Fragment ion mass spectra measured with tandem time-of-flight mass spectrometers

09761430 · 2017-09-12

    Inventors

    Cpc classification

    International classification

    Abstract

    The present invention provides a method for acquiring fragment ion mass spectra with a time-of-flight mass spectrometer, whereby mixed mass spectra with fragment ions of different parent ion species are acquired and compared with each other in such a way that the signals of those fragment ions which originate from the same parent ion species are determined. The time-of-flight mass spectrometer contains an ion source, a flight path, a reflector and an ion detector. The flight path is preferably field-free and is positioned before the reflector, and the reflector preferably has a quadratically increasing reflection potential.

    Claims

    1. A method for the mass spectrometric measurement of fragment ions with a time-of-flight mass spectrometer which contains an ion source, a flight path, a reflector and an ion detector, wherein (a) at least two mixed time-of-flight spectra are acquired with an instrument parameter which is different in each case, the mixed time-of-flight spectra containing signals of fragment ions from more than one parent ion species, and the fragment ions being produced on the flight path before the reflector, (b) the mixed time-of-flight spectra are compared with each other in order to thus identify the signals of those fragment ions which originate from one parent ion species and one signal originating from the same fragment ion species is chosen in each of two mixed time-of-flight spectra, and (c) the mass-to-charge ratios of the fragment ion and the associated parent ion are determined as the solution of the following equations:
    T.sub.1=Sys(m/q.sub.m,M/q.sub.M,P.sub.1)
    T.sub.2=Sys(m/q.sub.m,M/q.sub.M,P.sub.2), where M and q.sub.M are the mass and the charge of the parent ion, respectively; m and q.sub.m the mass and the charge of the fragment ion, respectively; T.sub.1 and T.sub.2 the times of flight of the two signals of the fragment ion species determined from the mixed time-of-flight spectra; P.sub.1 and P.sub.2 the values of the changed instrument parameter which are used in the acquisition of the time-of-flight spectra; and Sys is the system function of the time-of-flight mass spectrometer which gives the time of flight of a fragment ion as a function of the instrument parameter, and the mass-to-charge ratio of the fragment ion and the associated parent ion.

    2. The method according to claim 1, wherein, after the reflector, the ions pass through an acceleration region or a second flight path, both being shorter than the flight path before the reflector, and are then detected in the ion detector.

    3. The method according claim 1, wherein the fragment ions in the flight path before the reflector are formed by the decomposition of metastable parent ions and/or are generated there from the parent ions in a fragmentation cell.

    4. The method according to claim 1, wherein the several parent ion species are selected from a larger number of ionic species.

    5. The method according to claim 1, wherein the ion source uses an ionization by matrix-assisted laser desorption (MALDI).

    6. A method for the mass spectrometric measurement of fragment ions with a time-of-flight mass spectrometer which contains an ion source, a flight path, a reflector and an ion detector, wherein (a) at least two mixed time-of-flight spectra are acquired with an instrument parameter which is different in each case, the mixed time-of-flight spectra containing signals of fragment ions from more than one parent ion species, and the fragment ions being produced on the flight path before the reflector, (b) the mixed time-of-flight spectra are compared with each other in order to thus identify the signals of those fragment ions which originate from one parent ion species and one signal originating from the same fragment ion species is selected in each of several mixed time-of-flight spectra, and (c) the mass-to-charge ratios of the fragment ion and the associated parent ion are determined as parameters of the regression for T.sub.i=Sys(m/q.sub.m,M/q.sub.M,P.sub.i), where M and q.sub.m are the mass and the charge of the parent ion, respectively; m and q.sub.m the mass and the charge of the fragment ion, respectively; T.sub.i the times of flight of the signals of the fragment ion species determined from the mixed time-of-flight spectra; P.sub.ithe values of the instrument parameter which are used in the acquisition of the time-of-flight spectra; and Sys is the system function of the time-of-flight mass spectrometer which gives the time of flight of a fragment ion as a function of the instrument parameter, and the mass-to-charge ratio of the fragment ion and the associated parent ion.

    7. The method according to claim 6, wherein, after the reflector, the ions pass through an acceleration region or a second flight path, both being shorter than the flight path before the reflector, and are then detected in the ion detector.

