTTTTTTTATAC SEQ ID NO: 24 (WR) CGAACATAAAAATAAGGT TAATTAT K3L-R forward TCGGATATCCTTGTTAAC SEQ ID NO: 25 (WR) GGGCTCGTAAATTGGG K3L-R reverse TCGGGATCCTGATAATAC SEQ ID NO: 26 (WR) ACATATTTATTTAGGAAG CG TF forward ATCGGCGGCCGCTTTTTA SEQ ID NO: 27 TCTGCGCGGTTAACCGCC TTTTTATCCATCAGGTGA TCTGTTTTTATTGTGGAG CTGCAGCGAT TF reverse ATCGCTGCAGCTCCACAA SEQ ID NO: 28 TAAAAACAGATCACCTGA TGGATAAAAAGGCGGTTA ACCGCGCAGATAAAAAGC GGCCGCCGAT p7.5 promoter AGGAAGCTTTCCAAACCC SEQ ID NO: 29 forward ACCCGCTTTTTAT p7.5 promoter CGTGGATCCCCGTGCAAT SEQ ID NO: 30 reverse AAATTAGAATATA
(59) In order to construct a shuttle plasmid in which the K3L gene was deleted, the TF primer shown in Table 5 was annealed, treated with EcoRI and EcoRV, and ligated with a vector obtained by treating the pSP72 with EcoRI and EcoRV, to construct pSP72-TF. In addition, pDsRed2 (Clontech, Cat No. 632404) was treated with EcoRI and BamHI, and ligated with a vector obtained by treating the pSP72-TF with EcoRI and BamHI, to construct pSP72-DsRed-TF. The pGEM-T-K3L-R(WR) as constructed above was treated with EcoRV and BamHI, and ligated with a vector obtained by treating the pSP72-DsRed-TF with EcoRV and BamHI, to construct pSP72-DsRed-TF-K3L-R(WR). Next, the pGEM-T-K3L-L(WR) as constructed above was treated with XhoI and HindIII, and ligated with a vector obtained by treating the pSP72-DsRed-TF-K3L-R(WR) with XhoI and HindIII, to construct pSP72-K3L-L-DsRed-TF-K3L-R(WR). Finally, the p7.5 promoter was amplified by PCR using the WR gDNA as a template and then inserted into pGEM-T Easy, to construct pGEM-T Easy-p7.5. Information on primers used in the PCR amplification is shown in Table 5. The pGEM-T Easy-p7.5 was treated with HindIII and BamHI, and ligated with a vector obtained by treating the pSP72-K3L-L-DsRed-TF-K3L-R(WR) with HindIII and BamHI, to construct pSP72-K3L-L-p7.5-DsRed-TF-K3L-R(WR) (hereinafter referred to as “WR K3L shuttle plasmid”).
Example 1.1.4
Construction of Recombinant WR Vaccinia Virus Vector in which Expression of K3L Gene is Inactivated
(60) A gene that flanks K3L gene on the left side and a part of the K3L gene in the genomic DNA of WR vaccinia virus were amplified by PCR. Here, the amplification was carried out with the start codon of the K3L gene being placed immediately after the K3L-L sequence, and primers used for the amplification of the homologous sequence on the left side of the K3L gene are shown in Table 6. Here, a K3L-L-K3Li(WR) fragment which was amplified and includes a part that excludes and follows the start codon of the K3L gene was obtained and then ligated with a pGEM-T Easy vector, to construct pGEM-T Easy-K3L-L-K3Li(WR).
(61) TABLE-US-00007 TABLE 6 Name Sequence (5′.fwdarw.3′) SEQ ID NO K3L-Li forward TGTACGTATATTTAGATGTT SEQ ID NO: 31 TTCAGCT K3L-Li reverse ATAAGCTTCTTGCATTTTGT SEQ ID NO: 32 TATTCGT K3L-Ri forward CGCAGATAAAAACATATCCT SEQ ID NO: 33 TGTTAAC K3L-Ri reverse GTTAACAAGGATATGTTTTT SEQ ID NO: 34 ATCTGCG
(62) The WR K3L shuttle plasmid and pGEM-T Easy-K3L-L-K3Li(WR) as constructed in Example 1.1.3 were treated with SnaBI and HindIII, and ligated to construct pSP72-K3L-L-K3Li-p7.5-DsRed-TF-K3L-R(WR). In order to introduce the start codon of K3L into the constructed pSP72-K3L-L-K3Li-p7.5-DsRed-TF-K3L-R(WR), a point mutation was performed using primers as shown in Table 6, so that pSP72-K3L-L-K3Li-p7.5-DsRed-TF-K3L.sub.ATG-K3L-R(WR) (hereinafter referred to as “WR K3L(i) shuttle plasmid”) was finally constructed.
