Methods and compositions for treating inflammatory or autoimmune diseases or conditions using serotonin receptor activators
11208475 · 2021-12-28
Assignee
Inventors
- Avak Kahvejian (Lexington, MA)
- Jordi Mata-Fink (Baltimore, MD, US)
- Jonathan Barry Hurov (Bedford, MA, US)
- Chengyi Jenny SHU (Cambridge, MA, US)
- George Huck Neubauer (Malden, MA, US)
- Manuel Andreas FANKHAUSER (Bern, CH)
- Julian Alexander STANLEY (Oregon City, OR, US)
Cpc classification
A61K31/495
HUMAN NECESSITIES
A61K45/06
HUMAN NECESSITIES
A61K31/495
HUMAN NECESSITIES
A61K31/137
HUMAN NECESSITIES
A61K9/0019
HUMAN NECESSITIES
C07K16/286
CHEMISTRY; METALLURGY
A61K2300/00
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A61K31/506
HUMAN NECESSITIES
A61P37/06
HUMAN NECESSITIES
A61K31/4045
HUMAN NECESSITIES
International classification
C07K16/24
CHEMISTRY; METALLURGY
A61K31/137
HUMAN NECESSITIES
A61P37/06
HUMAN NECESSITIES
A61K9/00
HUMAN NECESSITIES
A61K31/506
HUMAN NECESSITIES
Abstract
The present invention provides methods for treating inflammatory or autoimmune diseases or conditions using serotonin receptor activators, such as serotonin receptor activating antibodies, among others. The invention also features compositions containing serotonin receptor activators, methods of diagnosing patients with a serotonin receptor-associated inflammatory or autoimmune disease or condition, and methods of predicting the response of an inflammatory or autoimmune disease or condition in a subject to treatment with serotonin receptor activators.
Claims
1. A method of reducing IL-8 expression in a subject in need thereof, comprising administering to the subject a serotonin receptor agonist in an amount effective to reduce IL-8 expression in the subject by at least 30%, relative to a control, wherein the method further comprises measuring an IL-8 expression level in the subject.
2. The method of claim 1, wherein the subject has psoriasis.
3. The method of claim 1, wherein the subject has rheumatoid arthritis.
4. The method of claim 1, wherein the method further comprises administering to the subject a second therapeutic agent.
5. The method of claim 4, wherein the second therapeutic agent is a disease-modifying anti-rheumatic drug (DMARD), a biologic response modifier, a corticosteroid, a nonsteroidal anti-inflammatory medication (NSAID), prednisone, prednisolone, methylprednisolone, methotrexate, hydroxycholorquine, sulfasalazine, leflunomide, cyclophosphamide, azathioprine, tofacitinib, adalimumab, abatacept, anakinra, kineret, certolizumab, etanercept, golimumab, infliximab, rituximab tocilizumab, an anti-viral compound, a nucleoside-analog reverse transcriptase inhibitor (NRTI), a non-nucleoside reverse transcriptase inhibitor (NNRTI), an anti-bacterial compound, an anti-fungal compound, an antiparasitic compound, 6-mercaptopurine, 6-thioguanine, alemtuzumab, an aminosalicylate, an antibiotic, an anti-histamine, an anti-TNFα agent, azathioprine, belimumab, beta interferon, a calcineurin inhibitor, certolizumab, cromolyn, cyclosporin A, cyclosporine, dimethyl fumarate, fingolimod, a fumaric acid ester, glatiramer acetate, hydroxyurea, IFNγ, IL-11, leflunomide, leukotriene receptor antagonist, long-acting beta2 agonist, mitoxantrone, mycophenolate mofetil, natalizumab, ocrelizumab, pimecrolimus, a probiotic, a retinoid, salicylic acid, short-acting beta2 agonist, sulfasalazine, tacrolimus, teriflunomide, theophylline, ustekinumab, vedolizumab, a serotonin receptor function activator, a neurotransmission modulator, a neuronal growth factor modulator, or a combination thereof.
6. The method of claim 1, wherein the serotonin receptor agonist is administered to the subject locally.
7. The method of claim 1, wherein the serotonin receptor agonist is administered to the subject systemically.
8. The method of claim 1, wherein the serotonin receptor agonist is LP44, BW 723C86, or MK-212.
9. The method of claim 8, wherein the serotonin receptor agonist is MK-212.
10. The method of claim 1, wherein the amount of the serotonin receptor agonist is effective to reduce IL-8 secretion by macrophages by at least 30%, relative to a control.
Description
DETAILED DESCRIPTION
(1) Described herein are compositions and methods for the treatment of an inflammatory or autoimmune disease or condition in a subject (e.g., a mammalian subject, such as a human) by administering serotonin receptor activators. Serotonin receptor activators include activators specific to a serotonin receptor (e.g., serotonin receptor-specific activating antibodies) and non-specific activators that could potentially affect other proteins due to their having shared binding partners or signaling pathways with serotonin receptors. These methods and compositions provide new mechanistic approaches for treating inflammatory or autoimmune diseases or conditions.
(2) Serotonin Receptors
(3) Serotonin receptors are a family of G protein-coupled receptor and ligand-gated ion channels found in the central and peripheral nervous systems. The serotonin receptors may be activated by the neurotransmitter serotonin, which acts as their natural ligand. Serotonin receptors modulate the release of many neurotransmitters, including glutamate, GABA, dopamine, epinephrine/norepinephrine, and acetylcholine, as well as many hormones, including oxytocin, prolactin, vasopressin, cortisol, corticotropin, and substance P, among others. They also influence various biological and neurological processes such as aggression, anxiety, appetite, cognition, learning, memory, mood, nausea, sleep, and thermoregulation
(4) The present invention relates to the surprising discovery that serotonin receptors (especially HTR1F, HTR2B, HTR2C, HRT3A, HTR6, and HTR7) are highly expressed on macrophages, dendritic cells, and T cells. The addition of serotonin receptor agonists to cultured M2 macrophages reduced macrophage production of the pro-inflammatory cytokine IL-8. IL8 is the primary cytokine for driving the recruitment and activation of neutrophils. These findings indicate that activation of serotonin receptors reduces the production of pro-inflammatory cytokines and may protect the host from excessive, aberrant immune responses. Through this mechanism, activation of serotonin receptors can reduce inflammation, induce tolerance, and be used as a therapeutic strategy for treating inflammatory and autoimmune diseases or conditions, particularly diseases or conditions driven by macrophages in barrier tissue (e.g., allergy, asthma, inflammatory bowel disease (IBD), Crohn's, Ulcerative Colitis, dermatitis, fibrosis, and wound-healing) and diseases driven by neutrophils (e.g. systemic lupus erythematosus, small vessel vasculitis and rheumatoid arthritis).
(5) Serotonin Receptor Activators
(6) Serotonin receptor activators described herein can activate or increase serotonin receptor function or signaling in order to treat inflammatory or autoimmune diseases or conditions. Serotonin receptor activators can be grouped into categories based on their mechanism of action and their effect on serotonin receptors: 1) serotonin receptor-specific activators (e.g., activators that only activate the function or signaling of a single serotonin receptor, such as serotonin receptor-specific activating antibodies or serotonin receptor-selective small molecule agonists), 2) serotonin receptor function activators (e.g., activators that increase the activity or more than one serotonin receptor, such as non-selective serotonin receptor small molecule activators), and 3) serotonin receptor signaling activators (e.g., activators that activate downstream signaling pathways or intracellular events that occur after activation of serotonin receptors).
(7) Serotonin Receptor-Specific Activators
(8) In some embodiments, the serotonin receptor activator is a serotonin receptor-specific activator. Serotonin receptor-specific activators selectively increase or activate the function, expression, activation, or signaling of a single serotonin receptor (e.g., a serotonin receptor in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, or HTR7) without directly affecting other serotonin receptors. Serotonin receptor-specific activators include serotonin receptor-specific activating antibodies or antigen binding fragments thereof and serotonin receptor-selective small molecule activators. Serotonin receptor-specific activators can increase serotonin receptor function, expression, or signaling by 5% or more (e.g., 5%, 10%, 15%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, or more).
(9) In some embodiments, the serotonin receptor activating antibody is a serotonin receptor-specific activating antibody or an antigen binding fragment thereof that binds to a serotonin receptor and activates or increases serotonin receptor function. Serotonin receptor-specific activating antibodies include antibodies having one or more of the following functional properties: has agonistic activity (e.g., activates a serotonin receptor); or binds to one or more extracellular regions of a serotonin receptor. In some embodiments, the serotonin receptor-specific activating antibody is a HTR1F-specific activating antibody and binds to an extracellular domain of HTR1F (amino acids 1-29, 84-97, 162-178, and/or 312-329) or to amino acids 99-108 and/or 306-310 of HTR1F. In some embodiments, the serotonin receptor-specific activating antibody is a HTR2B-specific activating antibody and binds to one or more of residues D135, V136, S139, T140, K211, F217, W337, F340, N344, or Y370 of HTR2B. In some embodiments, the serotonin receptor-specific activating antibody is a HTR2C-specific activating antibody and binds to one or more of residues P159, S456, or V458 of HTR2C. In some embodiments, the serotonin receptor-specific activating antibody is a HTR3A-specific activating antibody and binds to an extracellular domain of HTR3A (amino acids 24-241, 293-302, and/or 476-478) or to amino acids 178, 432, 436, and/or 440 of HTR3A, or to the expansion of amino acid 306(G) in the 5HTR3A-AL isoform. In some embodiments, the serotonin receptor-specific activating antibody is a HTR6-specific activating antibody and binds to an extracellular domain of HTR6 (amino acids 1-34, 86-100, 168-184, and/or 291-295). In some embodiments, the serotonin receptor-specific activating antibody is a HTR7-specific activating antibody and binds to one or more glycosylation sites (e.g., glycosylation sites 5 or 66) or a lipidation site (e.g., lipidation site 401) of HTR7. Antibodies having one or more of these functional properties are routinely screened and selected once the desired functional property is identified herein (e.g., by screening of phage display or other antibody libraries).
(10) In some embodiments, the serotonin receptor-specific activator is a small molecule activator (e.g., agonist) that is selective for a specific serotonin receptor (e.g., a serotonin receptor listed in Table 1, e.g., an HTR1F-selective activator, an HTR2B-selective activator, an HTR2C-selective activator, an HTR3A-selective activator, an HTR6-selective activator, or an HTR7-selective activator). Serotonin receptor-specific small molecule activators for use in the methods and compositions described herein are included in Table 2.
(11) Serotonin Receptor Function Activators
(12) In some embodiments, the serotonin receptor activator is a serotonin receptor function activator. Serotonin receptor function activators activate or increase serotonin receptor function by increasing serotonin receptor expression or activation. Serotonin receptor function activators include serotonin receptor-specific activators that activate or increase serotonin receptor function or expression (e.g., serotonin receptor-specific activating antibodies or antigen binding fragments thereof or small molecule serotonin receptor-selective activators), or serotonin receptor activating antibodies or antigen binding fragments thereof or small molecule serotonin receptor activators that bind to or activate more than one serotonin receptor
(13) In some embodiments, the serotonin receptor activating antibodies bind to or increase the activity of more than one serotonin receptor (e.g., at least two or more serotonin receptors listed in Table 1) and have one or more of the following functional properties: agonizes the serotonin receptors; or binds to one or more extracellular regions of the serotonin receptors. Antibodies or antibody-like molecules having one or more of these functional properties are routinely screened and selected once the desired functional property is identified herein (e.g., by screening of phage display or other antibody libraries).
(14) In some embodiments, the serotonin receptor function activator is a non-selective serotonin receptor activator (e.g., an agonist that activates two or more serotonin receptors listed in Table 1). Non-selective serotonin receptor activators for use in the methods and compositions described herein are included in Table 2.
(15) In some embodiments, the serotonin receptor function activator activates a serotonin receptor (e.g., multiple serotonin receptors listed in Table 1) by inhibiting or reducing serotonin reuptake or increasing serotonin release. Agents that can be used to inhibit serotonin reuptake include serotonin reuptake inhibitors, serotonin-norepinephrine-dopamine reuptake inhibitors (SNDRIs), and serotonin-norepinephrine reuptake inhibitors (SNRIs). Agents that can be used to increase serotonin release include serotonin releasing agents. Serotonin reuptake inhibitors, SNRIs, SNDRIs, and serotonin releasing agents for use in the methods and compositions described herein are provided in Table 2.
(16) Serotonin Receptor Signaling Activators
(17) In some embodiments, the serotonin receptor activator is a serotonin receptor signaling activator. Serotonin receptor signaling activators include agents that activate or increase signaling that occurs downstream of serotonin receptor activation, such as small molecule activators of intracellular signaling cascades (e.g., activators of G protein signaling, beta arrestin signaling, the phosphatidylinositol-calcium second messenger system, ERK1, ERK2, or MAP kinase). Exemplary small molecule receptor signaling activators for use in the methods and compositions described herein are provided in Table 3.
(18) Neurotransmission Blockers
(19) In some embodiments, the serotonin receptor activator is a neurotransmission blocker. Neurotransmission blockers decrease or block neurotransmission by decreasing neurotransmitter synthesis or release, increasing neurotransmitter reuptake or degradation, decreasing neurotransmitter receptor activity, and/or disrupting the pre- or post-synaptic machinery. In some embodiments, the neurotransmission blocker is a bacterial neurotoxin that stimulates the release of serotonin or neuropeptides. In some embodiments, the neurotoxin is a neurotoxin listed in Table 11. In some embodiments, the neurotoxin is cholera toxin or Clostridium difficile toxin A.
(20) TABLE-US-00001 TABLE 1 SEROTONIN RECEPTORS Accession Number Receptor (Entrez Gene ID) HTR1A 3350 HTR1B 3351 HTR1D 3352 HTR1E 3354 HTR1F 3355 HTR2A 3356 HTR2B 3357 HTR2C 3358 HTR3A 3359 HTR3B 9177 HTR3C 170572 HTR3D 200909 HTR3E 285242 HTR4 3360 HTR5A 3361 HRT5BP 645694 HTR6 3362 HTR7 3365
(21) TABLE-US-00002 TABLE 2 SMALL MOLECULE SEROTONIN RECEPTOR ACTIVATORS Receptor Activators HTR1A agonists azapirones, such as alnespirone, binosperone, buspirone, enilospirone, etapirone, geprione, ipsaprione, revospirone, zalospirone, perospirone, tiosperone, umespirone, and tandospirone; 8-OH-DPAT, befiradol, F-15,599, lesopitron, MKC-242, LY-283,284, osemozotan, repinotan, U-92,016-A, RU- 24969, 2C-B, 2C-E, 2C-T-2, aripiprazole, asenapine, bacoside, befiradol, brexpiprazole, bufotenin, cannabidiol, fibanserin HTR1B agonists triptans, such as sumatriptan, rizatriptan, eletriptan, donitripatn, almotriptan, frovatriptan, avitriptan, zolmitriptan, and naratriptan; ergotamine, 5- carboxamidotryptamine, CGS-12066A, CP-93,129, CP-94,253, CP-122,288, CP-135,807, RU-24969, vortioxetine, ziprasidone, asenapine HTR1D agonists triptans, such as sumatriptan, rizatriptan, and naratriptan; ergotamine, 5- (nonyloxy)tryptaime, 5-(t-butyl)-N-methyltryptamine, CP-286,601, PNU- 109,291, PNU-142,633, GR-46611, L-694,247, L-772,405, CP-122,288, and CP-135,807 HTR1E agonists BRL-54443, eletriptan HTR1F agonists Almotriptan Malate, Eletriptan Hydrobromide, Lasmiditan, CHEMBL3617549, CHEMBL3617550, CHEMBL3617557, CHEMBL177238, CHEMBL177258, CHEMBL369705, CHEMBL173949, CHEMBL431041, CHEMBL104720, CHEMBL321080, CHEMBL105261, CHEMBL105955, CHEMBL102250, CHEMBL104753, CHEMBL105958, CHEMBL105722, CHEMBL105091, CHEMBL420475, CHEMBL186951, CHEMBL186662, CHEMBL187581, CHEMBL187308, CHEMBL339980, CHEMBL128, LY-334,370, LY-334,370, 5-n-butyryloxy-DMT, BRL-54443, eletriptan, LY-344,864, naratriptan, lasmiditan HTR2A agonists 251-NBOH, O-4310, OSU-6162, 25CN-NBOH, 25I-NBOH, 25I-NBOMe, (R)- DOI, TCB-2, mexamine, O-4310, PHA-57378, OSU-6162, 25CN-NBOH, juncosamine, efavirenz, mefloquine, lisuride, 2C-B HTR2B agonists Methylergonovine Maleate, CHEMBL2337490, CHEMBL2337493, CHEMBL2337492, CHEMBL494947, CHEMBL2337494, CHEMBL2337106, CHEMBL595195, CHEMBL2337503, CHEMBL2337488, CHEMBL609306, CHEMBL595194, CHEMBL2337500, CHEMBL3416053, CHEMBL2337496, CHEMBL594717, CHEMBL2337105, CHEMBL3416060, CHEMBL595553, CHEMBL3416039, CHEMBL593545, CHEMBL3416056, CHEMBL3416061, CHEMBL3416047, CHEMBL2337499, CHEMBL594469, CHEMBL3416040, CHEMBL1093699, CHEMBL3416046, CHEMBL3416049, CHEMBL27, CHEMBL3736433, CHEMBL3736156, CHEMBL3416041, CHEMBL3416042, fenfluramine, pergolide, cabergoline, mefloquine, BW-723086, Ro60-0175, VER-3323, 6-APB, guanfacine, norfenfluramine, 5-MeO-DMT, DMT, mCPP, aminorex, chlorphentermine, MEM, MDA, LSD, psilocin, MDMA HTR2C agonists CHEMBL1091452, CHEMBL1092029, CHEMBL1092167, CHEMBL1093699, CHEMBL1628670, CHEMBL170319, CHEMBL170854, CHEMBL171774, CHEMBL172159, CHEMBL1901802, CHEMBL2011548, CHEMBL2011553, CHEMBL2011556, CHEMBL2011564, CHEMBL2011565, CHEMBL2011566, CHEMBL2011567, CHEMBL2011569, CHEMBL2011570, CHEMBL203013, CHEMBL208936, CHEMBL209106, CHEMBL209155, CHEMBL209254, CHEMBL209714, CHEMBL210215, CHEMBL210484, CHEMBL210802, CHEMBL2110670, CHEMBL211153, CHEMBL2260565, CHEMBL2260567, CHEMBL2260568, CHEMBL2260569, CHEMBL2337102, CHEMBL2337103, CHEMBL2337104, CHEMBL2337105, CHEMBL2337106, CHEMBL2337488, CHEMBL2337489, CHEMBL2337490, CHEMBL2337491, CHEMBL2337492, CHEMBL2337493, CHEMBL2337494, CHEMBL2337495, CHEMBL2337496, CHEMBL2337497, CHEMBL2337498, CHEMBL2337499, CHEMBL2337500, CHEMBL2337501, CHEMBL2337502, CHEMBL2337503, CHEMBL2337504, CHEMBL2391541, CHEMBL2396668, CHEMBL2397877, CHEMBL2397879, CHEMBL2397884, CHEMBL2397895, CHEMBL2397896, CHEMBL2397901, CHEMBL2397902, CHEMBL2397905, CHEMBL2397906, CHEMBL2397908, CHEMBL2397915, CHEMBL303516, CHEMBL30713, CHEMBL309760, CHEMBL3416032, CHEMBL3416033, CHEMBL3416034, CHEMBL3416035, CHEMBL3416036, CHEMBL3416037, CHEMBL3416038, CHEMBL3416039, CHEMBL3416040, CHEMBL3416041, CHEMBL3416042, CHEMBL3416043, CHEMBL3416044, CHEMBL3416045, CHEMBL3416046, CHEMBL3416047, CHEMBL3416048, CHEMBL3416049, CHEMBL3416051, CHEMBL3416053, CHEMBL3416054, CHEMBL3416055, CHEMBL3416056, CHEMBL3416057, CHEMBL3416058, CHEMBL3416059, CHEMBL3416060, CHEMBL3416061, CHEMBL3416062, CHEMBL3416063, CHEMBL3416064, CHEMBL3416065, CHEMBL3416066, CHEMBL3416067, CHEMBL353998, CHEMBL355474, CHEMBL3589578, CHEMBL3589582, CHEMBL3589595, CHEMBL360328, CHEMBL379819, CHEMBL379983, CHEMBL39, CHEMBL407909, CHEMBL425423, CHEMBL425777, CHEMBL438611, CHEMBL451543, CHEMBL478, CHEMBL494947, CHEMBL593545, CHEMBL593547, CHEMBL594469, CHEMBL594477, CHEMBL594489, CHEMBL594717, CHEMBL594718, CHEMBL595194, CHEMBL595195, CHEMBL595196, CHEMBL595553, CHEMBL595554, CHEMBL595555, CHEMBL595645, CHEMBL595646, CHEMBL596108, CHEMBL596327, CHEMBL596328, CHEMBL608135, CHEMBL609306, CHEMBL609595, CHEMBL6616, CHEMBL76301, CHEMBL76307, CHEMBL76474, CHEMBL76781, CHEMBL77880, CHEMBL80246, CHEMBL80366, CHEMBL80482, CHEMBL80731, CHEMBL80862, lorcaserin, lisuride, A-372,159, AL-38022A, CP-809,101, fenfluramine, mesulergine, MK-212, naphthyllisopropylamine, norfenfluramine, ORG-12,962, ORG-37,684, oxaflozane, PNU-22395, PNU- 181731, lysergamides, phenethylamines, piperazines, tryptamines, Ro60- 0175, vabicaserin, WAY-629, WAY-161,503, WAY-163,909, and YM-348 HTR3A agonists CHEMBL53929, CHEMBL11608, CHEMBL429317, CHEMBL402757, CHEMBL254352, CHEMBL257155, CHEMBL402540, CHEMBL3769507, CHEMBL2204360, CHEMBL3261479, CHEMBL3261482, CHEMBL3261481, CHEMBL3261485, CH EMBL3261486, CH EMBL3261483, CHEMBL1643882, CHEMBL1643881, CHEMBL1643884, CHEMBL46, CHEMBL1110, CHEMBL289469, CHEMBL1189679, CHEMBL1110, CHEMBL289469, CHEMBL1643880, CH EMBL1643882, CH EMBL1643882, CH EMBL1643884, CHEMBL46, CHEMBL1110, CHEMBL1189679, CHEMBL1643881, CHEMBL1643895, CHEMBL289469, CHEMBL1643880, 2-methyl-5-HT, alpha-methyltryptamine, bufotenin, chlorophenylbiguanide, ethanol, ibogaine, phenylbiguanide, quipazine, RS-56812, SR-57227, varenicline, YM-31636 HTR4 agonists cisapride, tegaserod, prucalopride, BIMU-8, CJ-033,466, ML-10302, mosapride, renzapride, RS-67506, RS-67333, SL65.1055, zacopride, metoclopramide, sulpride HTR6 agonists CHEMBL1950351, CHEMBL179408, CHEMBL368209, CHEMBL180425, CHEMBL179926, CHEMBL369759, CHEMBL175471, CHEMBL3633184, CHEMBL1950776, CHEMBL1950775, CHEMBL1950760, CHEMBL1950774, CHEMBL1950773, CHEMBL1950776, CHEMBL1950760, CHEMBL1950750, CHEMBL1950775, CHEMBL1950773, CHEMBL1950774, CHEMBL1950750, CHEMBL1950762, CHEMBL2376482, CHEMBL2376483, CHEMBL520795, CHEMBL520129, CHEMBL482562, CHEMBL566410, CHEMBL566219, CHEMBL578411, CHEMBL566218, CHEMBL566213, CHEMBL571762, CHEMBL3289978, CHEMBL3290016, CHEMBL3289995, CHEMBL3289954, CHEMBL3290014, CHEMBL3290006, CHEMBL3289991, CHEMBL3290017, CHEMBL3290008, CHEMBL3290012, CHEMBL3289993, CHEMBL3290003, CHEMBL506736, CHEMBL506736, CHEMBL506736, CHEMBL579981, CHEMBL176292, CHEMBL362628, CHEMBL179407, CHEMBL175884, CHEMBL368390, CHEMBL427134, CHEMBL177124, CHEMBL176028, CHEMBL2376487, CHEMBL2376485, CHEMBL26379, CHEMBL1550957, CHEMBL2376484, CHEMBL2376486, CHEMBL2413988, EMDT, WAY- 181,187, WAY-208,466, N-(inden-5-yl)imidazothiazole-5-sulfonamide, E- 6837, E-6801, and EMD-386,088 HTR7 agonists CHEMBL39, CHEMBL3321798, CHEMBL3321794, CHEMBL445334, CHEMBL18840, CHEMBL222755, CHEMBL389718, CHEMBL225284, CHEMBL371300, CHEMBL224820, AS-19, 5-CT, 5-MeOT, 8-OH-DAPT, aripiprazole, E-55888, E-57431, LP-12, LP-44, MSD-5a, RA-7, and N,N- Dimethyltryptamine Serotonin reuptake Alaproclate, cericlamine, citalopram, dapoxetine, escitalopram, femoxetine, inhibitors fluoxetine, fluvoxamine, ifoxetine, indalpine, omiloxetine, panuramine, paroxetine, pirandamine, RTI-353, sertraline, zimelidine, desmethylcitalopram, didesmethylcitalopram, seproxetine ((S)-norfluoxetine), desvenlafaxine, cianopramine, litoxetine, lubazodone, SB-649,915, trazodone, vilazodone, vortioxetine, dextromethorphan, dextropropoxyphene, dimenhydrinate, diphenhydramine, mepyramine (pyrilamine), mifepristone, delucemine, mesembrenone, mesembrine, roxindole, duloxetine, levomilnacipran, milnacipran, dapoxetine, sibutramine, chlorpheniramine, dextropmethorphan, methadone Serotonin- Mazindol, nefazodone, sibutramine, venlafaxine, esketamine, duloxetine, norepinephrine- ketamine, phencyclidine, tripelennamine, mepiprazole, amitifadine, AN788, dopamine reuptake ansofaxine, centanafadine, atomoxetine, desvenlafaxine, milnacipran, inhibitors (SNDRIs) levomilnacipran, dasotraline, Lu AA34893, Lu AA37096, NS-2360, and serotonin- tedatioxetine, tesofensine, bicifadine, BMS-866,949, brasofensine, norepinephrine diclofensine, DOV-216,303, EXP-561, liafensine, NS-2359, RG-7166, SEP- reuptake inhibitors 227,162, SEP-228,425, SEP-228,432, naphyrone, 3,3- (SNRIs) Diphenylcyclobutanamine, 3,4-Dichlorotametraline, D-161, desmethylsertraline, DMNPC, DOV-102,677, fezolamine, GSK1360707F, indatraline, JNJ-7925476, JZ-IV-10, JZAD-IV-22, LR-5182, methylnaphthidate, MI-4, PRC200-SS, PRC050, PRC025, SKF-83,959, TP1, phenyltropanes (e.g., WF-23, dichloropane, and RTI-55), Ginkgo biloba extract, St John's Wort, hyperforin, adhyperforin, and uliginosin B Serotonin releasing Cloforex, dexfenfluramine, etolorex, fenfluramine, flucetorex, indeloxazine, agents levofenfluramine, tramadol, carbamazepine, amiflamine (FLA-336), viqualine (PK-5078), 2-Methyl-3,4-methylenedioxyamphetamine (2-Methyl-MDA), 3- Methoxy-4-methylamphetamine (MMA), 3-Methyl-4,5- methylenedioxyamphetamine (5-Methyl-MDA), 3,4-Ethylenedioxy-N- methylamphetamine (EDMA), 4-Methoxyamphetamine (PMA), 4-Methoxy-N- ethylamphetamine (PMEA), 4-Methoxy-N-methylamphetamine (PMMA), 4- Methylthioamphetamine (4-MTA), 5-(2-Aminopropyl)-2,3-dihydrobenzofuran (5-APDB), 5-Indanyl-2-aminopropane (IAP), 5-Methoxy-6-methylaminoindane (MMAI), 5-Trifluoromethyl-2-aminoindane (TAI), 5,6-Methylenedioxy-2- aminoindane (MDAI), 5,6-Methylenedioxy-N-methyl-2-aminoindane (MDMAI), 6-Chloro-2-aminotetralin (6-CAT), 6-Tetralinyl-2-aminopropane (TAP), 6,7- Methylenedioxy-2-aminotetralin (MDAT), 6,7-Methylenedioxy-N-methyl-2- aminotetralin (MDMAT), N-Ethyl-5-trifluoromethyl-2-aminoindane (ETAI), N- Methyl-5-indanyl-2-aminopropane, aminorex, MDEA, MBDB, αMT, 5MeO- NMT, NMT, NETP, Dimethyl-Serotonin, 5MeO-NET, αET and αMT
(22) TABLE-US-00003 TABLE 3 SEROTONIN RECEPTOR SIGNALING ACTIVATORS Signaling protein or pathway Activators ERK1, ERK2 Ceramide C6, t-butylhydroquinone MAPK JNK activators (e.g., Anisomycin), p38 MAPK inhibitors (e.g., U- 46619, AEBSF hydrochloride)
Agent Modalities
(23) A serotonin receptor activator can be selected from a number of different modalities. A serotonin receptor activator can be a nucleic acid molecule (e.g., DNA molecule or RNA molecule, e.g., mRNA), a small molecule (e.g., a small molecule serotonin receptor activator, an activator of a signaling cascade, or an epigenetic modifier), or a polypeptide (e.g., an antibody molecule or antibody-like molecule, e.g., an antibody or antigen binding fragment thereof). A serotonin receptor activator can also be a viral vector expressing a serotonin receptor activator (e.g., a neurotoxin) or a cell infected with a viral vector. Any of these modalities can be a serotonin receptor activator directed to target (e.g., to increase or activate) serotonin receptor function, serotonin receptor expression, serotonin receptor binding, or serotonin receptor signaling.