    8. The method according claim 6, wherein the fragment ions in the flight path before the reflector are formed by the decomposition of metastable parent ions and/or are generated there from the parent ions in a fragmentation cell.

    9. The method according to claim 6, wherein the several parent ion species are selected from a larger number of ionic species.

    10. The method according to claim 6, wherein the ion source uses an ionization by matrix-assisted laser desorption (MALDI).

    11. A method for the mass spectrometric measurement of fragment ions with a time-of-flight mass spectrometer which contains an ion source, a flight path, a reflector and an ion detector, wherein (a) a mixed time-of-flight spectrum is acquired which contains signals of fragment ions of more than one parent ion species, and the fragment ions are produced on the flight path before the reflector, (b) two signals S.sub.1 and S.sub.2 in the isotopic pattern of a fragment ion are selected and their times of flight T.sub.1 and T.sub.2 are determined from the mixed time-of-flight spectrum, and (c) the mass-to-charge ratios of the fragment ion and the associated parent ion are calculated as the solution of the following equations:
    T.sub.1=Sys(m/q.sub.m,M/q.sub.M)
    T.sub.2=Sys((m+n.Math.Da)/q.sub.m,(M+n.Math.Da)/q.sub.M), where M and q.sub.M are the mass and the charge of the parent ion, respectively; m and q.sub.m the mass and the charge of the fragment ion, respectively; the selected isotopes have a mass difference of n dalton; and Sys is the system function of the time-of-flight mass spectrometer which gives the time of flight of a fragment ion as a function of the mass-to-charge ratio of the fragment ion and the associated parent ion.

    12. A method for the mass spectrometric measurement of fragment ions with a time-of-flight mass spectrometer wherein the total flight path consists of a field-free flight path and the reflector, which has a quadratically increasing decelerating potential, and thus the system function is given by the following equation: T ( M p , m p , d ) = c 1 .Math. M p 2 q M U B + c 2 .Math. m p , d 2 q m U C , where M.sub.p and q.sub.M are the mass and the charge of the parent ion, respectively; m.sub.p,d and q.sub.m the mass and the charge of the fragment ion, respectively; U.sub.B is the accelerating voltage of an acceleration region before the field-free flight path; and U.sub.C is the deceleration voltage at the reflector, and wherein: (a) at least two mixed time-of-flight spectra are acquired with an instrument parameter which is different in each case, the mixed time-of-flight spectra containing signals of fragment ions from more than one parent ion species, and the fragment ions being produced on the flight path before the reflector, and (b1) the mixed time-of-flight spectra are compared with each other in order to thus identify the signals of those fragment ions which originate from one parent ion species, and/or (b2) the times of flight of a fragment ion species in the mixed time-of-flight spectra are determined and used to calculate the mass-to-charge ratios of the fragment ion and the associated parent ion.

    13. The method according to claim 12, wherein two mixed time-of-flight spectra with different accelerating voltages are acquired and compared, where all signals in the second mixed time-of-flight spectrum which have the same time-of-flight delay ΔT as the first mixed time-of-flight spectrum are determined as originating from one parent ion species.

    14. The method according to claim 13, wherein, in addition, two time-of-flight spectra are acquired which contain only signals of parent ions and for which the accelerating voltages of the two mixed time-of-flight spectra are used, and the signals in the second mixed time-of-flight spectrum which have the same time-of-flight delay ΔT as the first mixed time-of-flight spectrum are assigned to the parent ion species which has the same time-of-flight delay ΔT in the time-of-flight spectra.

    15. The method according to claim 12, wherein two mixed time-of-flight spectra are acquired using different accelerating voltages, said spectra containing signals of the associated parent ions also; and in the second mixed time-of-flight spectrum, those signals are determined which have the same time-of-flight delay ΔT as the first mixed time-of-flight spectrum, the signal with the longest time of flight is assigned to the parent ion species, and the other signals are assigned to the fragment ions which originate from this parent ion species.

    16. The method according to claim 12, wherein the time-of-flight delays of the fragment ions which originate from different parent ion species are determined by means of a cross correlation between the first and the second mixed time-of-flight spectra.

    17. The method according to claim 12, wherein the ion source uses an ionization by matrix-assisted laser desorption (MALDI).