Example 1.2
Production of Recombinant WR Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted or Inactivated
Example 1.2.1
Production of WR Vaccinia Virus in which K3L Gene is Deleted
(63) In order to secure a recombinant virus, HeLa (ATCC, Cat No. CCL-2) cells were prepared in a 6-well plate at a condition of 3×10.sup.5 cells/well and in a state of MEM medium containing 2% fetal bovine serum. Then, the HeLa cells were transfected with 2 μg of the WR K3L shuttle plasmid as constructed in Example 1.1.3 using jetPRIME (Polyplus, Cat No. 114-07) and simultaneously treated with 0.05 MOI of WR wild-type vaccinia virus. After 4 hours of incubation, the medium was replaced with MEM medium containing 5% fetal bovine serum, and then the cells were further incubated for 48 hours. Finally, the infected cells were collected with 500 μl of the medium, and then the cells were lysed by repeating freezing and thawing three times. The cell lysate was called a crude virus. The produced crude virus was used and subjected to plaque isolation 6 times so that purely isolated recombinant WR vaccinia virus K was secured.
Example 1.2.2
Production of Recombinant WR Vaccinia Virus in which Expression of VGF and TK Genes is Inactivated
(64) First, recombinant WR vaccinia virus Vi in which expression of VGF gene is inactivated was obtained in the same conditions and methods as in Example 1.2.1, except that WR VGF(i) shuttle plasmid was used. Thereafter, recombinant WR vaccinia virus ViTi in which expression of VGF and TK genes is inactivated was obtained in the same methods as above, except that WR TK(i) shuttle plasmid and recombinant WR vaccinia virus Vi were used.
Example 1.2.3
Production of Recombinant WR Vaccinia Virus in which Expression of VGF, TK, and K3L Genes is Inactivated
(65) First, recombinant WR vaccine virus ViTiKi in which expression of VGF, TK, and K3L genes is inactivated was obtained in the same conditions and methods as in Example 1.2.1, except that WR K3L(i) shuttle plasmid and recombinant WR vaccinia virus ViTi were used.
Example 2
Production of Recombinant IHD-W Vaccinia Virus
Example 2.1
Construction of Recombinant IHD-W Vaccinia Virus Vector in which VGF, TK, and K3L Genes are Deleted
Example 2.1.1
Construction of Recombinant IHD-W Vaccinia Virus Vector in which VGF Gene is Deleted
(66) Genes that flank VGF gene on both sides in the genomic DNA of IHD-W vaccinia virus (ATCC, Cat No. VR-1441) were amplified by PCR. Here, information on primers used for the amplification of homologous base sequences that flank the VGF gene on both sides is shown in Table 7. In such a manner, VGF-L(IHD-W) and VGF-R(IHD-W) fragments were obtained and then ligated with a pGEM-T Easy vector to construct pGEM-T Easy-VGF-L(IHD-W) or pGEM-T Easy-VGF-R(IHD-W).
(67) TABLE-US-00008 TABLE 7 SEQ ID Name Sequence (5′.fwdarw.3′) NO VGF-L forward CGAAAGCTTGTAAGATGTTT SEQ ID (IHD-W) AGAAAATGGATATTTC NO: 35 VGF-L reverse CTGGGATCCTAGGCTAGCGT SEQ ID (IHD-W) GTAAATAATATAAAAATAAC NO: 36 AATACAATATTG VGF-R forward CTGGAATTCGATTTAATTAA SEQ ID (IHD-W) TTTTTATAAATTTTTTTTAT NO: 37 GAGTATTTTTACAAAAAA VGF-R reverse TAGGGATCCCATCGATAGTA SEQ ID (IHD-W) CAATAACTTTTATGAAAT NO: 38
(68) The above pGEM-T Easy-VGF-R(IHD-W) was treated with EcoRI and BamHI, and Psp72 was treated with EcoRI and BglII. Then, the resultants were ligated to construct pSP72-VGF-R(IHD-W). The constructed pSP72-VGF-R(IHD-W) and pGEM-T Easy-VGF-L(IHD-W) were respectively treated with HindIII and BamHI, and ligated to construct pSP72-VGF-L-VGF-R(IHD-W).
(69) Next, in order to introduce the p11 promoter and the LacZ gene into the pSP72-VGF-L-VGF-R(IHD-W), the p11-LacZ expression cassette in the WR VGF shuttle plasmid of Example 1.1.1 and the pSP72-VGF-L-VGF-R(IHD-W) were treated with NheI and PacI, and ligated to construct pSP72-VGF-L-p11-LacZ-VGF-R(IHD-W) (hereinafter referred to as “IHD-W VGF shuttle plasmid”.
