Glycolipids and pharmaceutical compositions thereof for use in therapy
11248016 · 2022-02-15
Assignee
Inventors
- ANDREW BOTTLEY (NOTTINGHAMSHIRE, GB)
- CHRISTOPHER HAYES (NOTTINGHAMSHIRE, GB)
- GRAHAM SEYMOUR (NOTTINGHAMSHIRE, GB)
- ANNA GRABOWSKA (NOTTINGHAMSHIRE, GB)
- PHILIP CLARKE (NOTTINGHAMSHIRE, GB)
Cpc classification
A61K45/06
HUMAN NECESSITIES
A23V2002/00
HUMAN NECESSITIES
A61P21/00
HUMAN NECESSITIES
A61P25/28
HUMAN NECESSITIES
C07H15/06
CHEMISTRY; METALLURGY
A61K2300/00
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A23L33/30
HUMAN NECESSITIES
A61K31/7032
HUMAN NECESSITIES
A61K31/7032
HUMAN NECESSITIES
International classification
C07H15/06
CHEMISTRY; METALLURGY
A61K45/06
HUMAN NECESSITIES
A23L33/00
HUMAN NECESSITIES
A61K31/7032
HUMAN NECESSITIES
Abstract
The invention may provide, in part, compounds for use as antiproliferative, chemotherapeutic, antiviral, cell sensitising or adjuvant agents, and pharmaceutical compositions including the compounds. The compounds may be for use in treating diseases and disorders related to cell proliferation such as cancer, or in treating diseases and disorder which are linked to aberrant control of protein synthesis, such as cancer, viral infection, muscle wasting, autistic spectrum disorders, Alzheimer's disease, Huntingdon's disease and Parkinson's disease.
Claims
1. A compound having the structure ##STR00043## or a pharmaceutically acceptable salt thereof.
2. A pharmaceutical composition comprising the compound of claim 1, or a pharmaceutically acceptable salt thereof, together with a pharmaceutically acceptable carrier, diluent or excipient.
3. A nutraceutical composition comprising the compound of claim 1, or a pharmaceutically acceptable salt thereof together with a nutraceutically acceptable carrier, diluent or excipient.
4. A kit comprising the compound of claim 1, or a pharmaceutically acceptable salt thereof, and an anti-cancer agent, wherein the anti-cancer agent is provided in a form suitable for, and/or with instructions for, administration in a daily dosage which is significantly reduced compared to the dosage of the anti-cancer agent if administered alone.
5. A method for the treatment of a subject having a disease or condition selected from the group consisting of cancer, autistic spectrum disorders, Alzheimer's disease, Parkinson's disease, Huntington's disease, muscle wasting and viral infection, the method comprising administering a compound of claim 1 to the subject.
6. The method of claim 5, wherein the compound is selected from the group consisting of an inhibitor of protein translation, a chemotherapeutic agent, a cell sensitising agent, an antiproliferative agent, an antiviral agent and an adjuvant.
Description
BRIEF DESCRIPTION OF THE FIGURES
(1) Embodiments of the present invention will now be described, purely by way of example, with reference to the accompanying drawings, in which:
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EXAMPLES
(29) A Compound of Formula I Inhibits Protein Synthesis
(30) Polysome Profiling
(31) By using polysome ribosome profiling a compound of Formula I, as exemplified in these experiments by the compound of Formula II (
(32) Use of the Compound(s) for the Inhibition of eIF4A
(33) By using a well characterised luciferase based reporter assay it was further determined that this class of molecule functions as a protein synthesis inhibitor via targeting the helicase eIF4A. The cricket paralysis virus RNA contains a well-documented internal ribosomal entry site (CrPV IRES); this internal ribosomal entry site does not require eIF4A for active translation (Bordeleau et al, 2006 Nature Chemical Biology, 2: 213-220). Cap-dependent (eIF4A dependant) translation (firefly luciferase signal), but not CrPV IRES-dependent translation (Renilla luciferase signal), was inhibited after 3 hours treatment with the Synthetic version of the natural molecule. Since the lack of a requirement for eIF4A for CrPV translation is well documented (e.g. Bordeleau et al, 2006 Nature Chemical Biology, 2: 213-220) this data further demonstrates inhibition is selective and provides evidence that the target is the translation initiation factor eIF4A.