    18. The method according claim 12, wherein the fragment ions in the flight path before the reflector are formed by the decomposition of metastable parent ions and/or are generated there from the parent ions in a fragmentation cell.

    19. The method according to claim 12, wherein the reflector has a potential distribution of a Cassini ion trap for decoupled oscillations of the ions in the longitudinal direction and the lateral direction.

    20. The method according to claim 12, wherein the several parent ion species are selected from a larger number of ionic species.

    21. The method according to claim 12, wherein at least one mixed time-of-flight spectrum has additional signals of the parent ions, and the signals of those fragment ions which originate from one parent ion species are assigned to the corresponding parent ion species by comparing the mixed time-of-flight spectra.

    Description

    BRIEF DESCRIPTION OF THE DRAWINGS

    (1) FIG. 1 shows a schematic simplification of a time-of-flight mass spectrometer with a MALDI ion source and a Cassini reflector (20, 21, 22, 23), with which mixed time-of-flight spectra with several parent ion species and multiple fragment ions are acquired.

    (2) FIG. 2 shows a Cassini reflector of a different design with which the electric field of the Cassini reflector (20) can be generated.

    (3) FIGS. 3 and 4 show two artificial mixed time-of-flight spectra (1, 2), which contain signals from three parent ion species with masses of 800, 900 and 1000 daltons and their fragment ions.

    (4) FIGS. 5, 6 and 7 show superpositions of the mixed time-of-flight spectra (1, 2) from FIGS. 3 and 4, where the mixed time-of-flight spectrum (2) is shifted in each case to such an extent that the signals of one of the three parent ion species are opposite each other in both mixed time-of-flight spectra.

    (5) FIG. 8 shows a time-of-flight mass spectrometer with orthogonal acceleration of an ion beam (31) from an ion source (30) in a schematic simplification.

    DETAILED DESCRIPTION

    (6) The present invention provides a method for the fast acquisition of daughter ion mass spectra with low sample consumption, whereby a time-of-flight mass spectrometer is used to acquire mixed time-of-flight spectra from large numbers of parent and fragment ions in such a way that it is possible to use mathematical and geometrical relationships to determine which fragment ions originate from which parent ion species in each case. The time-of-flight mass spectrometer contains an ion source, a flight path, a reflector and an ion detector. The flight path is preferably field-free and the reflector preferably has a quadratically increasing reflection potential.

    (7) FIG. 1 shows a schematic simplification of a time-of-flight mass spectrometer which comprises a MALDI ion source (10, 11, 12), a field-free flight path (14), a Cassini reflector (20, 21, 22, 23), and an ion detector (26).

    (8) The sample plate (10) holds a multiplicity of samples, each with a mixture of substances, which are ionized by a UV light pulse (12) with the aid of matrix assisted laser desorption/ionization (MALDI). Bombarding the plate with the UV light pulse (12) allows parent ions to be produced whose internal energy is so high (called “metastable ions”) that at least some of them decompose into fragment ions on the field-free flight path after the accelerating electrodes (11). The ions can be accelerated in the MALDI ion source with a time delay so that ions of the same mass are time-focused at the inlet (15) in each case (focusing by “delayed extraction”). Some of the metastable parent ions of the different substances decompose along the field-free flight path (14); the fragment ions have approximately the same speed as the parent ions and thus enter the Cassini reflector (20, 21, 22, 23) at the same time. The parent and fragment ions pass through the Cassini reflector (20, 21, 22, 23) on different trajectories (16, 17, 18, 19) with different times of flight, however. The lower kinetic energy of the fragment ions (16, 17, 18) means that they do not penetrate as deeply into the Cassini reflector as the parent ions (19), and their lower mass means they pass through the Cassini reflector (20, 21, 22, 23) at a correspondingly faster speed. Both the fragment ions and the parent ions are spatially focused onto the exit aperture (24), however. Both parent ions and fragment ions are accelerated in an acceleration region (25) (diaphragm stack) in a very short time to a high energy, typically between 10 and 30 keV, and measured in the ion detector (26) as a mixed mass spectrum of parent and fragment ions.