(24) The nucleic acid molecule, small molecule, peptide, polypeptide, or antibody molecule can be modified. For example, the modification can be a chemical modification, e.g., conjugation to a marker, e.g., fluorescent marker or a radioactive marker. In other examples, the modification can include conjugation to a molecule that enhances the stability or half-life of the serotonin receptor activator (e.g., an Fc domain of an antibody or serum albumin, e.g., human serum albumin). The modification can also include conjugation to an antibody to target the agent to a particular cell or tissue. Additionally, the modification can be a chemical modification, packaging modification (e.g., packaging within a nanoparticle or microparticle), or targeting modification to prevent the agent from crossing the blood brain barrier.
(25) Small Molecules
(26) Numerous small molecule serotonin receptor activators useful in the methods of the invention are described herein (e.g., listed in Table 2) and additional small molecule serotonin receptor activators useful as therapies for inflammatory or autoimmune disease or condition can also be identified through screening based on their ability to activate or increase serotonin receptor function or signaling. Small molecules include, but are not limited to, small peptides, peptidomimetics (e.g., peptoids), amino acids, amino acid analogs, synthetic polynucleotides, polynucleotide analogs, nucleotides, nucleotide analogs, organic and inorganic compounds (including heterorganic and organometallic compounds) generally having a molecular weight less than about 5,000 grams per mole, e.g., organic or inorganic compounds having a molecular weight less than about 2,000 grams per mole, e.g., organic or inorganic compounds having a molecular weight less than about 1,000 grams per mole, e.g., organic or inorganic compounds having a molecular weight less than about 500 grams per mole, and salts, esters, and other pharmaceutically acceptable forms of such compounds.
(27) Serotonin receptor activators can be used to treat a disorder or condition described herein. A pharmaceutical composition containing the serotonin receptor activator can be formulated for treatment of an inflammatory or autoimmune disease or condition described herein. In some embodiments, a pharmaceutical composition that includes the serotonin receptor activator is formulated for local administration, e.g., to the affected site in a subject.
(28) Antibodies
(29) The serotonin receptor activator can be an antibody or antigen binding fragment thereof. For example, a serotonin receptor activator described herein is an antibody that activates or induces the activity and/or function of serotonin receptor through binding to a serotonin receptor to activate the serotonin receptor (e.g., agonize the receptor).
(30) The making and use of therapeutic antibodies against a target antigen (e.g., against a serotonin receptor listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, or HTR7) is known in the art. See, for example, the references cited herein above, as well as Zhiqiang An (Editor), Therapeutic Monoclonal Antibodies: From Bench to Clinic. 1st Edition. Wiley 2009, and also Greenfield (Ed.), Antibodies: A Laboratory Manual. (Second edition) Cold Spring Harbor Laboratory Press 2013, for methods of making recombinant antibodies, including antibody engineering, use of degenerate oligonucleotides, 5′-RACE, phage display, and mutagenesis; antibody testing and characterization; antibody pharmacokinetics and pharmacodynamics; antibody purification and storage; and screening and labeling techniques.
(31) Viral Vectors
(32) The serotonin receptor activator can be delivered by a viral vector (e.g., a viral vector expressing a neurotoxin, e.g., a neurotoxin listed in Table 11). A viral vector expressing a neurotoxin from Table 11 or neurotoxins DON or pertussis toxin can be administered to a cell or to a subject (e.g., a human subject or animal model) to modulate neurotransmission. Viral vectors can be directly administered (e.g., injected) to a site of inflammation to treat an inflammatory or autoimmune disease or condition.
(33) Viral genomes provide a rich source of vectors that can be used for the efficient delivery of exogenous genes into a mammalian cell. Viral genomes are particularly useful vectors for gene delivery because the polynucleotides contained within such genomes are typically incorporated into the nuclear genome of a mammalian cell by generalized or specialized transduction. These processes occur as part of the natural viral replication cycle, and do not require added proteins or reagents in order to induce gene integration. Examples of viral vectors include a retrovirus (e.g., Retroviridae family viral vector), adenovirus (e.g., Ad5, Ad26, Ad34, Ad35, and Ad48), parvovirus (e.g., adeno-associated viruses), coronavirus, negative strand RNA viruses such as orthomyxovirus (e.g., influenza virus), rhabdovirus (e.g., rabies and vesicular stomatitis virus), paramyxovirus (e.g., measles and Sendai), positive strand RNA viruses, such as picornavirus and alphavirus, and double stranded DNA viruses including adenovirus, herpesvirus (e.g., Herpes Simplex virus types 1 and 2, Epstein-Barr virus, cytomegalovirus, replication deficient herpes virus), and poxvirus (e.g., vaccinia, modified vaccinia Ankara (MVA), fowlpox and canarypox). Other viruses include Norwalk virus, togavirus, flavivirus, reoviruses, papovavirus, hepadnavirus, human papilloma virus, human foamy virus, and hepatitis virus, for example. Examples of retroviruses include: avian leukosis-sarcoma, avian C-type viruses, mammalian C-type, B-type viruses, D-type viruses, oncoretroviruses, HTLV-BLV group, lentivirus, alpharetrovirus, gammaretrovirus, spumavirus (Coffin, J. M., Retroviridae: The viruses and their replication, Virology (Third Edition) Lippincott-Raven, Philadelphia, 1996). Other examples include murine leukemia viruses, murine sarcoma viruses, mouse mammary tumor virus, bovine leukemia virus, feline leukemia virus, feline sarcoma virus, avian leukemia virus, human T-cell leukemia virus, baboon endogenous virus, Gibbon ape leukemia virus, Mason Pfizer monkey virus, simian immunodeficiency virus, simian sarcoma virus, Rous sarcoma virus and lentiviruses. Other examples of vectors are described, for example, in U.S. Pat. No. 5,801,030, the teachings of which are incorporated herein by reference.
(34) Cell-Based Therapies
(35) A serotonin receptor activator described herein can be administered to a cell in vitro (e.g., an immune cell), which can subsequently be administered to a subject (e.g., a human subject or animal model). The serotonin receptor activator can be administered to the cell to effect an immune response (e.g., deactivation, polarization, antigen presentation, tolerance, cytokine suppression, migration, senescence, or differentiation) as described herein. Once the immune response is elicited, the cell can be administered to a subject (e.g., injected) to treat an autoimmune or inflammatory disease or condition. The immune cell can be locally administered (e.g., injected into a spleen, lymph node, primary, secondary, or tertiary lymphoid organ, or a site of inflammation).
(36) A serotonin receptor activator can also be administered to a cell in vitro (e.g., an immune cell) to alter gene expression in the cell. The serotonin receptor activator can increase the expression of one or more serotonin receptors in an immune cell. The serotonin receptor activator can be an exogenous gene encoded by a plasmid that is introduced into the cell using standard methods (e.g., calcium phosphate precipitation, electroporation, microinjection, infection, lipofection, impalefection, laserfection, or magnetofection). The serotonin receptor activator can be a viral vector (e.g., a viral vector expressing a serotonin receptor activator) that is introduced to the cell using standard transduction methods. The plasmid or vector can also contain a reporter construct (e.g., a fluorescent reporter) that can be used to confirm expression of the transgene by the immune cell has been contacted with a serotonin receptor activator to increase gene or protein expression, the cell can be administered to a subject (e.g., injected) to treat an autoimmune or inflammatory disease or condition. The immune cell can be locally administered (e.g., injected into a spleen, lymph node, primary, secondary, or tertiary lymphoid organ, barrier tissue, or a site of inflammation).
(37) The cell can be administered to a subject immediately after being contacted with a serotonin receptor activator (e.g., within 5, 10, 15, 30, 45, or 60 minutes of being contacted with a serotonin receptor activator), or 6 hours, 12 hours, 24 hours, 2 days, 3, days, 4 days, 5, days, 6 days, 7 days or more after being contacted with a serotonin receptor activator. The method can include an additional step of evaluating the immune cell for an immune cell activity (e.g., activation, polarization, antigen presentation, cytokine production, migration, proliferation, or differentiation) or modulation of gene expression after contact with a serotonin receptor activator and before administration to a subject.
(38) Blood Brain Barrier Permeability
(39) In some embodiments, the serotonin receptor activators for use in the present invention are agents that are not capable of crossing, or that do not cross, the blood brain barrier (BBB) of a mammal, e.g., an experimental rodent (e.g., mouse or rat), dog, pig, non-human primate, or a human. The BBB is a highly selective semipermeable membrane barrier that separates the circulating blood from the brain extracellular fluid (e.g., cerebrospinal fluid) in the central nervous system (CNS). The BBB is made up of high-density endothelial cells, which are connected by tight junctions. These cells prevent most molecular compounds in the bloodstream (e.g., large molecules and hydrophilic molecules) from entering the brain. Water, some gases (e.g., oxygen and carbon dioxide), and lipid-soluble molecules (e.g., hydrophobic molecules, such as steroid hormones) can cross the BBB by passive diffusion. Molecules that are needed for neural function, such as glucose and amino acids, are actively transported across the BBB.
(40) A number of approaches can be used to render an agent BBB impermeable. These methods include modifications to increase an agent's size, polarity, or flexibility or reduce its lipophilicity, targeting approaches to direct an agent to another part of the body and away from the brain, and packaging approaches to deliver an agent in a form that does not freely diffuse across the BBB. These approaches can be used to render a BBB permeable serotonin receptor activator impermeable, and they can also be used to improve the properties (e.g., cell-specific targeting) of a serotonin receptor activator that does not cross the BBB. The methods that can be used to render an agent BBB impermeable are discussed in greater detail herein below.
(41) Formulation of BBB-Impermeable Agents for Enhanced Cell Targeting
(42) One approach that can be used to render a serotonin receptor activator BBB impermeable is to conjugate the agent to a targeting moiety that directs it somewhere other than the brain. The targeting moiety can be an antibody for a receptor expressed by the target cell (e.g., N-Acetylgalactosamine for liver transport; DGCR2, GBF1, GPR44 or SerpinB10 for pancreas transport; Secretoglobin, family 1A, member 1 for lung transport). The targeting moiety can also be a ligand of any receptor or other molecular identifier expressed on the target cell in the periphery. These targeting moieties can direct the serotonin receptor activator of interest to its corresponding target cell, and can also prevent BBB crossing by directing the agent away from the BBB and increasing the size of the serotonin receptor activator via conjugation of the targeting moiety.
(43) Serotonin receptor activators can also be rendered BBB impermeable through formulation in a particulate delivery system (e.g., a nanoparticle, liposome, or microparticle), such that the agent is not freely diffusible in blood and cannot cross the BBB. The particulate formulation used can be chosen based on the desired localization of the serotonin receptor activator (e.g., a lymph node, lymphoid organ, or site of inflammation), as particles of different sizes accumulate in different locations. For example, nanoparticles with a diameter of 45 nm or less enter the lymph node, while 100 nm nanoparticles exhibit poor lymph node trafficking. Some examples of the link between particle size and localization in vivo are described in Reddy et al., J Controlled Release 112:26 2006, and Reddy et al., Nature Biotechnology 25:1159 2007.
(44) Serotonin receptor activators can be tested after the addition of a targeting moiety or after formulation in a particulate delivery system to determine whether or not they cross the BBB. Models for assessing BBB permeability include in vitro models (e.g., monolayer models, co-culture models, dynamic models, multi-fluidic models, isolated brain microvessels), in vivo models, and computational models as described in He et al., Stroke 45:2514 2014; Bickel, NeuroRx 2:15 2005; and Wang et al., Int J Pharm 288:349 2005. A serotonin receptor activator that exhibits BBB impermeability can be used in the methods described herein.
(45) Modification of Existing Compounds to Render them BBB Impermeable
(46) There are multiple parameters that have been empirically derived in the field of medicinal chemistry to predict whether a compound will cross the BBB. The most common numeric value for describing permeability across the BBB is the log BB, defined as the logarithmic ratio of the concentration of a compound in the brain and in the blood. Empirical rules of thumb have been developed to predict BBB permeability, including rules regarding molecular size, polar surface area, sum of oxygen and nitrogen atoms, lipophilicity (e.g., partition coefficient between apolar solvent and water), “lipoaffinity”, molecular flexibility, and number of rotatable bonds (summarized in Muehlbacher et al., J Comput Aided Mol Des. 25: 1095 2011; and Geldenhuys et al., Ther Deliv. 6: 961 2015). Some preferred limits on various parameters for BBB permeability are listed in Table 1 of Ghose et al., ACS Chem Neurosci. 3: 50 2012, which is incorporated herein by reference. Based on the parameters shown in the table, one of skill in the art could modify an existing serotonin receptor activator to render it BBB impermeable.
(47) One method of modifying a serotonin receptor activator to prevent BBB crossing is to add a molecular adduct that does not affect the target binding specificity, kinetics, or thermodynamics of the agent. Molecular adducts that can be used to render an agent BBB impermeable include polyethylene glycol (PEG), a carbohydrate monomer or polymer, a dendrimer, a polypeptide, a charged ion, a hydrophilic group, deuterium, and fluorine. Serotonin receptor activators can be tested after the addition of one or more molecular adducts or after any other properties are altered to determine whether or not they cross the BBB. Models for assessing BBB permeability include in vitro models (e.g., monolayer models, co-culture models, dynamic models, multi-fluidic models, isolated brain microvessels), in vivo models, and computational models as described in He et al., Stroke 45:2514 2014; Bickel, NeuroRx 2:15 2005; and Wang et al., Int J Pharm 288:349 2005. A serotonin receptor activator that exhibits BBB impermeability can be used in the methods described herein.
(48) Screening for or Development of BBB Impermeable Agents
(49) Another option for developing BBB impermeable agents is to find or develop new agents that do not cross the BBB. One method for finding new BBB impermeable agents is to screen for compounds that are BBB impermeable. Compound screening can be performed using in vitro models (e.g., monolayer models, co-culture models, dynamic models, multi-fluidic models, isolated brain microvessels), in vivo models, and computational models, as described in He et al., Stroke 45:2514 2014; Bickel, NeuroRx 2:15 2005; Wang et al., Int J Pharm 288:349 2005, and Czupalla et al., Methods Mol Biol 1135:415 2014. For example, the ability of a molecule to cross the blood brain barrier can be determined in vitro using a transwell BBB assay in which microvascular endothelial cells and pericytes are co-cultured separated by a thin macroporous membrane, see e.g., Naik et al., J Pharm Sci 101:1337 2012 and Hanada et al., Int J Mol Sci 15:1812 2014; or in vivo by tracking the brain uptake of the target molecule by histology or radio-detection. Compounds would be deemed appropriate for use as serotonin receptor activators in the methods described herein if they do not display BBB permeability in the aforementioned models.
(50) Modulation of Immune Cells
(51) The methods described herein can be used to modulate an immune response in a subject or cell by administering to a subject or cell a serotonin receptor activator in a dose (e.g., an effective amount) and for a time sufficient to modulate the immune response. These methods can be used to treat a subject in need of modulating an immune response, e.g., a subject with an inflammatory condition, an autoimmune disease or condition. One way to modulate an immune response is to modulate an immune cell activity. This modulation can occur in vivo (e.g., in a human subject or animal model) or in vitro (e.g., in acutely isolated or cultured cells, such as human cells from a patient, repository, or cell line, or rodent cells). The types of cells that can be modulated include T cells (e.g., peripheral T cells, cytotoxic T cells/CD8+ T cells, T helper cells/CD4+ T cells, memory T cells, regulatory T cells/Tregs, natural killer T cells/NKTs, mucosal associated invariant T cells, and gamma delta T cells), B cells (e.g., memory B cells, plasmablasts, plasma cells, follicular B cells/B-2 cells, marginal zone B cells, B-1 cells, regulatory B cells/Bregs), dendritic cells (e.g., myeloid DCs/conventional DCs, plasmacytoid DCs, or follicular DCs), granulocytes (e.g., eosinophils, mast cells, neutrophils, and basophils), monocytes, macrophages (e.g., peripheral macrophages or tissue resident macrophages), myeloid-derived suppressor cells (MDSCs), NK cells, innate lymphoid cells (ILC1, ILC2, or ILC3 cells), thymocytes, and megakaryocytes.
(52) The immune cell activities that can be modulated by administering to a subject or contacting a cell with an effective amount of a serotonin receptor activator described herein include activation (e.g., macrophage, T cell, NK cell, ILC, B cell, dendritic cell, neutrophil, eosinophil, or basophil activation), phagocytosis (e.g., macrophage, neutrophil, monocyte, mast cell, B cell, eosinophil, or dendritic cell phagocytosis), antibody-dependent cellular phagocytosis (e.g., ADCP by monocytes, macrophages, neutrophils, or dendritic cells), antibody-dependent cellular cytotoxicity (e.g., ADCC by NK cells, ILCs, monocytes, macrophages, neutrophils, eosinophils, dendritic cells, or T cells), polarization (e.g., macrophage polarization toward an M1 or M2 phenotype or T cell polarization), proliferation (e.g., proliferation of B cells, T cells, monocytes, macrophages, dendritic cells, NK cells, ILCs, mast cells, neutrophils, eosinophils, or basophils), lymph node homing (e.g., lymph node homing of T cells, B cells, dendritic cells, or macrophages), lymph node egress (e.g., lymph node egress of T cells, B cells, dendritic cells, or macrophages), recruitment (e.g., recruitment of B cells, T cells, monocytes, macrophages, dendritic cells, NK cells, ILCs, mast cells, neutrophils, eosinophils, or basophils), migration (e.g., migration of B cells, T cells, monocytes, macrophages, dendritic cells, NK cells, ILCs, mast cells, neutrophils, eosinophils, or basophils), differentiation (e.g., regulatory T cell differentiation), immune cell cytokine production, antigen presentation (e.g., dendritic cell, macrophage, and B cell antigen presentation), maturation (e.g., dendritic cell maturation), and degranulation (e.g., mast cell, NK cell, ILC, cytotoxic T cell, neutrophil, eosinophil, or basophil degranulation). Innervation of lymph nodes or lymphoid organs, development of high endothelial venules (HEVs), and development of ectopic or tertiary lymphoid organs (TLOs) can also be modulated using the methods described herein. Modulation can increase or decrease these activities, depending on the serotonin receptor activator used to contact the cell or treat a subject.
(53) In some embodiments, an effective amount of a serotonin receptor activator is an amount sufficient to modulate (e.g., increase or decrease) one or more (e.g., 2 or more, 3 or more, 4 or more) of the following immune cell activities in the subject or cell: T cell polarization; T cell activation; dendritic cell activation; neutrophil activation; eosinophil activation; basophil activation; T cell proliferation; B cell proliferation; T cell proliferation; monocyte proliferation; macrophage proliferation; dendritic cell proliferation; NK cell proliferation; ILC proliferation; mast cell proliferation; neutrophil proliferation; eosinophil proliferation; basophil proliferation; cytotoxic T cell activation; circulating monocytes; peripheral blood hematopoietic stem cells; macrophage polarization; macrophage phagocytosis; macrophage ADCP, neutrophil phagocytosis; monocyte phagocytosis; mast cell phagocytosis; B cell phagocytosis; eosinophil phagocytosis; dendritic cell phagocytosis; macrophage activation; antigen presentation (e.g., dendritic cell, macrophage, and B cell antigen presentation); antigen presenting cell migration (e.g., dendritic cell, macrophage, and B cell migration); lymph node immune cell homing and cell egress (e.g., lymph node homing and egress of T cells, B cells, dendritic cells, or macrophages); NK cell activation; NK cell ADCC, mast cell degranulation; NK cell degranulation; ILC activation; ILC ADCC, ILC degranulation; cytotoxic T cell degranulation; neutrophil degranulation; eosinophil degranulation; basophil degranulation; neutrophil recruitment; eosinophil recruitment; NKT cell activation; B cell activation; regulatory T cell differentiation; dendritic cell maturation; development of high endothelial venules (HEVs); development of ectopic or tertiary lymphoid organs (TLOs); or lymph node or secondary lymphoid organ innervation. In certain embodiments, the immune response (e.g., an immune cell activity listed herein) is decreased in the subject or cell at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80%, 100%, 150%, 200%, 300%, 400%, 500% or more, compared to before the administration. In certain embodiments, the immune response is decreased in the subject or cell between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%, between 50-200%, between 100%-500%.
(54) After a serotonin receptor activator is administered to treat a patient or contact a cell, a readout can be used to assess the effect on immune cell activity. Immune cell activity can be assessed by measuring a cytokine or marker associated with a particular immune cell type, as listed in Table 4 (e.g., performing an assay listed in Table 4 for the cytokine or marker). In certain embodiments, the parameter is decreased in the subject at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80%, 100%, 150%, 200%, 300%, 400%, 500% or more, compared to before the administration. In certain embodiments, the parameter is decreased in the subject between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%, between 50-200%, between 100%-500%. A serotonin receptor activator can be administered at a dose (e.g., an effective amount) and for a time sufficient to modulate an immune cell activity described herein below.
(55) After a serotonin receptor activator is administered to treat a patient or contact a cell, a readout can be used to assess the effect on immune cell migration. Immune cell migration can be assessed by measuring the number of immune cells in a location of interest (e.g., a spleen, lymph node, primary, secondary, or tertiary lymphoid organ, or a site of inflammation). Immune cell migration can also be assessed by measuring a chemokine, receptor, or marker associated with immune cell migration, as listed in Tables 5 and 6. In certain embodiments, the parameter is decreased in the subject at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80%, 100%, 150%, 200%, 300%, 400%, 500% or more, compared to before the administration. In certain embodiments, the parameter is decreased in the subject between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%, between 50-200%, between 100%-500%. A serotonin receptor activator can be administered at a dose (e.g., an effective amount) and for a time sufficient to modulate an immune cell migration as described herein below.
(56) A serotonin receptor activator described herein can affect immune cell migration. Immune cell migration between peripheral tissues, the blood, and the lymphatic system as well as lymphoid organs is essential for the orchestration of productive innate and adaptive immune responses. Immune cell migration is largely regulated by trafficking molecules including integrins, immunoglobulin cell-adhesion molecules (IgSF CAMs), cadherins, selectins, and a family of small cytokines called chemokines (Table 5). Cell adhesion molecules and chemokines regulate immune cell migration by both inducing extravasation from the circulation into peripheral tissues and acting as guidance cues within peripheral tissues themselves. For extravasation to occur, chemokines must act in concert with multiple trafficking molecules including C-type lectins (L-, P-, and E-selectin), multiple integrins, and cell adhesion molecules (ICAM-1, VCAM-1 and MAdCAM-1) to enable a multi-step cascade of immune cell capturing, rolling, arrest, and transmigration via the blood endothelial barrier (Table 6). Some trafficking molecules are constitutively expressed and manage the migration of immune cells during homeostasis, while others are specifically upregulated by inflammatory processes such as infection and autoimmunity.
(57) The expression of trafficking molecules important for extravasation is mainly regulated on specialized blood vessels called HEVs, which are the entry portals from the circulation into the periphery and are usually present in secondary lymphoid organs (SLOs) and chronically inflamed tissue. Chronically inflamed tissues often develop lymphoid-like structures called TLOs that contain structures resembling SLOs including HEVs, lymphoid stromal cells, and confined compartments of T and B lymphocytes. As they can act as major gateways for immune cell migration into peripheral tissues, TLOs have been shown to be important in the pathogenesis of autoimmune disorders.
(58) Once within peripheral tissues, four modes of immune cell migration have been observed: 1) chemokinesis: migration driven by soluble chemokines, without concentration gradients to provide directional bias, 2) haptokinesis: migration along surfaces presenting immobilized ligands such as chemokines or integrins, without concentration gradients to provide directional bias, 3) chemotaxis: directional migration driven by concentration gradients of soluble chemokines, and 4) haptotaxis: directional migration along surfaces presenting gradients of immobilized ligands such as chemokines or integrins. The response of immune cells to trafficking molecules present on the endothelium depends on the composition, expression, and/or functional activity of their cognate receptors, which in turn depends on activation state and immune cell subtype.
(59) Innate immune cells generally migrate toward inflammation-induced trafficking molecules in the periphery. In contrast, naïve T and B cells constantly re-circulate between the blood and secondary lymphoid organs to screen for their cognate antigen presented by activated dendritic cells (DCs) or fibroblastic reticular cells (FRCs), respectively. If activated by recognition of their cognate antigen and appropriate co-stimulation within SLOs, both cell types undergo a series of complex maturation steps, including differentiation and proliferation, ultimately leading to effector and memory immune cell phenotypes. To reach their peripheral target sites, certain effector and memory T and B cell subsets egress from SLOs to the blood circulation via efferent lymphatics. In order to do so, they migrate toward a Sphingosine-1-phosphate (S1P) gradient sensed using their Sphingosine-1-phosphate receptor 1 (S1P.sub.1 or S1PR1). For successful egress into efferent lymphatics, immune cells need to overcome SLO retention signals through the CCR7/CCL21 axis or through CD69-mediated downregulation of S1P.sub.1.
(60) Finally, certain immune cell subsets, for example mature dendritic cells (DCs) and memory T cells, migrate from peripheral tissues into SLOs via afferent lymphatics. To exit from peripheral tissues and enter afferent lymphatics, immune cells again largely depend on the CCR7/CCL21 and S1P.sub.1/S1P axis. Specifically, immune cells need to overcome retention signals delivered via the CCR7/CCL21 axis, and migrate toward an S1P gradient established by the lymphatic endothelial cells using S1P.sub.1. The selective action of trafficking molecules on distinct immune cell subsets as well as the distinct spatial and temporal expression patterns of both the ligands and receptors are crucial for the fine-tuning of immune responses during homeostasis and disease.
(61) Aberrant immune cell migration is observed in multiple immune-related pathologies. Immune cell adhesion deficiencies, caused by molecular defects in integrin expression, fucosylation of selectin ligands, or inside-out activation of integrins on leukocytes and platelets, lead to impaired immune cell migration into peripheral tissues. This results in leukocytosis and in increased susceptibility to recurrent bacterial and fungal infections, which can be difficult to treat and potentially life-threatening. Alternatively, exaggerated migration of specific immune cell subsets into specific peripheral tissues is associated with a multitude of pathologies. For example, excessive neutrophil accumulation in peripheral tissues contributes to the development of ischemia-reperfusion injury, such as that observed during acute myocardial infarction, stroke, shock and acute respiratory distress syndrome. Excessive Th1 inflammation characterized by tissue infiltration of interferon-gamma secreting effector T cells and activated macrophages is associated with atherosclerosis, allograft rejection, hepatitis, and multiple autoimmune diseases including multiple sclerosis, rheumatoid arthritis, psoriasis, Crohn's disease, type 1 diabetes and lupus erythematodes. Excessive Th2 inflammation characterized by tissue infiltration of IL-4, IL-5, and IL-13 secreting Th2 cells, eosinophils and mast cells is associated with asthma, food allergies and atopic dermatitis.
(62) In some embodiments, a serotonin receptor activator described herein increases macrophage lymph node homing and/or improves organ function. In some embodiments, a serotonin receptor activator described herein decreases one or more of macrophage migration, macrophage proliferation, macrophage recruitment, macrophage lymph node egress, macrophage differentiation, macrophage activation, macrophage polarization, macrophage cytokine production, macrophage maturation, macrophage antigen presentation, macrophage serotonin receptor expression (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7), macrophage ADCC, or macrophage ADCP. In some embodiments, the cytokine is a pro-inflammatory cytokine (e.g., IL-8). In some embodiments, a serotonin receptor activator described herein decreases inflammation, auto-antibody levels, or the rate or number of relapses or flare-ups.
(63) In some embodiments, a serotonin receptor activator described herein increases T cell lymph node homing and/or improves organ function. In some embodiments, a serotonin receptor activator described herein decreases one or more of T cell migration, T cell proliferation, T cell recruitment, T cell lymph node egress, T cell differentiation, T cell activation, T cell polarization, T cell cytokine production, T cell maturation, T cell antigen presentation, T cell expression of one or more serotonin receptors (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7), T cell ADCC, or T cell ADCP. In some embodiments, the cytokine is a pro-inflammatory cytokine (e.g., IL-8). In some embodiments, a serotonin receptor activator described herein decreases inflammation, auto-antibody levels, or the rate or number of relapses or flare-ups.
(64) In some embodiments, a serotonin receptor activator described herein increases dendritic cell lymph node homing and/or improves organ function. In some embodiments, a serotonin receptor activator described herein decreases one or more of dendritic cell migration, dendritic cell proliferation, dendritic cell recruitment, dendritic cell lymph node egress, dendritic cell differentiation, dendritic cell activation, dendritic cell polarization, dendritic cell cytokine production, dendritic cell maturation, dendritic cell antigen presentation, dendritic cell expression of one or more serotonin receptors (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7), dendritic cell ADCC, or dendritic cell ADCP. In some embodiments, the cytokine is a pro-inflammatory cytokine (e.g., IL-8). In some embodiments, a serotonin receptor activator described herein decreases inflammation, auto-antibody levels, or the rate or number of relapses or flare-ups.
