Pesticidal fusion protein improvements
11198711 · 2021-12-14
Assignee
Inventors
- Elaine Charlotte Fitches (Middlesbrough, GB)
- John Arthur Gatehouse (Stanley, GB)
- Prashant Shivasharan Pyati (Durham, GB)
- Sheng Yang (Durham, GB)
Cpc classification
C07K2319/35
CHEMISTRY; METALLURGY
C07K14/42
CHEMISTRY; METALLURGY
Y02A40/146
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
Abstract
Methods of increasing the biological activity of toxins. Methods of increasing the biological activity of pesticide toxins through the incorporation of pro-regions into nucleic acid constructs for the production of said toxins.
Claims
1. A method for increasing the pesticidal activity of a recombinant toxin, the method comprising: expressing a nucleic acid construct in vitro encoding a recombinant toxin fusion protein comprising the recombinant toxin linked to a carrier protein and a pro-region of a native toxin, the nucleic acid construct comprising: (i) a nucleic acid sequence encoding the recombinant toxin; (ii) a nucleic acid sequence encoding the pro-region of a native toxin; and (iii) a nucleic acid sequence encoding the carrier protein selected from snowdrop lectin (GNA), garlic lectin Allium sativum, pea lectin Pisum sativum(P-lec), peanut lectin Arachis hypogaea, or french bean lectin (PHA, phytohaemagglutinin).
2. The method of claim 1, wherein the recombinant toxin is an arthropod toxin.
3. The method of claim 1, wherein the recombinant toxin is ω-ACTX-Hv1a.
4. The method of claim 1, wherein the recombinant toxin is δ-amaurobitoxin-PI1a.
5. The method of claim 1, wherein the pro-region is rich in acidic amino acid residues.
6. The method of claim 1, wherein the pro-region comprises the amino acid sequence EDTRADLQGGEAAEKVFRR (SEQ ID NO: 1).
7. The method of claim 1, wherein the pro-region comprises the amino acid sequence ISYEEGKELFQKER (SEQ ID NO: 2).
8. The method of claim 1, wherein the pro-region alters or improves the folding of the recombinant toxin.
9. The method of claim 1, wherein the carrier protein is snowdrop lectin (GNA).
10. The method of claim 1, wherein the pro-region is a sequence between a signal peptide sequence and a mature protein N-terminus of a native toxin; optionally wherein the pro-region is identifiable by the steps of: comparing a sequence for a protein toxin isolated from its source with a sequence predicted by a gene encoding it; identifying N-terminal sequences not present in the isolated protein toxin sequence; identifying a signal peptide sequence in the N-terminal sequence not present in the isolated protein toxin sequence; and identifying the pro-region sequence between the signal peptide sequence and the isolated protein toxin sequence N-terminus.
11. A recombinant toxin fusion protein produced by the method of claim 1.
12. A pesticide composition comprising the recombinant toxin fusion protein produced by the method of claim 1.
13. The pesticide composition of claim 12, wherein the composition comprises the recombinant toxin fusion protein in an amount of between 0.001% and 99% by weight; between 0.5% and 98% by weight; or between 1.0% and 95% by weight.
14. A process for preparing a pesticide composition comprising an admixture of a pesticidal effective amount of the recombinant toxin fusion protein produced by the method of claim 1, with one or more suitable carriers, diluents, adjuvants, preservatives, dispersants, solvents, or emulsifying agents.
15. A molluscicide bait composition comprising the recombinant toxin fusion protein produced by the method of claim 1.
16. A method for treating a pest infection of a plant comprising applying a quantity of the recombinant toxin fusion protein produced by the method of claim 1 to the plant or its locus of growth.
17. A nucleic acid construct encoding the recombinant toxin fusion protein of claim 1.
18. The nucleic acid construct of claim 17, wherein the toxin gene sequence is adjacent to the pro-region sequence.
19. The nucleic acid construct of claim 17, wherein the nucleic acid construct is an expression construct.
20. The nucleic acid construct of claim 17, further comprising a sequence encoding an affinity tag.
21. A transgenic plant or progeny thereof having increased biological activity resulting from the expression of the recombinant toxin fusion protein encoded by the nucleic acid construct of claim 17.
Description
DETAILED DESCRIPTION
(1) The present invention will now be described with reference to the following non-limiting examples and figures, which show:
(2)
(3) (A) Schematic of gene structure of toxin proteins containing pro-regions. (B) Sequence of spider toxin (SED ID NO: 19), Hv1a. Boxed amino acid sequence corresponds to pro-region.
(4)
(5) (A) SDS-PAGE gel (20% acrylamide) analysis showing purification of recombinant Strep-tagged Hv1a toxin from culture supernatant. Lanes 1 & 2 are GNA standards (0.5 and 0.25 μg, respectively) and lanes 3 & 4 are peak fractions (10 μl) following elution from Streptactin column with 2.5 mM desthiobiotin. (B) Tris-Tricine gel (15% acrylamide) analysis of recombinant pro-Hv1a, lanes 1 & 2 are peak fractions (10 μl) following elution from a nickel affinity column with 0.2 M imidazole. Arrow depicts major protein product predicted to be pro-Hv1a from which the histidine tag has been cleaved. (C) Western blot analysis of sample in (B) using anti-His antibodies.
(6)
(7) SDS-PAGE analysis (17.5% acrylamide gel) of purified recombinant Hv1a containing fusion protein, gel stained for total proteins with Coomassie Blue. Loading as follows: Lane 1: pro-Hv1a/GNA; Lane 2: Hv1a/GNA; Lane 3: MODHv1a/GNA; Lanes 4-6: GNA standards of 1, 2 and 4 μg, respectively; Lanes 7-9: 12.5, 25 and 50 μg lyophilised purified pro-Hv1a/GNA (to enable quantification of fusion protein content).