    (9) Parent and fragment ions have the same time of flight up to the Cassini reflector (20, 21, 22, 23), but are temporally focused in the Cassini reflector (20, 21, 22, 23) with different times of flight so that the ion detector (26) measures a “mixed time-of-flight spectrum” which contains several species of parent ions as well as their fragment ions.

    (10) The Cassini reflector (20, 21, 22, 23) is shown in cross-section. The ion trajectories are located between the two inner electrodes (23), which are shown as broken lines because they are outside the plane of the drawing. The Cassini reflector here consists of an outer shell electrode (20), two inner electrodes (23) and two terminating equipotential plates (21, 22) as described in publication DE 10 2013 011 462 A1. The Cassini reflector (20, 21, 22, 23) has the potential distribution of half a Cassini ion trap, the increase in the potential being precisely quadratic in the axial direction. The equipotential plates (21, 22) have electrodes in the form of curved lines which follow the equipotential surfaces of the potential distribution of the Cassini ion trap at the location of the equipotential plate. The equipotential plate (22) has two apertures (15, 24) for the injection and ejection of ions, while the shape of the Cassini reflector (20, 21, 22, 23) and the positions of the injection and ejection apertures (15, 24) are preferably designed so that ions with the same mass pass through an odd, whole number of transverse half oscillations in the Cassini reflector (20, 21, 22, 23). In FIG. 1, the ions pass through 3/2 transverse oscillations in the Cassini reflector (20, 21, 22, 23). It is also possible to build Cassini reflectors which are even slimmer and which have greater penetration depths into the parabolic potential in the longitudinal direction. The ions must then execute 5/2, 7/2 or 9/2 transverse oscillations per half a longitudinal oscillation, which increases the acceptance for fragment ions of very different mass m.

    (11) The potential distribution Ψ(x, y, z) of a Cassini ion trap can, for example, have the form of a hyperlogarithmic field:

    (12) ψ ( x , y , z ) = ln [ ( x 2 + y 2 ) 2 - 2 .Math. b 2 .Math. ( x 2 - y 2 ) + b 4 ai 4 ] .Math. U l n C l n + [ - ( 1 - B ) .Math. x 2 - B - y 2 + z 2 ] - U qu ad C qu ad + U off
    The shape of the field can be changed by the constants ai, b and B. U.sub.ln, U.sub.quad and U.sub.off are potential voltages, C.sub.ln and C.sub.quad are constants. The inner surface of the outer housing (20) and the outer surfaces of the inner electrodes (23) are equipotential surfaces Ψ(x, y, z)=const. of this potential distribution. In cross-section, the equipotential lines form approximate Cassini ovals about the inner electrodes here; two inner electrodes (23) result in Cassini ovals of the second order; n inner electrodes result in Cassini ovals of the nth order. For an even number of inner electrodes, there are embodiments where the ions can oscillate transversely near the center plane between at least one pair of inner electrodes. Form parameters can be used to set any chosen ratio between the longitudinal oscillation period and the transverse oscillation period.

    (13) A Cassini reflector is most preferable here because it has a quadratically increasing decelerating potential (reflection potential) and also spatially focuses the ions in both lateral directions. Additionally, fragment ions which are formed in the reflector by decomposition are almost completely filtered out. In principle, however, any reflector with a quadratically increasing potential can be used to obtain the preferred simple system function in accordance with Equation (5). However, it should furthermore be noted here that a time-of-flight mass spectrometer with a Mamyrin reflector can also be used to acquire mixed time-of-flight spectra according to the invention, although the system function is different from Equation (5) when a reflector without quadratic decelerating potential is used, and solving the corresponding system of equations can be more complicated.

    (14) The outer housing (20) of the Cassini reflector in FIG. 1 is quite difficult to manufacture. Moreover, the interior of the largely closed Cassini reflector is not easy to evacuate. FIG. 2 shows a Cassini reflector of a different design but with the same electric field: The outer housing (20) in FIG. 1 is replaced here by a stack of identical apertured diaphragms (122). The Cassini reflector is shown here in three dimensions; it is cut open in the reflection direction and only half the detector is shown. The apertured diaphragms have inner openings in the form of a Cassini oval. In order to maintain the electric field of a Cassini ion trap, the apertured diaphragms (122) and the electrodes of the equipotential plate (120) are supplied with suitable potentials which produce the quadratically increasing field. The equipotential plates (120) and (121) correspond to those in FIG. 1. Fragment ions of different masses m move on trajectories (124) which extend into the reflector to different depths. The parent ions move on a trajectory (125) which extends deeper into the reflector. This embodiment has several advantages: The reflector is easier to evacuate; the overall size is smaller, the manufacture is simpler and less expensive.