Example 2.1.2
Construction of Recombinant IHD-W Vaccinia Virus Vector in which TK Gene is Deleted
(70) In order to secure genes that flank TK gene on both sides in the genomic DNA of IHD-W vaccinia virus, PCR was performed, and as a result, TK-L(IHD-W) and TK-R(IHD-W) fragments were obtained. Here, primers used are shown in Table 8. The secured TK-R(IHD-W) fragment and the pSP72 vector were respectively treated with EcoRI and BglII, and ligated to construct pSP72-TK-R(IHD-W). In addition, the pSP72-TK-R(IHD-W) and the TK-L(IHD-W) fragment were respectively treated with PstI and BamHI, and ligated to construct pSP72-TK-L-TK-R(IHD-W).
(71) The constructed pSP72-TK-L-TK-R(IHD-W) vector and the WR TK shuttle plasmid as constructed in Example 1.1.2 were respectively treated with EcoRI and NotI, and ligated to finally construct pSP72-TK-L-TF-EGFP-pSE/L-p7.5-Gpt-TK-R(IHD-W) (hereinafter referred to as “IHD-W TK shuttle plasmid”).
(72) TABLE-US-00009 TABLE 8 Name Sequence (5′.fwdarw.3′) SEQ ID NO TK-L forward GATCTGCAGCCCTCTTCAAGAA SEQ ID NO: (IHD-W) CCCATTAG 39 TK-L reverse TAGGGATCCTAGGCGGCCGCAT SEQ ID NO: (IHD-W) GACAATAAAGAATTAATTATTG 40 TTCACTT TK-R forward CATGAATTCTATTATATTTTTT SEQ ID NO: (IHD-W) ATCTAAAAAACTAAAAATAAAC 41 AT TK-R reverse AGATCTATCGCTTTAGTAGTAG SEQ ID NO: (IHD-W) GAAATGTTTTATTG 42
Example 2.1.3
Construction of Recombinant IHD-W Vaccinia Virus Vector in which K3L Gene is Deleted
(73) Genes that flank K3L gene on both sides in the genomic DNA of IHD-W vaccinia virus were amplified by PCR and respectively inserted in pGEM-T Easy, to construct pGEM-T Easy-K3L-L(IHD-W) and pGEM-T Easy-K3L-R(IHD-W). Here, primers used are shown in Table 9.
(74) In order to construct a gene expression cassette inside the K3L shuttle plasmid, p′7.5-DsRed gene cassette was amplified by PCR using the WR K3L shuttle plasmid as constructed in Example 1.1.3 as a template, and then inserted into pGEM-T Easy to construct pGEM-T Easy-p7.5-DsRed. Sequences of primers used for the amplification of the p7.5 promoter and the DsRed gene are shown in Table 9.
(75) TABLE-US-00010 TABLE 9 Name Sequence (5′.fwdarw.3′) SEQ ID NO K3L-L forward TCGGTCGACCATATGTTT SEQ ID NO: 43 (IHD-W) AAACGACGCATTATCTG K3L-L reverse TCGAAGCTTTTTTTATAC SEQ ID NO: 44 (IHD-W) CGAACATAAAAATAAGGT TAATTAT K3L-R forward CGCAGATAAAAATCACTT SEQ ID NO: 45 (IHD-W) GTTAACGGGCTCGTAA K3L-R reverse AAGCGCTAACATGGATTA SEQ ID NO: 46 (IHD-W) GGAAGCGCTAACATGG p7.5-DsRed AGGAAGCTTTCCAAACCC SEQ ID NO: 47 forward ACCCGCTTTTTAT p7.5-DsRed CGGATATCTTTTTATCTG SEQ ID NO: 48 reverse CGCGGTTAAC
(76) The constructed pGEM-T Easy-p7.5-DsRed and pSP72 vectors were respectively treated with HindIII and EcoRV, and then ligated to complete pSP72-p7.5-DsRed. In addition, the constructed pSP72-p7.5-DsRed was treated with EcoRV and BglII, and the pGEM-T Easy-K3L-R(IHD-W) as constructed above was treated with EcoRV and BamHI. Then, the resultants were ligated to construct pSP72-p7.5-DsRed-K3L-R(IHD-W). The constructed pSP72-p7.5-DsRed-K3L-R(IHD-W) was treated with XhoI and HindIII, and the pGEM-T Easy-K3L-L(IHD-W) was treated with SalI and HindIII. Then, the resultants were ligated to finally construct pSP72-K3L-L-p7.5-DsRed-K3L-R(IHD-W) (hereinafter referred to as “IHD-W K3L shuttle plasmid”).
Example 2.1.4
Construction of Recombinant IHD-W Vaccinia Virus Vector in which Expression of VGF Gene was Inactivated
(77) Genes that flank VGF gene on both sides and the VGF gene in the genomic DNA of IHD-W vaccinia virus were amplified by PCR. Here, the amplification was carried out with the start codon of the VGF gene being placed immediately after the VGF-L sequence, and the other sequences of the VGF gene being placed before the VGF-R sequence. Information on primers used for the amplification of the homologous sequences that flank the VGF gene on both sides is shown in Table 10. In such a manner, VGF-L-VGF.sub.ATG(IHD-W) and VGFi-VGF-R(IHD-W) fragments were obtained, and then InFusion cloning thereof into the IHD-W VGF shuttle plasmid was performed.