(65) In some embodiments, a serotonin receptor activator described herein increases improves organ function and/or increases neutrophil lymph node homing. In some embodiments, a serotonin receptor activator described herein decreases one or more of neutrophil migration, neutrophil proliferation, neutrophil recruitment, neutrophil differentiation, neutrophil activation, neutrophil maturation, neutrophil cytokine production, neutrophil antigen presentation, neutrophil lymph node egress, neutrophil expression of one or more serotonin receptors (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7), neutrophil ADCC, or neutrophil ADCP. In some embodiments, the cytokine is a pro-inflammatory cytokine (e.g., IL8). In some embodiments, a serotonin receptor activator described herein decreases inflammation, auto-antibody levels, or the rate or number of relapses or flare-ups. In some embodiments, a serotonin receptor activator described herein decreases one or more of neutrophil migration, neutrophil activation, neutrophil recruitment, or neutrophil lymph node egress by decreasing IL-8 cytokine production by T cells, macrophages, or dendritic cells, or by decreasing activation or polarization of macrophages, T cells, or dendritic cells.
(66) Immune Effects
(67) A variety of in vitro and in vivo assays can be used to determine how a serotonin receptor activator affects an immune cell activity. The effect of a serotonin receptor activator on T cell polarization in a subject can be assessed by evaluation of cell surface markers on T cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and T cells from the sample evaluated for one or more (e.g., 2, 3, or 4 or more) Th1-specific markers: T-bet, IL-12R, STAT4, or chemokine receptors CCR5, CXCR6, and CXCR3; or Th2-specific markers: CCR3, CXCR4, or IL-4Rα. T cell polarization can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to T cells in vitro (e.g., T cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate T cell polarization. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cellular markers. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(68) The effect of a serotonin receptor activator on T cell activation or inactivation in a subject can be assessed by evaluation of cellular markers on T cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and T cells from the sample evaluated for one or more (e.g., 2, 3, 4 or more) activation markers: CD25, CD71, CD26, CD27, CD28, CD30, CD154, CD40L, CD134, CD69, CD62L or CD44. T cell activation or inactivation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to T cells in vitro (e.g., T cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate T cell activation or inactivation. Similar approaches can be used to assess the effect of a serotonin receptor activator on activation or inactivation of other immune cells, such as eosinophils (markers: CD35, CD11b, CD66, CD69 and CD81), dendritic cells (makers: IL-8, MHC class II, CD40, CD80, CD83, and CD86), basophils (CD63, CD13, CD4, and CD203c), ILCs (markers: CD69), and neutrophils (CD11 b, CD35, CD66b and CD63). These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cellular markers. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(69) The effect of a serotonin receptor activator on immune cell activation or inactivation can also be assessed through measurement of secreted cytokines and chemokines. An activated immune cell (e.g., T cell, B cell, macrophage, monocyte, dendritic cell, eosinophil, basophil, mast cell, NK cell, ILC, or neutrophil) can produce pro-inflammatory cytokines and chemokines (e.g., IL-1β, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-18, TNFα, and IFN-γ). Activation or inactivation can be assessed by measuring cytokine levels in a blood sample, lymph node biopsy, or tissue sample from a human subject or animal model, with lower levels of pro-inflammatory cytokines following treatment with a serotonin receptor activator indicating decreased activation, and higher levels indicating decreased activation. Activation or inactivation can also be assessed in vitro by measuring cytokines secreted into the media by cultured cells. Cytokines can be measured using ELISA, western blot analysis, and other approaches for quantifying secreted proteins. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(70) The effect of a serotonin receptor activator on T cell proliferation in a subject can be assessed by evaluation of markers of proliferation in T cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and T cells from the sample evaluated for Ki67 marker expression. T cell proliferation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to T cells in vitro (e.g., T cells obtained from a subject, animal model, repository, or commercial source) and measuring Ki67 to evaluate T cell proliferation. Assessing whether a serotonin receptor activator suppresses T cell proliferation can also be performed by in vivo (e.g., in a human subject or animal model) by collecting blood samples before and after serotonin receptor activator administration and comparing T cell numbers, and in vitro by quantifying T cell numbers before and after contacting T cells with a serotonin receptor activator. These approaches can also be used to measure the effect of a serotonin receptor activator on proliferation of any immune cell (e.g., B cells, T cells, macrophages, monocytes, dendritic cells, NK cells, ILCs, mast cells, eosinophils, basophils, and neutrophils). Ki67 can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of nuclear markers. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(71) The effect of a serotonin receptor activator on cytotoxic T cell activity in a subject can be assessed by evaluation of T cell granule markers in T cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and T cells from the sample evaluated for granzyme or perforin expression. Cytotoxic T cell activity can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to cytotoxic T cells in vitro (e.g., cytotoxic T cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate suppression of T cell proliferation. These markers can be detected in the media from cytotoxic T cell cultures. Techniques including ELISA, western blot analysis can be used to detect granzyme and perforin in conditioned media, flow cytometry, immunohistochemistry, in situ hybridization, and other assays can detect intracellular granzyme and perforin and their synthesis. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(72) The effect of a serotonin receptor activator on circulating monocytes in a subject can be assessed by evaluation of cell surface markers on primary blood mononuclear cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and monocytes from the sample evaluated for CD14 and/or CD16 expression. Circulating monocytes can also be assessed using the same methods in an in vivo animal model. This assay can be performed by taking a blood sample before treatment with a serotonin receptor activator and comparing it to a blood sample taken after treatment. CD14 and CD16 can be detected using flow cytometry, immunohistochemistry, western blot analysis, or any other technique that can measure cell surface protein levels. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect. This assay can be used to detect the number of monocytes in the bloodstream or to determine suppression of monocytes adopting a pro-inflammatory (CD14+/CD16+) phenotype.
(73) The effect of a serotonin receptor activator on peripheral blood hematopoietic stem cells in a subject can be assessed by evaluation of cell surface markers on primary blood mononuclear cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and stem cells from the sample evaluated for one or more (2, 3 or 4 or more) specific markers: CD34, c-kit, Sca-1, or Thy1.1. Peripheral blood hematopoietic stem cells can also be assessed using the same methods in an in vivo animal model. This assay can be performed by taking a blood sample before treatment with a serotonin receptor activator and comparing it to a blood sample taken after treatment. The aforementioned markers can be detected using flow cytometry, immunohistochemistry, western blot analysis, or any other technique that can measure cell surface protein levels. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect. This assay can be used to detect the number of stem cells mobilized into the bloodstream or to determine whether treatment induces differentiation into a particular hematopoietic lineage (e.g., decreases in CD34 and increases in GPA indicates differentiation into red blood cells, decrease in CD34 and increases in CD14 indicates differentiation into monocytes, decreases in CD34 and increases in CD11 b or CD68 indicates differentiation into macrophages, decreases in CD34 and increases in CD42b indicates differentiation into platelets, decreases in CD34 and increases in CD3 indicates differentiation into T cells, decreases in CD34 and increases in CD19 indicates differentiation into B cells, decreases in CD34 and increases in CD25 or CD69 indicates differentiation into activated T cells, decreases in CD34 and increases in CD1c, CD83, CD141, CD209, or MHC II indicates differentiation into dendritic cells, decreases in CD34 and increases in CD56 indicates differentiation into NK cells, decreases in CD34 and increases in CD15 indicates differentiation into neutrophils, decreases in CD34 and increases in 2D7 antigen, CD123, or CD203c indicates differentiation into basophils, and decreases in CD34 and increases in CD193, EMR1, or Siglec-8 indicates differentiation into eosinophils.
(74) The effect of a serotonin receptor activator on macrophage polarization in a subject can be assessed by evaluation of cellular markers in macrophages cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and macrophages from the sample evaluated for one of more (2, 3 or 4 or more) specific markers. Markers for M1 polarization include IL-12, TNF, IL-1β, IL-6, IL-23, MARCO, MHC-II, CD86, iNOS, CXCL9, and CXCL10. Markers for M2 polarized macrophages include IL-10, IL1-RA, TGFβ, MR, CD163, DC-SIGN, Dectin-1, HO-1, arginase (Arg-1), CCL17, CCL22 and CCL24. Macrophage polarization can also be assessed using the same methods in an in vivo animal model. This assay can also be performed on cultured macrophages obtained from a subject, an animal model, repository, or commercial source to determine how contacting a macrophage with a serotonin receptor activator affects polarization. The aforementioned markers can be evaluated by comparing measurements obtained before and after administration of a serotonin receptor activator to a subject, animal model, or cultured cell. Surface markers or intracellular proteins (e.g., MHC-11, CD86, iNOS, CD163, Dectin-1, HO-1, Arg-1, etc.) can be measured using flow cytometry, immunohistochemistry, in situ hybridization, or western blot analysis, and secreted proteins (e.g., IL-12, TNF, IL-1β, IL-10, TGFβ, IL1-RA, chemokines CXC8, CXC9, CCL17, CCL22, and CCL24, etc.) can be measured using the same methods or by ELISA or western blot analysis of culture media or blood samples. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(75) The effect of a serotonin receptor activator on macrophage phagocytosis in a subject can be assessed by culturing macrophages obtained from the subject with fluorescent beads. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and macrophages from the sample evaluated for engulfment of fluorescent beads. This assay can also be performed on cultured macrophages obtained from an animal model, repository, or commercial source to determine how contacting a macrophage with a serotonin receptor activator affects phagocytosis. The same phagocytosis assay can be used to evaluate the effect of a serotonin receptor activator on phagocytosis in other immune cells (e.g., neutrophils, monocytes, mast cells, B cells, eosinophils, or dendritic cells). Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect on phagocytosis.
(76) In some embodiments, phagocytosis is ADCP. ADCP can be assessed using similar methods to those described above by incubating immune cells (e.g., macrophages, neutrophils, monocytes, mast cells, B cells, eosinophils, or dendritic cells) isolated from a blood sample, lymph node biopsy, or tissue sample with fluorescent beads coated with IgG antibodies. In some embodiments, immune cells are incubated with a target cell line that has been pre-coated with antibodies to a surface antigen expressed by the target cell line. ADCP can be evaluated by measuring fluorescence inside the immune cell or quantifying the number of beads or cells engulfed. This assay can also be performed on cultured immune cells obtained from an animal model, repository, or commercial source to determine how contacting an immune cell with a serotonin receptor activator affects ADCP. The ability of an immune cell to perform ADCP can also be evaluated by assessing expression of certain Fc receptors (e.g., FcγRIIa, FcγRIIIa, and FcγRI). Fc receptor expression can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, or other assays that allow for measurement of cell surface markers. Comparing phagocytosis or Fc receptor expression before and after administration of a serotonin receptor activator can be used to determine its effect on ACDP. In some embodiments, the serotonin receptor activator decreases ADCP of certain inflammatory inducing agents. In some embodiments, the serotonin receptor activator decreases macrophage ADCP of auto-antibody coated cells (e.g., in autoimmune diseases such as glomerular nephritis).
(77) The effect of a serotonin receptor activator on macrophage activation in a subject can be assessed by evaluation of cell surface markers on macrophages cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and macrophages from the sample evaluated for one or more (e.g., 1, 2, 3 or 4 or more) specific markers: F4/80, HLA molecules (e.g., MHC-II), CD80, CD68, CD11b, or CD86. Macrophage activation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to macrophages in vitro (e.g., macrophages obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate macrophage activation. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. As mentioned above, macrophage activation can also be evaluated based on cytokine production (e.g., pro-inflammatory cytokine production) as measured by ELISA and western blot analysis. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(78) The effect of a serotonin receptor activator on antigen presentation in a subject can be assessed by evaluation of cell surface markers on antigen presenting cells (e.g., dendritic cells, macrophages, and B cells) obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and antigen presenting cells (e.g., dendritic cells, macrophages, and B cells) from the sample evaluated for one or more (e.g., 2, 3 or 4 or more) specific markers: CD11c, CD11b, HLA molecules (e.g., MHC-II), CD40, B7, IL-2, CD80 or CD86. Antigen presentation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to antigen presenting cells (e.g., dendritic cells) in vitro (e.g., antigen presenting cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate antigen presentation. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(79) The effect of a serotonin receptor activator on antigen presenting cell migration in a subject can be assessed by evaluation of cell surface markers on antigen presenting cells (e.g., dendritic cells, B cells, and macrophages) obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and antigen presenting cells (e.g., dendritic cells, B cells, and macrophages) from the sample evaluated for CCR7 expression. Antigen presenting cell migration can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to antigen presenting cells (e.g., dendritic cells, B cells, and macrophages) in vitro (e.g., antigen presenting cells obtained from a subject, animal model, repository, or commercial source) and measuring CCR7 to evaluate antigen presenting cell migration. CCR7 can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(80) The effect of a serotonin receptor activator on lymph node immune cell homing and cell egress in a subject can be assessed by evaluation of cell surface markers on T or B cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and T or B cells from the sample evaluated for one or more specific markers: CCR7 or S1PR1. Lymph node immune cell homing and cell egress can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to T or B cells in vitro (e.g., T or B cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate T or B cell lymph node homing. These markers can also be used to assess lymph node homing and cell egress of dendritic cells and macrophages. CCR7 and S1PR1 can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. If using an animal model, lymph nodes or sites of inflammation can be imaged in vivo (e.g., using a mouse that expresses fluorescently labeled T or B cells) or after biopsy to determine whether T or B cell numbers change as a result of administration of a serotonin receptor activator. Comparing results from before and after administration of a serotonin receptor activator can be used to determine its effect.
(81) In some embodiments, a serotonin receptor activator increases homing or decreases egress of naïve T cells into or out of secondary lymphoid organs prior to antigen challenge (e.g., prior to administration of a vaccine) to generate a better antigen-specific response. In some embodiments, a serotonin receptor activator decreases homing or increases egress of inflammatory immune cells (e.g., neutrophils) into or out of peripheral tissues during injury to prevent conditions such as ischemia-reperfusion disorders. In some embodiments, a serotonin receptor activator decreases homing or increases egress of effector immune subsets into or out of peripheral tissues to avoid inflammation-induced tissue damage in autoimmune diseases.
(82) The effect of a serotonin receptor activator on NK cell activation in a subject can be assessed by evaluation of cell surface markers on NK cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and NK cells from the sample evaluated for one or more (e.g., 2, 3 or 4 or more) specific markers: CD117, NKp46, CD94, CD56, CD16, KIR, CD69, HLA-DR, CD38, KLRG1, and TIA-1. NK cell activation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to NK cells in vitro (e.g., NK cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate NK cell activation. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(83) In some embodiments, activated NK cells have decreased lytic function or cytotoxicity (e.g., capable of performing ADCC). The effect of a serotonin receptor activator on ADCC can be assessed by incubating immune cells capable of ADCC (e.g., NK cells, monocytes, macrophages, neutrophils, eosinophils, dendritic cells, or T cells) with a target cell line that has been pre-coated with antibodies to a surface antigen expressed by the target cell line. ADCC can be assessed by measuring the number of surviving target cells with a fluorescent viability stain or by measuring the secretion of cytolytic granules (e.g., perforin, granzymes, or other cytolytic proteins released from immune cells). Immune cells can be collected from a blood sample, lymph node biopsy, or tissue sample from a human subject or animal model treated with a serotonin receptor activator. This assay can also be performed by adding a serotonin receptor activator to immune cells in vitro (e.g., immune cells obtained from a subject, animal model, repository, or commercial source). The effect of a serotonin receptor activator on ADCC can be determined by comparing results from before and after serotonin receptor activator administration. In some embodiments, the serotonin receptor activator decreases NK cell ADCC of auto-antibody coated cells (e.g., to treat autoimmune disease).
(84) The effect of a serotonin receptor activator on ILC activation in a subject can be assessed by evaluation of cell surface markers on ILCs obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and ILCs from the sample evaluated for one or more (e.g., 2, 3 or 4 or more) specific markers: NKp46, CD69, T-bet, RORα, GATA3, and RORγt. ILC activation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to ILCs in vitro (e.g., ILCs obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate ILC activation. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(85) In some embodiments, activated ILCs have increased lytic function or are cytotoxic (e.g., capable of performing ADCC). The effect of a serotonin receptor activator on ADCC can be assessed by incubating immune cells capable of ADCC (e.g., ILCs, monocytes, macrophages, neutrophils, eosinophils, dendritic cells, or T cells) with a target cell line that has been pre-coated with antibodies to a surface antigen expressed by the target cell line. ADCC can be assessed by measuring the number of surviving target cells with a fluorescent viability stain or by measuring the secretion of cytolytic granules (e.g., perforin, granzymes, or other cytolytic proteins released from immune cells). Immune cells can be collected from a blood sample, lymph node biopsy, or tissue sample from a human subject or animal model treated with a serotonin receptor activator. This assay can also be performed by adding a serotonin receptor activator to immune cells in vitro (e.g., immune cells obtained from a subject, animal model, repository, or commercial source). The effect of a serotonin receptor activator on ADCC can be determined by comparing results from before and after serotonin receptor activator administration. In some embodiments, the serotonin receptor activator decreases ILC ADCC of auto-antibody coated cells (e.g., to treat autoimmune disease).
(86) The effect of a serotonin receptor activator on mast cell degranulation in a subject can be assessed by evaluation of markers in mast cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and mast cells from the sample evaluated for one or more (e.g., 1, 2, 3 or 4 or more) specific markers: IgE, histamine, IL-4, TNFα, CD300a, tryptase, or MMP9. Mast cell degranulation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to mast cells in vitro (e.g., mast cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate mast cell degranulation. Some of these markers (e.g., histamine, TNFα, and IL-4) can be detected by measuring levels in the mast cell culture medium after mast cells are contacted with a serotonin receptor activator. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration. This approach can also be used to evaluate the effect of a serotonin receptor activator on degranulation by other cells, such as neutrophils (markers: CD11b, CD13, CD18, CD45, CD15, CD66b IL-1β, IL-8, and IL-6), eosinophils (markers: major basic protein (MBP), eosinophil cationic protein (ECP), eosinophil peroxidase (EPX), eosinophil-derived neurotoxin (EDN)), basophils (markers: histamine, heparin, chondroitin, elastase, lysophospholipase, and LTD-4), NK cells (markers: LAMP-1, perforin, and granzymes), and cytotoxic T cells (markers: LAMP-1, perforin, and granzymes). Markers can be detected using flow cytometry, immunohistochemistry, ELISA, western blot analysis, or in situ hybridization.
(87) The effect of a serotonin receptor activator on neutrophil recruitment in a subject can be assessed by evaluation of cell surface markers on neutrophils obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and neutrophils from the sample evaluated for one or more (e.g., 1, 2, 3 or 4 or more) specific markers: CD11b, CD14, CD114, CD177, CD354, or CD66. To determine whether neutrophils are being recruited to a specific site (e.g., a site of inflammation), the same markers can be measured at the site of inflammation o. Neutrophil recruitment can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to neutrophils in vitro (e.g., neutrophils obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate neutrophil recruitment. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(88) The effect of a serotonin receptor activator on eosinophil recruitment in a subject can be assessed by evaluation of cell surface markers on eosinophil obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and eosinophils from the sample evaluated for one or more (e.g., 1, 2, 3 or 4 or more) specific markers: CD15, IL-3R, CD38, CD106, CD294 or CD85G. To determine whether eosinophils are being recruited to a specific site (e.g., a site of inflammation), the same markers can be measured at the site of inflammation. Eosinophil recruitment can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to eosinophils in vitro (e.g., eosinophils obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate eosinophil recruitment. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(89) The effect of a serotonin receptor activator on NKT cell activation in a subject can be assessed by evaluation of cell surface markers on NKT cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and NKT cells from the sample evaluated for one or more specific markers: CD272 or CD352. Activated NKT cells produce IFN-γ, IL-4, GM-CSF, IL-2, IL-13, IL-17, IL-21 and TNFα. NKT cell activation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to NKT cells in vitro (e.g., NKT cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate NKT cell activation. Cell surface markers CD272 and CD352 can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. The secreted proteins can be detected in blood samples or cell culture media using ELISA, western blot analysis, or other methods for detecting proteins in solution. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(90) The effects of a serotonin receptor activator on B cell activation in a subject can be assessed by evaluation of cell surface markers on B cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and B cells from the sample evaluated for one or more (e.g., 2, 3 or 4 or more) specific markers: CD19, CD20, CD40, CD80, CD86, CD69, IgM, IgD, IgG, IgE, or IgA. B cell activation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to B cells in vitro (e.g., B cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate B cell activation. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cell surface markers. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(91) The effect of a serotonin receptor activator on regulatory T cell differentiation in a subject can be assessed by evaluation of markers in regulatory T cells obtained from the subject. A blood sample, lymph node biopsy, or tissue sample can be collected from a subject and regulatory T cells from the sample evaluated for one or more (e.g., 1, 2, 3, 4 or more) specific markers: CD4, CD25, or FoxP3. Regulatory T cell differentiation can also be assessed using the same methods in an in vivo animal model. This assay can also be performed by adding a serotonin receptor activator to regulatory T cells in vitro (e.g., regulatory T cells obtained from a subject, animal model, repository, or commercial source) and measuring the aforementioned markers to evaluate regulatory T cell differentiation. These markers can be assessed using flow cytometry, immunohistochemistry, in situ hybridization, and other assays that allow for measurement of cellular markers. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(92) The effect of a serotonin receptor activator on innervation of a lymph node or secondary lymphoid organ can be assessed by evaluation of neuronal markers in a lymph node or secondary lymphoid organ biopsy sample obtained from a human subject or animal model. A biopsy can be collected from the subject and evaluated for one or more (e.g., 1, 2, 3, 4, or 4 or more) neuronal markers selected from: Neurofilament, synapsin, synaptotagmin, or neuron specific enolase. Lymph node innervation can also be assessed using electrophysiological approaches (e.g., recording neuronal activity in a lymph node or secondary lymphoid organ in a human subject or animal model). The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(93) The effect of a serotonin receptor activator on immune cell cytokine production can be assessed by evaluation of cellular markers in an immune cell sample obtained from a human subject or animal model. A blood sample, lymph node biopsy, or tissue sample can be collected for the subject and evaluated for one or more (e.g., 1, 2, 3, 4, or 4 or more) cytokine markers selected from: pro-inflammatory cytokines (e.g., IL-1β, IL-5, IL-6, IL-8, IL-10, IL-12, IL-13, IL-18, TNFα, IFNγ, GMCSF), pro-survival cytokines (e.g., IL-2, IL-4, IL-6, IL-7, and IL-15) and anti-inflammatory cytokines (e.g., IL-4, IL-10, IL-11, IL-13, IFNα, and TGFβ). Some cytokines can function as both pro- and anti-inflammatory cytokines depending on context or indication (e.g., IL-4 is often categorized as an anti-inflammatory cytokine, but plays a pro-inflammatory role in mounting an allergic or anti-parasitic immune response). Cytokines can be also detected in the culture media of immune cells contacted with a serotonin receptor activator. Cytokines can be detected using ELISA, western blot analysis, or other methods for detecting protein levels in solution. The effect of a serotonin receptor activator can be determined by comparing results from before and after serotonin receptor activator administration.
(94) In some embodiments, a serotonin receptor activator decreases or prevents the development of TLOs to decrease local inflammation in autoimmune diseases. TLOs are highly similar to SLOs and exhibit T and B cell compartmentalization, APCs such as DCs and follicular DCs, stromal cells, and a highly organized vascular system of high endothelial venules. In some embodiments, a serotonin receptor activator decreases or prevents the development of HEVs within tertiary lymphoid organs to decrease local inflammation in autoimmune diseases. HEVs can be detected using the monoclonal antibody MECA-79.
(95) In some embodiments, a serotonin receptor activator modulates dendritic cell maturation (e.g., activation). Dendritic cell maturation can be decreased to decrease their migration from peripheral tissues into secondary lymphoid organs to inhibit T cell activation in the draining lymph node (e.g., to improve outcomes in organ transplantation or to reduce the severity of or treat autoimmune diseases).
(96) Table 4 lists additional markers and relevant assays that may be used to assess the level, function and/or activity of immune cells in the methods described herein.