    (15) FIGS. 3 and 4 show two mixed time-of-flight spectra (1, 2), as they are acquired with a time-of-flight mass spectrometer from FIG. 1 at two different accelerating voltages U.sub.1 and U.sub.2 in the MALDI ion source (10, 11, 12). In the two mixed time-of-flight spectra (1, 2), the parent ions are labeled by arrows and have a mass of 800, 900 and 1000 daltons. For each of these parent ion species there exist three fragment ions with masses of 100, 200 and 300 daltons, which are each plotted with the intensity of the associated parent ion species. The abscissa indicates the times of flight.

    (16) The parent ions and their associated fragment ions have the same time of flight on the straight field-free flight path (14), but different times of flight in the Cassini reflector (20, 21, 22, 23). If the two mixed time-of-flight spectra are acquired with two different accelerating voltages U.sub.1 and U.sub.2, then for fragment ions, a total time of flight t.sub.1 results in the mixed time-of-flight spectrum 1 and a total time of flight t.sub.2 in the mixed time-of-flight spectrum 2:

    (17) t 1 ( M p , m d ) = c 1 .Math. M p 2 q M U 1 + c 2 .Math. m d 2 q m U C t 2 ( M p , m d ) = c 1 .Math. M p 2 q M U 2 + c 2 .Math. m d 2 q m U C .
    where M.sub.p is the mass of the parent ions (with p=1, 2, . . . ), m.sub.d the mass of an associated fragment ion (with d=1, 2, . . . ), q.sub.M and q.sub.m their charges, U.sub.1 the accelerating voltage for the parent ions in the MALDI ion source (10, 11, 12), and U.sub.C the decelerating voltage at the Cassini reflector (20, 21, 22, 23). The two constants c.sub.1 and c.sub.2 can be determined by calibrating with known substances. For MALDI ions, the charges q.sub.M and q.sub.m are usually the charges of individual protons.

    (18) If the times of flight t.sub.1 and t.sub.2 for one fragment ion species in the two mixed time-of-flight spectra (1, 2) are known, the mass of the associated parent ion M.sub.p can be determined:

    (19) M p q M = t 1 - t 2 c 1 .Math. 2 .Math. U 1 .Math. U 2 U 2 - U 1
    and from this, the mass of the fragment ion m.sub.d can be determined:

    (20) m d q m { t 1 c 2 - c 1 c 2 .Math. M 2 q M U 1 } 2 .Math. 2 .Math. U C .

    (21) If the ions pass through the Cassini reflector in FIG. 1 with relatively low energy, for example with only 300 electronvolts, the long time of flight results in a relatively high resolution, which means that the isotopic lines can be resolved for the fragment ions also, despite the decomposition energy which they received in statistically distributed directions during the decomposition. If, for example, the .sup.13C signal and the .sup.12C signal of a fragment ion species are resolved in an individual mixed time-of-flight spectrum which is acquired with a time-of-flight mass spectrometer according to FIG. 1, the two equations below with the unknown masses of the parent ion and the fragment ion are obtained:

    (22) t 1 ( M p , m p , d ) = c 1 .Math. M p 2 q M U B + c 2 .Math. m p , d 2 q m U C t 2 ( M p + 1 , m p , d + 1 ) = c 1 .Math. M p + 1 2 q M U B + c 2 .Math. m p , d + 1 2 q m U C
    where m.sub.p,d and q.sub.m are the mass and the charge of the daughter ion, respectively; M.sub.p and q.sub.M the mass and the charge of the associated parent ion, respectively; U.sub.B the accelerating voltage for the parent ions in the MALDI ion source, and U.sub.C the decelerating voltage at the reflector. The two constants c.sub.1 and c.sub.2 can be determined by calibrating with a known substance. The two unknown masses are obtained as the solution of the system of equations. This method according to the invention requires a good time-of-flight resolution, but it is not necessary to acquire a second mixed time-of-flight spectrum with a different accelerating voltage.