(78) TABLE-US-00011 TABLE 10 SEQ ID Name Sequence (5′.fwdarw.3′) NO VGF-L-VGF.sub.ATG CGAGCAGCTGAAGCTTGTAAGA SEQ ID forward (IHD-W) TGTTTAGAAAATGGATATTTCC NO: 49 VGF-L-VGF.sub.ATG CGCTTCTAGAGCTAGCCATTTT SEQ ID reverse (IHD-W) TGATGGATTTTGTGTTTATGCT NO: 50 VGF-Ri forward CAGGGGGGATCCTTAATTAATC SEQ ID (IHD-W) GATGAAATATCTGATGTTGTTGTT NO: 51 VGF-Ri reverse TATAGTCAATAGATCTGGAAAA SEQ ID (IHD-W) TGTCTGTTAGTAAATAACCA NO: 52 VGF.sub.ATGTAA CATCGCTTCTAGAGCTAGCTTA SEQ ID forward (IHD-W) CATTTTTGATGGATTTTGTGTTTA NO: 53
(79) The IHD-W VGF shuttle plasmid was treated with NheI and HindIII, and the amplified VGF-L-VGF.sub.ATG(IHD-W) fragment was InFusion cloned thereinto, to construct pSP72-VGF-L-VGF.sub.ATG-p11-LacZ-VGF-R (IHR-W). The constructed pSP72-VGF-L-VGF.sub.ATG-p11-LacZ-VGF-R(IHD-W) was treated with PacI and BglII, and the amplified VGFi-VGF-R(IHD-W) fragment was InFusion cloned thereinto, to construct pSP72-VGF-L-VGF.sub.ATG-p11-LacZ-VGFi-VGF-R(IHD-W).
(80) Next, in order to introduce a stop codon after the start codon of VGF into the pSP72-VGF-L-VGF.sub.ATG-p11-LacZ-VGF-Ri(IHD-W), a point mutation was performed using primers as shown in Table 10, to construct pSP72-VGF-L-VGF.sub.ATGTAA-p11-LacZ-VGFi-VGF-R(IHD-W) (hereinafter referred to as “IHD-W VGF(i) shuttle plasmid”).
Example 2.1.5
Construction of Recombinant IHD-W Vaccinia Virus Vector in which Expression of TK Gene is Inactivated
(81) In order to acquire genes that flank TK gene on both sides and the TK gene from the genomic DNA of IHD-W vaccinia virus and the IHD-W TK shuttle plasmid, PCR was performed, and primers used are shown in Table 11. Here, the amplification was carried out with the start codon of the TK gene being placed immediately after the TK-L sequence, and the other sequences of the TK gene being placed before the TK-R sequence. In such a manner, TK-L-TK.sub.ATG-TF-EGFP-pSE/L-p7.5-Gpt(IHD-W) fragment was obtained from the IHD-W TK shuttle plasmid and TK-TK-R(IHD-W) fragment was obtained from the IHD-W vaccinia genomic DNA. Then, InFusion cloning of the resultants into the IHD-W TK shuttle plasmid was performed.
(82) TABLE-US-00012 TABLE 11 Name Sequence (5′.fwdarw.3′) SEQ ID NO TK-Li forward TATTGTCATGCGGCCGCATGGTCGA SEQ ID NO: (IHD-W) CAACGGCGGACATATTCAGTTGAT 54 TK-Li reverse ATCATGATGGCGGCCGTCAATTAGC SEQ ID NO: (IHD-W) ATCCATTTGATGATC 55 TK-Ri forward ATTCTTTATTGTCATCATGGCGGCC SEQ ID NO: (IHD-W) GCTTTTTATCTGCGCGGTTAACC 56 TK-Ri reverse GTCCGCCGTTGTCGACGGCCCACTC SEQ ID NO: (IHD-W) ATAAATCCAGTT 57
(83) The IHD-W TK shuttle plasmid was treated with EagI and the amplified TKi-TK-R(IHD-W) fragment was InFusion cloned thereinto, to construct pSP72-TK-L-TKi-TK-R(IHD-W). The constructed pSP72-TK-L-TKi-TK-R(IHD-W) was treated with NotI and SalI, and the amplified TK-L-TK.sub.ATG-TF-EGFP-pSE/L-p7.5-Gpt(IHD-W) fragment was InFusion cloned thereinto, to construct pSP72-TK-L-TK.sub.ATG-TF-EGFP-pSE/L-p7.5-Gpt-TKi-TK-R(IHD-W) (hereinafter referred to as “IHD-W TK(i) shuttle plasmid”).