(34) Reporter Assays
(35) Reporter assays were used to demonstrate that the compound of Formula II is an inhibitor of protein synthesis. Firefly/renilla luciferase reporter experiments conducted using cultured human cell lines show that the compound of Formula II is a selective and facile inhibitor of protein synthesis (schematics of the reporter constructs are included in
(36) The degree of translation inhibition is shown to be equivalent to that of a known inhibitor of translation, hippuristanol (
(37) Firefly luciferase reporter experiments conducted with the 5′UTRs of genes which negatively associate with disease demonstrate that inhibition is both selective and relevant to the treatment of disease such as Alzheimer's disease, cancer and autistic spectrum disorders by selectively altering the translation of select transcripts while the translation of housekeeping or cytoprotective genes remains unaffected (
(38) The data also supports the use of compounds of Formula I for the treatment of diseases such as Alzheimer's disease, cancer and autistic spectrum disorders.
(39) Use of a Compound of Formula I in the Treatment of Cancer
(40) A compound of Formula I or Ia, as exemplified by the compound of Formula II, may be used alone in the treatment of cancer as demonstrated by its ability to act as an antiproliferative agent when used as a treatment in isolation (
(41) Similar results are seen with A549 lung cancer cells (
(42) A compound of Formula I or Ia, as exemplified by the compound of Formula II, may also be used in combination with other chemotherapeutic agents for the treatment of cancer. The compound of Formula I or Ia may sensitise cells to the chemotherapeutic agents thereby reducing the dose of chemotherapeutic agent needed. This is particularly advantageous as chemotherapeutic agents can be toxic and particularly difficult for patients to tolerate. The side effects of chemotherapeutic agents at the doses currently required are in some cases so severe that the use of potentially effective drugs is precluded.
(43) Known inhibitors of protein synthesis such as hippuristanol have proven potent anti-cancer properties when used in combination with chemotherapeutic agents such as Cisplatin™ or Doxorubicin™. However hippuristanol is naturally found in coral to is scarce and expensive to obtain, furthermore it is very difficult and expensive to synthesise. The data presented here demonstrates that a compound of Formula I or Ia, exemplified by the compound of Formula II, can be used as an adjuvant in combination with chemotherapeutic agents to enhance cell death. In particular this combination has a potent effect at slowing proliferation or killing cancer cells. Slow growing and difficult to treat tumour cell types such as A549 lung cancer cells, SH-SY5Y neuroblastoma or SKOV-3 cancer cells are all sensitised by exposure to Formula II to very low doses of Cisplatin™ (
(44) The results in
(45) The results shown in
(46) The results in
(47) ##STR00036##
(48)
(49) Use of the compound(s) for the treatment of autism.
(50) Direct evidence is provided that inhibiting eIF4A represents a new route to treating ASD based on the data presented by Gkogkas et al. Nature 2013, 493:371-7. Firefly/renilla luciferase reporter experiments conducted using cultured human cell lines show that eIF4A is a viable therapeutic target for the treatment of ASD and that eIF4A1 inhibition using either hippuristanol or compound of the synthetic version of the natural molecule and synthetic derivatives (data also shown for 46) result in the selective inhibition of NLGN1 translation.
(51) Treatment with the compound of Formula II (and compound 46) (
(52) The level of translation inhibition of NLGN1 is shown to be equivalent to that induced by a known inhibitor of eIF4A, hippuristanol. This data further demonstrates that the compound acts to target the translation initiation complex and also provides proof that the translation of NLGN1 is relatively more dependent on the activity of eIF4A in comparison with NLGN2. Data also shows that the inhibitory effects observed are not due to the anti-proliferative activity of the compound at this dose and treatment time.
(53) Materials and Methods
(54) Production of the Compound of Formula II The compound of Formula II is a glycoglycerol lipid, the synthesis of such compounds is well known. The skilled man could readily make the compound of Formula II, or the an acetyl derivative thereof, by following the reaction mechanism described in Manzo, E.; Letizia Ciavatta, M.; Pagano, D.; Fontana, A. Tetrahedron Lett. 2012, 53, 879.
