Methods for Performing a Raman Spectroscopy Measurement on a Sample and Raman Spectroscopy Systems
20210381983 · 2021-12-09
Inventors
Cpc classification
International classification
Abstract
There is described a method for performing a Raman spectroscopy measurement on a sample. The method generally has sequentially illuminating an area of said sample with first and second excitation signals, said first excitation signal being slightly spectrally spaced-apart from said second excitation signal, resulting in said area sequentially emitting first and second emission signals; upon receiving said first emission signal, measuring a first intensity value being indicative of optical intensity of said first emission signal within at least a detection band; upon receiving said second emission signal, measuring a second intensity value being indicative of optical intensity of said second emission signal within said detection band; and performing said Raman spectroscopy measurement by comparing said first intensity value to said second intensity value.
Claims
1. A method for performing a Raman spectroscopy measurement on a sample, said method comprising: sequentially illuminating an area of said sample with first and second excitation signals, said first excitation signal being slightly spectrally spaced-apart from said second excitation signal, resulting in said area sequentially emitting first and second emission signals; upon receiving said first emission signal, measuring a first intensity value being indicative of optical intensity of said first emission signal within at least a detection band; upon receiving said second emission signal, measuring a second intensity value being indicative of optical intensity of said second emission signal within said detection band; and performing said Raman spectroscopy measurement by comparing said first intensity value to said second intensity value.
2. The method of claim 1 wherein said measuring a first intensity value comprises measuring, for a plurality of spectrally spaced-apart detection bands, corresponding ones of a plurality of first intensity values being indicative of optical intensity of said first emission signal within said spectrally spaced-apart detection bands, and wherein said measuring a second intensity value comprises measuring, for said plurality of spectrally spaced-apart detection bands, corresponding ones of a plurality of second intensity values being indicative of optical intensity of said second emission signal within said spectrally spaced-apart detection bands.
3. The method of claim 2 wherein said plurality of spectrally spaced-apart detection bands has between 1 and 2000 spectrally spaced-apart detection bands, preferably between 1 and 200 spectrally spaced-apart detection bands and most preferably between 1 and 20 spectrally spaced-apart detection bands.
4. The method of claim 2 wherein said plurality of spectrally spaced-apart detection bands are evenly spaced-apart from one another.
5. The method of claim 2 wherein at least one of said spectrally spaced-apart detection bands has a spectral width between about 0.1 nm and about 10 nm, preferably between about 0.1 nm and about 5 nm, most preferably between about 0.2 nm and 2 nm.
6. The method of claim 1 wherein said first and second excitation signals are spectrally spaced-apart by a spectral spacing of between 0.1 nm to 5 nm and most preferably between 0.3 nm and 2 nm.
7. The method of claim 1 wherein said first excitation signal has optical power at 785 nm, and said second excitation signal has optical power at 783 nm.
8. The method of claim 1 wherein said comparing includes subtracting said first intensity value from said second intensity value.
9. The method of claim 1 further comprising determining whether a region of said area of said sample is unhealthy.
10. The method of claim 9 wherein said determining includes delimiting said unhealthy tissue from said healthy tissue.
11. The method of claim 1 wherein said sequentially illuminating comprises sequentially illuminating an area of said sample with first, second and third excitation signals, said first, second and third excitation signals being slightly spectrally spaced-apart from one another, resulting in said area sequentially emitting first, second and third emission signals, the method further comprising measuring a third intensity value indicative of optical intensity of said third emission signal within said detection band, said comparing said first intensity value to said second intensity value comprising estimating a fourth intensity value at said detection band based on said first and second intensity values, said performing comprising comparing said fourth intensity value to said third intensity value.
12. A Raman spectroscopy system comprising: an illumination assembly sequentially illuminating an area of a sample with first and second excitation signals, said first excitation signal being slightly spectrally spaced-apart from said second excitation signal, resulting in said area sequentially emitting first and second emission signals; a receiver assembly receiving said first and second emission signals, the receiving assembly having at least a detector measuring a first intensity value being indicative of optical intensity of said first emission signal within at least a detection band and measuring a second intensity value being indicative of optical intensity of said second emission signal within said detection band; and a controller being communicatively coupled to said receiver assembly, said controller having a processor and a memory having stored thereon instructions that when executed by said processor performs said step of comparing said first intensity value to said second intensity value.