(8)
(9) Percentage survival of 3rd-5.sup.th instar Mamestra brassicae larvae following the injection of different doses of recombinant pro-Hv1a, pro-Hv1a/GNA or Hv1a/GNA. (A) Percentage survival of 5.sup.th instar larvae following injection of various doses of pro-Hva1. (B) Percentage survival of 3.sup.rd-4.sup.th instar larvae following injection of various doses of pro-Hv1a/GNA (Dose A) or Hv1a/GNA (Dose B). (C) Percentage survival of 5.sup.th instar larvae following injection of various doses of pro-Hv1a/GNA (Dose A) and Hv1a/GNA (Dose B).
(10)
(11) Percentage survival of 3.sup.rd instar Mamestra brassicae larvae following ingestion of a single 2 μl droplet containing 20 μg of purified pro-Hv1a, Hv1a/GNA, pro-Hv1a/GNA or GNA. Control larvae were fed on a droplet containing no added protein (n=10 per treatment).
(12)
(13) Percentage survival of (A) Acyrthosiphon pisum (pea aphids) and (B) Sitobion avenae (cereal aphids) with artificial diets containing 0.05-0.75 mg/ml purified recombinant pro-Hv1a, pro-Hv1a/GNA, Hv1a/GNA or GNA.
(14)
(15) Percentage survival of Deroceras reticulatum (200 mg±40 mg) injected with 100, 50 or 25 μg of Hv1a/GNA or pro-Hv1a/GNA. n=18 for control treatment; n=10 for 100 μg dose; and n=8 for 50 and 25 μg doses.
(16)
(17) (A) PI1a toxin derived from a construct encoding the mature toxin sequence separated on “normal” SDS-PAGE; M indicates marker, loadings of PI1a are 5 and 10 μg. (B) PI1a toxin (5 μg) separated on SDS-PAGE after denaturation by 6 M urea. (C) Recombinant PI1a toxin derived from a construct containing the pro-region designated Ao1b on SDS-PAGE, loadings of Ao1bPro-PI1a are 2.5 μg. (D) Western blotting of purified Ao1bPro-PI1a (25, 50 & 100 ng) using anti-His antibodies.
(18)
(19) (A) SDS-PAGE analysis of PI1a/GNA fusion protein (10 μg) and GNA standard (5 μg). (B) Deglycosylation of PI1a/GNA fusion protein using PNGase F (band indicated by open arrowhead), GNA standard (5 μg). (C) SDS-PAGE analysis of Ao1bPro-PI1a/GNA (1, 2 and 4 μg), GNA standard (5 μg). (D) SDS-PAGE analysis of Hv1aPro-PI1a/GNA (1, 2 and 4 μg), GNA standards (1, 2 and 4 μg).
(20)
(21) (A) Percentage survival of 5.sup.th instar Mamestra brassicae larvae following injection of different doses of purified recombinant PI1a. (B) Percentage survival of 5.sup.th instar Mamestra brassicae larvae following injection of different doses of purified recombinant PI1a (Dose A) or Ao1bPro-PI1a (Dose B).
(22)
(23) Percentage survival of 5.sup.th instar Mamestra brassicae larvae following injection of different doses of purified recombinant PI1a/GNA (A), Ao1b-ProPI1a/GNA (B) or Pro-Hv1a-PI1a/GNA (C). n=20 per treatment.
(24)
(25) Percentage survival of 3.sup.rd instar Mamestra brassicae larvae following ingestion of a single 2 μl droplet containing 20 μg of purified PI1a/GNA (A), Ao1bPro-PI1a/GNA (B) or Hv1aPro-PI1a/GNA (C) fusion proteins. Controls in all cases were sucrose alone (no added protein); 30 μg of either PI1a toxin (mature or modified form) or GNA.
ABBREVIATIONS
(26) BB: Binding buffer
(27) ECL: Enhanced chemiluminescence
(28) HRP: Horseradish peroxidase
(29) PBS: Phosphate buffered saline
(30) SDS-PAGE: Sodium dodecyl sulphate polyacrylamide gel electrophoresis
(31) YPG: Yeast extract peptone glycerol
(32) Materials and Methods
(33) Cloning of Recombinant Hv1a, Pro-Hv1a and Pro-Hv1a/GNA Fusion Protein
(34) A synthetic gene encoding the mature Hv1a amino acid sequence was assembled using a series of overlapping oligonucleotides, with codon usage optimised for expression in yeast (Fitches et al., 2012). To create an expression construct coding for the mature Hv1a peptide the coding sequence was amplified by PCR using primers with PstI and SalI sites and purified from excised gel slices using a QiaQuick Gel Extraction Kit (Qiagen) as described in the manufacturer's protocol. The extracted DNA fragment was digested (PstI and SalI) and ligated into similarly digested yeast expression vector pGAPZαB (Invitrogen) that had been previously modified to contain a 5′ Strep tag in frame with the yeast α-factor pre-pro-sequence. The resulting plasmid was transformed into electrocompetent E. coli cells and selected clones were checked for the correct assembly of the construct by gel electrophoresis and DNA sequencing.
(35) The pro-Hv1a coding sequence was amplified by PCR using primers with Ps1I and XbaI sites (Forward: TACTGCAGCAGAAGATACTAGAGCT (SEQ ID NO: 3) and Reverse: ATTCTAGAATCACATCTCTTAAC (SEQ ID NO: 4). Gel extracted products were digested with Ps1I and XbaI and ligated into similarly digested yeast expression vector pGAPZaB. The resulting recombinant plasmid was transformed into E. coli and selected clones were checked for correct assembly of the construct by gel electrophoresis and DNA sequencing.