(55) Alternatively the compound of Formula II may be recovered from plant materials, for example tomatoes. Tomatoes were grown under standard glass house, harvested and snap frozen in liquid nitrogen. Tissue was ground under liquid nitrogen to form a powder, mixed with 2 volumes of MeOH (wt/vol) and heated at 50° C. for 10 minutes. This mixture was then centrifuged at 4000 RPM to pellet cellular debris and the supernatant transferred to a clean tube. The MeOH was then partitioned into a chloroform phase, and the chloroform layer then dried down to yield a pellet.
(56) The crude extract was adsorbed onto chromatography grade silica gel and dry-loaded onto a silica gel flash chromatography column. The products were eluted with a gradient of 0-20% methanol in dichloromethane, and fractions were collected and tested for biological activity. The active fractions were evaporated in vacuo to give an oil (155 mg). Further purification was performed by batch-wise reverse phase HPLC (Varian Prostar; Polaris 5 micron C18-A column (250 mm×10 mm); gradient elution 80% H2O 20% MeCN to 0% H2O100% MeCN following the following method: 80% H2O 20% MeCN 2 min; 0% H2O 100% MeCN 20 min; 0% H2O 100% MeCN 48 min; 80% H2O 20% MeCN 50 min). The active fractions (eluting at 30 min) were collected and evaporated in vacuo to give the active molecule whose NMR (1H and 13C), HRMS and IR data confirmed it to be the structure shown in
(57) Cell Culture Conditions
(58) Cells were cultured and maintained using standard conditions as described on the American Type Culture Collection Web page (see ATCC for details http://www.lgcstandards-atcc.org) in appropriate media e.g. Dulbecco's Modified Eagle's Medium (DMEM) or Roswell Park Memorial Institute medium (RPMI) (Sigma) supplemented with 10% FCS, and 1% Penicillin/Streptomycin (Life Technologies).
(59) Polysome Profiling
(60) Polysome profiles were obtained using sucrose density centrifugation. Briefly one 15 cm plate of cultured Neuroblastoma cells (SH-SY5Y) were grown per treatment to a confluency of 70%. Cells were then treated with either active or equivalent DMSO vehicle control for 20 min. Cells were harvested, lysed and loaded onto sucrose gradients then centrifuged at 38,000 RPM for 2 hours (as described in Bottley et al, 2010). Gradients were fractionated and polysome profiles determined through a continuous monitoring at absorbance 260 nm (described previously Johannes et al. 1999).
(61) Transient Transfection Conditions and Luciferase Reporter Constructs
(62) Experiments conducted using Firefly luciferase reporter plasmids containing the 5′ untranslated regions (UTRs) of the genes amyloid precursor protein (APP), thioredoxin (TXN) were conducted with reagents and materials described by Bottley et al, 2010. Experiments conducted using Firefly luciferase reporter plasmids containing the 5′ UTRs of the genes EGFR, BACE1 and Actin were conducted with reagents and materials described by Webb, 2012 (http://etheses.nottingham.ac.uk/2724/). Firefly luciferase reporter plasmids containing the 5′ untranslated regions (UTRs) of the genes Neuroligin 1 and Neuroligin 2 were a kind gift from Professor Nahum Sonenberg (McGill) and used as described by Gkogkas et al, Nature 2013, 493:371-7.
(63) Cells were transfected using FuGene 6 (Roche) following the manufacturer's instructions. The activities of firefly and renilla luciferase in lysates prepared from transfected cells were measured using a commercially available Luciferase reporter assay system (Promega) and light emission was measured over a 10 sec interval using a TECAN luminometer. For each experiment described, data was obtained from a minimum of at least 3 biological repetitions per treatment.
(64) Cell Proliferation Experiments
(65) Prior to treatment cells were cultured to an appropriate confluency in 96 well tissue culture plates (Fisher). Cells remained either supplemented with fresh media or treated with fresh media containing active or an equivalent volume of DMSO (vehicle control). Where used, Cisplatin™ was diluted to a stock concentration in Dimethylformamide (DMF), then handled as per the manufacturer's instructions. To determine relative cell viability, reagents WST-1 (Roche) or MTT (Sigma) were used as per the manufacturer's instructions and absorbance at 450 nm measured using a Victor plate reader (Perkin Elmer).
(66) Primary Canine Tumour Cell Experiments.