(97) TABLE-US-00004 TABLE 4 ASSESSMENT OF IMMUNE CELL PHENOTYPES IMMUNE ASSOCIATED CELL CYTOKINES MARKER ASSAYS Th1 IFN-γ CD4 ELISPOT helper IL-2 CD94 In situ hybridization IL-12 CD119 Immunohisto- IL-18 (IFNγ R1) chemistry IL-27 CD183 Limiting dilution TNFα (CXCR3) Analysis TNFβ/LTα CD186 Singlec-ell PCR (CXCR6) In vivo capture assay CD191 ELISA (CCR1) Flow cytometry CD195 (CCR5) CD212 (IL- 12Rβ1&2) CD254 (RANKL) CD278 (ICOS) IL-18R MRP1 NOTCH3 TCR TIM3 Th2 IL-4 CD4 ELISPOT helper IL-2 CD30 In situ hybridization IL-6 CD119 Immunohisto- IL-33 (IFNγ R1) chemistry IL-17E (I-L25) CD184 Limiting dilution IL-31 (CXCR4) Analysis IL-3 CD185 Single-cell PCR IL-10 (CXCR5) In vivo capture IL-13 CD193 assay (CCR3) ELISA CD194 Flow cytometry (CCR4) CD197 (CCR7) CD278 (ICOS) CD294 (CRTh2) CDw198 (CCR8) IL-17RB IL-33Rα (ST2) NOTCH1 NOTCH2 TCR TIM1 Th17 TGFβ1 CD4 ELISPOT helper IL-1β CD27 In situ hybridization IL-6 CD62L Immunohisto- IL-21 CD127 (IL- chemistry IL-23 7R) Limiting dilution IL-17A CD161 Analysis IL-17F CD184 Single-cell PCR IL-22 (CXCR4) In vivo capture IL-26 CD194 assay GM-CSF (CCR4) ELISA MIP-3α CD196 Flow cytometry TNFα (CCR6) CD197 (CCR7) CD212b1 (IL-12Rβ1) CD213a1 (IL-13Rα1) CD278 (ICOS) IL-1R1 IL-21R IL-23R Treg TGFβ1 CD4 ELISPOT IL-2 CD25 In situ hybridization IL-10 CD39 Immunohisto- IL-35 CD73 chemistry CD45RO Limiting dilution CD121a (IL- Analysis 1R1) Single-cell PCR CD121b (IL- In vivo capture 1R2) assay CD127low ELISA CD134 Flow cytometry (OX40) CD137 (4- 1BB) CD152 (CTLA-4) CD357 (GITR/AITR) Foxp3 FR4 (m) GARP (activated) Helios LAP/TGFβ (activated) TIGIT Dendritic GM-CSF CD1a ELISPOT cell IFN-γ CD8 In situ hybridization IL-4 CD11c Immunohisto- GMCSF CD80 chemistry IFNα CD83 Limiting dilution IL-1α CD85 (ILT) family Analysis IL-1β CD86 Single-cell PCR IL-6 CD141 (h) In vivo capture IL-8 CD169 assay IL-10 CD172 ELISA IL-12 CD184 (CXCR4) Flow cytometry IL-15 CD197 (CCR7) IL-18 CD205 IL-23 CD206 IL-27 CD207 IP-10 CD209 M-CSF CD215 (IL-15R) RANTES (CCL5) CD282 (TLR2) TGFβ CD284 (TLR4) TNFα CD286 (TLR6) Clec Family Macro- FLT3 Ligand CD11b ELISPOT phages/ GM-CSF CD14 (mono) In situ hybridization Mono- M-CSF CD16 Immunohisto- cytes CXCL9 CD32 chemistry CXCL10 CD68 Limiting dilution CXCL11 CD85a (ILT5) Analysis G-CSF CD163 Single-cell PCR GM-CSF CD169 In vivo capture IFNβ CD195 (CCR5) assay IL-1α CD204 ELISA IL-1β CD206 Flow cytometry IL-6 CD282 (TLR2) IL-8 CD284 (TLR4) IL-10 CD286 (TLR6) IL-12p40 & p70 CD354 (Trem-1) IL-18 Clec Family IL-23 F4/80 (m) IL-27 HLADR M-CSF MIP-2α (CXCL2) RANTES (CCL5) TNFα Natural IL-2 CD16 ELISPOT Killer IL-12 CD25 In situ hybridization Cell IL-15/IL-15R CD49b Immunohisto- IL-18 CD56 (h) chemistry Granzyme B CD94 Limiting dilution IL-17A CD158 family Analysis IL-22 (KIR) (h) Single-cell PCR MIP-1α (CCL3) CD181 (CXCR1) In vivo capture MIP-1β (CCL4) CD183 (CXCR3) assay Perforin CD184 (CXCR4) ELISA RANTES (CCL5) CD186 (CXCR6) Flow cytometry TNFα CD192 (activated) CD195 (CCR5) CD197 (CCR7) CD212 (IL-12R) CD244 CD314 (NKG2D) CX3CR1 Eomes KLRG1 Ly49 family (m) NK1.1 NKG2A NKp30, NKp42 NKp44 (h) NKp46 T-bet Innate IFN-γ CD335 (MKp46) ELISPOT Lym- TNF CD336 (NKp44) In situ hybridization phoid CD94 Immunohisto- Cell 1 CD56 (NCAM) chemistry (ILC1) CD103 Limiting dilution T-bet Analysis Singel-cell PCR In vivo capture assay ELISA Flow cytometry Innate Areg CD127 ELISPOT Lym- IL-5 CRTH2 In situ hybridization phoid IL-13 ST2 (IL-33R) Immunohisto- Cell 2 RORα chemistry (ILC2) GATA3 Limiting dilution Analysis Singel-cell PCR In vivo capture assay ELISA Flow cytometry Innate CCL3 CD127 ELISPOT Lym- LTs CD117 (ckit) In situ hybridization phoid IL-22 CD335 (NKp46) Immunohisto- Cell 3 IL-17 CD336 (NKp44) chemistry (ILC3) IFN-γ IL23R Limiting dilution RORγt Analysis Single-cell PCR In vivo capture assay ELISA Flow cytometry Activated Antibodies CD19 Flow cytometry B cell/ IgM CD25 Plasma IgG CD30 cells IgD IgM IgE CD19 IgA IgG CD27 CD38 CD78 CD138 CD319
(98) TABLE-US-00005 TABLE 5 EXAMPLES OF HUMAN CHEMOKINES Alternate Systematic Human human Human receptor(s) Known name gene names Expression and their expression functions C Family XCL1 XCL1 Lymphotactin, activated CD8+ T XCR1: cross- migration SCM-1 alpha, cells and other presenting drendritic and activation of ATAC MHCI restricted T cells lymphocytes, NK cells cells XCL2 XCL2 SCM-1 beta expressed in XCR1: cross- migration activated T cells presenting drendritic and activation of cells lymphocytes, NK cells CX3C Family CX3CL1 CX3CL1 Fractalkine, brain, heart, lung, CX3CR1: migration Neurotactin, kidney, skeletal lymphocytes, and adhesion of ABCD-3 muscle and testis. monocytes lymphocytes and Up-regulated in monocytes endothelial cells and microglia by inflammation CC Family CCL1 CCL1 I-309 activated T cells CCR8: natural killer migration cells, monocytes and of monocytes, lymphocytes NK cells, DARC: erytrocytes, immature B cells endothelial and and DCs epithelial cells CCL2 CCL2 MCP-1, monocytes, CCR2: monocytes migration MCAF, HC11 macrophages and CCR4: lymphocytes of monocytes dendritic cells, CCR11: unkown and basophils activated NK cells D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL3 CCL3 MIP-1 alpha, T cells, B cells, and CCR1: lymphocytes, adhesion LD78 alpha, monocytes after monocytes, airway of lymphocytes GOS19, antigen or mitogen smooth muscle cells Pat464 stimulation CCR4: lymphocytes CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia D6: lymphocytes, lymphatic endothelial cells, macrophages CCL3L1 CCL3L1 LD78 beta Unknown CCR1: lymphocytes, migration monocytes, airway of lymphocytes smooth muscle cells and monocytes CCR3: eosinophils, basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia D6: lymphocytes, lymphatic endothelial cells, macrophages CCL3L3 CCL3L3 LD78 beta Unknown CCR1: lymphocytes, migration monocytes, airway of lymphocytes smooth muscle cells and monocytes CCR3: eosinophils, basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCL4 CCL4 MIP-1 beta, macrophages, CCR1: lymphocytes, migration AT744.1, dendritic cells monocytes, airway and adhesion of ACT-2, G-26, smooth muscle cells lymphocytes, HC21, H400, CCR5: T cells, regulatory T MAD-5, LAG- macrophages, cells, NK cells, 1 dendritic cells, monocyrtes eosinophils and microglia CCR8: natural killer cells, monocytes and lymphocytes D6: lymphocytes, lymphatic endothelial cells, macrophages CCL4L1 CCL4L1 AT744.2 macrophages, CCR1: lymphocytes, CCR1 dendritic cells monocytes, airway and CCR5 smooth muscle cells expressing cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCL4L2 CCL4L2 macrophages, CCR1: lymphocytes, CCR1 dendritic cells monocytes, airway and CCR5 smooth muscle cells expressing cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCL5 CCL5 RANTES T cells, CCR1: lymphocytes, migration macrophages, monocytes, airway of monocytes, platelets, synovial smooth muscle cells memory T helper fibroblasts, tubular CCR3: eosinophils, cells and epithelium, certain basophils, Th2 cells, eosinophils, types of tumor cells CD34+ hematopoetic causes the progenitors, release of keratinocytes, mast histamine from cells basophils and CCR4: lymphocytes activates CCR5: T cells, eosinophils macrophages, dendritic cells, eosinophils and microglia D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL7 CCL7 MCP-3 macrophages, CCR1: lymphocytes, migration certain types of monocytes, airway of monocytes, tumor cells smooth muscle cells activation of CCR2: monocytes macrophages CCR3: eosinophils, basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL8 CCL8 MCP-2, HC14 fibroblasts, CCR1: lymphocytes, migration endothelial cells monocytes, airway of monocytes, smooth muscle cells lymphocytes, CCR2: monocytes basophils and CCR3: eosinophils, eosinophils basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCR11: unkown D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL11 CCL11 Eotaxin lung epithelial cells, CCR3: eosinophils, migration pleural mesothelial basophils, Th2 cells, and activation of cells, bronchial CD34+ hematopoetic inflammatory airway epithelial progenitors, leukocytes, cells, smooth keratinocytes, mast particularly muscle cells cells eosinophils CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL12 stromal cells in lung CCR2: monocytes migration and secondary and activation of lymphoid organs monocytes CCL13 CCL13 MCP-4, CK synovial fibroblasts, CCR1: lymphocytes, migration beta 10, chondrocytes monocytes, airway of eosinophils, NCC-1 smooth muscle cells monocytes and T CCR2: monocytes lymphocytes CCR3: eosinophils, basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCR11: unkown D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL14 CCL14 HCC-1, spleen, bone CCR1: lymphocytes, activation MCIF, CK marrow, liver, monocytes, airway of monocytes beta 1, NCC- muscle and gut smooth muscle cells 2 CCR3: eosinophils, basophils, Th2 cells, CD34+ hematopoetic progenitors, keratinocytes, mast cells CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL15 CCL15 MIP-1 delta, airway smooth CCR1: lymphocytes, migration LKN-1, HCC- muscle cells, lung monocytes, airway of monocytes 2, MIP-5, leukocytes, alveolar smooth muscle cells and eosinophils, NCC-3 macrophages, CCR3: eosinophils, proliferation of basophils basophils, Th2 cells, CD34 myeloid CD34+ hematopoetic progenitor cells progenitors, keratinocytes, mast cells CCL16 CCL16 HCC-4, LEC, liver, thymus, and CCR1: lymphocytes, migration ILINCK, spleen monocytes, airway of lymphocytes NCC-4, LMC, smooth muscle cells and monocytes CK beta 12 CCR2: monocytes CCR5: T cells, macrophages, dendritic cells, eosinophils and microglia CCR8: natural killer cells, monocytes and lymphocytes DARC: erytrocytes, endothelial and epithelial cells H4: bone marrow, eosinophils, T-cells, dendritic cells, monocytes, mast cells, neutrophil CCL17 CCL17 TARC, constitutively CCR4: lymphocytes Migration ABCD-2 expressed in CCR8: natural killer and activation of thymus, dendritic cells, monocytes and T cells cells, keratinocytes lymphocytes D6: lymphocytes, lymphatic endothelial cells, macrophages DARC: erytrocytes, endothelial and epithelial cells CCL18 CCL18 PARC, DC- dendritic cells, CCR8: natural killer migration CK1, AMAC- monocytes, and cells, monocytes and of naive and 1, CK beta 7, macrophages lymphocytes regulatory MIP-4 PITPNM3: breast lymphocytes, cancer cells dendritic cells DARC: erytrocytes, endothelial and epithelial cells CCL19 CCL19 MIP-3 beta, fibroblastic reticular CCR7: lymphocytes migration ELC, Exodus- cells, dendritic cells (mainly naive and of naive and 3, CK beta 11 memory), mature memory dendritic cells lymphocytes and CCR11: unkown mature dendritic CCRL2: neutrophils, cells monocytes CCL20 CCL20 MIP-3 alpha, epidermis CCR6: immature migration LARC, (keratinocytes), dendritic cells and of lymphocytes, Exodus-1, lymphocytes memory T cells DCs and ST38, CK neutrophils beta 4 CCL21 CCL21 6Ckine, Stromal cells, CCR7: lymphocytes migration Exodus-2, lymphatic (mainly naive and of lymphocytes SLC, TCA-4, endothelial cells, memory), mature homing to CK beta 9 fibroblastic reticular dendritic cells secondary cells, dendritic cells CCR11: unkown lymphoid organs, induces integrin- mediated lymphocyte adhesion CCL22 CCL22 MDC Macrophages CCR4: lymphocytes migration D6: lymphocytes, of NK cells, lymphatic endothelial chronically cells, macrophages activated T cells, monocytes and DCs CCL23 CCL23 MPIF-1, CK Monocytes CCR1: lymphocytes, migration beta 8, CK monocytes of monocytes, beta 8-1, FPRL-1: monocytes, resting T cells MIP-3 mast cells and neutrophils CCL24 CCL24 Eotaxin-2, lung tissue CCR3: eosinophils, migration MPIF-2, CK basophils, Th2 cells, of basophils beta 6 CD34+ hematopoetic progenitors, keratinocytes, mast cells CCL25 CCL25 TECK, CK thymic dendritic cells CCR9: T lymphocytes migration beta 15 and mucosal of small intestine of dendritic cells, epithelial cells thymocytes and activated macrophages CCL26 CCL26 Eotaxin-3, heart, lung and CCR3: eosinophils, migration MIP-4 alpha, ovary and in basophils, Th2 cells, of eosinophils IMAC, TSC-1 endothelial cells CD34+ hematopoetic and basophils stimulated with IL4 progenitors, keratinocytes, mast cells CX3CR1: lymphocytes, monocytes CCL27 CCL27 CTACK, ILC, Keratinocytes CCR10: melanocytes, migration PESKY, plasma cells and skin- of memory T ESKINE homing T cells cells CCL28 CCL28 MEC columnar epithelial CCR3: eosinophils, migration cells in the gut, lung, basophils, Th2 T cells, of lymphocytes breast and the CD34+ hematopoetic and eosinophils salivary glands progenitors, keratinocytes, mast cells CCR10: melanocytes, plasma cells and skin- homing T cells CXC Family CXCL1 CXCL1 GRO alpha, mammary, CXCR2 (IL8RB): migration MGSA, fibroblasts, neutrophils of neutrophils GRO1, NAP- mammary epithelial DARC: erytrocytes, 3 cells, endothelial endothelial and cells, activated, epithelial cells monocytes, macrophages and neutrophils CXCL2 CXCL2 GRO beta, monocytes, CXCR2 (IL8RB): migration MIP-2 alpha, macrophages neutrophils and activation of GRO2 DARC: erytrocytes, neutrophils, endothelial and basophils, epithelial cells hematopoietic stem cells CXCL3 CXCL3 GRO gamma, smooth muscle CXCR2 (IL8RB): migration MIP-2 beta, cells, epithelial cells neutrophils and activation of GRO3 DARC: erytrocytes, neutrophils endothelial and epithelial cells CXCL4 PF4 PF4 activated platelets, CXCR3 (CD183b): T migration megakaryocytes, cells, NK cells of neutrophils leukocytes, CXCR3-B: T cells, NK and fibroblasts, endothelial cells cells inhibiting DARC: erytrocytes, endothelial cell endothelial and proliferation and epithelial cells chemotaxis CXCL4L1 PF4V1 PF4V1 smooth muscle CXCR3 (CD183b): T inhibiting cells, T cells, and cells, NK cells endothelial cell platelets CXCR3-B: T cells, NK proliferation and cells chemotaxis CXCL5 CXCL5 ENA-78 fibroblasts, epithelial CXCR2 (IL8RB): migration cells, eosinophils neutrophils and activation of DARC: erytrocytes, neutrophils endothelial and epithelial cells CXCL6 CXCL6 GCP-2 fibroblasts, epithelial CXCR1 (IL8RA): migration cells neutrophils of neutrophils CXCR2 (IL8RB): neutrophils DARC: erytrocytes, endothelial and epithelial cells CXCL7 PPBP NAP-2, activated platelets CXCR1 (IL8RA): migration CTAPIII, neutrophils of neutrophils beta-TG CXCR2 (IL8RB): neutrophils CXCL8 IL8 IL-8, NAP-1, macrophages, CXCR1 (IL8RA): migration MDNCF, epithelial cells, neutrophils of neutrophils, GCP-1 airway smooth CXCR2 (IL8RB): basophils, and T- muscle cells, neutrophils cells, and endothelial cells DARC: erytrocytes, angiogenic factor endothelial and epithelial cells CXCL9 CXCL9 MIG, CRG-10 monocytes, CXCR3 (CD183b): T migration macrophages and cells, NK cells of Th1 endothelial cells CXCR3-B: T cells, NK lymphocytes, cells angiogenic factor DARC: erytrocytes, endothelial and epithelial cells CXCL10 CXCL10 IP-10 neutrophils, CXCR3 (CD183b): T migration hepatocytes, cells, NK cells of CD4+ T cells endothelial cells and CXCR3-B: T cells, NK keratinocytes cells DARC: erytrocytes, endothelial and epithelial cells CXCL11 CXCL11 I-TAC, beta- peripheral blood CXCR3 (CD183b): T migration R1, H174, IP- leukocytes, cells, NK cells of interleukin- 9 pancreas and liver CXCR7 (ACKR3): activated T cells astrocytes and at tumor cells and tumor- but not moderate levels in associated blood unstimulated T thymus, spleen and endothelium cells, neutrophils lung DARC: erytrocytes, or monocytes. endothelial and epithelial cells CXCL12 CXCL12 SDF-1, PBSF ubiquitously CXCR4: brain, heart, migration expressed in many lymphocytes, HSCs, of lymphocytes tissues and cell blood endothelial cells and types and umbilical cord hepatopoietic endothelial cell stem cells, CXCR7 (ACKR3): angiogenic factor tumor cells and tumor- associated blood endothelium CXCL13 CXCL13 BCA-1, BLC follicles of the CXCR3 (CD183b): T migration spleen, lymph cells, NK cells of B cells nodes, and Peyer's CXCR5: Burkitt's patches lymphoma, lymph node follicules, spleen DARC: erytrocytes, endothelial and epithelial cells CXCL14 CXCL14 BRAK, BMAC Fibroblasts unknown migration of monocytes, NK cells, DCs CXCL16 CXCL16 SR-PSOX DCs CXCR6: T cells migration of several subsets of T cells and NKT cells CXCL17 CXCL17 DMC, VCC-1 Lung and tumor unknown migration tissue of DCs and monocytes
(99) TABLE-US-00006 TABLE 6 EXAMPLES OF HUMAN IMMUNE CELL TRAFFICKING MOLECULES Trafficking molecule expressing Function in Trafficking or presenting Leukocyte the extravasation molecule cells ligand cascade P-selectin Blood PSGL-1, Tethering/Rolling during endothelial L-selectin, extravasation cascade cell CD44 E-selectin Blood Glycoprotein, Tethering/Rolling during endothelial glycolipid, extravasation cascade cell PSGL-1 PNAd Blood L-selectin Tethering/Rolling during endothelial extravasation cascade cell MAdCAM Blood L-selectin, Tethering/Rolling, arrest endothelial integrins during extravasation cell cascade VCAM-1 Blood Integrins (e.g. Tethering/Rolling, arrest endothelial VLA-4) during extravasation cell cascade Chemokines Blood GPCRs Integrin activation, endothelial allowing binding of cell cell adhesion molecules and arrest ICAM-1 Blood Integrins (e.g. Arrest during endothelial LFA-1, extravasation cascade cell Mac-1) ICAM-2 Blood Integrins (e.g. Arrest during endothelial LFA-1, extravasation cascade cell Mac-1) PECAM1 Blood Integrins (e.g. Transmigration (CD31) endothelial alpha v beta 3), cell PECAM1 JAM-A/-B/- Blood Integrins (e.g. Transmigration C endothelial LFA-1, Mac-1, cell VLA-4) ESAM Blood unknown Transmigration endothelial cell CD99 Blood CD99 Transmigration endothelial cell CD99L2 Blood possibly Transmigration endothelial CD99L cell VE-cadherin Blood None Transmigration endothelial cell PVR Blood DNAM1 Transmigration endothelial cell S1P Lymphatic S1P receptor 1 Entry into afferent and endothelial (S1P1) efferent lymphatics (in cell peripheral or SLOs respectively)
Inflammatory and Autoimmune Conditions
(100) The methods described herein can be used to treat an inflammatory or autoimmune condition or disease in a subject in need thereof by administering an effective amount of a serotonin receptor activator to the subject. The methods described herein can further include a step of identifying (e.g., diagnosing) a subject who has an inflammatory or autoimmune condition, e.g., an inflammatory or autoimmune condition described herein. The method can include administering locally to the subject a serotonin receptor activator described herein in a dose (e.g., effective amount) and for a time sufficient to treat the autoimmune or inflammatory condition or disease.
(101) The methods described herein can be used to inhibit an immune response in a subject in need thereof, e.g., the subject has an autoimmune condition and is in need of inhibiting an immune response against self- or auto-antibodies (e.g., the subject has Graves' disease, systemic lupus erythematosus (SLE or lupus), type 1 diabetes, multiple sclerosis (MS), plaque psoriasis, rheumatoid arthritis (RA) or another autoimmune condition described herein). The methods described herein can also include a step of selecting a subject in need of inhibiting an immune response, e.g., selecting a subject who has or who has been identified to have an inflammatory or autoimmune condition.
(102) Types of Inflammatory and Autoimmune Conditions
(103) In the methods described herein, the condition may be selected from: acute disseminated encephalomyelitis (ADEM); acute necrotizing hemorrhagic leukoencephalitis; Addison's disease; adjuvant-induced arthritis; agammaglobulinemia; alopecia areata; amyloidosis; ankylosing spondylitis; anti-GBM/anti-TBM nephritis; antiphospholipid syndrome (APS); autoimmune angioedema; autoimmune aplastic anemia; autoimmune dysautonomia; autoimmune gastric atrophy; autoimmune hemolytic anemia; autoimmune hepatitis; autoimmune hyperlipidemia; autoimmune immunodeficiency; autoimmune inner ear disease (AIED); autoimmune myocarditis; autoimmune oophoritis; autoimmune pancreatitis; autoimmune retinopathy; autoimmune thrombocytopenic purpura (ATP); autoimmune thyroid disease; autoimmune urticarial; axonal & neuronal neuropathies; Balo disease; Behcet's disease; bullous pemphigoid; cardiomyopathy; Castleman disease; celiac disease; Chagas disease; chronic inflammatory demyelinating polyneuropathy (CIDP); chronic recurrent multifocal ostomyelitis (CRMO); Churg-Strauss syndrome; cicatricial pemphigoid/benign mucosal pemphigoid; Crohn's disease; Cogan syndrome; collagen-induced arthritis; cold agglutinin disease; congenital heart block; coxsackie myocarditis; CREST disease; essential mixed cryoglobulinemia; demyelinating neuropathies; dermatitis herpetiformis; dermatomyositis; Devic's disease (neuromyelitis optica); discoid lupus; Dressler's syndrome; endometriosis; eosinophilic esophagitis; eosinophilic fasciitis; erythema nodosum experimental allergic encephalomyelitis; experimental autoimmune encephalomyelitis; Evans syndrome; fibromyalgia; fibrosing alveolitis; giant cell arteritis (temporal arteritis); giant cell myocarditis; glomerulonephritis; Goodpasture's syndrome; granulomatosis with polyangiitis (GPA) (formerly called Wegener's granulomatosis); Graves' disease; Guillain-Barre syndrome; Hashimoto's encephalitis; Hashimoto's thyroiditis; hemolytic anemia; Henoch-Schonlein purpura; herpes gestationis; hypogammaglobulinemia; idiopathic thrombocytopenic purpura (ITP); IgA nephropathy; IgG4-related sclerosing disease; immunoregulatory lipoproteins; inclusion body myositis; interstitial cystitis; inflammatory bowel disease; juvenile arthritis; juvenile oligoarthritis; juvenile diabetes (type 1 diabetes); juvenile myositis; Kawasaki syndrome; Lambert-Eaton syndrome; leukocytoclastic vasculitis; lichen planus; lichen sclerosus; ligneous conjunctivitis; linear IgA disease (LAD); lupus (SLE); Lyme disease, chronic; Meniere's disease; microscopic polyangiitis; mixed connective tissue disease (MCTD); Mooren's ulcer; Mucha-Habermann disease; multiple sclerosis; myasthenia gravis; myositis; arcolepsy; neuromyelitis optica (Devic's); neutropenia; non-obese diabetes; ocular cicatricial pemphigoid; optic neuritis; palindromic rheumatism; PANDAS (pediatric autoimmune neuropsychiatric disorders associated with streptococcus); paraneoplastic cerebellar degeneration; paroxysmal nocturnal hemoglobinuria (PNH); Parry Romberg syndrome; Parsonnage-Turner syndrome; pars planitis (peripheral uveitis); pemphigus; pemphigus vulgaris; peripheral neuropathy; perivenous encephalomyelitis; pernicious anemia; POEMS syndrome; polyarteritis nodosa; type I, II, & III autoimmune polyglandular syndromes; polymyalgia rheumatic; polymyositis; postmyocardial infarction syndrome; postpericardiotomy syndrome; progesterone dermatitis; primary biliary cirrhosis; primary sclerosing cholangitis; psoriasis; plaque psoriasis; psoriatic arthritis; idiopathic pulmonary fibrosis; pyoderma gangrenosum; pure red cell aplasia; Raynauds phenomenon; reactive Arthritis; reflex sympathetic dystrophy; Reiter's syndrome; relapsing polychondritis; restless legs syndrome; retroperitoneal fibrosis; rheumatic fever; rheumatoid arthritis; sarcoidosis; Schmidt syndrome; scleritis; scleroderma; sclerosing cholangitis; sclerosing sialadenitis; Sjogren's syndrome; sperm & testicular autoimmunity; stiff person syndrome; subacute bacterial endocarditis (SBE); Susac's syndrome; sympathetic ophthalmia; systemic lupus erythematosus (SLE); systemic sclerosis; Takayasu's arteritis; temporal arteritis/giant cell arteritis; thrombocytopenic purpura (TTP); Tolosa-Hunt syndrome; transverse myelitis; type 1 diabetes; ulcerative colitis; undifferentiated connective tissue disease (UCTD); uveitis; vasculitis; vesiculobullous dermatosis; vitiligo; Wegener's granulomatosis (now termed granulomatosis with polyangiitis (GPA).
(104) In some embodiments, the inflammatory or autoimmune disease or condition is an IL-8-associated autoimmune disease or condition in which anti-IL-8 therapies have been tested (e.g., anti-IL-8 antibodies) or are in clinical development, in which agents used to treat the disease or condition have been found to reduce IL-8, or in which IL-8 has been found to be elevated. IL-8-associated autoimmune diseases or conditions in which anti-IL-8 therapies have been tested or are in clinical development, or in which agents used to treat the disease or condition have been found to reduce IL-8 include collagen-induced arthritis, coxsackie myocarditis, glomerulonephritis, pemphigus vulgaris, psoriasis, rheumatoid arthritis, uveitis, scleroderma, and dermatitis. Inflammatory or autoimmune diseases or conditions that are associated with elevated levels of IL-8 include alopecia areata, amyloidosis, ankylosing spondylitis, antiphospholipid syndrome, autoimmune aplastic anemia, autoimmune hepatitis, autoimmune immunodeficiency, autoimmune pancreatitis, autoimmune thyroid disease, autoimmune urticarial, axonal & neuronal neuropathies, Behcet's disease, bullous pemphigoid, cardiomyopathy, celiac disease, chronic inflammatory demyelinating polyneuropathy, Crohn's disease, chronic recurrent multifocal osteomyelitis, Churg-Strauss syndrome, cicatricial pemphigoid/benign mucosal pemphigoid, CREST disease, demyelinating neuropathies, dermatitis herpetiformis, dermatomyositis, Devic's disease, endometriosis, eosinophilic esophagitis, fibromyalgia, fibrosing alveolitis, giant cell arteritis (temporal arteritis), granulomatosis with polyangiitis, Graves' disease, Guillain-Barre syndrome, hemolytic anemia, Henoch-Schonlein purpura, hypogammaglobulinemia, IgA nephropathy, inclusion body myositis, inflammatory bowel disease, juvenile arthritis, Juvenile diabetes (Type 1 diabetes), juvenile myositis, Kawasaki syndrome, leukocytoclastic vasculitis, lichen planus, lupus (SLE), Lyme disease, chronic, Mooren's ulcer, multiple sclerosis, myasthenia gravis, myositis, narcolepsy, neutropenia, ocular cicatricial pemphigoid, optic neuritis, PANDAS, pars planitis, pemphigus, peripheral neuropathy, perivenous encephalomyelitis, POEMS syndrome, polyarteritis nodosa, polymyalgia rheumatic, polymyositis, primary biliary cirrhosis, primary sclerosing cholangitis, psoriatic arthritis, idiopathic pulmonary fibrosis, pyoderma gangrenosum, relapsing polychondritis, rheumatic fever, sarcoidosis, Sjogren's syndrome, sperm & testicular autoimmunity, subacute bacterial endocarditis, systemic sclerosis, Takayasu's arteritis, transverse myelitis, ulcerative colitis, vasculitis, vesiculobullous dermatosis, and vitiligo.
(105) Serotonin receptor activators described herein can be administered in combination with a second therapeutic agent for treatment of an inflammatory or autoimmune disease or condition. Additional therapeutic agents include, 6-mercaptopurine, 6-thioguanine, abatacept, adalimumab, alemtuzumab (Lemtrada), aminosalicylates (5-aminoalicylic acid, sulfasalazine, mesalamine, balsalazide, olsalazine), antibiotics, anti-histamines, Anti-TNFα (infliximab, adalimumab, certolizumab pegol, natalizumab) Ustekinumab), azathioprine, belimumab, beta interferon, calcineurin inhibitors, certolizumab, corticosteroids (prednisone, methylprednisolone), cromolyn, cyclosporin A, cyclosporine, dimethyl fumarate (tecfidera), etanercept, fingolimod (Gilenya), fumaric acid esters, glatiramer acetate (Copaxone), golimumab, hydroxyurea, IFNγ, IL-11, infliximab, leflunomide, leukotriene receptor antagonist, long-acting beta2 agonist, methotrexate, mitoxantrone, mycophenolate mofetil, natalizumab (tysabri), NSAIDs, ocrelizumab, pimecrolimus, probiotics (VSL #3), retinoids, rituximab, salicylic acid, short-acting beta2 agonist, sulfasalazine, tacrolimus, teriflunomide (Aubagio), theophylline, tocilizumab, ustekinumab (anti-IL12/IL23), and vedolizumab (Anti alpha3 beta7 integrin).
(106) Neuromodulatory Combination Therapies
(107) Neurotransmission Modulators
(108) In some embodiments, the serotonin receptor activator is administered in combination with a neurotransmission modulator (e.g., an agent that increases or decreases neurotransmission). A neurotransmission modulator can be used to modulate neural activity in a lymph node or site of inflammation that is innervated by nerves or to modulate immune cells that express neurotransmitter receptors. For example, in some embodiments, the neurotransmission modulator is a neurotransmitter or neurotransmitter receptor listed in Table 7 or 8, or an agonist or antagonist listed in Tables 9A-9J for a corresponding neurotransmitter pathway member. In some embodiments, the neurotransmission modulator is a neurotransmission modulator listed in Table 10. Neurotransmission modulators that increase neurotransmission include neurotransmitters and neurotransmitter receptors listed in Tables 7 and 8 and analogs thereof, and neurotransmitter agonists (e.g., small molecules that agonize a neurotransmitter receptor listed in Table 7). Exemplary agonists are listed in Tables 9A-9J. In some embodiments, neurotransmission is increased via administration, local delivery, or stabilization of neurotransmitters (e.g., ligands listed in Tables 7 or 8). Neurotransmission modulators that increase neurotransmission also include agents that increase neurotransmitter synthesis or release (e.g., agents that increase the activity of a biosynthetic protein encoded by a gene in Table 7 via stabilization, overexpression, or upregulation, or agents that increase the activity of a synaptic or vesicular protein via stabilization, overexpression, or upregulation), prevent neurotransmitter reuptake or degradation (e.g., agents that block or antagonize transporters that remove neurotransmitter from the synaptic cleft), increase neurotransmitter receptor activity (e.g., agents that increase the activity of a signaling protein encoded by a gene in Table 7 via stabilization, overexpression, agonism, or upregulation, or agents that upregulate, agonize, or stabilize a neurotransmitter receptor listed in Table 7), increase neurotransmitter receptor synthesis or membrane insertion, decrease neurotransmitter degradation, and regulate neurotransmitter receptor conformation (e.g., agents that bind to a receptor and keep it in an “open” or “primed” conformation). In some embodiments, the neurotransmitter receptor is a channel, the activity of which can be increased by agonizing, opening, stabilizing, or overexpressing the channel.