(36) To produce the pro-Hv1a/GNA construct, the pro-Hv1a coding sequence was amplified by PCR using primers with PstI and NatI sites (Forward: TACTGCAGCAGAAGATACTAGAGCT (SEQ ID NO: 3)and Reverse: ATGCGGCCGCATCACATCTCTTAAC (SEQ ID NO: 5)) and purified by gel electrophoresis as described above. Following restriction by PstI and NotI, the PCR product was ligated into a previously generated pGAPZaB plasmid containing the mature GNA coding sequence digested with the same enzymes. Selected clones containing the expression vector encoding the pro-Hv1a/GNA fusion protein were verified by DNA sequencing.
(37) The sequences of the Hv1a constructs are shown below:
(38) Native Hv1a:
(39) TABLE-US-00003 (SEQ ID NO: 6) SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD
(40) Recombinant Hv1a (alpha factor signal sequence, Hv1a toxin, Strep tag green highlighted region, no pro-region, no carrier):
(41) TABLE-US-00004 (SEQ ID NO: 7) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAWSHPQFEKGL QSPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD
(42) Recombinant pro-Hv1a (alpha factor signal sequence, Hv1a toxin, pro-region, no carrier, (His).sub.6 tag):
(43) TABLE-US-00005 (SEQ ID NO: 8) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAEDTRADLQG GEAAEKVFRRSPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCDALE QKLISEEDLNSAVDHHHHHH
(44) Recombinant Hv1a/GNA (alpha factor signal sequence, Hv1a toxin, no pro-region, carrier):
(45) TABLE-US-00006 (SEQ ID NO: 9) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFI NTTIASIAAKEEGVSLEKREAEAAASPTCI PSGQ PCPYN ENCCSQSCTFKEN ENGNTVKRCDAAADNIL YSGETLSTGEFLNYG SFVFI MQEDCNLVL YDVDKPIWATNT GGLSRSCFLSMQTDGNLVVYNPSN KPIWASNTGGQNGNYVCILQKDRNVVIYGTDRWATGVD
(46) Recombinant pro-Hv1a/GNA (alpha factor signal sequence, Hv1a toxin, pro-region, carrier, (His).sub.6 tag):
(47) TABLE-US-00007 (SEQ ID NO: 10) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNST 5 NNGLLFINTTIASIAAKEEGVSLEKREAEAAAEDTRADLQG GEAAEKVFRRSPTCIPSGQPC PYN ENCCSQSCTFKEN ENGNTVKRCDAAA DN IL YSG ETLSTGEFLNYGSFVFI MQEDCNLVL YDVDKPIWATNTGGLSR SCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTD RWATGVDHHHHHH
Cloning of Recombinant PI1a and PI1a/GNA Fusion Proteins
(48) A double stranded DNA incorporating a sequence encoding the mature PI1a toxin (P83256), with codon usage optimised for yeast, was designed by the inventors and synthesised and supplied by ShineGene Molecular Biotech, Inc. (Shanghai 201109, China; www.synthesisgene.com) in the vector pUC57. Other oligonucleotides were supplied by Sigma Chemical Co.
(49) The PI1a coding sequence was transferred from pUC57 to the yeast expression vector pGAPZαB (Invitrogen) by digestion with PstI and XbaI, isolation of the coding sequence fragment by agarose gel electrophoresis, followed by ligation to pGAPZαB that had been digested with the same enzymes. DNA fragments were purified from excised gel slices using a QiaQuick Gel Extraction Kit (Qiagen). The resulting recombinant plasmid was cloned using standard protocols by transformation of electrocompetent E. coli cells. Selected clones were checked for correct assembly of the construct by DNA sequencing. To produce the modified construct for expression of PI1a two complementary synthetic oligonucleotides encoding the pro-region from U3-agatoxin-Ao1b (Q5Y4V7) were assembled and inserted into the PstI site of the PI1a expression construct. Correct assembly of the construct (ProAo1b-PI1a) was checked by DNA sequencing.
(50) To produce a construct encoding the PI1a/GNA fusion protein, the mature PI1a coding sequence from a verified expression construct in pGAPZαB was excised by digestion with PstI and NotI and purified by agarose gel electrophoresis. A pGAPZαB plasmid containing the fusion protein construct Hv1a/GNA (Fitches et al., 2012) was digested with PstI and NotI to remove the Hv1a coding sequence and purified by agarose gel electrophoresis. The Hv1a coding region was subsequently replaced with PI1a by ligating the purified fragments and cloning the resulting recombinant plasmid. To produce the modified expression construct for PI1a/GNA containing the pro-region from U3-agatoxin-Ao1b, the PI1a/GNA expression construct was modified as described above; in addition, a pro-region from the pro-Hv1a toxin was also used in a further construct designated as Pro-Hv1a-PI1a. Selected clones containing the expression vector encoding the PI1a/GNA fusion proteins were verified by DNA sequencing. All DNA sequencing was carried out using Applied Biosystems ABI Prism 3730 automated DNA sequencers by DBS Genomics, School of Biological and Biomedical Sciences, Durham University, UK.