(67) Biopsy tissue was removed from knee, abdomen and skin of a 7 year old dog. Cells harvested from the canine source were confirmed through histological evaluation to be histiocytic sarcoma tumour cells. Samples were fragmented prior to collagenase treatment in controlled conditions at 37° C. for 3 hours. Cells were then sedimented by low speed centrifugation and resuspended in selective culture media using proprietary methods and materials developed by Petscreen Ltd. Experiments were performed in 96 well tissue culture plates with a minimum of three biological repetitions per treatment.
(68) Production of the Compounds of Formula I and La in
(69) The compounds of Formula I and Ia in
(70) The synthesis of glycoglycerol lipids and the like is well known and it is within the skilled person's ability to modify known reaction techniques for synthesising glycoglycerol lipids to produce the compounds of Formula I and Ia in
(71) Specifically, the compounds of Formula I and Ia in
(72) This synthesis is a versatile and simple procedure based on trichloro-acetimidate methodology and the use of peracetate sugar substrates. The chemical strategy allows stereoselective preparation of lipid derivatives, and other related derivatives, of sugars such as galactose and glucose and mannose. The synthetic approach is designed to obtain enantiomerically pure regio- and stereo-isomers including derivatives containing poly-unsaturated fatty acids.
(73) In essence, the synthesis recognises that glycoglycerol lipids such as:
(74) ##STR00037##
(75) can be derived from the starting materials:
(76) ##STR00038##
(77) The required variations on these starting materials to achieve the compounds in
(78) The manufacture of each of the compounds in
(79) ##STR00039##
(80) The majority of the compounds made and illustrated in
(81) Synthetic Route to Compound 159
(82) The synthetic route to 159 followed an identical route to that used for all other esters mentioned in the above Tetrahedron Letters paper by Manzo, E et al, with the only difference being that diphenyl acetic acid was used instead of a fatty acid to provide the R and R′ groups.
(83) Synthetic Route to Compound 139
(84) ##STR00040##
(85) Preparation of Ketone A
(86) The ketone A (step 1 above) was synthesised from galactose according to: A Cavezza, C. Boulle, A. Guéguiniat, P. Pichaud, S. Trouille, L. Ricard, M. Dalko-Csiba, Bioorganic & Medicinal Chemistry Letters 2009, 19, 845-849.
(87) Preparation of Ketone B
(88) To a stirred suspension of the known ketone A (1.81 g, 8.1 mmol) in dichloromethane (8 mL) and pyridine (4.90 mL, 60.0 mmol) at OC was added acetic anhydride (4.72 mL, 4.72 mmol) drop wise. The resulting reaction mixture was warmed to room temp and stirred overnight (ca 16 hours). The reaction was poured in to water and extracted with dichloromethane (3×50 mL), the combined organic phase were washed with 3M HCl (3×50 mL), sat NaHCO.sub.3(50 mL), brine (50 mL), dried over MgSO4 and evaporated, to afford a gum which was purified by silica gel chromatography (1:1 to 0:1 Petrol:Et2O) to afford the tetra acetate ketone B (2.87 g, 7.43 mmol, 57%) as a pale yellow solid.
(89) Preparation of Alcohol C
(90) To a stirred solution of the ketone B (420 mg, 1.08 mmol) in THF (10 mL) at −78° C. was added MeMgBr (1.4M, 1.85 mL, 2.6 mmol) drop wise. The resulting solution was stirred at −78° C. for 4 hours. The reaction was quenched by the addition of sat. ammonium chloride solution (20 mL) and extracted with EtOAc (3×25 mL), the combined organic phase were washed with brine (25 mL), and dried over MgSO4 and evaporated, to afford a gum which was purified by silica gel chromatography (1:1 to 0:1 Petrol:EtOAc) to afford the alcohol C (133 mg, 0.328 mmol, 30.5%) as a colourless solid.
(91) Preparation of Ester D
(92) DCC coupling according to a slightly modified procedure reported in Tetrahedron Lett. 2012, 53, 879.