(109) Neurotransmission modulators can increase neurotransmission by 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98% or more. Exemplary neurotransmission modulators are listed in Table 10. Neurotransmission modulators that decrease neurotransmission include neurotransmitter antagonists (e.g., small molecules that antagonize a neurotransmitter receptor listed in Table 7). Exemplary antagonists are listed in Tables 9A-9J. Neurotransmission modulators that decrease neurotransmission also include agents that decrease neurotransmitter synthesis or release (e.g., agents that decrease the activity of a biosynthetic protein encoded by a gene in Table 7 via inhibition or downregulation, or agents that decrease the activity of a synaptic or vesicular protein via blocking, disrupting, downregulating, or antagonizing the protein), increase neurotransmitter reuptake or degradation (e.g., agents that agonize, open, or stabilize transporters that remove neurotransmitter from the synaptic cleft), decrease neurotransmitter receptor activity (e.g., agents that decrease the activity of a signaling protein encoded by a gene in Table 7 or via blocking or antagonizing the protein, or agents that block, antagonize, or downregulate a neurotransmitter receptor listed in Table 7), decrease neurotransmitter receptor synthesis or membrane insertion, increase neurotransmitter degradation, regulate neurotransmitter receptor conformation (e.g., agents that bind to a receptor and keep it in a “closed” or “inactive” conformation), and disrupt the pre- or postsynaptic machinery (e.g., agents that block or disrupt a structural protein, or agents that block, disrupt, downregulate, or antagonize a synaptic or vesicular protein). In some embodiments, the neurotransmitter receptor is a channel (e.g., a ligand or voltage gated ion channel), the activity of which can be decreased by blockade, antagonism, or inverse agonism of the channel. Neurotransmission modulators that decrease neurotransmission further include agents that sequester, block, antagonize, or degrade a neurotransmitter listed in Tables 7 or 8. Neurotransmission modulators that decrease or block neurotransmission include antibodies that bind to or block the function of neurotransmitters, neurotransmitter receptor antagonists, and toxins that disrupt synaptic release. Neurotransmission modulators can decrease neurotransmission by 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98% or more. Neurotransmission modulator can be administered in any of the modalities described herein (e.g., antibody, small molecule, nucleic acid, polypeptide, or viral vector).
(110) TABLE-US-00007 TABLE 7 NEUROTRANSMITTER GENES & PATHWAYS Accession Entrez Gene Pathway Type Number Gene ID ABAT Neurotransmitter Biosynthesis P80404 18 ACHE Neurotransmitter Biosynthesis P22303 43 ADORA2A Neurotransmitter Receptor P29274 135 ADORA2B Neurotransmitter Receptor P29275 136 Adra1a Adrenergic/ Receptor P35348 148 Neurotransmitter Adra1b Adrenergic/ Receptor P35368 147 Neurotransmitter Adra1d Adrenergic/ Receptor P25100 146 Neurotransmitter Adra2a Adrenergic/ Receptor P08913 150 Neurotransmitter Adra2b Adrenergic/ Receptor P18089 151 Neurotransmitter Adra2c Adrenergic/ Receptor P18825 152 Neurotransmitter Adrb1 Adrenergic/ Receptor P08588 153 Neurotransmitter Adrb2 Adrenergic/ Receptor P07550 154 Neurotransmitter Adrb3 Adrenergic/ Receptor P13945 155 Neurotransmitter Adrbk1 Adrenergic Kinase P25098 156 Adrbk2 Adrenergic Kinase P35626 157 BACE1 Neurotransmitter Biosynthesis P56817 23621 BCHE Neurotransmitter Biosynthesis P06276 590 BRS3 Neuromodulator Receptor P32247 P32247 C6orf89 Neuromodulator Receptor Q6UWU4 221477 CHAT Neurotransmitter Biosynthesis P28329 1103 CHRFAM7A Neurotransmitter Receptor Q494W8 89832 Chrm1 Cholinergic/ Receptor P11229 1128 Neurotransmitter Chrm2 Cholinergic/ Receptor P08172 1129 Neurotransmitter Chrm3 Cholinergic/ Receptor P20309 1131 Neurotransmitter Chrm4 Cholinergic/ Receptor P08173 1132 Neurotransmitter Chrm5 Cholinergic/ Receptor P08912 1133 Neurotransmitter Chrna1 Cholinergic/ Receptor P02708 1134 Neurotransmitter Chrna10 Cholinergic/ Receptor Q9GZZ6 57053 Neurotransmitter Chrna2 Cholinergic/ Receptor Q15822 1135 Neurotransmitter Chrna3 Cholinergic/ Receptor P32297 1136 Neurotransmitter Chrna4 Cholinergic/ Receptor P43681 1137 Neurotransmitter Chrna5 Cholinergic/ Receptor P30532 1138 Neurotransmitter Chrna6 Cholinergic/ Receptor Q15825 8973 Neurotransmitter Chrna7 Cholinergic/ Receptor P36544 1139 Neurotransmitter Chrna9 Cholinergic/ Receptor Q9UGM1 55584 Neurotransmitter Chrnb1 Cholinergic/ Receptor P11230 1140 Neurotransmitter Chrnb2 Cholinergic/ Receptor P17787 1141 Neurotransmitter Chrnb3 Cholinergic/ Receptor Q05901 1142 Neurotransmitter Chrnb4 Cholinergic/ Receptor P30926 1143 Neurotransmitter Chrnd Cholinergic/ Receptor Q07001 1144 Neurotransmitter Chrne Cholinergic/ Receptor Q04844 1145 Neurotransmitter Chrng Cholinergic/ Receptor P07510 1146 Neurotransmitter CNR1 Cannabinoid/ Receptor P21554 1268 Neurotransmitter CNR2 Cannabinoid/ Receptor P34972 1269 Neurotransmitter CNRIP1 Neurotransmitter Receptor Q96F85 25927 COMT Neurotransmitter Biosynthesis P21964 1312 CPA4 Neurotransmitter Biosynthesis Q9UI42 51200 CPE Neuropeptide/ Biosynthesis P16870 1363 Neurotransmitter CREM Neurotransmitter Signaling Q03060 1390 DAGLA Neurotransmitter Biosynthesis Q9Y4D2 747 (Cannabinoid) DAGLB Neurotransmitter Biosynthesis Q8NCG7 221955 (Cannabinoid) DBH Neurotransmitter Biosynthesis P09172 1621 DDC Neurotransmitter Biosynthesis P20711 1644 DGKI Neurotransmitter Biosynthesis O75912 9162 DOPO Dopaminergic Receptor P09172 1621 DPP4 Neurotransmitter Biosynthesis P27487 1803 Drd1 Dopaminergic/ Receptor P21728 1812 Neurotransmitter Drd2 Dopaminergic/ Receptor P14416 1813 Neurotransmitter Drd3 Dopaminergic/ Receptor P35462 1814 Neurotransmitter Drd4 Dopaminergic/ Receptor P21917 1815 Neurotransmitter Drd5 Dopaminergic/ Receptor P21918 1816 Neurotransmitter ECEL1 Neurotransmitter Biosynthesis O95672 9427 FAAH Neurotransmitter Biosynthesis O00519 2166 FNTA Neurotransmitter Signaling P49354 2339 GABARAP Neurotransmitter Receptor O95166 11337 GABARAPL1 Amine Receptor Q9H0R8 23710 Neuromodulator GABARAPL2 Amine Receptor P60520 11345 Neuromodulator GABBR1 Neurotransmitter Receptor Q9UBS5 2550 GABBR2 Amine Receptor O75899 9568 Neuromodulator GABRA1 Neurotransmitter Receptor P14867 2554 GABRA2 Neurotransmitter Receptor P47869 2555 GABRA3 Neurotransmitter Receptor P34903 2556 GABRA4 Neurotransmitter Receptor P48169 2557 GABRA5 Neurotransmitter Receptor P31644 2558 GABRA6 Neurotransmitter Receptor Q16445 2559 GABRB1 Neurotransmitter Receptor P18505 2560 GABRB2 Neurotransmitter Receptor P47870 2561 GABRB3 Neurotransmitter Receptor P28472 2562 GABRD Neurotransmitter Receptor O14764 2563 GABRE Neurotransmitter Receptor P78334 2564 GABRG1 Neurotransmitter Receptor Q8N1C3 2565 GABRG2 Neurotransmitter Receptor P18507 2566 GABRG3 Neurotransmitter Receptor Q99928 2567 GABRP Neurotransmitter Receptor O00591 2568 GABRQ Neurotransmitter Receptor Q9UN88 55879 GABRR1 Neurotransmitter Receptor P24046 2569 GABRR2 Neurotransmitter Receptor P28476 2570 GABRR3 Neurotransmitter Receptor A8MPY1 200959 GAD1 Neurotransmitter Biosynthesis Q99259 2571 GAD2 Neurotransmitter Biosynthesis Q05329 2572 GCHFR Neurotransmitter Biosynthesis P30047 2644 GLRA1 Neurotransmitter Receptor P23415 2741 GLRA2 Neurotransmitter Receptor P23416 2742 GLRA3 Neurotransmitter Receptor O75311 8001 GLRA4 Neurotransmitter Receptor Q5JXX5 441509 GLRB Neurotransmitter Receptor P48167 2743 GLS Neurotransmitter Biosynthesis O94925 2744 GLS2 Neurotransmitter Biosynthesis Q9UI32 27165 GluA1 (GluR1) Amine Receptor P42261 2890 Neuromodulator GluK1 (GluR5) Amine Receptor P39086 2897 Neuromodulator GLUL Neurotransmitter Biosynthesis P15104 2752 GluN1(NR1) Amine Receptor Q05586 2902 Neuromodulator GNMT Neurotransmitter Biosynthesis Q14749 27232 GPER1 Neurotransmitter Receptor Q99527 2852 GPR1 Neurotransmitter Receptor P46091 2825 GPR139 Neurotransmitter Receptor Q6DWJ6 124274 GPR143 Neurotransmitter Receptor P51810 4935 GPR149 Neurotransmitter Receptor Q86SP6 344758 GPR18 Neurotransmitter Receptor Q14330 2841 GPR21 Neurotransmitter Receptor Q99679 2844 GPR26 Neurotransmitter Receptor Q8NDV2 2849 GPR3 Neurotransmitter Receptor P46089 2827 GPR35 Neurotransmitter Receptor Q9H097 2859 GPR52 Neurotransmitter Receptor Q9Y2T5 9293 GPR55 Neurotransmitter Receptor Q9Y2T6 9290 GPR78 Neurotransmitter Receptor Q96P69 27201 GPR83 Neurotransmitter Receptor Q9NYM4 10888 GPR84 Neurotransmitter Receptor Q9NQS5 53831 GPRASP1 Neurotransmitter Receptor Q5JY77 9737 GPR50 Amine Receptor Q13585 9248 Neuromodulator GRIA1 Neurotransmitter Receptor P42261 2890 GRIA2 Neurotransmitter Receptor P42262 2891 GRIA3 Neurotransmitter Receptor P42263 2892 GRIA4 Neurotransmitter Receptor P48058 2893 GRID1 Neurotransmitter Receptor Q9ULKO 2894 GRI D2 Neurotransmitter Receptor Q43424 2895 GRIK1 Neurotransmitter Receptor P39086 2897 GRIK2 Neurotransmitter Receptor Q13002 2898 GRIK3 Neurotransmitter Receptor Q13003 2899 GRIK4 Neurotransmitter Receptor Q16099 2900 GRIK5 Neurotransmitter Receptor Q16478 2901 GRIN1 Neurotransmitter Receptor Q05586 2902 GRIN2A Neurotransmitter Receptor Q12879 2903 GRIN2B Neurotransmitter Receptor Q13224 2904 GRIN2C Neurotransmitter Receptor Q14957 2905 GRIN2D Neurotransmitter Receptor O15399 2906 GRIN3A Neurotransmitter Receptor Q8TCU5 116443 GRIN3B Neurotransmitter Receptor O60391 116444 GRK2 Neurotransmitter Receptor P25098 156 GRK3 Neurotransmitter Receptor P35626 157 GRM1 Neurotransmitter Receptor Q13255 2911 GRM2 Neurotransmitter Receptor Q14416 2912 GRM3 Neurotransmitter Receptor Q14832 2913 GRM4 Neurotransmitter Receptor Q14833 2914 GRM5 Neurotransmitter Receptor P41594 2915 GRM6 Neurotransmitter Receptor Q15303 2916 GRM7 Neurotransmitter Receptor Q14831 2917 GRM8 Neurotransmitter Receptor O00222 2918 HNMT Neurotransmitter Biosynthesis P50135 3176 HOMER1 Neurotransmitter Receptor Q86YM7 9456 HRH1 Neurotransmitter Receptor P35367 3269 HRH2 Neurotransmitter Receptor P25021 3274 HRH3 Neurotransmitter Receptor Q9Y5N1 11255 HRH4 Neurotransmitter Receptor Q9H3N8 59340 ITPR1 Neurotransmitter Signaling Q14643 3708 ITPR2 Neurotransmitter Signaling Q14571 3709 ITPR3 Neurotransmitter Signaling Q14573 3710 LYNX1 Neurotransmitter Receptor Q9BZG9 66004 MAOA Neurotransmitter Biosynthesis P21397 4128 MAOB Neurotransmitter Biosynthesis P27338 4129 NAM PT Neurotransmitter Biosynthesis P43490 10135 NISCH Neurotransmitter Receptor Q9Y2I1 11188 NOS1 Neurotransmitter Biosynthesis P29475 4842 NPTN Neurotransmitter Receptor Q9Y639 27020 P2RX1 Neurotransmitter Receptor P51575 5023 P2RX2 Neurotransmitter Receptor Q9UBL9 22953 P2RX3 Neurotransmitter Receptor P56373 5024 P2RX4 Neurotransmitter Receptor Q99571 5025 P2RX5 Neurotransmitter Receptor Q93086 5026 P2RX6 Neurotransmitter Receptor O15547 9127 P2RX7 Neurotransmitter Receptor Q99572 5027 P2RY11 Neurotransmitter Receptor Q96G91 5032 PAH Neurotransmitter Biosynthesis P00439 5053 PC Neurotransmitter Biosynthesis P11498 5091 PDE1B Neurotransmitter Signaling Q01064 5153 PDE4A Neurotransmitter Signaling P27815 5141 PDE4D Neurotransmitter Signaling Q08499 5144 PHOX2A Neurotransmitter Biosynthesis O14813 401 PHOX2B Neurotransmitter Biosynthesis Q099453 8929 PIK3CA Neurotransmitter Signaling P42336 5290 PIK3CB Neurotransmitter Signaling P42338 5291 PIK3CG Neurotransmitter Signaling P48736 5294 PLCB1 Neurotransmitter Signaling Q9N066 23236 PLCB2 Neurotransmitter Signaling Q00722 5330 PLCB3 Neurotransmitter Signaling Q01970 5331 PLCB4 Neurotransmitter Signaling Q15147 5332 PLCD1 Neurotransmitter Signaling P51178 5333 PLCE1 Neurotransmitter Signaling Q9P212 51196 PLCG1 Neurotransmitter Signaling P19174 5335 PLCL1 Neurotransmitter Signaling Q15111 5334 PLCL2 Neurotransmitter Signaling Q9UPRO 23228 PPP1CB Neurotransmitter Signaling P62140 5500 PPP1CC Neurotransmitter Signaling P36873 5501 PRIMA1 Neurotransmitter Biosynthesis Q86XR5 145270 PRKACG Neurotransmitter Signaling P22612 5568 PRKAR2B Neurotransmitter Signaling P31323 5577 PRKCG Neurotransmitter Signaling P05129 5582 PRKX Neurotransmitter Signaling P51817 5613 RIC3 Neurotransmitter Receptor Q7Z5B4 79608 SHANK3 Neurotransmitter Signaling Q9BYBO 85358 SLC6A1 Amine Transferase P30531 6529 Neuromodulator SLC6A13 Amine Transferase Q9N5D5 6540 Neuromodulator Slc6a4 Serotonin Transporter P31645 6532 SNX13 Neurotransmitter Signaling Q9Y5W8 23161 TAAR1 Amine Receptor Q96RJ0 134864 Neuromodulator TAAR2 Amine Receptor Q9P1 P5 9287 Neuromodulator TAAR5 Neurotransmitter Receptor O14804 9038 TH Neurotransmitter Biosynthesis P07101 7054 TPH1 Neurotransmitter Biosynthesis P17752 7166 TPH2 Neurotransmitter Biosynthesis Q8IWU9 121278 TRHDE Neurotransmitter Biosynthesis Q9UKU6 29953
(111) TABLE-US-00008 TABLE 8 NEUROTRANSMITTERS Ligand Pathway Type 2-Arachidonoylglycerol Endocannabinoid Ligand 2-Arachidonyl glyceryl ether Endocannabinoid Ligand 3-methoxytyramine Amines Ligand Acetylcholine Amino Acids Ligand Ligand Pathway Type Adenosine Purine Ligand Adenosine triphosphate Purine Ligand Agmatine Amino Acids Ligand Anandamide Endocannabinoid Ligand Aspartate Amino Acids Ligand Carbon monoxide Gas Ligand D-serine Amino Acids Ligand Dopamine Monoamines Ligand Dynorphin Opioids Ligand Endorphin Opioids Ligand Enkephalin Opioids Ligand Epinephrine Monoamines Ligand Gamma-aminobutyric acid Amino Acids Ligand Glutamate Amino Acids Ligand Glycine Amino Acids Ligand Histamine Monoamines Ligand N-Acetylaspartylglutamate Neuropeptides Ligand N-Arachidonoyl dopamine Endocannabinoid Ligand N-methylphenethylamine Amines Ligand N-methyltryptamine Amines Ligand Nitric oxide Gas Ligand Norepinephrine Monoamines Ligand Octopamine Amines Ligand Phenethylamine Amines Ligand Serotonin Monoamines Ligand Synephrine Amines Ligand Tryptamine Amines Ligand Tyramine Amines Ligand Virodhamine Endocannabinoid Ligand
(112) TABLE-US-00009 TABLE 9A AGONISTS AND ANTAGONIST AGENTS Gene Agonist Antagonist Adrb2 NCX 950 Alprenolol Accession Bitolterol Carvedilol Number: Isoetarine Desipramine P07550 Norepinephrine Nadolol Phenylpropanolamine Levobunolol Dipivefrin Metipranolol Epinephrine Bevantolol Orciprenaline Oxprenolol Dobutamine Nebivolol Ritodrine Asenapine Terbutaline Bupranolol Salmeterol Penbutolol Formoterol Celiprolol Salbutamol Pindolol Isoprenaline Acebutolol Arbutamine Bopindolol Arformoterol Fenoterol Pirbuterol Ephedra Procaterol Clenbuterol Bambuterol Indacaterol Droxidopa Olodaterol Vilanterol Pseudoephedrine Cabergoline Mirtazepine Adra1d Midodrine Dapiprazole Accession Norepinephrine Amitriptyline Number: Clonidine Alfuzosin P25100 Oxymetazoline Promazine Pergolide Prazosin Bromocriptine Imipramine Droxidopa Nortriptyline Xylometazoline Doxazosin Ergotamine Nicardipine Cirazoline Dronedarone Cabergoline Tamsulosin Methoxamine Propiomazine Epinephrine Phenoxybenzamine Carvedilol Doxepin Terazosin Quetiapine Methotrimeprazine Silodosin Adrb1 Isoetarine Esmolol Accession Norepinephrine Betaxolol Number: Phenylpropanolamine Metoprolol P08588 Epinephrine Atenolol Dobutamine Timolol Salbutamol Sotalol Isoprenaline Propranolol Arbutamine Labetalol Fenoterol Bisoprolol Pirbuterol Alprenolol Ephedra Amiodarone Clenbuterol Carvedilol Droxidopa Nadolol Pseudoephedrine Levobunolol Carteolol Metipranolol Cabergoline Bevantolol Mirtazapine Practolol Loxapine Oxprenolol Vortioxetine Celiprolol Desipramine Nebivolol Asenapine Bupranolol Penbutolol Pindolol Acebutolol Bopindolol Cartelol Adrb3 SR 58611 Bopindolol Accession Norepinephrine Propranolol Number: Epinephrine Bupranolol P13945 Isoprenaline Arbutamine Fenoterol Ephedra Clenbuterol Droxidopa Mirabegron Adrbk1 ATP Alprenolol Accession Carbachol Heparin Number: Dopamine P25098 Isoproterenol Morphine DAMGO histamine Acetylcholine Etorphine NMDA Dopamine Adrbk2 Isoproterenol Propranolol Accession DAMGO Number: ATP P26819 Chrm3 cgmp MT3 Accession ATP Hexocyclium Number: Cevimeline Himbacine P20309 arecoline Biperiden oxotremorine-M lithocholylcholine NNC 11-1314 AFDX384 xanomeline 4-DAMP oxotremorine hexahydrodifenidol pentylthio-TZTP VU0255035 arecaidine propargyl ester N-methyl scopolamine NNC 11-1607 Darifenacin furmethide Thiethylperazine NNC 11-1585 methoctramine Acetylcholine silahexocyclium methylfurmethide Strychnine Bethanechol MT7 Carbachol Heparin Succinylcholine Olanzapine ALKS 27 Pirenzepine itopride Clidinium methacholine Ipratropium Meperidine Propantheline Cinnarizine Dicyclomine Trimipramine Darifenacin Tiotropium Atropine Scopolamine Amitriptyline Doxepin Lidocaine Nortriptyline Tropicamide Metixene Homatropine Methylbromide Solifenacin Glycopyrrolate Propiomazine Diphemanil Methylsulfate Promethazine Diphenidol Pancuroniurn Ziprasidone Quetiapine Imipramine Clozapine Cyproheptadine Aripiprazole Nicardipine Amoxapine Loxapine Promazine Oxyphencyclimine Anisotropine Methylbromide Tridihexethyl Chlorpromazine Ketamine Cyclosporin A Paroxetine Benzquinamide Tolterodine Oxybutynin Alcuronium WIN 62,577 Tramadol Chlorprothixene Aclidiniurn Methotrimeprazine Umeclidinium Cryptenamine Mepenzolate Maprotiline Brompheniramine Isopropamide Trihexyphenidyl Ipratropium bromide Hyoscyamine Procyclidine Pipecuronium Fesoterodine Disopyramide Desipramine Mivacuriurn Chrna3 Nicotine A-867744 Accession Varenicline NS1738 Number: Acetylcholine Hexamethonium P32297 Ethanol Mecamylamine Cytisine Dextromethorphan Levamisole Pentolinium Galantamine Levomethadyl Acetate Bupropion Chrna6 Nicotine Hexamethonium Accession Cytisine Mecamylamine Number: Varenicline Q15825 Galantamine Chrna9 Nicotine Hexamethonium Accession Galantamine Mecamylamine Number: Ethanol Tetraethylammonium Q9UGM1 Muscarine ATG003 Strychnine Lobeline RPI-78M Chrnb1 Galantamine Accession Number: P11230 Chrnb4 Nicotine Atropine Accession Varenicline Oxybutynin Number: PNU-120596 Pentolinium P30926 Ethanol Dextromethorphan Galantamine Chrng Galantamine Accession Number: P07510 Adcyap1 Nicotine Atropine Accession CGMP PPADS Number: Apomorphine Onapristone P18509 Suramin Muscarine Nifedipine Haloperidol ATP Astressin Dihydrotestosterone Melatonin Maxadilan Scopolamine Dexamethasone Tetrodotoxin Acetylcholine Apamin Histamine Hexamethonium Carbachol Indomethacin NMDA Propranolol Dopamine Bumetanide Isoproterenol Progesterone Salbutamol Charybdotoxin Morphine Prazosin Clonidine Nimodipine 2,6-Diamino-Hexanoic Acid Amide CYSLTR1 Salbutamol Montelukast Accession Dexamethasone Zafirlukast Number: Arachidonic acid Cinalukast Q9Y271 Histamine Pranlukast Nedocromil Theophylline Indomethacin Zileuton Iralukast Pobilukast Sulukast Verlukast LTB4R LTB U75302 Accession ATP CP105696 Number: Dexamethasone CP-195543 Q15722 cholesterol Etalocib 20-hydroxy-LTB< SC-41930 12R-HETE LY255283 arachidonic acid Zafirlukast ONO-4057 RO5101576 BILL 260 PENK Dopamine Naltrexone Accession kainate Naloxone Number: NMDA Progesterone P01210 DAMGO Morphine Htr2c Apomorphine Melatonin Accession Bifeprunox SB 224289 Number: Tramadol LY334362 P28335 AL-37350A FR260010 5-MeO-DMT Sulpiride BW723086 Thiethylperazine CGS-12066 cyamemazine DOI Mesulergine 5-CT SB 221284 YM348 Zotepine LSD Metergoline xanomeline methiothepin WAY-163909 Spiperone Dopamine SB 215505 LY344864 Tiospirone VER-3323 SB 228357 TFMPP Pizotifen 8-OH-DPAT SB 206553 MK-212 SB 204741 NMDA SDZ SER-082 org 12962 Ritanserin 5-MeOT SB 242084 RU 24969 S33084 Acetylcholine Roxindole QUINPIROLE RS-127445 quipazine Terguride tryptamine EGIS-7625 Ro 60-0175 SB 243213 Oxymetazoline RS-102221 Ergotamine Olanzapine Cabergoline Aripiprazole Lorcaserin Agomelatine Pergolide Ziprasidone Methylergonovine Quetiapine Renzapride Sarpogrelate Pramipexole Perphenazine GR-127935 Thioridazine BRL-15572 Sertindole ipsapirone Loxapine SB 216641 Methysergide SL65.0155 Risperidone S 16924 Asenapine Bromocriptine Mianserin Lisuride Clozapine Tegaserod Trifluoperazine Epicept NP-1 Trazodone dapoxetine Doxepin Dexfenfluramine Nortriptyline 3,4- Chlorprothixene Methylenedioxymethamphetamine Ropinirole Minaprine Maprotiline Propiomazine Desipramine Mirtazapine Amoxapine Yohimbine Cyproheptadine Imipramine Amitriptyline Promazine Chlorpromazine Ketamine Propranolol Fluoxetine Ketanserin Mesulergine AC-90179 Ergoloid mesylate 2 Methotrimeprazine Paliperidone Clomipramine Trimipramine Captodiame Nefazodone GABA Bamaluzole bicuculline Receptor GABA Metrazol Accession Gabamide Flumazenil Numbers GABOB Thiothixine (Q9UBS5, Gaboxadol Bupropion O95166, Ibotenic acid Caffeine O75899, Isoguvacine P28472, Isonipecotic acid P18507, Muscimol P47870, Phenibut P47869, Picamilon O14764) Progabide Quisqualamine SL 75102 Thiomuscimol Alcohols (e.g., ethanol, isopropanol) Avermectins (e.g., ivermectin) Barbiturates (e.g., phenobarbital) Benzodiazepines Bromides (e.g., potassium bromide Carbamates (e.g., meprobamate, carisoprodol) Chloralose Chlormezanone Clomethiazole Dihydroergolines (e.g., ergoloid (dihydroergotoxine)) Etazepine Etifoxine Imidazoles (e.g., etomidate) Kavalactones (found in kava) Loreclezole Neuroactive steroids (e.g., allopregnanolone, ganaxolone) Nonbenzodiazepines (e.g., zaleplon, zolpidem, zopiclone, eszopiclone) Petrichloral Phenols (e.g., propofol) Piperidinediones (e.g., glutethimide, methyprylon) Propanidid Pyrazolopyridines (e.g., etazolate) Quinazolinones (e.g., methaqualone) Skullcap constituents Stiripentol Sulfonylalkanes (e.g., sulfonmethane, tetronal, trional) Valerian constituents (e.g., valeric acid, valerenic acid) Volatiles/gases (e.g., chloral hydrate, chloroform, diethyl ether, sevoflurane) Glutamate 3,5-dihydroxyphenylglycine APICA Receptor eglumegad EGLU Accession Biphenylindanone A LY-341,495 Number: DCG-IV (P42261, L-AP4 P39086, P39086, Q13585, P42261, P42262, P42263, P48058, P39086, Q13002, Q13003, Q13003, Q16478, Q12879, Q14957, Q13224, Q14957, O15399, Q8T0U5, O60391) CNR1/ N-Arachidonoylethanolamine SR 141716A CNR2 2-Arachidonoyl-glycerol LY-320135 Accession 2-Arachidonoyl-glycerylether AM251 Number: N-Arachidonoyl-dopamine AM281 (P21554, O-Arachidonoyl-ethanolamine SR 144528 P34972) N-Arachidonoylethanolamine AM630 2-Arachidonoyl-glycerol 2-Arachidonoyl-glycerylether N-Arachidonoyl-dopamine O-Arachidonoyl-ethanolamine Δ-9-THC CP-55,940 R(+)-WIN 55,212-2 HU-210 Levonantradol Nabilone Methanandamide ACEA O-1812 Δ9-THC CP-55,940 R(+)-WIN 55,212-2 HU-210 Levonantradol Nabilone Methanandamide JWH-015 JWH-133
(113) TABLE-US-00010 TABLE 9B ADRENERGIC AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Non- adrenaline (epinephrine), carvedilol, arotinolol, selective noradrenaline (norepinephrine), and labetalol isoprenaline (isoproterenol), dopamine, caffeine, nicotine, tyramine, methylphenidate, ephedrine and pseudophedrine. α1 selective phenylephrine, methoxamine, acepromazine, alfuzosin, (ADRA1A, midodrine, cirazoline, doxazosin, labetalol, ADRA1B, xylometazoline, metaraminol phenoxybenzamine, ADRA1D) chloroehtylclonidine, KW3902, phentolamine, oxymetazoline trazodone, prazosin, tamsulosin, amitriptyline, silodosin, terazosin, tolazoline, clomipramine, doxepin, trimipramine, typical and atypical antipsychotics, and antihistamines, such as hyroxyzine α2 selective α-methyl dopa, clonidine, phentolamine, (ADRA2A, brimonidine, agmatine, phenoxybenzamine, ADRA2B, dexmedetomidine, yohimbine, ADRA2C) medetomidine, romifidine idazoxan, atipamezole, chloroethylclonidine, mirtazapine, tolazoline, detomidine, lofexidine, xylazine, trazodone, and tizanidine, guanfacine, and typical and atypical amitraz antipsychotics β1 selective Dobutamine metroprolol, atenolol, (ADRB1) acebutolol, bisoprolol, betaxolol, levobetaxolol, esmolol, celiprolol, carteolol, landiolol, oxprenolol, propanolol, practolol, penbutolol, timolol, labetalol, nebivolol, levobunolol, nadolol, pindolol, sotalol, metipranolol, tertatolol, vortioxene β2 selective salbutamol, albuterol, bitolterol butaxamine, acebutolol, (ADRB2) mesylate, levabuterol, ritodrine, timolol, propanolol, metaproterenol, terbutaline, levobunolol, carteolol, salmeterol, formoterol, and labetalol, pindolol, pirbuterol oxprenolol, nadolol, metipranolol, penbutolol, tertatolol, sotalol β3 selective L-796568, amibegron, SR 59230A, arotinolol (ADRB3) solabegron, mirabegron