(51) Native PI1a:
(52) TABLE-US-00008 (SEQ ID NO: 11) GCLGEGEKCADWSGPSCCDGFYCSCRSMPYCRCRNNS
(53) Recombinant PI1a (alpha factor signal sequence, PI1a toxin, no pro-region, no carrier, (His).sub.6 tag):
(54) TABLE-US-00009 (SEQ ID NO: 12) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAGCLGEGEKC ADWSGPSCCDGFYCSCRSMPYCRCRNNSALEQKLISEEDLNSAVDHHHHH H
(55) Recombinant Ao1bPro-PI1a (alpha factor signal sequence, pro-region [Ao1b], PI1a toxin, no carrier, +(His).sub.6 tag):
(56) TABLE-US-00010 (SEQ ID NO: 13) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAISYEEGKEL FQKERGCLGEGEKCADWSGPSCCDGYCSCRSMPYCRCRNNSALEQKLISE EDLNSAVDHHHHHH
(57) Recombinant PI1a/GNA (alpha factor signal sequence, PI1a toxin, no pro-region, carrier, (His).sub.6 tag):
(58) TABLE-US-00011 (SEQ ID NO: 14) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAGCLGEGEKC ADWSGPSCCDGFYCSCRSMPYCRCRNNSAAADNIL YSGETLSTGEFLNYG SFVFIMQEDCNLVL YDVDKPIWATN TGGLSRSCFLSMQTDGNLVVYNPSN KPIWASNTGGQNGNYVCI LQKDRNVVIYGTDRWATGVDHHHHHH
(59) Recombinant Ao1bPro-PI1a/GNA (alpha factor signal sequence, pro-region [Ao1b], PI1a toxin, carrier, (His).sub.6 tag):
(60) TABLE-US-00012 (SEQ ID NO: 15) MRFPSI FTAVLFAASSALAAPVNTTTEDETAQI PAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAISYEEGKEL FQKERGCLGEGEKCADWSGPSCCDGCSCRSMPYCRCRNNSAAADNILYSG ETLSTGEFLNYGSFVFIMQEDCNLVL YDVDKPIWATNTGGLSRSCFLSMQ TDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDRWATGVD HHHHHH
(61) Recombinant Hv1aPro-PI1a/GNA (alpha factor signal sequence, pro-region [Hv1a], PI1a toxin, carrier, (His).sub.6 tag):
(62) TABLE-US-00013 (SEQ ID NO: 16) MRFPSIFTAVLFAASSALAAPVNTTTEDETAQIPAEAVIGYSDLEGDFDV AVLPFSNSTNNGLLFINTTIASIAAKEEGVSLEKREAEAAAEDTRADLQG GEAAEKVFRRGCLGEGEKCADWSGPCCDGFYCSCRSMPYCRCRNNSAAAD NIL YSGETLSTGEFLNYGSFVFIMQEDCNL VL YDVDKPIWATNTGGLSRS CFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVIYGTDR WATGVDHHHHHH
Expression of Hv1a, Pro-Hv1a, Hv1a/GNA and Pro-Hv1a/GNA Fusion Proteins in Yeast
(63) pGAPZαB plasmids containing Hv1a, pro-Hv1a, Hv1a/GNA and pro-Hv1a/GNA sequences were amplified in E. coli, purified and linearised with BlnI (Takara). Linearised plasmids were transformed into Pichia pastoris strain SMD1168H (Invitrogen) using the EasyComp Transformation kit (Invitrogen) as described in the manufacturer's protocol. Transformed yeast clones were selected on YPG agar plates (1% yeast extract (w/v), 2% peptone (w/v), 4% glycerol (v/v), 1.5% agar (w/v)) containing zeocin (100 mg/ml). Selected clones were checked for expression by analysis of culture supernatants from small-scale shake flask cultures (10 ml) grown for 2-3 days in YPG-zeocin media at 30° C. Supernatant samples were separated by SDS-polyacrylamide gel electrophoresis; gels were blotted onto nitrocellulose and probed with anti-(His).sub.6 primary antibodies (BioRad) or anti-Strep antibodies, or for Hv1a/GNA and pro-Hv1a/GNA blots were probed with anti-GNA primary antibodies, followed by washing, probing with HRP-conjugated secondary antibodies (BioRad), and detection of bound antibodies by ECL, as described previously (Fitches et al., 2001; 2012).
(64) For protein production selected P. pastoris clones containing the integrated Hv1a, pro-Hv1a, Hv1a/GNA and pro-Hv1a/GNA expression cassettes were grown in either a 7.5 L BioFlo 110 bench-top fermenter (New Brunswick Scientific) or a 5 L Bio-Controlly ADI1010 bench-top fermenter (APPLIKON BIOTECHNOLOGY, Holland). YPG cultures (200 ml) of transformed P. pastoris were grown for 2-3 days at 30° C. with shaking (no zeocin antibiotics) before inoculating 2.5 L of sterile minimal media supplemented with PTM1 salts. Cultivation at 30° C., 30% dissolved oxygen, pH 4.5-5.0 with continuous agitation was carried out with a ramped glycerol feed (5-10 ml/h; total 1.25 l) over a period of 4 days. Culture supernatant was subsequently separated from cells by centrifugation (20 min, 8000 rpm; 4° C.), clarified by filtration through 2.7 μM and 0.7 μM glass fibre filters (GFD and GFF; Whatmann). For Hv1a only supernatant was adjusted to 50 mM phosphate buffer containing 0.3 M sodium chloride at pH 8.0 by adding 4× concentrated stock. Recombinant Hv1a was purified on streptactin columns (1 ml) with a flow rate of 0.5 ml/min. Columns were equilibrated in 50 mM phosphate buffer containing 0.3 M sodium chloride at pH 8.0. Strep-tagged Hv1a was eluted from columns using 2.5 mM desthiobiotin (in phosphate buffer; pH 8.0). For all other proteins supernatants were adjusted to 0.02 M sodium phosphate buffer, 0.4 M sodium chloride, pH 7.4 by adding 4× concentrated stock (4× Binding buffer [BB]). Recombinant pro-Hv1a Hv1a/GNA and pro-Hv1a/GNA were purified by nickel affinity chromatography on 5 ml HisTrap crude nickel columns (GE Healthcare) with a flow rate of 2 ml/min. After loading, the columns were washed with 1×BB (50 mM sodium phosphate; 0.4 M sodium chloride) and then with BB containing 0.025 M imidazole, and finally bound recombinant proteins were eluted with BB containing 0.2 M imidazole. In all cases eluted proteins were then checked for purity by SDS-PAGE, dialysed against deionised water using multiple changes to remove all small molecules, and freeze-dried. Concentrations of recombinant proteins were estimated by comparison to known amounts of GNA standards run on SDS-PAGE gels or by BCA analysis using a BCA™ Protein Assay Kit (Thermo Scientific).