Example 2.1.6
Construction of Recombinant IHD-W Vaccinia Virus Vector in which Expression of K3L Gene is Inactivated
(84) A gene that flanks K3L gene on the left side and a part of the K3L gene in the genomic DNA of IHD-W vaccinia virus were acquired through PCR. Primers used are shown in Table 12. Here, a K3L-L-K3Li(IHD-W) fragment which was amplified and includes a part that excludes and follows the start codon of the K3L gene was obtained and then InFusion cloning thereof into the IHD-W K3L shuttle plasmid was performed.
(85) TABLE-US-00013 TABLE 12 Name Sequence (5′.fwdarw.3′) SEQ ID NO K3L-Li forward GTTAGATCAGTGTACGTA SEQ ID NO: 58 (IHD-W) TATTTAGAT K3L-Li reverse TGGGTTTGGAAAGCTTCT SEQ ID NO: 59 (IHD-W) TGCATTTTGTTATTCGT K3L-Ri forward CGCAGATAAAAACATATC SEQ ID NO: 60 (IHD-W) CTTGTTAAC K3L-Ri reverse GTTAACAAGGATATGTTT SEQ ID NO: 61 (IHD-W) TTATCTGCG
(86) The IHD-W K3L shuttle plasmid was treated with SnaBI and HindIII, and the amplified K3Li-L-K3L(IHD-W) fragment was InFusion cloned thereinto, to construct pSP72-K3L-L-K3Li(IHD-W). In order to introduce the start codon of K3L into the constructed pSP72-K3L-L-K3Li-p7.5-DsRed-TF-K3L-R(IHD-W), a point mutation was performed using primers as shown in Table 12, so that pSP72-K3L-L-K3Li-p7.5-DsRed-TF-K3L.sub.ATG-K3L-R(IHD-W) (hereinafter referred to as “IHD-W K3L(i) shuttle plasmid”) was finally constructed.
Example 2.2
Construction of Recombinant IHD-W Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
Example 2.2.1
Production of Recombinant IHD-W Vaccinia Virus in which K3L Gene is Deleted
(87) Using the IHD-W K3L shuttle plasmid as constructed in Example 2.1.3., a vaccinia virus in which K3L gene is deleted was produced by the following method.
(88) In order to secure a recombinant virus, HeLa cells were prepared in a 6-well plate at a condition of 3×10.sup.5 cells/well and in a state of MEM medium containing 2% fetal bovine serum. Then, the HeLa cells were transfected with 2 μg of the IHD-W K3L shuttle plasmid using jetPRIME and simultaneously treated with 0.05 MOI of IHD-W wild-type vaccinia virus. After 4 hours of incubation, the medium was replaced with MEM medium containing 5% fetal bovine serum, and then the cells were further incubated for 48 hours. Finally, the infected cells were collected with 500 μl of the medium, and then the cells were lysed by repeating freezing and thawing three times. The cell lysate was repeatedly subjected to freezing and thawing three times, to obtain the crude virus. The crude virus was used and repeatedly subjected to plaque isolation by a conventional method so that purely isolated recombinant IHD-W vaccinia virus K was obtained.
Example 2.2.2
Production of Recombinant IHD-W Vaccinia Virus in which VGF and TK Genes are Deleted
(89) The VGF and TK shuttle plasmids as constructed in Examples 2.1.1. and 2.1.2, respectively, were used to produce a vaccinia virus in which VGF and TK genes are deleted.
(90) First, recombinant IHD-W vaccinia virus V in which VGF gene is deleted was obtained in the same conditions and methods as in Example 2.2.1, except that the IHD-W VGF shuttle plasmid was used. Thereafter, recombinant IHD-W vaccinia virus VT in which VGF and TK genes are deleted was obtained in the same methods as above, except that the IHD-W TK shuttle plasmid and the recombinant IHD-W vaccinia virus V were used.
Example 2.2.3
Production of Recombinant IHD-W Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
(91) The K3L shuttle plasmid as constructed in Example 2.1.3. was used to produce a recombinant IHD-W vaccinia virus in which VGF, TK, and K3L genes are deleted.
(92) Recombinant IHD-W vaccinia virus VTK in which VGF, TK, and K3L genes are deleted was obtained in the same conditions and methods as in Example 2.2.1, except that the IHD-W K3L shuttle plasmid and the recombinant IHD-W vaccinia virus VT were used.
Example 2.2.4
Production of Recombinant IHD-W Vaccinia Virus in which Expression of VGF Gene is Inactivated and TK and K3L Genes are Deleted
(93) The VGF(i), TK, and K3L shuttle plasmids as constructed in Examples 2.1.4, 2.1.2, and 2.1.3, respectively, were used to produce a recombinant IHD-W vaccinia virus in which expression of VGF gene is inactivated, and TK and K3L genes are deleted.
(94) First, recombinant IHD-W vaccinia virus T in which TK gene is deleted was obtained in the same conditions and methods as in Example 2.2.1, except that the IHD-W TK shuttle plasmid was used. Then, recombinant IHD-W vaccinia virus TK in which TK and K3L genes are deleted was obtained in the same methods as above, except that the IHD-W K3L shuttle plasmid and the recombinant IHD-W vaccinia virus T were used.