(114) TABLE-US-00011 TABLE 9C DOPAMINE AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Non- pramipexole, haloperidol, paliperidone, clozapine, selective ropinirole, risperidone, olanzapine, quetiapine, rotigotine, ziprasidone, metoclopramide, apomorphine, droperidol, domperidone, propyl- amoxapine, clomipramine, norapomorphine, trimipramine, choline, melatonin, bromocriptine, acepromazine, amisulpride, cabergoline, asenapine, azaperone, benperidol, ciladopa, bromopride, butaclamol, dihydrexidine, chlorpromazine, clebopride, dinapsoline, chlorprothixene, clopenthixol, doxamthrine, clocapramine, eticlopride, epicriptine, flupenthixol, fluphenazine, lisuride, fluspirilene, hydroxyzine, itopride, pergolide, iodobenzamide, levomepromazine, piribedil, levosulpiride, loxapine, quinagolide, mesoridazine, metopimazine, roxindole, mosapramine, nafadotride, dopamine nemonapride, penfluridol, perazine, perphenazine, pimozide, prochlorperazine, promazine, pipotiazine, raclopride, remoxipride, spiperone, spiroxatrine, stepholidine, sulpiride, sultopride, tetrahydropalmatine, thiethylperazine, thioridazine, thiothixene, tiapride, trifluoperazine, trifluperidol, triflupromazine, thioproperazine, taractan, zotepine, zuclopenthixol, ziprasidone, ANP- 010, NGD-94-4 D1 Fenoldopam, SCH-23,390, SKF-83,959, (DRD1) A-86929, Ecopipam, Clebopride, dihydrexidine, Flupenthixol, Zuclopenthixol, dinapsoline, Taractan, PSYRX-101, LuAF- dinoxyline, 35700, GLC-756, ADX10061, doxanthrine, Zicronapine SKF-81297, SKF-82958, SKF-38393, G-BR-APB, dopexamine D2 Cabergoline, Chloroethylnorapomorphine, (DRD2) pergolide, desmethoxyfallypride, domperidone, quinelorane, eticlopride, fallypride, hydroxyzine, sumanirole, itopride, L-741,626, SV 293, talipexole, yohimbine, raclopride, sulpiride, piribedil, paliperidone, penfluridol, quetiapine, quinpirole, lurasidone, risperidone, olanzapine, quinelorane, blonanserin, perphenazine, dinoxyline, metoclopramide, trifluoperazine, dopexamine clebopride, levosulpiride, flupenthixol, haloperidol, thioridazine, alizapride, amisulpride, asenapine, bromopride, bromperidol, clozapine, fluphenazine, perphanazine, loxapine, nemonapride, pericyazine, pipamperone, prochlorperazine, thioproperazine, thiethylperazine, tiapride, ziprasidone, zuclopenthixol, taractan, fluanisone, melperone, molindone, remoxipride, sultopride, ALKS 3831, APD-403, ONC201, pridopidine, DSP-1200, NG-101, TAK-906, ADN-1184, ADN-2013, AG-0098, DDD-016, IRL-626, KP303, ONC-206, PF-4363467, PGW-5, CG-209, ABT-925, AC90222, ACP-005, ADN-2157, CB030006, CLR-136, Egis-11150, Iloperidone, JNJ-37822681, DLP- 115, AZ-001, S-33138, SLV-314, Y- 931, YKP1358, YK-P1447, APD405, CP-903397, ocaperidone, zicronapine, TPN-902 D3 Piribedil, Domperidone, FAUC 365, (DRD3) quinpirole, nafadotride, raclopride, PNU-99,194, captodiame, SB-277011-A, sulpiride, risperidone, compound R, R-16, YQA14, U99194, SR 21502, FAUC 54, FAUC levosulpiride, amisulpride, 73, PD-128,907, nemonapride, ziprasidone, taractan, PF-219,061, PF- sultopride, APD-403, F17464, 592,379, CJ-1037, ONC201, NG-101, TAK-906, ONC- FAUC 460, FAUC 206, PF-4363467, ABT-127, ABT- 346, cariprazine 614, GSK-598809, GSK-618334, S- 14297, S-33138, YKP1358, YK- P1447 D4 WAY-100635, A-381393, FAUC 213, L-745,870, (DRD4) A-412,997, L-570,667, ML-398, fananserin, ABT-724, ABT- clozapine, PNB-05, SPI-376, SPI- 670, FAUC 316, 392, Lu-35-138, NGD-94-1 PD-168, 077, CP-226,269 D5 Dihydrexidine, SCH 23390 (DRD5) rotigotine, Partial SKF-83,959, fenoldopam, aplindore, brexpiprazole, aripiprazole, CY-208,243, pardoprunox, phencyclidine, and salvinorin A
(115) TABLE-US-00012 TABLE 9D GABA AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist GABAA barbiturates (e.g., allobarbital, bicuculline, gabazine, amobarbital, aprobarbital, alphenal, hydrastine, pitrazepin, barbital, brallobarbital, phenobarbital, sinomenine, tutin, secobarbital, thiopental), thiocolchicoside, bamaluzole, GABA, GABOB, metrazol, securinine, gaboxadol, ibotenic acid, gabazine isoguvacine, isonipecotic acid, muscimol, phenibut, picamilon, progabide, quisqualamine, SL 75102, thiomuscimol, positive allosteric modulators (PAMs) (e.g., alcohols, such as ethanol and isopropanol; avermectins, such as ivermectin; benzodiazepines, such as diazepam, alprazolam, chlordiazepoxide, clonazepam, flunitrazepam, lorazepam, midazolam, oxazepam, prazepam, brotizolam, triazolam, estazolam, lormetazepam, nitrazepam, temazepam, flurazepam, clorazepate halazepam, prazepam, nimetazapem, adinazolam, and climazolam; bromides, such as potassium bromide; carbamates, such as meprobamate and carisoprodol; chloralose; chlormezanone; chlomethiazole; dihydroergolines, such as ergoloid; etazepine; etifoxine; imidazoles, such as etomidate; imidazopyridines, such as alpidem and necopdiem; kavalactones; loreclezole; neuroactive steroids, such as allogregnanolone, pregnanolone, dihydrodeoxycorticosterone, tetrahydrodeoxycortisosterone, androstenol, androsterone, etiocholanolone, 3α-androstanediol, 5α, 5β, or 3α-dihydroprogesterone, and ganaxolone; nonbenzodiazepines, such as zalepon, zolpidem, zopiclone, and eszopiclone; petrichloral; phenols, such as propofol; piperidinediones, such as glutethimide and methyprylon; propanidid; pyrazolopyridines, such as etazolate; pyrazolopyrimidines, such as divaplon and fasiplon; cyclopyrrolones, sush as pagoclone and suproclone; 8-cabolines, such as abecarnil and geodecarnil; quinazolinones, such as methaqualone; Scutellaria constituents; stiripentol; sulfonylalkanes, such as sulfonomethane, teronal, and trional; Valerian constituents, such as valeric acid and valerenic acid; and gases, such as chloral hydrate, chloroform, homotaurine, diethyl ether, and sevoflurane. GABA.sub.B 1,4-butanediol, baclofen, GABA, CGP-35348, Gabamide, GABOB, gamma- homotaurine, butyrolactone, gamma- phaclofen, saclofen, hydroxybutyric acid, gamma- and SCH-50911 hyrdoxyvaleric acid, gamma- valerolactone, isovaline, lesogaberan, phenibut, picamilon, progabide, homotaurine, SL-75102, tolgabide GABA.sub.A-β CACA, CAMP, GABA, GABOB, N4- gabazine, gaboxadol, chloroacetylcytosine arabinoside, isonipecotic acid, picamilon, progabide, tolgabide, and SKF-97,541, and (1,2, neuroactive steroids, such as 5,6-Tetrahydropyridin- allopregnanolone, THDOC, and 4-yl)methylphosphinic alphaxol one acid
(116) TABLE-US-00013 TABLE 7E MUSCARINC AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Chrm1 AF102B, AF150(S), atropine, dicycloverine, AF267B, acetylcholine, hyoscyamine, ipratropium, carbachol, cevimeline, mamba toxin muscarinic muscarine, oxotremorine, toxin 7 (MT7), olanzapine, pilocarpine, vedaclidine, oxybutynin, pirenzepine, 77-LH-28-1, CDD-0097, telenzepine, and tolterodine McN-A-343, L689,660, and xanomeline Chrm2 acetylcholine, atropine, dicycloverine, methacholine, iper-8- hyoscyamine,otenzepad, naph, berbine, and AQRA-741, AFDX-384, (2S,2′R,3′S,5′R)- thorazine,diphenhydramine, 1-methyl-2-(2-methyl- dimenhydrinate, ipratropium, 1,3-oxathiolan- oxybutynin, pirenzepine, 5-yl)pyrrolidine methoctramine, tripitramine, 3-sulfoxide gallamine, and tolterodine methyl iodide Chrm3 acetylcholine, atropine, dicycloverine, bethanechol, carbachol, hyoscyamine, alcidium L689, 660, oxotremorine, bromide, 4-DAMP, darifenacin, pilocarpine, aceclidine, DAU-5884, HL-031,120, arecoline, and cevimeline ipratropium, J-104,129, oxybutynin, tiotropium, zamifenacin, and tolterodine Chrm4 acetylcholine, carbachol, AFDX-384, dicycloverine, and oxotremorine), and himbacine, mamba toxin 3, PD- Chrm5 agonists (e.g., 102,807, PD-0298029, and acetylcholine, tropicamide milameline, sabcomeline Chrm5 acetylcholine, VU-0488130, xanomeline milameline, sabcomeline Non- scopolamine, hydroxyzine, selective doxylamine, dicyclomine, flavoxate, cyclopentolate, atropine methonitrate, trihexyphenidyl/benzhexol, solifenacin, benzatropine, mebeverine, and procyclidine
(117) TABLE-US-00014 TABLE 9F NICOTINIC AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Chrna choline, acetylcholine, carbachol, turbocurarine, receptors methacholine, nicotine, varenicline bupropion, tartrate, galantamine hydrobromide, mecamylamine, 18- suxamethonium chloride methozycoronaridine, (succinylcholine chloride), hexamethonium, epibatidine, iobeline, trimethaphan, decamethonium, isopronicline/TC- atraciurium, 1734/AZD3480 (TC-1734), AZD1446 doxacurium, (TC-6683), TC-5619, TC-5214, MEM mivacurium, 3454 (RG3487), ABT-894, ABT-560, pancuronium, EVP-6124, EVP-4473, PNU-282987, vecuronium, AR-R17779, SSR 189711, JN403, succinylcholine, ABBF, PHA-543613, SEN12333, dextromethorphan, GTS-21/DMXB-A, AZD0328, A- neramexane, 582941, ABT-418, 5-iodo-A-85380, dextrophan, and 3- SIB-1765F, ABT-089, and ABT-594 methoxymorphinan
(118) TABLE-US-00015 TABLE 9G GLUATAMATE RECEPTOR AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Ionotropic AMPA, glutamic AP5, AP7, CPPene, selfotel, HU-211, (GRIA-14, acid, ibotenic acid, Huperzine A, gabapentin, GRIK1-5, kainic acid, NMDA, remacemide, amantadine, and quisqualic acid atomoxetine, AZD6765, agmatine, GRIN1-3B) chloroform, dextrallorphan, dextromethorphan, dextrorphan, diphenidine, dizocilpine (MK-801), ethanol, eticyclidine, gacyclidine, ibogaine, ifenprodil, ketamine, kynurenic acid, memantine, magnesium, methoxetamine, nitromemantine, nitrous oxide, PD- 137889, perampanel, phencyclidine, rolicyclidine, tenocyclidine, methoxydine, tiletamine, neramexane, eliprodil, etoxadrol, dexoxadrol, WMS-2539, NEFA, delucemine, 8A-PDHQ, aptiganel, rhynchophylline Metabotropic L-AP4, ACPD, AIDA, fenobam, MPEP, LY-367,385, (GRM1-8) L-QA, CHPG, LY- EGLU, CPPG, MAP4, MSOP, LY- 379,268, LY- 341,495 354,740, ACPT, VU 0155041 Glycine rapastinel, NRX-1074, 7- antagonists chlorokynurenic acid, 4- chlorokynurenine, 5,7- dichlorokynurenic acid, kynurenic acid, TK-40, 1- aminocyclopropanecarboxylic acid (ACPC), L-phenylalanine, and xenon
(119) TABLE-US-00016 TABLE 9H HISTAMINE AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Non- histamine selective dihydrochloride, HTMT dimaleate, 2-pyridylethlyamine dihydrochloride H.sub.1 acrivastine, azelastine, astemizole, bilastine, bromodiphenhydramine, brompheniramine, buclizine, carbinoxamine, cetirizine, cetirizine dihydrochloride, clemastine fumarate, clemizole hydrochloride, chlorodiphenhydramine, chlorphenamine, chlorpromazine, clemastine, cyclizine, cyproheptadine, dexbrompheniramine, dexchlorpheniramine, dimenhydrinate, dimethindene maleate, dimetindene, diphenhydramine, diphenhydramine hydrochloride, doxepin hydrochloride, doxylamine, ebastine, embramine, fexofenadine, fexofenadine hydrochloride, hydroxyzine, ketotifen fumarate, loratadine, meclizine, meclizine dihydrochloride, mepyramine maleate, mirtazapine, olopatadine, olopatadine hydrochloride, orphenadrine, phenindamine, pheniramine, phenyltoloxamine, promethazine, quetiapine, rupatadine, terfenadine, tripelennamine, zotepine, trans- triprolidine hydrochloride, and triprolidine H.sub.1 cetirizine, levocetirizine, inverse desloratadine, and pyrilamine agonists H.sub.2 betazole, aminopotentidine, cimetidine, impromidine, famotidine, ICI 162,846, lafutidine, dimaprit nizatidine, ranitidine, ranitidine dihydrochloride, hyrdochloride, roxatidine, and amthamine zolantadine dimaleate, and toitidine dihyrdobromide H.sub.3 imetit clobenpropit, clobenpropit dihydropbromide, dihydrobromide, A 3314440 immepip dihyrdochloride, BF 2649 dihyrdrobromide, hydrochloride, carcinine immethridine ditrifluoroacetate, ABT-239, dihydrobromide, ciprofaxin, conessine, GT 2016, A- α-Methylhistamine 349,821, impentamine dihydrobromide, dihydrobromide, iodophenpropit N-methylhistamine dihydrobromide, JNJ 10181457 dihydrochloride, dihydrochloride, JNJ 5207852 proxyfan oxalate, dihydrochloride, ROS 234 dioxalate, and betahistine SEN 12333, VUF 5681 dihydrobromide, and thioperamide H.sub.4 imetit thioperamide, JNJ 7777120, A dihydropbromide, 943931 dihydrochloride, A 987306, immepip JNJ 10191 584 maleate, and VUF- dihyrdrobromide, 6002 4-methylhistamine dihydrochloride, clobenpropit dihydrobromide, VUF 10460, and VUF 8430 dihydrobromide
(120) TABLE-US-00017 TABLE 9I CANNABINOID AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist Canna- Anandamide, N- binoid Arachidonoyl dopamine, receptor 2-Arachidonoylglycerol (non- (2-AG), 2-Arachidonyl selective) glyceryl ether, Δ-9- Tetrahydrocannabinol, EGCG, Yangonin, AM-1221, AM-1235, AM-2232, UR-144, JWH-007, JWH-015, JWH-018, ACEA, ACPA, arvanil, CP 47497, DEA, leelamine, methanandamide, NADA, noladin ether, oleamide, CB 65, GP-1a, GP-2a, GW 405833, HU 308, JWH-133, L-759,633, L-759,656, LEI 101, MDA 19, and SER 601 CB.sub.1 ACEA, ACPA, RVD- rimonabant, cannabidiol, Δ.sup.9- receptor Hpα, (R)-(+)- tetrahydrocannabivarin (THCV), methanandamide taranabant, otenabant, surinabant, rosonabant, SLV-319, AVE1625, V24343, AM 251, AM 281, AM 6545, hemopressin, LY 320135, MJ 15, CP 945598, NIDA 41020, PF 514273, SLV 319, SR 1141716A, and TC-C 14G CB.sub.2 CB 65, GP 1a, cannabidiol, Δ.sup.9- receptor GP 2a, GW 405833, tetrahydrocannabivarin (THCV), HU 308, JWH 133, AM 630, COR 170, JTE 907, L-759,656, L-759,633, and SR 144528 SER 601, LEI 101
(121) TABLE-US-00018 TABLE 9J PURINERGIC RECEPTOR AGONISTS AND ANTAGONISTS Receptor Agonist Antagonist ADORA1 Adenosine, N6- Caffeine, theophylline, 8- (P1 Cyclopentyladenosine, Cyclopentyl-1,3-dimethylxanthine adenosine N6-3-methoxyl-4- (CPX), 8-Cyclopentyl-1,3- receptor) hydroxybenzyl adenine dipropylxanthine (DPCPX), 8- riboside (B2), CCPA, Phenyl-1,3-dipropylxanthine, tecadenoson, bamifylline, BG-9719, BG09928, selodenoson, FK-453, FK838, rolofylline, N- Certain Benzodiazepines 0861, and PSB 36 and Barbiturates, 2′-MeCCPA, GR 79236, and SDZ WAG 994 ADORA2A Adenosine, N6-3- Caffeine, theophylline, (P1 methoxyl-4- istradefylline, SCH-58261, adenosine hydroxybenzyl SCH-442,416, ATL- receptor) adenine riboside (B2), 444, MSX-3, preladenant, SCH- YT-146, DPMA, 412,348, VER-6623, VER-6947, UK-423,097, limonene, VER-7835, vipadenant, and ZM- NECA, CV-3146, 241,385 binodenoson, ATL- 146e, CGS-21680, and Regadenoson ADORA2B Adenosine, 5′-N- Caffeine, theophylline, CVT- (P1 ethyl- 6883, ATL-801, compound 38, adenosine carboxamidoadenosine, MRS-1706, MRS-1754, OSIP- receptor) BAY 60-6583, 339,391, PSB-603, PSB-0788, LUF-5835, NECA, and PSB-1115 (S)-PHPNECA, and LUF-5845 ADORA3 Adenosine, 2-(1- Caffeine, theophylline, MRS- (P1 Hexynyl)-N- 1191, MRS-1220, MRS-1334, adenosine methyladenosine, CF-101 MRS-1523, MRS-3777, receptor) (IB-MECA), CF-102, 2- MRE3008F20, MRE3005F20, C1-1B-MECA, CP- OT-7999, SSR161421, KF-26777, 532,903, inosine, LUF- PSB-10, PSB-11, and VUF-5574 6000, and MRS-3558 P2Y ATP, ADP, UTP, UDP, clopidogrel, elinogrel, prasugrel, receptor UDP-glucose, 2- ticlopidine, ticagrelor, AR-C methylthioladenosine 5′ 118925XX, AR-C 66096, AR-C diphosphate (2- 69931, AZD 1283, MRS 2179, MeSADP), MRS 2211, MRS 2279, MRS lysophosphatidic acid, 2500, MRS 2578, NF 157, NF PSB 1114, PSB 0474, 340, PPADS, PPTN NF 546, MRS 2365, hydrochloride, PSD 0739, MRS 2690, MRS 2693, SAR 216471, and suramin MRS 2768, MRS 2905, MRS 2957, MRS 4062, and denufosol (P2Y.sub.2 agonist) P2X ATP A 438079, A 740003, A 804598, receptor A 839977, AZ 10606120, AZ 11645373, 5-BDBD, BX 430, Evans Blue, JNJ 47965567, KN-62, NF 023, NF 110, NF 157, NF 279, NF 449, PPADS, iso- PPADS, PPNDS, Ro 0437626, Ro 51, RO-3, TC-P 262, suramin, TNP-ATP, and P2X.sub.7 antagonists NF279, calmidazolium, and KN-62
(122) TABLE-US-00019 TABLE 10 Type Modulators Norepinephrine reuptake inhibitors amedalin, atomoxetine, CP-39,332, daledalin, (increase adrenergic neurotransmission) edivoxetine, esreboxetine, lortalamine, nisoxetine, reboxetine, talopram, talsupram, tandamine, viloxazine, bupropion, ciclazindol, manifaxine, maprotiline, radafaxine, tapentadol, teniloxazine, protriptyline, nortriptyline, and desipramine Norepineprhine-dopamine reuptake inhibitors amineptine, bupropion, desoxypipradrol, (increase adrenergic and dopamine dexmethylphenidate, difemetorex, diphenylprolinol, neurotransmission) ethylphenidate, fencamfamine, fencamine, lefetamine, methylenedioxypyrovalerone, methylphenidate, nomifensine, O-2172, oxolinic acid, pipradrol, prolintane, pyrovalerone, tametraline, and WY-46824 Serotonin-norepinephrine-dopamine reuptake mazindol, nefazodone, sibutramine, venlafaxine, inhibitors (SNDRIs) and serotonin-norepinephrine esketamine, duloxetine, ketamine, phencyclidine, reuptake inhibitors (SNRIs) tripelennamine, mepiprazole, amitifadine, AN788, (increase adrengergic, dopamine, and serotonin ansofaxine, centanafadine, atomoxetine, neurotransmission) desvenlafaxine, milnacipran, levomilnacipran, dasotraline, Lu AA34893, Lu AA37096, NS-2360, tedatioxetine, tesofensine, bicifadine, BMS- 866,949, brasofensine, diclofensine, DOV-216,303, EXP-561, liafensine, NS-2359, RG-7166, SEP- 227,162, SEP-228,425, SEP-228,432, naphyrone, 3,3-Diphenylcyclobutanamine, 3,4- Dichlorotametraline, D-161, desmethylsertraline, DMNPC, DOV-102,677, fezolamine, GSK1360707F, indatraline, JNJ-7925476, JZ-IV- 10, JZAD-IV-22, LR-5182, methylnaphthidate, MI-4, PRC200-SS, PRC050, PR0025, SKF-83,959, TP1, phenyltropanes (e.g., WF-23, dichloropane, and RTI-55), Ginkgo biloba extract, St John's Wort, hyperforin, adhyperforin, and uliginosin B Dopamine reuptake inhibitors Dopamine reuptake inhbiitors (e.g., altropane, (increase dopamine neurotransmission) amfonelic acid, amineptine, BTCP, 30-PEP, DBL- 583, difluoropine, GBR-12783, GBR-12935, GBR- 13069, GBR-13098, GYKI-52895, lometopane, methylphenidate, ethylphenidate, modafinil, armodafinil, RTI-229, vanoxerine, adrafinil, benztropine, bupropion, fluorenol, medifoxamine, metaphit, rimcazole, venlafaxine, Chaenomeles speciosa, and oroxylin A), dopamine releasing agents (e.g., p-Tyramine), dextroamphetamine, lisdexamfetamine, dexmethylphenidate, and cathinone Dopamine prodrugs Levopoda, docarpamine (increase dopamine neurotransmission) GABA reuptake inhibitors CL-996, deramciclane, gabaculine, guvacine, (increase GABA neurotransmission) nipecotic acid, NNC-711, NNC 05-2090, SKF- 89976A, SNAP-5114, tiagabine, and hyperforin GABA analogs gabapentin, butyric acid, valproic acid, valpromide, (increase GABA neurotransmission) valnoctamide, 3-hydroxybutanal, GHB, sodium, oxybate, aceburic acid, GBL, GHBAL, GHV, GVL, GHC, GCL, HOCPCA, UMB68, pregabalin, tolibut, phaclofen, sacolfen, arecaidine, gaboxadol, isonipecotic acid, 3-Methyl-GABA, AABA, BABA, DAVA, GAVA, Glutamic acid, hopantenic acid, piracetam, and vigabatrin GABA prodrugs L-Glutamine, N-Isonicotinoyl-GABA, picamilon, (increase GABA neurotransmission) progabide, tolgabide Acetylcholinesterase inhibitors carbamates, physostigmine, neostigmine, (increase nicotinic and muscarinic pyridostigmine, ambenonium, demecarium, neurotransmission) rivastigmine, phenanthrene derivatives, galantamine, caffeine, rosmarinic acid, alpha- pinene, piperidines, donepezil, tacrine, edrophonium, Huperzine A, ladostigil, ungeremine, lactucopicrin, dyflos, echothiophate, parathion, and quasi-irreversible acetylcholinesterase inhibitors Serotonin reuptake inhibitors alaproclate, cericlamine, citalopram, dapoxetine, (increase serotonin neurotransmission) escitalopram, femoxetine, fluoxetine, fluvoxamine, ifoxetine, indalpine, omiloxetine, panuramine, paroxetine, pirandamine, RTI-353, sertraline, zimelidine, desmethylcitalopram, didesmethylcitalopram, seproxetine ((S)- norfluoxetine), desvenlafaxine, cianopramine, litoxetine, lubazodone, SB-649,915, trazodone, vilazodone, vortioxetine, dextromethorphan, dextropropoxyphene, dimenhydrinate, diphenhydramine, mepyramine (pyrilamine), mifepristone, delucemine, mesembrenone, mesembrine, roxindole, duloxetine, levomilnacipran, milnacipran, dapoxetine, sibutramine, chlorpheniramine, dextropmethorphan, and methadone Serotonin releasing agents chlorphentermine, cloforex, dexfenfluramine, (increase serotonin neurotransmission) etolorex, fenfluramine, flucetorex, indeloxazine, levofenfluramine, tramadol, carbamazepine, amiflamine (FLA-336), viqualine (PK-5078), 2- Methyl-3,4-methylenedioxyamphetamine (2-Methyl- MDA), 3-Methoxy-4-methylamphetamine (MMA), 3- Methyl-4,5-methylenedioxyamphetamine (5-Methyl- MDA), 3,4-Ethylenedioxy-N-methylamphetamine (EDMA), 4-Methoxyamphetamine (PMA), 4- Methoxy-N-ethylamphetamine (PMEA), 4-Methoxy- N-methylamphetamine (PMMA), 4- Methylthioamphetamine (4-MTA), 5-(2- Aminopropyl)-2,3-dihydrobenzofuran (5-APDB), 5- Indanyl-2-aminopropane (IAP), 5-Methoxy-6- methylaminoindane (MMAI), 5-Trifluoromethyl-2- aminoindane (TAI), 5,6-Methylenedioxy-2- aminoindane (MDAI), 5,6-Methylenedioxy-N- methyl-2-aminoindane (MDMAI), 6-Chloro-2- aminotetralin (6-CAT), 6-Tetralinyl-2-aminopropane (TAP), 6,7-Methylenedioxy-2-aminotetralin (MDAT), 6,7-Methylenedioxy-N-methyl-2-aminotetralin (MDMAT), N-Ethyl-5-trifluoromethyl-2-aminoindane (ETAI), N-Methyl-5-indanyl-2-aminopropane, aminorex, MDMA, MDEA, MDA, MBDB, and tryptamines, such as DMT, aMT, 5MeO-NMT, NMT, NETP, Dimethyl-Serotonin, 5MeO-NET, αET and αMT Excitatory amino acid reuptake inhibitors didydrokanic acid, WAY-213,613, L-trans-2,4-PDC, (increase Glutamate receptor neurotransmission) amphetamine, and L-Theanine Glycine reuptake inhibitors bitopertin, Org 24598, Org 25935, ALX-5407, (increase Glutamate receptor neurotransmission) sacrosine, Org 25543, and N-arachidonylglycerine Histidine decarboxylase inhibitors Tritoqualine, catechin (decrease histamine neurotransmission) Endocannabinoid enhancers AM404, fatty acid amide hydrolase inhibitors (e.g., (increase cannabinoid neurotransmission) AM374, ARN2508, BIA 10-2472, BMS-469908, CAY-10402, JNJ-245, JNJ-1661010, JNJ- 28833155, JNJ-40413269, JNJ-42119779, JNJ- 42165279, MK-3168, MK-4409, MM-433593, OL- 92, OL-135, PF-622, PF-750, PF-3845, PF- 04457845, PF-04862853, RN-450, SA-47, SA-73, SSR-411298, ST-4068, TK-25, URB524, URB597, URB694, URB937, VER-156084, and V-158866 Monoacylglycerol lipase inhibitors N-arachidonoyl maleimide, JZL184 (increase cannabinoid neurotransmission) Endocannabinoid transporter inhibitors SB-FI-26 (increase cannabinoid neurotransmission) Endocannabinoid reuptake inhibitors AM404, AM1172, LY-2183240, O-2093, OMDM-2, (increase cannabinoid neurotransmission) UCM-707, VDM-11, guineensine, ETI-T-24_B_I, WOBE437, and RX-055 Adenosine uptake inhibitors cilostazol, dilazep, and dipyramidole (increase purinergic neurotransmission) Nucleoside transporter inhibitors 8MDP, Decynium 22, 5-iodotubercidin, NBMPR, (increase purinergic neurotransmission) and TC-T 6000
(123) In some embodiments, the neurotransmission activator is a neurotoxin listed in Table 11, or a functional fragment or variant thereof. Neurotoxins include, without limitation, convulsants, nerve agents, parasympathomimetics, and uranyl compounds. Neurotoxins may be bacterial in origin, or fungal in origin, or plant in origin, or derived from a venom or other natural product. Neurotoxins may be synthetic or engineered molecules, derived de novo or from a natural product. Suitable neurotoxins include but are not limited to botulinum toxin and conotoxin. Exemplary neurotoxins are listed in Table 11.