(65) Expression of PI1a and PI1a/GNA Fusion Proteins in Yeast
(66) pGAPZαB plasmids containing the PI1a and PI1a/GNA expression constructs were amplified in E. coli, purified and linearised with BlnI. Linearised plasmids were transformed into Pichia pastoris strain SMD1168H (Invitrogen) using the EasyComp Transformation kit (Invitrogen) as described in the manufacturer's protocol. Transformed yeast clones were plated and selected on YPG agar plates (1% yeast extract (w/v), 2% peptone (w/v), 4% glycerol (v/v), 1.5% agar (w/v)) containing zeocin (100 mg/ml). Selected clones (at least 10 for each construct) were checked for expression of recombinant proteins by analysis of culture supernatant from small-scale shake flask cultures grown for 2-3 days in YPG-zeocin media at 30° C. Samples of supernatant were separated by SDS-polyacrylamide gel electrophoresis; gels were blotted onto nitrocellulose and probed with anti-(His).sub.6 primary antibodies (BioRad) or anti-GNA primary antibodies, followed by washing, probing with HRP-conjugated secondary antibodies (BioRad), and detection of bound antibodies by ECL.
(67) Selected clones of P. pastoris containing the integrated PI1a and PI1a/GNA constructs were grown in a 5 L Bio-Controlly ADI1010 bench-top fermenter (Applikon Biotechnology, Holland). For fermentation, two 100 ml YPG cultures of P. pastoris containing toxin or fusion genes were grown for 2-3 days at 30° C. with shaking, prior to being used to inoculate 2.5 L of sterile minimal media supplemented with PTM1 salts. Cultivation at 30° C., 30% dissolved oxygen, pH 4.5-5.0 with continuous agitation was continued with a ramped glycerol feed (5-10 ml/h) over a period of 4 days. Culture supernatant was separated from cells by centrifugation (20 min at 5000 g), and adjusted to 0.02 M sodium phosphate buffer, 0.4 M sodium chloride, pH 7.4 by adding 5× concentrated stock. Recombinant proteins were purified by nickel affinity chromatography on 5 ml HisTrap crude nickel columns (GE Healthcare) with a flow rate of 2 ml/min. After loading, the columns were washed with 0.02 M sodium phosphate buffer, 0.4 M sodium chloride pH 7.4 and the bound proteins were eluted with 0.2 M imidazole in the same buffer. Eluted proteins were checked for purity by SDS-PAGE, dialysed against deionised water using multiple changes to remove all small molecules, and freeze-dried. Concentrations of recombinant proteins were estimated by comparison to known amounts of GNA standards run on SDS-PAGE gels or by BCA analysis using a BCA™ Protein Assay Kit (Thermo Scientific).
(68) Insect Bioassays
(69) 3.sup.rd-5.sup.th instar Mamestra brassicae larvae (approximately 30-55 mg in weight) were used for injection bioassays. Larvae were injected with varying doses of Hv1a, pro-Hv1a, pro-Hv1a/GNA, PI1a, Ao1bProPI1a, PI1a/GNA, Ao1bPro-PI1a/GNA, or Hv1aPro-PI1a/GNA (n=20 per dose) in 5 μl of PBS (phosphate buffered saline; 0.15 M NaCl, 0.015 M sodium-phosphate buffer, pH 7.2). Larvae for controls were injected with 5 μl 1×PBS. Paralysis and mortality was recorded 12-96 h after injection.
(70) Droplet-feeding assays were carried out to assess the oral activity of Hv1a/GNA, pro-Hv1a/GNA, PI1a, Ao1bProPI1a, PI1a/GNA, Ao1bPro-PI1a/GNA, or Hv1aPro-PI1a/GNA towards third to fifth instar larvae of M. brassicae. Larvae were starved for approximately 24 h before feeding in order to encourage droplet consumption. Larvae were fed with a 2 μl droplet containing 20 μg of the above fusion proteins, 30 μg of toxins or 30 μg of GNA, in 1×PBS solution containing 10% sucrose (w/w). Control larvae were fed on PBS/sucrose droplets containing no added protein. Treated larvae were placed on standard artificial diet after consumption of the droplet.
(71) The insecticidal effects of Hv1a/GNA and pro-Hv1a/GNA to Acyrthosiphon pisum (pea aphids) and Sitobion avenae (cereal aphids) was assayed by feeding 100 μl liquid artificial diet containing known concentrations of fusion proteins (Prosser and Douglas, 1992), using double parafilm sachets (diet droplet in the middle) to deliver diet to insects. The experiment used 1-2 day-old aphids and survival was assessed daily for six days.