(95) In addition, recombinant IHD-W vaccinia virus ViTK in which expression of VGF gene is inactivated, and TK and K3L genes are deleted was obtained in the same methods as above, except that the IHD-W VGF(i) shuttle plasmid and the recombinant IHD-W vaccinia virus TK were used.
Example 2.2.5
Production of Recombinant IHD-W Vaccinia Virus in which Expression of TK Gene is Inactivated and VGF and K3L Genes are Deleted
(96) The TK(i), VGF, and K3L shuttle plasmids as constructed in Examples 2.1.5, 2.1.1, and 2.1.3, respectively were used to produce a recombinant IHD-W vaccinia virus in which expression of TK gene is inactivated and VGF and K3L genes are deleted.
(97) First, recombinant IHD-W vaccinia virus V in which VGF gene is deleted was obtained in the same conditions and methods as in Example 2.2.1, except that the IHD-W VGF shuttle plasmid was used. Thereafter, recombinant IHD-W vaccinia virus VK in which VGF and K3L genes are deleted was obtained in the same methods as above, except that the IHD-W K3L shuttle plasmid and the recombinant IHD-W vaccinia virus V were used.
(98) In addition, recombinant IHD-W vaccinia virus VTiK in which expression of TK gene is inactivated and VGF and K3L genes are deleted was obtained in the same methods as above, except that the IHD-W TK(i) shuttle plasmid and the recombinant IHD-W vaccinia virus VK were used.
Example 2.2.6
Production of Recombinant IHD-W Vaccinia Virus in which Expression of K3L Gene is Inactivated and VGF and TK Genes are Deleted
(99) The K3L(i), VGF, and TK shuttle plasmids as constructed in Examples 2.1.6, 2.1.1, and Example 2.1.2, respectively, were used to produce a recombinant IHD-W vaccinia virus in which expression of K3L gene is inactivated and VGF and TK genes are deleted.
(100) First, recombinant IHD-W vaccinia virus V in which VGF gene is deleted was obtained in the same conditions and methods as in Example 2.2.1., except that the IHD-W VGF shuttle plasmid was used. Thereafter, recombinant IHD-W vaccinia virus VT in which the VGF and TK genes are deleted was obtained in the same methods as above, except that the IHD-W TK shuttle plasmid and the recombinant IHD-W vaccinia virus V were used.
(101) In addition, recombinant IHD-W vaccinia virus VTKi in which expression of K3L gene is inactivated, and VGF and TK genes are deleted was obtained in the same methods as above, except that the IHD-W K3L(i) shuttle plasmid and the recombinant IHD-W vaccinia virus VT were used.
Example 3
Production of Recombinant Lister Vaccinia Virus
Example 3.1
Construction of Recombinant Lister Vaccinia Virus Vector in which VGF, TK, and K3L Genes are Deleted
Example 3.1.1
Construction of Recombinant Lister Vaccinia Virus Vector in which K3L Gene is Deleted
(102) Genes that flank K3L gene on both sides in the genomic DNA of Lister vaccinia virus (ATCC, VR-1549) were amplified by PCR. Here, information on primers used for the amplification of homologous base sequences that flank the K3L gene on both sides is shown in Table 13. In such a manner, K3L-L(Lister) and K3L-R(Lister) fragments were obtained and then InFusion cloning thereof was performed using the pSP72-p7.5-DsRed generated in the construction process of the IHD-W K3L shuttle plasmid.
(103) TABLE-US-00014 TABLE 13 Name Sequence (5′.fwdarw.3′) SEQ ID NO VGF-R forward CGCAGATAAAAAGATATCCTTGT SEQ ID (Lister) TAACGGGCTCGTAAATTG NO: 62 VGF-R reverse GGAGACCGGCAGATCTTGATAAT SEQ ID (Lister) ACACATATTTATTTAGGAAGCG NO: 63 VGF-L forward CACTATAGAACTCGAGCATATGT SEQ ID (Lister) TTAAACGACGCATTATCTG NO: 64 VGF-L reverse TGGGTTTGGAAAGCTTTTTTTAT SEQ ID (Lister) ACCGAACATAAAAATAAGG NO: 65
(104) The pSP72-p7.5-DsRed was treated with EcoRV and BglII, and the amplified K3L-R(Lister) fragment was InFusion cloned thereinto, to construct pSP72-p7.5-DsRed-K3L-R(Lister). The constructed pSP72-p7.5-DsRed-K3L-R(Lister) was treated with XhoI and HindIII, and the amplified K3L-L(Lister) fragment was InFusion cloned thereinto, to construct pSP72-K3L-L-p7.5-DsRed-K3L-R(Lister) (hereinafter referred to as Lister K3L shuttle plasmid) which is a K3L shuttle plasmid.