13. The Raman spectroscopy system of claim 12 wherein said receiver assembly has a plurality of detectors, said plurality of detectors measuring, for a plurality of spectrally spaced-apart detection bands, corresponding ones of a plurality of first intensity values being indicative of optical intensity of said first emission signal within said spectrally spaced-apart detection bands, and measuring, for said plurality of spectrally spaced-apart detection bands, corresponding ones of a plurality of second intensity values being indicative of optical intensity of said second emission signal within said spectrally spaced-apart detection bands.
14. The Raman spectroscopy system of claim 13 wherein said plurality of spectrally spaced-apart detection bands of said receiver assembly has between 1 and 2000 spectrally spaced-apart detection bands, preferably between 1 and 200 spectrally spaced-apart detection bands and most preferably between 1 and 20 spectrally spaced-apart detection bands.
15. The Raman spectroscopy system of claim 13 wherein at least one of said spectrally spaced-apart detection bands has a spectral width between about 0.1 nm and about 10 nm, preferably between about 0.1 nm and about 5 nm, most preferably between about 0.2 nm and 2 nm.
16. The Raman spectroscopy system of claim 12 wherein said first and second excitation signals are spectrally spaced-apart by a spectral spacing of between 0.1 nm to 5 nm and most preferably between 0.3 nm and 2 nm.
17. The Raman spectroscopy system of claim 12 wherein said illumination assembly has a first excitation signal source configured for emitting said first excitation signal at 785 nm, and a second excitation signal source configured for emitting said second excitation signal at 783 nm.
18. The Raman spectroscopy system of claim 12 wherein said receiver assembly has a bundle of optical fibres.
19. The Raman spectroscopy system of claim 18 wherein said optical fibers of said bundle extend between first ends and second ends, said first ends and said second ends of said plurality of optical fibers being arranged in a respective one of two two-dimensional arrays.
20. The Raman spectroscopy system of claim 19 wherein said two two-dimensional arrays maintain relative positions of said optical fibers to one another from said first ends to said second ends in a manner that said received first and second emission signals are propagated along said bundle of optical fibers while maintaining said relative positions from said first ends towards said second ends.
21. A method for performing a Raman spectroscopy measurement on a sample, said method comprising: illuminating an area of said sample with an excitation signal, resulting in said area emitting an emission signal; upon receiving said emission signal, measuring a first intensity value being indicative of optical intensity of said emission signal within a first detection band and measuring a second intensity value being indicative of optical intensity of said emission signal within a second detection band, said first detection band being spectrally spaced-apart from said second detection band; and performing said Raman spectroscopy measurement by comparing said first intensity value to said second intensity value.
22. The method of claim 21 wherein said measuring comprises measuring a plurality of intensity values being indicative of optical intensity of said emission signal within corresponding ones of a plurality of spectrally spaced-apart detection bands.
23. The method of claim 22 wherein said plurality of spectrally spaced-apart detection bands has between 1 and 2000 spectrally spaced-apart detection bands, preferably between 1 and 200 spectrally spaced-apart detection bands and most preferably between 1 and 20 spectrally spaced-apart detection bands.
24. The method of claim 22 wherein said plurality of spectrally spaced-apart detection bands are evenly spaced-apart from one another.
25. The method of claim 21 wherein said measuring further comprises measuring a third intensity value indicative of optical intensity of said emission signal within a third detection band, said third detection band being spectrally spaced-apart from said first and second detection bands, said comparing said first intensity value to said second intensity value comprising estimating a fourth intensity value at said third detection band based on said first and second intensity values, said performing comprising comparing said fourth intensity value to said third intensity value.
26. The method of claim 25, wherein said estimating comprises performing a linear regression between said first and second intensity values, and finding an intensity value at said third detection band based on said linear regression.
27. The method of claim 21 wherein at least one of said first and second detection bands has a spectral width between about 0.1 nm and about 10 nm, preferably between about 0.1 nm and about 5 nm, most preferably between about 0.2 nm and 2 nm.
28. The method of claim 21 wherein said first and second detection bands are spectrally spaced-apart by a spectral spacing of between 0.1 nm to 5 nm and most preferably between 0.3 nm and 2 nm.