(72) Injection Bioassays: Deroceras reticulatum (Mollusc Grey Field Slug)
(73) Hv1a/GNA and pro-Hv1a/GNA were tested for activity against adult slugs (Deroceras reticulatum) by injection into adult slugs (0.2-0.3 g). Slugs were chilled at 4° C. (for approximately 15 minutes) prior to injection of 25 μg, 50 μg or 100 μg of purified fusion proteins resuspended in 20 μl PBS. Mortality was assessed daily for 7 days.
(74) Statistical Analysis
(75) Survival data were analysed using Kaplan-Meier survival analysis, using Prism (v5) software. All other data analysis was carried out using Origin 8.5 graphing and data analysis software. ANOVA analysis (with Bonferroni-Dunn post-hoc tests) was carried out to determine any significant differences between treatments in the parameters measured.
(76) Results
(77) The present inventors have conducted experiments to investigate the effect of inclusion of a pro-region in an expression construct for a toxin on the biological activity of said toxin.
(78) Experiments Investigating the Toxicity of Hv1a
(79) Introduction
(80) To investigate the effect of inclusion of a pro-region on the toxicity of recombinant toxins, ω-Hexatoxin-Hv1a was used. ω-Hexatoxin-Hv1a is a toxin isolated from the funnel-web spider Hadroncyhe versuta. ω-Hexatoxin-Hv1a (or ω-ACTX-Hv1a) is a calcium channel antagonist and it has previously been shown that ω-ACTX-Hv1a can block invertebrate but not vertebrate calcium channels.
(81) Although it has been shown that ω-ACTX-Hv1a can be used on its own as a pesticide when applied topically to caterpillars (Khan et al., 2006), no further evidence for insecticidal activity of the peptide alone has been reported. In patent application PCT/GB2012/000287 the present inventors demonstrated that the toxicity of a recombinant toxin (ω-ACTX-Hv1a) expressed in Pichia pastoris could be enhanced by expressing the protein in fusion with the plant lectin GNA, which had previously been shown to cross the gut epithelium and deliver ‘passenger’ peptides from the gut to the circulatory system of invertebrate animals.
(82) To further investigate how the potency of toxins expressed in vitro might be improved, the present inventors analysed the DNA sequences of the genes encoding arthropod toxins. The arthropod toxins utilised in PCT/GB2012/000287 are small, cysteine-rich proteins belonging to several superfamilies of protein sequences (which include toxins from organisms other than arthropods). The encoding genes include two sequences that are not present in the final protein product; a predicted N-terminal signal peptide that is removed during translation and a predicted pro-region, between the signal peptide and the final sequence of the protein as isolated (see
(83) The present inventors investigated the effect of including the pro-region in the expression construct on the overall toxicity of the recombinant protein.
(84) In the first instance, ω-ACTX-Hv1a was used, as this toxin contains a predicted pro-region in its gene sequence (see
(85) Synthetic Gene Constructs, Expression and Purification of Recombinant Hv1a, Pro-Hv1a, Hv1a/GNA and Pro-Hv1a/GNA
(86) Recombinant Hv1a, pro-Hv1a, Hv1a/GNA and pro-Hv1a/GNA fusion protein constructs were synthesised based on the vector pGAPZαB, which possesses a strong constitutive promoter (GAPDH) to direct target gene expression. The pGAPZ vectors are integrating vectors in the expression host Pichia pastoris and selected transformants contain the expression construct integrated into the host genome. The constructs for expressing recombinant Hv1a and pro-Hv1a contained a predicted amino acid sequence corresponding to the published sequence for the toxin. For Hv1a, the mature peptide was cloned in frame with the yeast a-factor prepro-sequence and 8 amino acids encoding a Strep tag (i.e. WSHPQFEK (SEQ ID NO: 17) linked to the N-terminus of mature Hv1a sequence via a 3 amino acid linker ‘GLQ’). For Pro-Hv1a, the N-terminal pro-region was arranged in-frame C-terminal to a sequence encoding the yeast a-factor prepro-sequence, and the construct also contained sequences encoding the myc epitope and (His).sub.6 tag, supplied by the vector, at the C-terminus of the predicted product. For Hv1a/GNA, the mature toxin sequence was fused to the N-terminus of a coding sequence corresponding to residues 1-105 of mature snowdrop lectin (GNA) via a 3 amino acid (AAA) linker peptide. For pro-Hv1a/GNA the synthetic pro-Hv1a coding sequence was fused to the N-terminus of a coding sequence corresponding to residues 1-105 of mature snowdrop lectin (GNA) via a 3 amino acid (AAA) linker peptide. Both fusion protein constructs were also arranged in-frame with the yeast α-factor prepro-sequence, and C-terminal to a sequence encoding (His).sub.6 tag, supplied by the vector. The constructs were assembled by ligation of endonuclease digested DNA and were checked by DNA sequencing after cloning.
(87) Sequence verified clones, containing recombinant Hv1a, pro-Hv1a, Hv1a/GNA or pro-Hv1a/GNA were transformed into the P. pastoris protease-deficient strain SMD1168H and selected using the antibiotic zeocin. Selected clones were grown in shake flask cultures for 3-4 days at 30° C. and culture supernatants were analysed for the expression of recombinant proteins using western blotting. This enabled highly-expressing clones to be selected for production by bench-top fermentation. The majority of the analysed transformed yeast clones showed evidence of protein expression as judged by the presence of immunoreactive bands with the expected size on western blots (results not shown).