(93) To a stirred solution of the alcohol C (126 mg, 0.31 mmol) in dichloromethane (6 mL) at room temp under argon was added linolenic acid (94.5 mg, 0.34 mmol), dicyclohexylcarbodiimide (70.6 mg, 0.34 mmol) and DMAP (8.4 mg, 0.068 mmol), the reaction mixture was stirred overnight (ca 16 hours) at room temp. The reaction was cooled to −20° C., and filtered, the filtrated was and evaporated under reduced pressure and the mixture was purified by silica gel chromatography (8:1 to 4:1 Petrol:EtOAc) to afford the ester D (115 mg, 0.173 mmol, 55.8%) as a colourless oil.
(94) Preparation of Compound 139
(95) Deprotection according to the procedure reported in Tetrahedron Lett. 2012, 53, 879.
(96) To a stirred solution of the ester D (105 mg, 0.158 mmol) in aq. ethanol (85%) (5 mL) at 44° C. was added hydrazine mono-hydrate (63 μL, 1.26 mmol), the reaction mixture was stirred at 44° C. for 4 hours. The solvent was removed under a stream of nitrogen and the residue was purified by silica gel chromatography 10:1 dichloromethane:MeOH) to afford the compound 139 (38 mg, 0.077 mmol, 48%) as a colourless oil.
(97) Synthetic Route to Compounds 99, 218, 184, 215 and 46
(98) The modified linker unit as used in compounds 99, 218, 184, 215 and 46 (where there is an additional CH.sub.2 within the linker unit) as compared to the linker unit illustrated in the Tetrahedron Letters reaction scheme above) is not commercially available; however it is a known compound, whose synthesis is reported in the following papers: C. Iwata, N. Maezaki, K. Hattori, M. Fujita, Y. Moritani, Y. Takemoto, T. Tanaka, T. Imanishi, Chemical and Pharmaceutical Bulletin, 1993, 41, (2), 339-345 R. Schillera, L. Tichotováa, J. Pavlíka, V. Buchtab, B Melicharc, I. Votrubad, J. Kuneša, M. Špuláka, M. Poura, Bioorganic & Medicinal Chemistry Letters, 2010, 20, (24), 7358-7360 H. A. Bates, J. Farina, M. Tong, J. Org. Chem., 1986, 51 (14), 2637-2641.
(99) The linker unit was therefore synthesised according to the known methodology, before being used in the Tetrahedron Letters reaction scheme.
(100) To illustrate this, the synthetic route to compound 46 is set out below:
(101) ##STR00041##
(102) This synthesis illustrates the straightforward nature of the modifications needed to the reaction scheme from the above Tetrahedron Letters paper by Manzo, E et al to synthesise compounds having an altered linker unit.
(103) It will be noted that this route is almost identical to that described in the Tetrahedron Letters paper but it does differ in Step 4 where a modified alcohol is used to modify the linker unit. The preparation of this modified alcohol is given in J. Org. Chem. 1986, 51, 2637 (it is structure 14 in that paper).
(104) The adaptations to the above synthetic route to compound 46 that would be required to reach the compounds 99, 218, 184 and 215 (which also include the modified linker unit) are easily apparent. The differences lie in the choice of sugar, and whether it is protected or not, and the choice of R and R′ groups.
(105) Synthetic Route to Compounds 146 and 154
(106) ##STR00042##
(107) Preparation of Compound 146
(108) To a stirred solution of the commercially available galactose bis-acetonide (260 mg, 1.00 mmol) in dichloromethane (10 mL) at room temp under argon was added linolenic acid (278 mg, 1.0 mmol), dicyclohexylcarbodiimide (206 mg, 1.0 mmol) and DMAP (24 mg, 0.2 mmol), the reaction mixture was stirred overnight (ca 16 hours) at room temp. The reaction was cooled to −20° C., and filtered, the filtrated was and evaporated under reduced pressure and the mixture was purified by silica gel chromatography (8:1 to 2:1 Petrol:Et2O) to afford the compound 146 (438 mg, 0.84 mmol, 84%) as a colourless oil.
(109) Preparation of Compound 154
(110) To a stirred solution of the compound 146 (106 mg, 0.20 mmol) in DCM (1 mL) at 0° C. was added trifluoroacetic acid (1 mL), and the reaction was stirred for 12 hours. The reaction was evaporated under reduced pressure and the residue was purified by silica gel chromatography (10:1 DCM:MeOH) to afford compound 154 as a mixture of a anomers (60 mg, 0.136 mmol, 68%) as a colourless oil.