(124) TABLE-US-00020 TABLE 11 NEUROTOXINS 2,4,5-Trihydroxyamphetamine 2,4,5-Trihydroxymethamphetamine 3,4-Dichloroamphetamine 5,7-Dihydroxytryptamine 5-Iodowillardiine Ablomin Aconitine Aconitum Aconitum anthora AETX Agelenin Agitoxin Aldrin Alpha-Methyldopamine Alpha-neurotoxin Altitoxin Anatoxin-a Androctonus australis hector insect toxin Anisatin Anthopleurin Antillatoxin Anuroctoxin Apamin Arum italicum Arum maculatum Babycurus toxin 1 Batrachotoxin BDS-1 Bestoxin Beta-Methylamino-L-alanine BgK Birtoxin BmKAEP BmTx3 BotIT2 BotIT6 Botulinum toxin Brevetoxin Bukatoxin Butantoxin Calcicludine Calciseptine Calitoxin Caramboxin Carbon disulfide CgNa toxin Charybdotoxin Cholera toxin Cicutoxin Ciguatoxin Cll1 Clostridium botulinum Clostridium difficile toxin A Conantokins Conhydrine Coniine Conotoxin Contryphan Cssll CSTX Curare Cyanide poisoning Cylindrospermopsin Cypermethrin Delta atracotoxin Dendrotoxin Dieldrin Diisopropyl fluorophosphates Dimethylmercury Discrepin Domoic acid Dortoxin DSP-4 Ergtoxin Falcarinol Fenpropathrin Gabaculine Ginkgotoxin Grammotoxin Grayanotoxin Hainantoxin Halcurin Hefutoxin Helothermine Heteroscodratoxin-1 Histrionicotoxin Homoquinolinic acid Hongotoxin Huwentoxin Ibotenic acid Ikitoxin Inhibitor cystine knot Jingzhaotoxin Kainic acid Kaliseptine Kappa-bungarotoxin Kodaikanal mercury poisoning Kurtoxin Latrotoxin Lq2 Maitotoxin Margatoxin Maurotoxin Mercury (element) Methanol Methiocarb MPP+ MPTP Nemertelline Neosaxitoxin Nicotine N-Methylconiine Oenanthotoxin Oxalyldiaminopropionic acid Oxidopamine Oxotoxin Pahutoxin Palytoxin Pandinotoxin Para-Bromoamphetamine Para-Chloroamphetamine Para-Chloromethamphetamine Para-lodoamphetamine Penitrem A Phaiodotoxin Phenol Phoneutria nigriventer toxin-3 Phrixotoxin Polyacrylamide Poneratoxin Psalmotoxin Pumiliotoxin Quinolinic acid Raventoxin Resiniferatoxin Samandarin Saxitoxin Scyllatoxin Sea anemone neurotoxin Slotoxin SNX-482 Stichodactyla toxin Taicatoxin Taipoxin Tamapin Tertiapin Tetanospasmin Tetraethylammonium Tetramethylenedisulfotetramine Tetrodotoxin Tityustoxin Tricresyl phosphate TsIV Vanillotoxin Veratridine
(125) Antibodies
(126) Neurotransmission modulators also include antibodies that bind to neurotransmitters or neurotransmitter receptors listed in Tables 7 and 8 and decrease neurotransmission. These antibodies include blocking and neutralizing antibodies. Antibodies to neurotransmitters or neurotransmitter receptors listed in Tables 7 and 8 can be generated by those of skill in the art using well established and routine methods.
(127) Neuronal Growth Factor Modulators
(128) In some embodiments, the serotonin receptor inhibitor is administered with a neuronal growth factor modulator (e.g., an agent that decreases or increases neurogenic/axonogenic signals, e.g., a neuronal growth factor or neuronal growth factor mimic, or an agonist or antagonist of a neuronal growth factor or neuronal growth factor receptor). For example, the neuronal growth factor modulator is a neuronal growth factor listed in Table 12, e.g., a neuronal growth factor having the sequence referenced by accession number or Entrez Gene ID in Table 12, or an analog thereof, e.g., a sequence having at least 75%, 80%, 85%, 90%, 90%, 98%, 99% identity to the sequence referenced by accession number or Entrez Gene ID in Table 12. Neuronal growth factor modulators also include agonists and antagonists of neuronal growth factors and neuronal growth factor receptors listed in Table 12. A neuronal growth factor modulator may increase or decrease neurogenesis, neuronal growth, neuronal differentiation, neurite outgrowth, synapse formation, synaptic maturation, synaptic refinement, or synaptic stabilization. Neuronal growth factor modulators regulate tissue innervation (e.g., innervation of a lymph node) and the formation of synaptic connections between two or more neurons and between neurons and non-neural cells (e.g., between neurons and immune cells). A neuronal growth factor modulator may block one or more of these processes (e.g., through the use of antibodies that block neuronal growth factors or their receptors) or promote one or more of these processes (e.g., through the use of neuronal growth factors or analogs thereof). Neuronal growth factor modulators can increase or decrease one of the above-mentioned processes by 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, 200%, 500% or more.
(129) In some embodiments, the neuronal growth factor modulator is one that increases neurogenic/axonogenic signals, e.g., the method includes administering to the subject or contacting a cell with a neuronal growth factor modulator in an amount and for a time sufficient to increase neurogenesis or axonogenesis. For example, the neuronal growth factor modulator that leads to an increase in neurogenesis or axonogenesis is a neurotrophic factor. Relevant neurotrophic factors include NGF, BDNF, ProNGF, Sortilin, TGFβ and TGFβ family ligands and receptors (e.g., TGFβR1, TGFβR2, TGFβ1, TGFβ2 TGFβ4), GFRα family ligands and receptors (e.g., GFRα1, GFRα2, GFRα3, GFRα4, GDNF), CNTF, LIF, neurturin, artemin, persephin, neurotrophin, chemokines, cytokines, and others listed in Table 12. Receptors for these factors may also be targeted, as well as downstream signaling pathways including Jak-Stat inducers, and cell cycle and MAPK signaling pathways. In some embodiments, the neuronal growth factor modulator increases neurogenesis, axonogenesis or any of the processes mentioned above by administering, locally delivering, or stabilizing a neuronal growth factor listed in Table 12, or by upregulating, agonizing, or stabilizing a neuronal growth factor receptor listed in Table 12. In some embodiments, the neuronal growth factor modulator increases neurogenesis, axonogenesis or any of the processes mentioned above by stabilizing, agonizing, overexpressing, or upregulating a signaling protein encoded by a gene that is downstream of a neuronal growth factor. In some embodiments, the neuronal growth factor modulator increases neurogenesis, axonogenesis or any of the processes mentioned above by stabilizing, overexpressing, or upregulating a synaptic or structural protein. Neurogenesis, axonogenesis, neuronal growth, neuronal differentiation, neurite outgrowth, synapse formation, synaptic maturation, synaptic refinement, or synaptic stabilization can be increased in the subject at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80% or more, compared to before the administration. Neurogenesis, axonogenesis, neuronal growth, neuronal differentiation, neurite outgrowth, synapse formation, synaptic maturation, synaptic refinement, or synaptic stabilization can be increased in the subject between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%.
(130) In some embodiments, the neuronal growth factor modulator decreases neurogenic/axonogenic signals, e.g., the method includes administering to the subject or contacting a cell with a neuronal growth factor modulator in an amount and for a time sufficient to decrease neurogenesis, axonogenesis, or innervation. For example, the neuronal growth factor modulator that leads to a decrease in neurogenesis or axonogenesis is a blocking or neutralizing antibody against a neurotrophic factor. Relevant neurotrophic factors include NGF, BDNF, ProNGF, Sortilin, TGFβ and TGFβ family ligands and receptors (e.g., TGFβR1, TGFβR2, TGFβ1, TGFβ2 TGFβ4), GFRα family ligands and receptors (e.g., GFRα1, GFRα2, GFRα3, GFRα4, GDNF), CNTF, LIF, neurturin, artemin, persephin, neurotrophin, chemokines, cytokines, and others listed in Table 12. Receptors for these factors can also be targeted, as well as downstream signaling pathways including Jak-Stat inducers, and cell cycle and MAPK signaling pathways. In some embodiments, the neuronal growth factor modulator decreases neurogenesis, axonogenesis or any of the processes mentioned above by sequestering, blocking, antagonizing, degrading, or downregulating a neuronal growth factor or a neuronal growth factor receptor listed in Table 12. In some embodiments, the neuronal growth factor modulator decreases neurogenesis, axonogenesis or any of the processes mentioned above by blocking or antagonizing a signaling protein that is downstream of a neuronal growth factor. In some embodiments, the neuronal growth factor modulator decreases neurogenesis, axonogenesis or any of the processes mentioned above by blocking, disrupting, or antagonizing a synaptic or structural protein. Neurogenesis, axonogenesis, neuronal growth, neuronal differentiation, neurite outgrowth, synapse formation, synaptic maturation, synaptic refinement, synaptic stabilization, or tissue innervation can be decreased in the subject at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80% or more, compared to before the administration. Neurogenesis, axonogenesis, neuronal growth, neuronal differentiation, neurite outgrowth, synapse formation, synaptic maturation, synaptic refinement, synaptic stabilization, or tissue innervation can be decreased in the subject between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%. Neuronal growth factor blockers can be administered in any of the modalities described herein (e.g., antibody, small molecule, nucleic acid, polypeptide, or viral vector).
(131) In some embodiments, the neuronal growth factor modulator decreases the number of nerves in an affected tissue (e.g., a lymph node or site of inflammation). For example, the neuronal growth factor blocker is administered in an amount and for a time sufficient to decrease neurogenesis/axonogenesis.
(132) Neuronal growth factor blockers include antibodies that bind to neuronal growth factors or neuronal growth factor receptors and decrease their signaling (e.g., blocking antibodies). Exemplary neuronal growth factor blocking antibodies are listed below in Table 13. Antibodies to neuronal growth factors listed in Table 12 can also be generated by those of skill in the art using well established and routine methods.
(133) TABLE-US-00021 TABLE 12 NEURONAL GROWTH FACTORS Accession Entrez Gene Type Number Gene ID ARTN Ligand Q5T4W7 9048 BDNF Ligand P23560 627 BDNF-AS Ligand 497258 BEX1 Signaling Q9HBH7 55859 BEX3 Signaling Q00994 27018 CD34 Receptor P28906 947 CDNF Ligand Q49AH0 441549 CNTF Ligand P26441 1270 CNTFR Receptor P26992 1271 CRLF1 Receptor O75462 9244 CSPG5 Ligand O95196 10675 DCLK1 Signaling O15075 9201 DISC1 Signaling Q9NRI5 27185 DNAJC5 Signaling Q9H3Z4 80331 DPYSL2 Signaling Q16555 1808 DVL1 Signaling Q14640 1855 EFNA5 Ligand P52803 1946 EGR3 Signaling Q06889 1960 ENO2 Signaling P09104 2026 EphA1 Receptor P21709 2041 EphA10 Receptor Q5JZY3 284656 EphA2 Receptor P29317 1969 EphA3 Receptor P29320 2042 EphA4 Receptor P29317 2043 EphA5 Receptor P54756 2044 EphA6 Receptor Q9UF33 285220 EphA7 Receptor Q15375 2045 EphA8 Receptor P29322 2046 EphB1 Receptor P54762 2047 EphB2 Receptor P29323 2048 EphB3 Receptor P54753 2049 EphB4 Receptor P54760 2050 EphB6 Receptor O15197 2051 ETBR2 Receptor O60883 9283 FSTL4 Receptor Q6MZW2 23105 GDNF Ligand P39905 2668 GFRA1 Receptor P56159 2674 GFRA2 Receptor O00451 2675 GFRA3 Receptor O60609 2676 GFRA4 Receptor Q9GZZ7 64096 GPR37 Receptor O15354 2861 GPRIN1 Signaling Q7Z2K8 114787 GPRIN2 Signaling O60269 9721 GPRIN3 Signaling Q6ZVF9 285513 GRB2 Signaling P62993 2885 GZF1 Signaling Q9H116 64412 IFNA1 Ligand P01562 3439 IGF1 Ligand P05019 3479 IGF2 Ligand P01344 3481 IL11RA Receptor Q14626 3590 IL1B Ligand P01584 3553 IL3 Ligand P08700 3562 IL4 Ligand P05112 3565 IL6 Ligand P05231 3569 IL6R Receptor P08887 3570 IL6ST Signaling P40189 3572 INS Ligand P01308 3630 L1CAM Signaling P32004 3897 LIF Ligand P15018 3976 LIFR Receptor P42702 3977 MAGED1 Signaling Q9Y5V3 9500 MANF Ligand P55145 7873 NDNF Ligand Q8TB73 79625 NENF Ligand Q9UMX5 29937 NENFP1 Ligand 106480294 NENFP2 Ligand 100129880 NENFP3 Ligand 106481703 NGF Ligand P01138 4803 NGFR Receptor P08138 4804 NRG1 Ligand Q02297 3084 NRP1 Receptor O14786 8829 NRTN Ligand Q99748 902 NTF3 Ligand P20783 4908 NTF4 Ligand P34130 4909 NTRK1 Receptor P04629 4914 NTRK2 Receptor Q16620 4915 NTRK3 Receptor Q16288 4916 PDPK1 Signaling O15530 5170 PEDF Ligand P36955 5176 PLEKHH3 Signaling Q7Z736 79990 PSAP Ligand P07602 5660 PSEN1 Signaling P49768 5663 PSPN Ligand O70300 5623 PTN Ligand P21246 5764 RELN Ligand P78509 5649 RET Signaling P07949 5979 ROR1 Receptor Q01973 4919 ROR2 Receptor Q01974 4920 RPS6KA3 Signaling P51812 6197 SDC3 Receptor O75056 9672 SEMA3E Ligand O15041 9723 SERPINE2 Ligand P07093 5270 SERPINF1 Ligand P36955 5176 SHC1 Signaling P51812 6464 SNTG1 Biosynthesis P07602 54212 SORCS1 Receptor O75056 114815 SORCS2 Receptor O15041 57537 SORCS3 Receptor P07093 22986 SORT1 Receptor Q99523 6272 SULF1 Signaling Q81WU6 23213 SULF2 Signaling Q8IWU5 55959 TGFB1 Ligand P01137 7040 TGFB2 Ligand P61812 7042 TGFB3 Ligand P10600 7043 TMEM158 Receptor Q8WZ71 25907 TNF Ligand P01375 7124 TPM3 Receptor P06753 7170 VEGFA Ligand P15692 7422 VEGFB Ligand P49765 7423 VGF Ligand O15240 7425 XCR1 Receptor P46094 2829 ZN274 Signaling Q96G06 10782
(134) TABLE-US-00022 TABLE 13 NEURONAL GROWTH FACTOR ANTIBODIES Neuronal Growth Factor Antibody Company BDNF 38B8 (agonist antibody) Pfizer BDNF 29D7 (agonist antibody) Pfizer EphA3 KB004 KaloBios Pharmaceuticals, Inc. IFNA1 Faralimomab Creative Biolabs IFNA1 Sifalimumab (MEDI-545) MedImmune IFNA1 Rontalizumab Genentech IGF Figitumumab (CP-751,871) - Pfizer an IGR-1R MAb IGF SCH717454 (Robatumamab, Merck inhibits IGF initiated phosphorylation) IGF Cixutumumab (IGF-1R Eli Lilly antibody) IGF Teprotumumab (IGF-1R Genmab/Roche blocking antibody) IGF-2 Dusigitumab MedImmune/AstraZeneca IGF-2 DX-2647 Dyax/Shire IGF Xentuzumab Boehringer Ingelheim/Eli Lilly IGF Dalotuzumab (IGFR1 blocking Merck & Co. antibody) IGF Figitumumab (IGFR1 blocking Pfizer antibody) IGF Ganitumab (IGFR1 blocking Amgen antibody) IGF Robatumumab (IGFR1 Roche/Schering-Plough blocking antibody) IL1B Canakinumab Novartis IL1B APX002 Apexigen IL1B Gevokizumab XOMA IL4 Pascolizumab GlaxoSmithKline IL4 Dupilumab Regeneraon/Sanofi IL6 Siltuximab Janssen Biotech, Inc. IL6 Olokizumab UCB/R-Pharm IL6 Elsilimomab Orphan Pharma International IL6 Sirukumab Centocor IL6 Clazakizumab Bristol Myers Squib/Alder Biopharmaceuticals IL6 Gerilimzumab (ARGX-109) arGEN-X/RuiYi IL6 FE301 Ferring Pharmaceuticals IL6 FM101 Femta Pharmaceuticals IL-6R Sarilumab (directed against Regeneron/Sanofi IL6R) IL-6R Tocilizumab Hoffmann-La Roche/Chugai IL-6R Sapelizumab Chugai IL-6R Vobarilizumab Ablynx L1CAM AB417 Creative biolabs L1CAM L1-9.3 Creative biolabs L1CAM L1-14.10 Biolegend NGF Tanezumab Pfizer NGF Fulranumab (JNJ-42160443), Amgen NGF MNAC13 (anti-TrkA, the NGF Creative Biolabs receptor) NGF mAb 911 Rinat/Pfizer NGF Fasinumab Regeneron/Teva NRG1 538.24 Hoffman-La Roche NRP1 Vesencumab Genentech/Roche ROR1 Cirmtuzumab Oncternal Therapeutics SAP G5K2398852 GlaxoSmithKline TGFβ Fresolimumab (pan-TGFβ Genzyme/Aventis antibody) TGFβ IMC-TR1 (LY3022859) (MAb Eli Lilly against TGFβRII) TGFβ T6M1 (anti-TGFβ1 MAb) Eli Lilly TGFβ2 Lerdelimumab (CAT-152) Genzyme TGFβ1 Metelimumab Genzyme TGFβ1 LY2382770 Eli Lilly TGFβ PF-03446962 (MAb against Pfizer TGFβRI) TNF Infliximab Janssen Biotech, Inc. TNF Adalimumab AbbVie Inc. TNF Certolizumab pegol UCB TNF Golimumab Janssen Biotech, Inc. TNF Afelimomab TNF Placulumab Teva Pharmaceutical Industries, Inc. TNF Nerelimomab Chiron/Celltech TNF Ozoralizumab Pfizer/Ablynx VEGFA Bevacizumab Genentech VEGFA Ranibizumab Genentech VEGF Alacizumab pegol (anti- UCB VEGFR2) VEGFA Brolucizumab Novartis VEGF Icrucumab (anti-VEGFR1) Eli Lilly VEGF Ramucirumab (anti-VEGFR2) Eli Lilly
(135) Neuronal growth factor modulators also include agents that agonize or antagonize neuronal growth factors and neuronal growth factor receptors. For example, neuronal growth factor modulators include TNF inhibitors (e.g., etanercept, thalidomide, lenalidomide, pomalidomide, pentoxifylline, bupropion, and DOI), TGFβ1 inhibitors, (e.g., disitertide (P144)), TGFβ2 inhibitors (e.g., trabedersen (AP12009)). Exemplary neuronal growth factor agonists and antagonists are listed in Table 14.
(136) TABLE-US-00023 TABLE 14 NEURONAL GROWTH FACTOR AGONISTS AND ANTAGONISTS Agonist Antagonist TrkA NGF, amitriptyline, and ALE-0540 gambogic amide, gambogic acid TrkB BDNF, NT3, NT4, 3,7- ANA-12, cyclotraxin B, and Dihydroxyflavone, 3,7,8, gossypetin 2′-Tetrahydroxyflavone, 4′-Dimethylamino-7,8- dihydroxyflavone, 7,3′- Dihydroxyflavone, 7,8- Dihydroxyflavone, 7,8,2′- Trihydroxyflavone, 7,8,3′- Trihydroxyflavone, Amitriptyline, Deoxygedunin, Diosmetin, HIOC, LM22A-4, N- Acetylserotonin, Norwogonin (5,7,8-THF), R7, LM22A4, and TDP6 Pan-Trk entrectinib (RXDX-101), AG receptor 879, GNF 5837, GW 441756, and PF 06273340 GFRα1R GDNF and XIB4035 VEGF AEE 788, AG 879, AP 24534, receptor axitinib, DMH4, GSK 1363089, Ki 8751, RAF 265, SU 4312, SU 5402, SU 5416, SU 6668, sunitinib, toceranib, vatalanib, XL 184, ZM 306416, and ZM 323881 TGFβRI galunisertib (LY2157299), TEW-7197, SB-431542, A 83-01, D 4476, GW 788388, LY 364947, R 268712, RepSox, SB 505124, SB 525334, and SD 208
(137) In any of the combination therapy approaches described herein, the first and second therapeutic agent (e.g., a serotonin receptor activator described herein and the additional therapeutic agent) are administered simultaneously or sequentially, in either order. The first therapeutic agent may be administered immediately, up to 1 hour, up to 2 hours, up to 3 hours, up to 4 hours, up to 5 hours, up to 6 hours, up to 7 hours, up to, 8 hours, up to 9 hours, up to 10 hours, up to 11 hours, up to 12 hours, up to 13 hours, 14 hours, up to hours 16, up to 17 hours, up 18 hours, up to 19 hours up to 20 hours, up to 21 hours, up to 22 hours, up to 23 hours up to 24 hours or up to 1-7, 1-14, 1-21 or 1-30 days before or after the second therapeutic agent.
(138) Diagnosis and Prognosis of Serotonin Receptor-Associated Inflammatory or Autoimmune Diseases or Conditions
(139) The methods described herein include methods of diagnosing or identifying patients with a serotonin receptor-associated inflammatory or autoimmune disease or condition. Subjects who can be diagnosed or identified as having a serotonin receptor-associated inflammatory or autoimmune disease or condition are subjects who have an inflammatory or autoimmune disease or condition (e.g., subjects identified as having an inflammatory or autoimmune disease or condition), or subjects suspected of having an inflammatory or autoimmune disease or condition. Subjects can be diagnosed or identified as having a serotonin receptor-associated inflammatory or autoimmune disease or condition based on screening of patient samples (e.g., immune cells collected from a subject, e.g., macrophages). Serotonin receptor expression (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7) can be assessed in a sample of immune cells isolated from a subject using standard techniques known in the art, such as immunohistochemistry, western blot analysis, quantitative RT-PCR, RNA sequencing, fluorescent in situ hybridization, cDNA microarray, and droplet digital PCR. Serotonin receptor expression can be assessed by comparing measurements obtained from immune cells collected from a subject having or suspected of having an inflammatory or autoimmune disease or condition to measurements of serotonin receptor expression obtained from a reference sample (e.g., immune cells of the same type collected from a subject that does not have an inflammatory or autoimmune disease or condition or a cell that does not express serotonin receptor, e.g., a HEK cell). Reference samples can be obtained from healthy subjects (e.g., subjects without an inflammatory or autoimmune disease or condition), or they can be obtained from databases in which average measurements of serotonin receptor expression are cataloged for immune cells from healthy subjects (e.g., subjects without an inflammatory or autoimmune disease or condition).
(140) Subjects are diagnosed or identified as having a serotonin receptor-associated inflammatory or autoimmune disease or condition if serotonin receptor expression (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7) is decreased in the sample of immune cells from the subject compared to the reference sample. A decrease of serotonin receptor expression of 1.1-fold or more (e.g., 1.1, 1.2, 1.3, 1.4, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0-fold or more) in the sample isolated from the subject compared to the reference indicates that the subject has a serotonin receptor-associated inflammatory or autoimmune disease or condition. Subjects can also be diagnosed or identified as having a serotonin receptor-associated inflammatory or autoimmune disease or condition (e.g., an inflammatory or autoimmune disease or condition in which serotonin receptor is functional in immune cells) by contacting an immune cell isolated from the subject with a serotonin receptor antagonist and evaluating pro-inflammatory cytokine production (e.g., IL-8 secretion). An increase in pro-inflammatory cytokine production by 10% or more (e.g., 10%, 15%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 99%, or more) indicates that the immune cell expresses a functional serotonin receptor (e.g., the subject has a serotonin receptor-associated inflammatory or autoimmune disease or condition). Serotonin receptors can also be evaluated in vivo using radioligand labeling with PET/SPECT radioligands, such as those described in Paterson et al., Med Res Rev. 33:54, 2013. Subjects diagnosed or identified as having a serotonin receptor-associated inflammatory or autoimmune disease or condition can be treated with the methods and compositions described herein (e.g., serotonin receptor activators). Subjects with an autoimmune or inflammatory disease or condition can also be treated with the methods and compositions described herein if an immune cell from the subject (e.g., a macrophage) is found to express one or more serotonin receptors (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7).
(141) The methods described herein also include methods of predicting patient response (e.g., the response of an inflammatory or autoimmune disease or condition in a subject) to serotonin receptor activators in order to determine whether serotonin receptor activators can be used for treatment of an inflammatory or autoimmune disease or condition. In some embodiments, a sample (e.g., an immune cell or tissue sample) is isolated from a subject and contacted with one or more serotonin receptor activators or serotonin receptor-specific activators (e.g., samples are cultured and contacted with one or more activators in vitro). The response of the sample (e.g., immune cell or tissue sample) to the one or more serotonin receptor activators or serotonin receptor-specific activators is evaluated to predict response to treatment. Responses that are evaluated include immune cell migration, proliferation, recruitment, lymph node homing, lymph node egress, differentiation, activation, polarization, cytokine production, degranulation, maturation, ADCC, ADCP, antigen presentation, or immune cell serotonin receptor expression (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7). A decrease of at least 5% or more (e.g., 5%, 10%, 15%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 99%, or more) in migration, proliferation, recruitment, lymph node egress, differentiation, activation, polarization, cytokine production (e.g., IL-8 production), degranulation, maturation, ADCC, ADCP, antigen presentation, or markers of inflammation in treated cells compared to untreated or control-treated cells, or an increase of at least 5% or more (e.g., 5%, 10%, 15%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 99%, or more) in lymph node homing or serotonin receptor expression in treated cells compared to untreated or control-treated cells indicates that the inflammatory or autoimmune disease or condition would respond to treatment with a serotonin receptor activator.
(142) The methods used above to diagnose or identify a subject with a serotonin receptor-associated inflammatory or autoimmune disease or condition can also be used to predict patient response (e.g., the response of an inflammatory or autoimmune disease or condition in a subject) to treatment with a serotonin receptor activator. If the expression of one or more serotonin receptors (e.g., expression of one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7) is decreased in an immune cell sample compared to a reference (e.g., 1.1, 1.2, 1.3, 1.4, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0-fold or more lower in the inflammatory or autoimmune disease or condition sample compared to the reference), the subject can be predicted to respond to treatment with a serotonin receptor activator. Subjects predicted to respond to treatment with a serotonin receptor activator or serotonin receptor-specific activator can be treated using the methods and compositions described herein (e.g., serotonin receptor activators).
(143) Methods of Treatment
(144) Administration
(145) An effective amount of a serotonin receptor activator described herein for treatment of inflammatory or autoimmune disease or condition can be administered to a subject by standard methods. For example, the agent can be administered by any of a number of different routes including, e.g., intravenous, intradermal, subcutaneous, percutaneous injection, oral, transdermal (topical), or transmucosal. The serotonin receptor activator can be administered orally or administered by injection, e.g., intramuscularly, or intravenously. The most suitable route for administration in any given case will depend on the particular agent administered, the patient, the particular disease or condition being treated, pharmaceutical formulation methods, administration methods (e.g., administration time and administration route), the patient's age, body weight, sex, severity of the diseases being treated, the patient's diet, and the patient's excretion rate. The agent can be encapsulated or injected, e.g., in a viscous form, for delivery to a chosen site, e.g., a lymph node or site of inflammation. The agent can be provided in a matrix capable of delivering the agent to the chosen site. Matrices can provide slow release of the agent and provide proper presentation and appropriate environment for cellular infiltration. Matrices can be formed of materials presently in use for other implanted medical applications. The choice of matrix material is based on any one or more of: biocompatibility, biodegradability, mechanical properties, and cosmetic appearance and interface properties. One example is a collagen matrix.
(146) The agent (e.g., serotonin receptor activator, e.g., polypeptide, small molecule, nucleic acid, or antibody) can be incorporated into pharmaceutical compositions suitable for administration to a subject, e.g., a human. Such compositions typically include the agent and a pharmaceutically acceptable carrier. As used herein the term “pharmaceutically acceptable carrier” is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration. The use of such media and agents for pharmaceutically active substances are known. Except insofar as any conventional media or agent is incompatible with the active compound, such media can be used in the compositions of the invention. Supplementary active compounds can also be incorporated into the compositions.