Example 3.2
Production of Recombinant Lister Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
Example 3.2.1
Production of Recombinant Lister Vaccinia Virus in which VGF and TK Genes are Deleted
(105) In order to secure a recombinant virus, HeLa cells were prepared in a 6-well plate at a condition of 3×10.sup.5 cells/well and in a state of MEM medium containing 2% fetal bovine serum. Then, the HeLa cells were transfected with 2 μg of the IHD VGF shuttle plasmid as constructed in Example 2.1.1. using jetPRIME and simultaneously treated with 0.05 MOI of Lister wild-type vaccinia virus. After 4 hours of incubation, the medium was replaced with MEM medium containing 5% fetal bovine serum, and then the cells were further incubated for 48 hours. Finally, the infected cells were collected with 500 μl of the medium, and then the cells were lysed by repeating freezing and thawing three times. The cell lysate was called crude virus. The produced crude virus was used and subjected to plaque isolation 6 times, so that purely isolated recombinant Lister vaccinia virus V was secured.
(106) Recombinant Lister vaccinia virus VT in which the VGF and TK genes are deleted was secured in the same conditions and methods as described above, except that the recombinant Lister vaccinia virus V and the IHD-W TK shuttle plasmid as constructed in Example 2.1.2. were used.
Example 3.2.2
Production of Recombinant Lister Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
(107) In order to secure a recombinant virus, recombinant Lister vaccinia virus TK in which VGF, TK, and K3L genes are deleted was obtained in the same conditions and methods as in Example 3.2.1, except that the Lister K3L shuttle plasmid and the recombinant Lister vaccinia virus VT were used.
(108) II. Identification of Tumor-Killing Ability of Recombinant Vaccinia Virus In Vitro
Experimental Example 1
Identification of Cancer Cell-Killing Ability of Recombinant Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
(109) CCK-8 analysis was performed to identify whether the recombinant vaccinia virus VTK as produced in Example I. has a killing ability against various types of cancer cells.
(110) In order to identify a cell-killing ability of the recombinant virus in various human cancer cell lines, cancer cell lines were prepared as shown in Table 14, incubated in an incubator under a condition of 37° C. and 5% CO.sub.2, and then aliquoted into 96-well plates.
(111) TABLE-US-00015 TABLE 14 Carcinoma Cell line Medium used Brain cancer U-87MG (ATCC, HTB-14) MEM medium containing 10% fetal bovine Liver cancer Hep3B (ATCC, HB-8064) serum Prostate cancer DU145 (ATCC, HTB-81) Head and neck FaDu (ATCC, HTB-43) cancer Fibrosarcoma HT-1080 (KCLB, 10121) Breast cancer T-47D (ATCC, HTB-133) RPMI medium containing 10% fetal bovine serum and recombinant insulin Pancreatic cancer MIA PaCa-2 (KCLB, 21420) DMEM medium containing 10% fetal bovine serum Colorectal cancer SW620 (KCLB, 60068) RPMI medium containing 10% fetal bovine Ovarian cancer A2780 (Sigma-Aldrich, serum 93112519) Lung cancer A549 (ATCC, Cat No. CCL-185)
(112) Here, aliquoting was carried out such that the number of cells per well was 5×10.sup.4 for SW620, 2×10.sup.4 for A2780, A549, DU145, T-47D, and FaDu, 1×10.sup.4 for Hep3B and HT-1080, and 5×10.sup.3 for MIA PaCa-2 and U-87 MG. After 24 hours of the incubation, the cell lines were infected with the recombinant IHD-W vaccinia virus VTK, the recombinant WR vaccinia virus ViTiKi, or the recombinant Lister vaccinia virus VTK so that 0.5 MOI was achieved for each virus. Here, cells which had not been treated with a virus were used as a control group. After 3 to 5 days, the cells were stained with CCK-8 (Dojindo, Cat No. CK04) solution to identify survival rates of the cancer cell lines. The results are shown in
(113) As shown in
Experimental Example 2
Identification of Cancer Cell-Killing Ability of Recombinant Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted or Expression thereof is Inactivated
(114) In order to identify whether the genes of the present invention whose expression is suppressed in a recombinant vaccinia virus exhibit a different killing ability against cancer cells depending on methods of suppressing expression thereof, a degree of death of the colorectal cancer cell line SW620 caused by the recombinant IHD-W vaccinia viruses VTK, ViTK, VTiK, and VTKi as produced in Examples 1.2.9. to 1.2.12. was identified.
(115) First, the human colorectal cancer cell line SW620 was incubated in an incubator under a condition of 37° C. and 5% CO.sub.2 using RPMI medium containing 2% fetal bovine serum, and aliquoted into a 96-well plate. Here, the SW620 cells were aliquoted to be 5×10.sup.4 per well. After 24 hours of the incubation, the cell line was respectively infected with recombinant IHD-W vaccinia viruses VTK, ViTK, VTiK, and VTKi so that 0.001, 0.01, 0.1, or 1 MOI was achieved. After 3 days, the cells were stained with the CCK-8 solution to identify ED.sub.50. The results are shown in
(116) As can be seen from the results, both the virus in which the VTK genes are deleted and expression thereof is completely suppressed and the virus in which expression of the VTK genes is inactivated by structural destruction of the genes exhibited an excellent cancer cell-killing ability without a statistically significant difference.