(88) Fermentation of the selected clones was carried out in bioreactors under controlled environmental conditions. The use of the pGAP alpha factor secretory signal that directs the secretion of expressed proteins out of the cells and into the growth media, enabled subsequent purification of recombinant proteins from fermented culture supernatants. Supernatants were obtained by centrifugation, clarified by filtration and recombinant proteins were subsequently purified by affinity chromatography (Streptactin for Hv1a and nickel affinity for pro-Hv1a and pro-Hv1a/GNA). Eluted peaks containing target proteins were desalted by dialysis and lyophilised. For yields of recombinant proteins, Hv1a was produced at approximately 5-10 mg/L culture supernatant; pro-Hv1a was produced at approximately 40 mg/L, as estimated by BCA quantification and Hv1a/GNA at approximately 40 mg/L and pro-Hv1a/GNA at approximately 21 mg/L, as estimated by semi-quantitative SDS-PAGE.
(89) As shown in
(90) Lyophilised samples of purified pro-Hv1a/GNA, Hv1a/GNA and MODHv1a/GNA were analysed on SDS-PAGE gels (
(91) Injection Toxicity of Recombinant Hv1a, Pro-Hv1a, Hv1a/GNA and Pro-Hv1a/GNA Fusion Protein to Cabbage Moth (Mamestra brassicae) Larvae
(92) Injections of Hv1a at doses of up to 100 μg of the recombinant toxin did not result in any larval mortality with survival comparable to controls (n=40; survival >90%). This demonstrated that the expression of mature Hv1a peptide without an N-terminal pro-region resulted in the production of biologically inactive toxin, suggesting that the toxin was incorrectly processed and/or folded during synthesis by yeast cells. By contrast, injections of newly eclosed 3.sup.rd-4.sup.th (˜30-40 mg) and 5.sup.th instar (˜45-55 mg) M. brassicae larvae with either pro-Hv1a, Hv1a/GNA, MODHv1a/GNA or pro-Hv1a/GNA led to significant larval mortality.
(93) As shown in
(94) As shown in
(95) TABLE-US-00014 TABLE 1 Toxicity of recombinant toxins and fusion proteins in injection bioassays with Mamestra brassicae larvae Hv1a Pro- Hv1a (E. (literature) Hv1a Pro-Hv1a Hv1a/GNA Hv1a/GNA coli) LD.sub.50 12 μg/g >1000 25 μg/g 55 μg/g 4.6 μg/g 69 μg/g (Heliothis μg/g (48 h) (72 h) (48 h) (72 h) sp.)* <25 μg/g (72 h) *Data not available for M. brassicae
Ingestion Toxicity of Recombinant Hv1a, Pro-Hv1a and Pro-Hv1a/GNA Fusion Protein to Cabbage Moth (M. brassicae) Larvae
(96) The oral activity of proHv1a/GNA and Hv1a/GNA was assessed by feeding 2 μl droplets containing 20 μg of fusion protein to newly eclosed third instar M. brassicae larvae. Control treatments were 20 μg of either GNA or pro-Hv1a, in addition to a no-added protein control group. As shown in
(97) TABLE-US-00015 TABLE 2 Toxicity of recombinant toxins and fusion proteins in oral feeding assays with Mamestra brassicae larvae Pro- Hv1a Pro-Hv1a Hv1a/GNA Hv1a/GNA (E. coli) Percentage 85% (5 d) 70% (5 d) 10% (5 d) 100% (5 d) Survival 600 μg/g 500 μg/g 500 μg/g 180 μg/g
Ingestion Toxicity of Recombinant Hv1a, Pro-Hv1a and Pro-Hv1a/GNA Fusion Protein to Pea (A. pisum) and Cereal (Sitobion avenae) Aphids
(98) Recombinant pro-Hv1a protein, pro-Hv1a/GNA and Hv1a/GNA were tested for oral activity against pea and cereal aphids by incorporation into artificial diet at concentrations of 0.125 mg-0.75 mg/ml (125-750 ppm). As observed for lepidopteran larvae, purified pro-Hv1a/GNA was found to be significantly more toxic than Hv1a/GNA to both aphid species (
(99) Pro-Hv1a/GNA was also found to be significantly more toxic than Hv1a/GNA to cereal aphids. As shown in
(100) Injection Toxicity of Recombinant MODHv1a and Pro-Hv1a/GNA Fusion Protein to Grey Field Slugs (Deroceras reticulatum)
(101) MODHv1a/GNA and Pro-Hv1a/GNA were tested for activity against slugs (D. reticulatum) by injection into adult slugs (˜0.2 g). MODHv1a/GNA corresponds to the modified form of Hv1a/GNA, where a single amino acid change at the C-terminus of Hv1a has been shown to improve expression of intact fusion protein but has equivalent toxicity to Hv1a/GNA. Slugs were chilled at 4° C. (for ˜15 minutes) prior to injection of 25, 50 or 100 μg of purified Hv1a/GNA resuspended in 20 μl PBS. Mortality was assessed daily for 7 days.
(102) Experiments Investigating the Toxicity of PI1a
(103) Introduction
(104) Results obtained for the Hva1/GNA fusion protein were extended by taking a toxin protein whose gene sequence did not include a predicted pro-region and incorporating a pro-region into the expression construct based on similar sequences in the global protein database. The toxin δ-amaurobitoxin-PI1a from the spider Pireneitega luctuosa was utilised.