(147) A pharmaceutical composition can be formulated to be compatible with its intended route of administration. Solutions or suspensions used for parenteral, intradermal, or subcutaneous application can include the following components: a sterile diluent such as water for injection, saline solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents such as ethylenediaminetetraacetic acid; buffers such as acetates, citrates or phosphates and agents for the adjustment of tonicity such as sodium chloride or dextrose. pH can be adjusted with acids or bases, such as hydrochloric acid or sodium hydroxide. The parenteral preparation can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic.
(148) Pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion. For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants. Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as mannitol, sorbitol, and sodium chloride in the composition. Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.
(149) Sterile injectable solutions can be prepared by incorporating the active compound (e.g., a serotonin receptor activator described herein) in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and freeze-drying which yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
(150) Oral compositions generally include an inert diluent or an edible carrier. They can be enclosed in gelatin capsules or compressed into tablets. For the purpose of oral therapeutic administration, the active compound can be incorporated with excipients and used in the form of tablets, troches, or capsules. Oral compositions can also be prepared using a fluid carrier for use as a mouthwash, wherein the compound in the fluid carrier is applied orally and swished and expectorated or swallowed. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition. The tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, or corn starch; a lubricant such as magnesium stearate; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring.
(151) Systemic administration can also be by transmucosal or transdermal means. For transmucosal or transdermal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known, and include, for example, for transmucosal administration, detergents, bile salts, and fusidic acid derivatives. Transmucosal administration can be accomplished through the use of nasal sprays or suppositories. For transdermal administration, the active compounds are formulated into ointments, salves, gels, or creams as generally known in the art.
(152) The active compounds can be prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems. Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art. Liposomal suspensions (including liposomes targeted to infected cells with monoclonal antibodies to viral antigens) can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art.
(153) Nucleic acid molecule agents described herein can be administered directly (e.g., therapeutic mRNAs) or inserted into vectors used as gene therapy vectors. Gene therapy vectors can be delivered to a subject by, for example, intravenous injection, local administration (see U.S. Pat. No. 5,328,470) or by stereotactic injection (see, e.g., Chen et al., PNAS 91:3054 1994). The pharmaceutical preparation of the gene therapy vector can include the gene therapy vector in an acceptable diluent, or can include a slow release matrix in which the gene delivery vehicle is embedded. Alternatively, where the complete gene delivery vector can be produced intact from recombinant cells, e.g., retroviral vectors, the pharmaceutical preparation can include one or more cells which produce the gene delivery system.
(154) The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.
(155) Methods of formulating pharmaceutical agents are known in the art, e.g., Niazi, Handbook of Pharmaceutical Manufacturing Formulations (Second Edition), CRC Press 2009, describes formulation development for liquid, sterile, compressed, semi-compressed and OTC forms. Transdermal and mucosal delivery, lymphatic system delivery, nanoparticles, controlled drug release systems, theranostics, protein and peptide drugs, and biologics delivery are described in Wang et al., Drug Delivery: Principles and Applications (Second Edition), Wiley 2016; formulation and delivery of peptide and protein agent is described, e.g., in Banga, Therapeutic Peptides and Proteins: Formulation, Processing, and Delivery Systems (Third Edition), CRC Press 2015.
(156) Local Administration
(157) The serotonin receptor activators described herein can be administered locally, e.g., to the site of inflammatory or autoimmune disease or condition in the subject. Examples of local administration include epicutaneous, inhalational, intra-articular, intrathecal, intravaginal, intravitreal, intrauterine, intra-lesional administration, lymph node administration, intratumoral administration and administration to a mucous membrane of the subject, wherein the administration is intended to have a local and not a systemic effect. As an example, for the treatment of an inflammatory or autoimmune disease or condition described herein, the serotonin receptor activator may be administered locally (e.g., to or near a lymph node or lymphoid organ, a barrier tissue, a wound, gut, skin, airway, or spleen) in a compound-impregnated substrate such as a wafer, microcassette, or resorbable sponge placed in direct contact with the affected tissue. Alternatively, the serotonin receptor activator is infused into the brain or cerebrospinal fluid using standard methods. As another example, for a cardiac inflammatory or autoimmune disease or condition, the serotonin receptor activator may be delivered locally, for example, to the cardiac tissue (e.g., myocardium, pericardium, or endocardium) by direct intracoronary injection through the chest wall or using standard percutaneous catheter based methods. As yet another example, a pulmonary inflammatory or autoimmune disease or condition described herein (e.g., asthma) may be treated, for example, by administering the serotonin receptor activator locally by inhalation, e.g., in the form of an aerosol spray from a pressured container or dispenser which contains a suitable propellant, e.g., a gas such as carbon dioxide or a nebulizer. A serotonin receptor activator for use in the methods described herein can be administered to a lymph node. In certain embodiments, the agent is administered to a mucous membrane of the subject.
(158) Combination Therapy
(159) The serotonin receptor activators described herein may be administered in combination with one or more additional therapies (e.g., 1, 2, 3 or more additional therapeutic agents). The two or more agents can be administered at the same time (e.g., administration of all agents occurs within 15 minutes, 10 minutes, 5 minutes, 2 minutes or less). The agents can also be administered simultaneously via co-formulation. The two or more agents can also be administered sequentially, such that the action of the two or more agents overlaps and their combined effect is such that the reduction in a symptom, or other parameter related to the disorder is greater than what would be observed with one agent or treatment delivered alone or in the absence of the other. The effect of the two or more treatments can be partially additive, wholly additive, or greater than additive (e.g., synergistic). Sequential or substantially simultaneous administration of each therapeutic agent can be effected by any appropriate route including, but not limited to, oral routes, intravenous routes, intramuscular routes, local routes, and direct absorption through mucous membrane tissues. The therapeutic agents can be administered by the same route or by different routes. For example, a first therapeutic agent of the combination may be administered by intravenous injection while a second therapeutic agent of the combination can be administered locally in a compound-impregnated microcassette. The first therapeutic agent may be administered immediately, up to 1 hour, up to 2 hours, up to 3 hours, up to 4 hours, up to 5 hours, up to 6 hours, up to 7 hours, up to, 8 hours, up to 9 hours, up to 10 hours, up to 11 hours, up to 12 hours, up to 13 hours, 14 hours, up to hours 16, up to 17 hours, up 18 hours, up to 19 hours up to 20 hours, up to 21 hours, up to 22 hours, up to 23 hours up to 24 hours or up to 1-7, 1-14, 1-21 or 1-30 days before or after the second therapeutic agent.
(160) For use in treating inflammatory and autoimmune related diseases or conditions, the second agent may be a disease-modifying anti-rheumatic drug (DMARD), a biologic response modifier (a type of DMARD), a corticosteroid, a nonsteroidal anti-inflammatory medication (NSAID). In some embodiments, the second agent is prednisone, prednisolone, methylprednisolone, methotrexate, hydroxycholorquine, sulfasalazine, leflunomide, cyclophosphamide, azathioprine, or a biologic such as tofacitinib, adalimumab, abatacept, anakinra, kineret, certolizumab, etanercept, golimumab, infliximab, rituximab or tocilizumab. For example, if the disease is RA, the second agent may be one or more of: prednisone, prednisolone and methylprednisolone, methotrexate, hydroxycholorquine, sulfasalazine, leflunomide, cyclophosphamide and azathioprine, tofacitinib, adalimumab, abatacept, anakinra, kineret, certolizumab, etanercept, golimumab, infliximab, rituximab or tocilizumab. In some embodiments, the second agent is 6-mercaptopurine, 6-thioguanine, abatacept, adalimumab, alemtuzumab (Lemtrada), aminosalicylates (5-aminoalicylic acid, sulfasalazine, mesalamine, balsalazide, olsalazine), antibiotics, anti-histamines, Anti-TNFα (infliximab, adalimumab, certolizumab pegol, natalizumab) Ustekinumab), azathioprine, belimumab, beta interferon, calcineurin inhibitors, certolizumab, corticosteroids (prednisone, methylprednisolone), cromolyn, cyclosporin A, cyclosporine, dimethyl fumarate (tecfidera), etanercept, fingolimod (Gilenya), fumaric acid esters, glatiramer acetate (Copaxone), golimumab, hydroxyurea, IFNγ, IL-11, infliximab, leflunomide, leukotriene receptor antagonist, long-acting beta2 agonist, methotrexate, mitoxantrone, mycophenolate mofetil, natalizumab (tysabri), NSAIDs, ocrelizumab, pimecrolimus, probiotics (VSL #3), retinoids, rituximab, salicylic acid, short-acting beta2 agonist, sulfasalazine, tacrolimus, teriflunomide (Aubagio), theophylline, tocilizumab, ustekinumab (anti-IL12/IL23), and vedolizumab (Anti alpha3 beta7 integrin).
(161) Dosing
(162) Subjects that can be treated as described herein are subjects with an inflammatory or autoimmune disease or condition or condition. The methods described herein may include a step of selecting a treatment for a patient. The method includes (a) identifying (e.g., diagnosing) a patient who has an inflammatory or autoimmune disease or condition, and (b) selecting a serotonin receptor activator, e.g., a serotonin receptor activator described herein, to treat the condition in the patient. In some embodiments, the method includes administering the selected treatment (e.g., an effective amount of a serotonin receptor activator) to the subject. In some embodiments, the subject has had denervation (e.g., surgical denervation or traumatic denervation such as from spinal cord injury).
(163) In some embodiments, the method includes administering the selected treatment to the subject.
(164) In some embodiments, the agent is administered in an amount and for a time effective to result in one of (or more, e.g., 2 or more, 3 or more, 4 or more of): (a) reduced auto-antibody levels, (b) reduced inflammation, (c) increased organ function (d) reduced pain, (e) decreased rate or number of relapses or flare-ups of the disease, (f) increased quality of life.
(165) The methods described herein can include profiling an immune cell to determine whether it expresses one or more serotonin receptors (e.g., one or more serotonin receptors listed in Table 1, e.g., HTR1F, HTR2B, HTR2C, HTR3A, HTR6, and/or HTR7). Profiling can be performed using RNA sequencing, microarray analysis, or serial analysis of gene expression (SAGE). Other techniques that can be used to assess serotonin receptor expression include quantitative RT-PCR. Profiling results can be confirmed using other methods such as immunohistochemistry, western blot analysis, flow cytometry, or southern blot analysis. Profiling results can be used to determine which serotonin receptor activator should be administered to treat the patient.
(166) In some embodiments, a serotonin receptor activator administered according to the methods described herein does not have a direct effect on the central nervous system (CNS) or gut. Any effect on the CNS or gut is reduced compared to the effect observed if the serotonin receptor activator is administered directly to the CNS or gut. In some embodiments, direct effects on the CNS or gut are avoided by modifying the serotonin receptor activator not to cross the BBB, as described herein above, or administering the agent locally to a subject.
(167) Subjects with an autoimmune/inflammatory disease or condition are treated with an effective amount of a serotonin receptor activator. The methods described herein also include contacting immune cells with an effective amount of a serotonin receptor activator. In some embodiments, an effective amount of a serotonin receptor activator is an amount sufficient to decrease the development of HEVs or TLOs, decrease immune cell (e.g., T cell, B cell, NK cell, ILC1, ILC2, ILC3, monocyte, macrophage (M1 and M2), dendritic cell, or antigen presenting cell) migration, decrease immune cell proliferation, decrease immune cell recruitment, increase immune cell lymph node homing, decrease immune cell lymph node egress, decrease immune cell differentiation, decrease immune cell activation, decrease immune cell polarization, decrease immune cell cytokine production, decrease immune cell degranulation, decrease immune cell maturation, decrease immune cell ADCC, decrease immune cell ADCP, decrease immune cell antigen presentation, reduce immune cell serotonin receptor expression, treat the autoimmune or inflammatory condition, reduce symptoms of an autoimmune or inflammatory condition, reduce inflammation, reduce auto-antibody levels, increase organ function, or decrease rate or number of relapses or flare-ups.
(168) In some embodiments, the method includes administering the selected treatment to the subject.
(169) In certain embodiments, a serotonin receptor activator administered according to the methods described herein does not have a direct effect on the central nervous system (CNS) or gut. Any effect on the CNS or gut is reduced compared to the effect observed if the serotonin receptor activator is administered directly to the CNS or gut. In some embodiments, direct effects on the CNS or gut are avoided by modifying the serotonin receptor activator not to cross the BBB, as described herein above, or administering the agent locally to a subject.
(170) The methods described herein may also include a step of assessing the subject for a parameter of immune response, e.g., assessing the subject for one or more (e.g., 2 or more, 3 or more, 4 or more) of: Th2 cells, T cells, circulating monocytes, neutrophils, peripheral blood hematopoietic stem cells, macrophages, mast cell degranulation, activated B cells, NKT cells, macrophage phagocytosis, macrophage polarization, antigen presentation, immune cell activation, immune cell proliferation, immune cell lymph node homing or egress, T cell differentiation, immune cell recruitment, immune cell migration, lymph node innervation, dendritic cell maturation, HEV development, TLO development, or cytokine production. In embodiments, the method includes measuring a cytokine or marker associated with the particular immune cell type, as listed in Table 4 (e.g., performing an assay listed in Table 4 for the cytokine or marker). In some embodiments, the method includes measuring a chemokine, receptor, or immune cell trafficking molecule, as listed in Tables 5 and 6 (e.g., performing an assay to measure the chemokine, marker, or receptor). The assessing may be performed after the administration, before the first administration and/or during a course a treatment, e.g., after a first, second, third, fourth or later administration, or periodically over a course of treatment, e.g., once a month, or once every 3 months. In one embodiment, the method includes assessing the subject prior to treatment or first administration and using the results of the assessment to select a subject for treatment. In certain embodiments, the method also includes modifying the administering step (e.g., stopping the administration, increasing or decreasing the periodicity of administration, increasing or decreasing the dose of the serotonin receptor activator) based on the results of the assessment. For example, in embodiments where decreasing a parameter of immune response described herein is desired (e.g., embodiments where a decrease in Th2 cells is desired), the method includes stopping the administration if a marker of Th2 cells is not decreased at least 5%, 10%, 15%, 20%, 30%, 40%, 50% or more; or the method includes increasing the periodicity of administration if the marker of Th2 cells is not decreased at least 5%, 10%, 15%, 20% or more; or the method includes increasing the dose of the serotonin receptor activator if the marker of Th2 cells is not decreased at least 5%, 10%, 15%, 20% or more.
(171) In certain embodiments, immune effects (e.g., immune cell activities) are modulated in a subject (e.g., a subject having an inflammatory or autoimmune condition) or in a cultured cell by at least 1%, 2%, 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 50%, 60%, 70%, 80%, compared to before an administration, e.g., of a dosing regimen, of a serotonin receptor activator such as those described herein. In certain embodiments, the immune effects are modulated in the subject or a cultured cell between 5-20%, between 5-50%, between 10-50%, between 20-80%, between 20-70%, between 50-100%, between 100-500%. The immune effects described herein may be assessed by standard methods:
(172) The serotonin receptor activators described herein are administered in an amount (e.g., an effective amount) and for a time sufficient to effect one of the outcomes described above. The serotonin receptor activator may be administered once or more than once. The serotonin receptor activator may be administered once daily, twice daily, three times daily, once every two days, once weekly, twice weekly, three times weekly, once biweekly, once monthly, once bimonthly, twice a year, or once yearly. Treatment may be discrete (e.g., an injection) or continuous (e.g., treatment via an implant or infusion pump). Subjects may be evaluated for treatment efficacy 1 week, 2 weeks, 1 month, 2 months, 3 months, 4 months, 5 months, 6 months or more following administration of a serotonin receptor activator depending on the serotonin receptor activator and route of administration used for treatment. Depending on the outcome of the evaluation, treatment may be continued or ceased, treatment frequency or dosage may change, or the patient may be treated with a different serotonin receptor activator. Subjects may be treated for a discrete period of time (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, or 12 months) or until the disease or condition is alleviated, or treatment may be chronic depending on the severity and nature of the disease or condition being treated.
(173) Kits
(174) The invention also features a kit containing (a) a pharmaceutical composition including a serotonin receptor activator described herein, and (b) instructions for administering the pharmaceutical composition to treat an inflammatory or autoimmune disease or condition.
EXAMPLES
(175) The following examples are provided to further illustrate some embodiments of the present invention, but are not intended to limit the scope of the invention; it will be understood by their exemplary nature that other procedures, methodologies, or techniques known to those skilled in the art may alternatively be used.
Example 1—Identification of Serotonin Receptor Expression in Macrophages
(176) CD14+ monocytes were isolated from human PBMCs using negative magnetic bead selection (Stemcell Technologies) on day 0. Cells were cultured two days with M-CSF to differentiate monocytes to macrophages. On day 3, macrophages were polarized to M1-like macrophages with IFNγ and LPS; and M2-like macrophages with IL4, IL10, and TGFβ. Cells were harvested on day 6. The cells were lysed and RNA was extracted using an RNA extraction kit (Qiagen). qPCR was performed using integrated fluidic circuits (IFCs) run on a real-time PCR machine (Fluidigm) with primers specific for HTR2B, HTR2C, and HTR7 (Life Technologies). Gene expression was normalized to HPRT1. Expression level was calculated by 2{circumflex over ( )}(−delta CT), where delta CT is (GOI Ct—HPRT Ct).
(177) Gene expression for HTR2B and HTR7 in M1-like and M2-like macrophages was determined. Both HTR2B and HTR7 expression levels were higher on M1-like macrophages, as shown in Table 15 below.
(178) TABLE-US-00024 TABLE 15 EXPRESSION OF SEROTONIN RECEPTORS IN M1- AND M2-LIKE MACROPHAGES Expression Level Cell Type Gene Name (Relative to HPRT1) M1-like Macrophages HTR2B (Entrez: 3357) 0.7687 M2-like Macrophages HTR2B (Entrez: 3357) 0.0177 M1-like Macrophages HTR7 (Entrez: 3363) 0.0162 M2-like Macrophages HTR7 (Entrez: 3363) 0.0068
Example 2—Examination of Target Expression in Immune Cells
(179) The Immunological Genome Project (ImmGen) dataset of mouse immune cell gene expression (www.immgen.org) was examined for expression of serotonin receptors in different cell subsets. The expression data was generated by RNAseq on sorted mouse immune cells and quantified using the DESeq2 algorithm (Love et al., Genome Biology 15:550, 2014). The output of the DESeq2 algorithm was expression level, in arbitrary units, normalized to an internal factor derived from the sequencing depth of the sample.
(180) Mouse cells were sorted from MC38 (C57BL6 murine colon adenocarcinoma cells) syngeneic tumors. Cells were sorted on an Aria sorter using the following markers: dendritic cells (CD45+ live CD19− CD3− CD11 b+CD11c+), neutrophils (CD45+ live CD19− CD3− CD11 b+Ly6c lo Ly6G hi), monocytes (CD45+ live CD19− CD3− CD11b+Ly6c hi F4/80 lo), M2-like macrophages (CD45+ live CD19-CD3− CD11b+F4/80 hi). Cells were lysed and RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was submitted for Smart-Seq2 (Illumina). Median based normalization was performed with DESeq2.
(181) HTR2B, HTR2C and HTR7 were found to be expressed on multiple types of myeloid lineage cells, including macrophages and dendritic cells, as shown in Table 16 below.
(182) TABLE-US-00025 TABLE 16 EXPRESSION OF SEROTONIN RECEPTORS IN MOUSE IMMUNE CELLS Expression Level (Relative Cell Type Gene Name to HPRT1) Splenic Dendritic Cells HTR2B (Entrez: 3357) 22.12 Peritoneal Macrophages HTR2B (Entrez: 3357) 6.51 Alveolar Macrophages HTR2C (Entrez: 3358) 12.87 Alveolar Macrophages HTR2C (Entrez: 3358) 329.65 Splenic Dendritic Cells HTR7 (Entrez: 3363) 229.74 Tumor-infiltrating Dendritic Cells HTR7 (Entrez: 3363) 89.49 Tumor-infiltrating M2 HTR7 (Entrez: 3363) 114.87 Macrophages Tumor-infiltrating Monocytes HTR7 (Entrez: 3363) 122.35 Tumor-infiltrating Neutrophils HTR7 (Entrez: 3363) 68.70
Example 3—Modulation of Serotonin Receptors with Serotonin Receptor Agonists Decreases IL8 Secretion in Immune Cells
(183) CD14+ monocytes were isolated from human PBMCs using negative magnetic bead selection (Stemcell Technologies) on day 0. Cells were cultured with M-CSF to differentiate monocytes to macrophages. On day 6, cells were treated with LP44 (high affinity 5-HT7 agonist), BW 723C86 hydrochloride (5-HT2B agonist), MK 212 hydrochloride (5-HT2C agonist) (Sigma-Aldrich), at concentrations 1 μM and 10 μM overnight. Supernatant was collected and bead-based immunoassays (Biolegend) were performed to detect changes in cytokine secretion.
(184) Across multiple human donors, secretion of the inflammatory cytokine, IL8, by macrophages was decreased after addition of each of the HTR2B, HTR2C, and HTR7 agonists, as show in Table 17 below.
(185) TABLE-US-00026 TABLE 17 IL-8 SECRETION BY MACROPHAGES INCUBATED WITH SEROTONIN RECEPTOR AGONISTS Fold change of IL-8 (Normalized to Macs + LPS Sample with no compound treatment) Macs alone 1.00 Macs + LP44 (1 μM) 0.340 Macs + LP44 (10 μM) 0.427 Macs + BW723086 (1 μM) 0.693 Macs + BW723086 (10 μM) 0.527 Macs + MK212 (1 μM) 0.502 Macs + MK212 (10 μM) 0.484
Example 4—Administration of a Serotonin Receptor Activator to Treat Local Intestinal Inflammation
(186) According to the methods disclosed herein, a physician of skill in the art can treat a patient, such as a human patient with an inflammatory condition (e.g., intestinal inflammation, such as inflammatory bowel disease (IBD), ulcerative colitis (UC), or Hirschsprung's disease-associated enterocolitis (HAEC)), so as to reduce the inflammation that contributes to the condition. Before treating the patient, a physician can perform an endoscopy or colonoscopy to diagnose a patient with intestinal inflammation, or identify a patient as having intestinal inflammation based on results from an endoscopy or colonoscopy. To treat the patient, a physician of skill in the art can administer to the human patient a serotonin receptor activator that decreases macrophage activation (e.g., an agent that increases serotonin receptor signaling, such as serotonin receptor-specific activating antibodies, e.g., an HTR1F, HTR2B, HTR2C, HTR3A, HTR6, or HTR7-specific activating antibody). The serotonin receptor-specific activating antibody can be administered parenterally (e.g., by subcutaneous injection or intravenous infusion) to treat intestinal inflammation. The serotonin receptor-specific activating antibody is administered in a therapeutically effective amount, such as from 10 μg/kg to 500 mg/kg (e.g., 10 μg/kg, 100 μg/kg, 500 μg/kg, 1 mg/kg, 10 mg/kg, 50 mg/kg, 100 mg/kg, 250 mg/kg, or 500 mg/kg). In some embodiments, the serotonin receptor-specific activating antibody is administered bimonthly, once a month, once every two weeks, or at least once a week or more (e.g., 1, 2, 3, 4, 5, 6, or 7 times a week or more).
(187) The serotonin receptor-specific activating antibody decreases macrophage production of one or more pro-inflammatory cytokines (e.g., IL-8). The serotonin receptor-specific activating antibody is administered to the patient in an amount sufficient to decrease pro-inflammatory cytokine levels by 10% or more (e.g., 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95% or more), or improve symptoms of intestinal inflammation (e.g., abdominal pain, diarrhea, fever, and fatigue). Cytokine production can be assessed by collecting a blood sample from the patient and evaluating one or more pro-inflammatory cytokines (e.g., IL-8). The blood sample can be collected one day or more after administration of the serotonin receptor-specific activating antibody (e.g., 1, 2, 3, 4, 5, 6, 7, 10, 14, 21, or 30 or more days after administration). The blood sample can be compared to a blood sample collected from the patient prior to administration of the serotonin receptor-specific activating antibody (e.g., a blood sample collected earlier the same day, 1 day, 1 week, 2 weeks, one month or more before administration of the serotonin receptor-specific activating antibody). A restoration in intestinal health as evaluated using a colonoscopy, endoscopy or tissue biopsy, reduction in the symptoms of intestinal inflammation (e.g., abdominal pain, diarrhea, fever, and fatigue), a reduction in the markers of intestinal inflammation in a blood sample (e.g., CRP, ESR, calprotectin, or lactoferrin, as compared to levels in a blood sample before treatment), reduced pro-inflammatory cytokine levels, or increased IL-10, TGFβ, Arg1, IDO, PF4, CCL24, or IL4R alpha indicate that the serotonin receptor-specific activating antibody reduces inflammation, decreases macrophage activation, or treats intestinal inflammation.
Example 5—Identification of Serotonin Receptors in T Cells
(188) Naïve CD4+ and CD8+ T cells were isolated from human PBMCs using negative magnetic bead selection (Stemcell Technologies). Cells were activated with human CD3/CD28 T cell activator (StemCell). Cells were lysed and RNA was extracted (Qiagen).
(189) RNA was sequenced at the Broad Technology Labs (BTL) at the Broad Institute using their Smart-Seq2 protocol, a protocol for full-length transcript sequencing from single cells. Smart-Seq2 libraries were sequenced on a high output sequence machine (Illumina) using a high out-put flow cell and reagent kit to generate 2×25 bp reads (plus dual index reads). Further details are available through the BTL, but in brief, reads were demultiplexed and aligned utilizing an ultrafast RNAseq alignment algorithm (Dobin et al., Bioinformatics. 29:15, 2013) with the following parameters: —twopassMode Basic,
(190) —alignlntronMax 1000000, —alignMatesGapMax 1000000, —sjdbScore 2, —quantMode TranscriptomeSAM, and —sjdbOverhang 24.
(191) Quantification of individual read counts was performed using the DESeq2 algorithm (Love et al., Genome Biology 15:550, 2014), a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates. This enabled a more quantitative analysis focused on the strength rather than the mere presence of differential expression. The output of the DESeq2 algorithm was an expression level, in arbitrary units, normalized to an internal factor derived from the sequencing depth of the sample.
(192) Gene expression for select serotonin receptors (HTRs) was detected in different T cell subsets, as shown in Table 18 below.
(193) TABLE-US-00027 TABLE 18 HTR EXPRESSION IN T CELL SUBSETS Expression Level (DESeq2 Cell Type Gene Name normalized) Human aCD3/aCD28 activated HTR1E (Entrez: 3354) 0.3 CD8+ T-Cells Human Naïve CD8+ HTR1F (Entrez: 3355) 0.65 Human Naïve CD4+ HTR1F (Entrez: 3355) 4.9 Human aCD3/aCD28 activated HTR1F (Entrez: 3355) 0.39 CD8+ T-Cells Human Naïve CD8+ HTR2B (Entrez: 3357) 1.2 Human Naïve CD4+ HTR2B (Entrez: 3357) 0.75 Human aCD3/aCD28 activated HTR2B (Entrez: 3357) 0.6 CD8+ T-Cells Human aCD3/aCD28 activated HTR2B (Entrez: 3357) 0.42 CD4+ T-Cells Human Naïve CD8+ HTR3A (Entrez: 3359) 0.97 Human Naïve CD8+ HTR6 (Entrez: 3362) 1.07 Human Naïve CD4+ HTR6 (Entrez: 3362) 3.98 Human aCD3/aCD28 activated HTR6 (Entrez: 3362) 0.19 CD8+ T-Cells Human aCD3/aCD28 activated HTR6 (Entrez: 3362) 0.74 CD4+ T-Cells Human Naïve CD8+ HTR7 (Entrez: 3363) 0.93 Human Naïve CD4+ HTR7 (Entrez: 3363) 0.56
Example 6—Evaluation of Serotonin Secretion by T Cells
(194) CD8+ T cells were isolated from human PBMCs using negative magnetic bead selection (Stemcell Technologies) and cultured in T-Cell Expansion Media (StemCell). T cells were activated with Dynabeads Human T-Activator CD3/CD28 (Invitrogen) and 30 ng/mL recombinant human IL-2 (Peprotech) or left unactivated.
(195) CD8+ T cells in culture were found to produce serotonin, as detected by ELISA (Novus Biologicals). When CD8+ T cells were activated, serotonin levels dropped. Because there was no other cellular source of serotonin in the culture, it seems that CD8+ T cells actively produced and released serotonin.
(196) Serotonin levels in the cultures of human CD8+ T cells that were activated or left unactivated are shown in Table 19 below.
(197) TABLE-US-00028 TABLE 19 SEROTONIN LEVELS IN MEDIA OF CD8+ T CELLS Culture conditions Average serotonin level (nM) Media Only <0.01 Unactivated CD8+ T-Cells: Donor 1 0.0497 Activated CD8+ T-Cells: Donor 1 <0.01 Unactivated CD8+ T-Cells: Donor 2 5.14 Activated CD8+ T-Cells: Donor 2 3.24
OTHER EMBODIMENTS
(198) While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the invention that come within known or customary practice within the art to which the invention pertains and may be applied to the essential features hereinbefore set forth, and follows in the scope of the claims. Other embodiments are within the claims.