29. The method of claim 21 wherein said excitation signal has optical power at 785 nm.
30. The method of claim 21 wherein said comparing includes subtracting said first intensity value from said second intensity value.
31. The method of claim 21 further comprising determining whether a region of said area of said sample is unhealthy.
32. The method of claim 31 wherein said determining includes delimiting said unhealthy tissue from said healthy tissue.
33. The method of claim 21 further comprising determining whether a region of said area of said sample contains two or more molecular constituents.
34. A Raman spectroscopy system comprising: an illumination assembly illuminating an area of a sample with an excitation signal, resulting in said area emitting an emission signal; a receiver assembly receiving said emission signal, said receiving assembly having at least a detector measuring a first intensity value being indicative of optical intensity of said emission signal within a first detection band and measuring a second intensity value being indicative of optical intensity of said emission signal within a second detection band, said first detection band being spectrally spaced-apart from said second detection band; and a controller being communicatively coupled to said receiver assembly, said controller having a processor and a memory having stored thereon instructions that when executed by said processor performs said step of comparing said first intensity value to said second intensity value.
35. The Raman spectroscopy system of claim 34 wherein said receiver assembly measures a plurality of intensity values being indicative of optical intensity of said emission signal within corresponding ones of a plurality of spectrally spaced-apart detection bands.
36. The Raman spectroscopy system of claim 35 wherein said plurality of spectrally spaced-apart detection bands has between 1 and 2000 spectrally spaced-apart detection bands, preferably between 1 and 200 spectrally spaced-apart detection bands and most preferably between 1 and 20 spectrally spaced-apart detection bands.
37. The Raman spectroscopy system of claim 35 wherein said plurality of spectrally spaced-apart detection bands are evenly spaced-apart from one another.
38. The Raman spectroscopy system of claim 33 wherein said measuring further comprises measuring a third intensity value indicative of optical intensity of said emission signal within a third detection band, said third detection band being spectrally spaced-apart from said first and second detection bands, said comparing said first intensity to said second intensity values comprising estimating a fourth intensity value indicative of optical power of said emission signal at said third detection band, said performing comprising comparing said fourth intensity value to said third intensity value.
39. The Raman spectroscopy system of claim 37, wherein said estimating comprises performing a linear regression between said first and second intensity values, and finding an intensity value at said third detection band based on said linear regression.
40. The Raman spectroscopy system of claim 34 wherein said receiver assembly has a bundle of optical fibres.
Description
DESCRIPTION OF THE FIGURES
[0051] In the figures,
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DETAILED DESCRIPTION
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[0067] As shown, the illumination assembly 12 is configured for sequentially illuminating an area 18 of a sample 20 with first and second excitation signals 22 and 24. In other words, the area 18 of the sample 20 is illuminated first with the first excitation signal 22 and then with the second excitation signal 24, or vice versa. As can be understood, illuminating the area 18 of the sample 20 in such a manner will result in the area 18 sequentially emitting first and second emission signals 26 and 28 in response to the illumination with the first and second excitation signals 22 and 24, respectively.
[0068] As shown in
[0069] Referring back to
[0070] However, in other embodiments, the first and second excitation signals 22 and 24 can be emitted using a single optical source which is configured for emitting the first and second excitation signals 22 and 24 sequentially such as with tunable optical sources.
[0071] As shown, the receiver assembly 14 is configured for receiving the first and second emission signals 26 and 28 upon their respective emission, and for directing optical power of the first and second emission signals 26 and 28 within a plurality of spaced-apart detection bands 36 to corresponding ones of a plurality of detectors 34. In this example, the detectors 34 are part of a multispectral camera 36. However, in some other embodiments, the detectors 34 can be part of an hyperspectral camera or be provided as a standalone array of detectors.
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[0073] It is emphasized in this example that the detectors 34 are configured for measuring corresponding ones of first intensity values I.sub.1 which are indicative of optical intensity within each of the spaced-apart detection bands 36 in the first emission signal 26. Similarly, the detectors 34 are configured for measuring corresponding ones of second intensity values I.sub.2 which are indicative of optical intensity within each of the spaced-apart detection bands 36 in the second emission signal 28.