    (23) The two mixed time-of-flight spectra (1) and (2) can also be compared with each other in order to identify the signals of those fragment ions which originate from one parent ion species. The comparison can be a geometric one or be undertaken with the aid of a cross correlation, for example. In the two mixed time-of-flight spectra (1, 2), the parent ions as well as all the associated fragment ions are delayed by the same value of the time of flight t.sub.1−t.sub.2, since the times of flight in the Cassini reflector (20, 21, 22, 23) remain the same for the parent ions and their fragment ions for the two accelerating voltages and only the times of flight of the straight flight path (14) are different. To now be able to easily recognize which fragment ions originate from which parent ions, three superpositions of the mixed time-of-flight spectrum (1) from FIG. 3 are drawn in FIGS. 5, 6 and 7 with the respective delayed mixed time-of-flight spectra (2) from FIG. 4. The mixed time-of-flight spectrum from FIG. 4 is shifted along the time-of-flight axis until either the parent ions with a mass of 800 daltons or those with a mass of 900 daltons, or those with a mass of 1000 daltons are positioned opposite each other.

    (24) In FIG. 5, the parent ions with a mass of 800 daltons in the mixed time-of-flight spectra (1) and (2a) coincide; it is also easy to recognize here that, at the same time, all the fragment ions of these parent ions coincide with each other (dashed arrows) and so are easily discernible as associated fragment ions. In the same way, it is also possible to identify the fragment ions of the parent ions with masses of 900 and 1000 daltons when the mixed time-of-flight spectra (1) and (2b) or (1) and (2c) in FIGS. 6 and 7 are compared.

    (25) The three delay times which are used to shift the mixed time-of-flight spectra (2a, 2b, 2c) in FIGS. 5 to 7 can also be determined with the aid of a cross correlation between the mixed time-of-flight spectra (1) and (2), the cross correlation having a local maximum at each of the three delay times. A pure fragment ion spectrum is obtained by selecting those signals from a mixed time-of-flight spectrum which are all delayed by one of the correspondingly determined times.

    (26) It is advantageous to first acquire a conventional time-of-flight spectrum of the parent ions without fragment ions by using a low laser energy. It contains all the ions of masses M.sub.1, M.sub.2, M.sub.2 etc. which are possible parent ions. If two time-of-flight spectra of the parent ions are acquired for the two accelerating voltages that are also used for the two mixed time-of-flight spectra (1) and (2), then the parent ions in the two mixed time-of-flight spectra (1) and (2) can be identified. The time delays which are characteristic of the respective parent ions and their fragment ions can also be determined from a cross correlation of the two time-of-flight spectra of the parent ions. If the time-of-flight spectrum of the parent ions contains too many parent ions, each of which can decompose into fragment ions, for example over fifty possible parent ions, a conventional parent ion separator can be used to select a mass range of parent ions, for example the mass range between 1000 and 1500 daltons, in order to limit the number of parent ions, for example to only fifteen parent ions per mixed time-of-flight spectrum. All of the fifty or so daughter ion mass spectra can be determined in this way using around four to five mixed time-of-flight spectra. The sample consumption is therefore reduced by a factor of ten compared to the methods previously used.

    (27) FIG. 8 is a schematic simplification showing a time-of-flight mass spectrometer with a pulser (32) for the orthogonal acceleration of an ion beam (31) from an ion source (30). Ion source (30) and ion beam (31) are drawn in the projection plane here for clarity; they should be positioned at right angles to the projection plane, however, in order to generate a band-shaped ion beam (14) which can enter the Cassini reflector (20, 21, 22, 23) through a slit (15) extending perpendicular to the projection plane. The parent ions of the pulsed-out beam pass through a fragmentation cell (33) and decompose either directly at this location or on the field-free flight path (14) into fragment ions of the mixed time-of-flight spectra. The fragmentation in the fragmentation cell (33) can be brought about by photons of sufficient energy or by collisions in the gas-filled fragmentation cell (33), for example.

    (28) The person skilled in the art will find it easy to develop further interesting embodiments based on the devices for the reflection of ions according to the invention. These shall also be covered by this patent protection application to the extent that they derive from this invention.