Experimental Example 3
Identification of Cancer Cell-Selective Killing Ability of Recombinant Vaccinia Virus in which VGF, TK, and K3L Genes are Deleted
(117) Identification was made as to whether a recombinant vaccinia virus in which expression of the three genes of VGF, TK, and K3L required for proliferation of a vaccinia virus in cells is simultaneously suppressed has a selectively increased killing ability against cancer cells relative to normal cells as compared with a case of a recombinant vaccinia virus in which expression of the two genes of VGF and TK is simultaneously suppressed or a recombinant vaccinia virus in which expression of one gene of K3L is suppressed.
(118) First, NHBE (Lonza, CC-2540) which is a normal human cell line and SW620 which is a human colorectal cancer cell line were incubated in an incubator under a condition of 37° C. and 5% CO.sub.2 using BEBM Basal medium (Lonza, 3171) containing BEGM SingleQuot Kit Suppl. & Growth Factors (Lonza, CC-4175) for NHBE and RPMI medium containing 10% fetal bovine serum for SW620, and aliquoted into 96-well plates. Here, the NHBE and SW620 cells were respectively aliquoted so as to be 5×10.sup.3 and 5×10.sup.4 per well. After 24 hours of the incubation, the cell lines were respectively infected with recombinant vaccinia virus IHD-W K, VT, VTK, or WR K, ViTi, ViTiKi so that 0.001, 0.01, 0.1, or 1 MOI was achieved. After 3 days, the cells were stained with a CCK-8 solution to obtain ED.sub.50 values. The ED.sub.50 against the cancer cells was divided by the ED.sub.50 of the normal cells, and then a comparison of a selective killing ability against cancer cells relative to normal cells was made based on a value corresponding to VTK(IHD-W) or ViTiKi(WR) in each virus group. The results are shown in
(119) As shown in
(120) In conclusion, it can be identified that the recombinant vaccinia virus in which expression of the three genes of VGF, TK, and K3L is suppressed exhibits a superior cancer cell-selective killing ability as compared with the recombinant vaccinia virus in which expression of the K3L gene or the VGF and TK genes is suppressed.
(121) III. Identification of Anti-Cancer Effects of Recombinant Vaccinia Virus In Vivo
Experimental Example 4
Identification of Anti-Cancer Effects of Recombinant Vaccinia Virus in which Expression of VGF, TK, and K3L Genes is Suppressed in Tumor Animal Model
(122) Anti-tumor effects of the recombinant IHD-W vaccinia viruses VT and VTK, or the recombinant WR vaccinia viruses ViTi and ViTiKi, as produced in Example I, were identified in a mouse model.
(123) First, SW620 cell line which is a colorectal cancer cell line was prepared by being incubated in RPMI medium containing 10% fetal bovine serum. In a case where cells that were being incubated in an incubator under a condition of 37° C. and 5% CO.sub.2 occupy 70% to 80% of a dish, the cells were prepared for cancer cell inoculation. Prepared respective cancer cells were centrifuged at 1,500 rpm for 5 minutes at 4° C. to remove all supernatant, and the cells were prepared by adding an excipient (RPMI medium) thereto. 5×10.sup.6 cells thus prepared were injected subcutaneously in the right flank of a nude mouse (nu/nu BALB/c mouse; Charles River Japan (Yokohama)) to prepare a colorectal cancer mouse model. After one week, in a case where a tumor grew to a size of approximately 70 to 100 mm.sup.3, the prepared mouse models were divided into groups to be treated with PBS, IHD-W VT, IHD-W VTK, WR ViTi, and WR ViTiKi with 6 mice per group, and then viruses were administered once into the tumor at 5×10.sup.6 TCID.sub.50. The results of identifying a size of cancer cells after the administration of the viruses are shown in
(124) As shown in
Experimental Example 5
Identification of Safety of Recombinant Vaccinia Virus in which Expression of VGF, TK, and K3L Genes is Suppressed
(125) In order to evaluate the safety of the recombinant vaccinia viruses VT (ViTi) and VTK (ViTiKi) of IHD-W and WR strains as produced in Example I, weight change, mortality rate, and inflammatory response of mice receiving the viruses were identified and are shown in
(126) As shown in
(127) In addition, as shown in
(128) From the above results, it can be seen that a case where expression of the three genes of VGF, TK, and K3L is suppressed in the recombinant vaccinia virus is remarkably superior in terms of safety in vivo as compared with a case where expression of the two genes of VGF and TK is suppressed in the recombinant vaccinia virus.