(105) Expression and Purification of Recombinant PI1a and PI1a/GNA
(106) Expression constructs for the production of recombinant proteins in Pichia pastoris were based on the vector pGAPZαB, which contains a strong constitutive promoter used to direct expression of the recombinant protein and which is designed to integrate into the host genome at the GAPDH locus, giving stable transformants. Expression constructs for the production of recombinant PI1a contained a synthetic coding sequence corresponding to the published amino acid sequence for the toxin designated PI1a, arranged in-frame C-terminal to a sequence encoding the yeast α-factor prepro-sequence. Constructs containing toxin pro-regions had these inserted between the yeast α-factor prepro-sequence and the PI1a toxin sequence. The pro-regions used were taken from the closely related toxin U3-agatoxin-Ao1b from the spider Agelena orientalis (a cDNA sequence including the pro-region is not available for PI1a), designated Ao1bPro-PI1a, and from the pro-region for the Hv1a atracotoxin, as previously described, designated Hv1aPro-PI1a. The expression constructs also contained C-terminal sequences encoding the myc epitope and (His).sub.6 tag, supplied by the vector.
(107) Three expression constructs were created for the production of recombinant PI1a/GNA fusion protein and all contained the mature PI1a coding sequence fused to the N-terminus of a coding sequence corresponding to residues 1-105 of mature snowdrop lectin (GNA) via a 3 amino acid linker peptide; again, the fusion proteins were arranged in-frame C-terminal to the α-factor prepro-sequence, and N-terminal to a sequence encoding the (His).sub.6 tag, supplied by the vector. Modified fusion protein constructs also contained the pro-regions of Ao1b and Hv1a as described above, inserted between the yeast α-factor prepro-sequence and the mature coding sequence of PI1a; they were designated Ao1bPro-PI1a/GNA and Hv1aPro-PI1a/GNA. The constructs were assembled by restriction-ligation and were checked by DNA sequencing after cloning.
(108) Verified clones of expression constructs were transformed into the protease-deficient P. pastoris strain SMD1168H, using antibiotic (zeocin) selection for transformants. Approximately 50 resistant colonies were obtained for each expression construct. Culture supernatant from selected clones grown in shake-flask cultures was analysed for production of recombinant proteins by western blotting, to allow selection of clones producing the highest levels of PI1a and PI1a/GNA fusion proteins. Screening of large numbers of transformed yeast clones was not necessary, since most clones were expressing recombinant proteins, as judged by the presence of immunoreactive bands of the expected size on western blots of culture supernatants (results not shown).
(109) For each construct, the best-expressing clone of those screened in small-scale cultures was selected for large-scale protein production by bench top fermentation. Culture supernatants were purified by nickel affinity chromatography and eluted peaks were desalted by dialysis and lyophilized. Yields of recombinant proteins were comparable to other fusion proteins prior to optimisation; PI1a was produced at approximately 26 mg/L, Ao1bPro-PI1a at approximately 32 mg/L, PI1a/GNA at approximately 21 mg/L, Ao1bPro-PI1a/GNA at approximately 32 mg/L and Hv1aPro-PI1a at approximately 13 mg/L as estimated by semi-quantitative analysis.
(110) Purified recombinant PI1a toxins were analysed by SDS-PAGE and western blotting (
(111) The “normal” PI1a/GNA fusion protein (i.e. derived from a construct that did not contain an additional pro-region) separated on SDS-PAGE gels as two major proteins of indicated sizes of 18 and 21 kDa (
(112) Both of the PI1a/GNA fusion proteins derived from constructs containing additional pro-region sequences (i.e. Ao1bPro-PI1a/GNA and Hv1aPro-PI1a/GNA) separated on SDS-PAGE gels as two major staining bands of approximately 17 and 21 kDa (
(113) Injection Toxicity of Recombinant PI1a and Ao1bPro-PI1a Protein to Cabbage Moth (M. brassicae) Larvae
(114) Newly eclosed 5.sup.th instar larvae (˜45-55 mg in weight) of M. brassicae were injected with purified recombinant proteins to assess and compare in vivo activity of the toxins and fusion proteins.
(115) Recombinant PI1a produced from the modified expression construct, including the pro-region from U3-agatoxin-Ao1b, showed similar toxic effects to PI1a, but was consistently more effective at lower doses than PI1a produced from the construct without this additional sequence (
(116) TABLE-US-00016 TABLE 3 Toxicity of recombinant toxins and fusion proteins in injection bioassays with Mamestra brassicae larvae Hv1aPro- Pl1a Ao1bPro- Pl1a/ Ao1bPro- Pl1a/ (literature) Pl1a Pl1a GNA Pl1a/GNA GNA LD.sub.50 9.5 μg/g 82 21 μg/g 11 μg/g 7.6 μg/g <5 μg/g (Spodoptera μg/g (28 μg/g (19 μg/g (<12 μg/g sp.)* fusion) fusion ) fusion) *data not available for M. brassicae
(117) The PI1a/GNA fusion protein also caused paralysis and mortality when injected into M. brassicae larvae and was significantly more effective than toxin alone (
(118) As observed with PI1a toxin, addition of the Ao1b pro-region to the PI1a/GNA fusion protein expression construct resulted in a protein product with enhanced biological activity (
(119) Ingestion Toxicity of Recombinant PI1a/GNA, Ao1bPro-PI1a/GNA and Pro-HvlaPI1a/GNA Proteins to Cabbage Moth (M. brassicae) Larvae
(120) A similar increase in toxicity of fusion proteins derived from expression constructs including pro-regions to that observed in injection assays was also observed in droplet feeding assays with 3rd stadium M. brassicae larvae (
(121) TABLE-US-00017 TABLE 4 Toxicity of recombinant toxins and fusion proteins in oral feeding assays with Mamestra brassicae larvae Pl1a (recom- Ao1bPro- Ao1bPro- Hv1aPro- binant) Hv1a Pl1a/GNA Pl1a/GNA Pl1a/GNA Percentage 90% (5 d) 80% (5 d) 60% (5 d) 50% (5 d) 30% (5 d) Survival 400 μg/g 400 μg/g 500 μg/g 500 μg/g 500 μg/g
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