[0074] As such, by comparing, the first intensity value I.sub.1 to the second intensity value I.sub.2 for each of the spaced-apart detection bands 36, noise components of the first and second emission signals 26 and 28 can be attenuated, and even canceled, with one another while enhancing Raman components of the first and second emission signals 26 and 28.
[0075] Accordingly, the system 10 can allow performing a Raman spectroscopy measurement based on this comparison. In some embodiments, the comparison process can include subtractions of the first intensity values I.sub.1 from the second intensity values I.sub.2, as schematically illustrated in
[0076] It is envisaged that the way the first and second intensity values I.sub.1 and I.sub.2 are measured within each spaced-apart detection bands 36 can differ from an embodiment to another. For instance, in this embodiment, the first intensity values I.sub.1 correspond to a maximal value of the first emission signal 26 in a corresponding one of the spaced-apart detection bands 36 whereas the second intensity values I.sub.2 correspond to a minimal value of the second emission signal 28 in the corresponding one of the spaced-apart detection bands 36. In some other embodiments, the first intensity values I.sub.1 correspond to the intensity integrated over a corresponding one of the spaced-apart detection bands 36 where the second intensity value I.sub.2 correspond to the intensity integrated over the corresponding one of the spaced-apart detection bands 36.
[0077] Depending on the embodiment, the spaced-apart detection bands 36 of the receiver assembly 14 has between 1 and 2000 spaced-apart detection bands 36, preferably between 1 and 200 spaced-apart detection bands 36 and most preferably between 1 and 20 spaced-apart detection bands 36. It is noted that the speed at which Raman spectroscopy measurements can be performed is generally inversely proportional with the number of spaced-apart detection bands 36. In other words, the lesser the number of spaced-apart detection bands 36 is, the quicker Raman spectroscopy measurements can be performed.
[0078] In some embodiments, the spaced-apart detection bands 36 are evenly spaced-apart whereas the spaced-apart detection bands 36 are unevenly spaced-apart in some other embodiments. For instance, the spaced-apart detection bands can be concentrated over a given spectral region where more Raman scattering is expected from a given type of sample.
[0079] It is intended that in some embodiments, each spaced-apart detection band 36 has a spectral width between about 0.1 nm and about 10 nm, preferably between about 0.1 nm and about 5 nm, most preferably between about 0.2 nm and 2 nm. However, in some other embodiments, the spectral widths of the spaced-apart detection bands 36 can differ from one another. For instance, in some embodiments, the receiver assembly 14 can include one or more filter wheel(s) having laser line filter(s) incorporated thereto to select the spectral width of the integrated signal as well as that of the detection band.
[0080] Measuring the first and second intensity values in more than one of the spectrally spaced-apart detection bands 36 can be omitted in some embodiments. For instance, the first and second intensity values can be measured in only one of the spectrally spaced-apart detection bands 36. For example, in some embodiments, the first and second intensity values are measured only in the right-hand one of the detection bands 36, as shown in solid lines in
[0081] Referring back to
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[0083] Still in this example, the excitation output 48 of the probe 40 acts also as an emission input 64 where the first and second emission signals 26 and 28 are picked up using the focusing lens 58 which collimates the first and second emission signals 26 and 28 in direction of the dichroic notch filter 56, and ultimately towards an emission output 66 of the probe 40.
[0084] In this specific embodiment, the emission output 66 of the probe 40 is optically coupled to the detectors 34 via a plurality of optical fibres 70, i.e., a bundle 72 of optical fibres 70. More specifically, the optical fibers 70 of the bundle 72 extend between first ends 74 and second ends 76, where the first ends 74 and the second ends 76 of the optical fibers 70 are arranged in a respective one of two two-dimensional arrays 78, as best seen in
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[0087] In some embodiments, other intensity values could also be measured at other detection bands 36. In these embodiments, the Raman spectroscopy measurement could be performed by comparing any two of the first, second, or other intensity values to one another.
[0088] As discussed above, the area of a sample can be interrogated spatially so as to measure emission signals from a plurality of coordinates x and y of the sample. Intensity maps 92a, 92b and 92 show intensity values as measured within each one of the detection bands 36a, 36b and 36, respectively, which may result from such a scanning step. For instance, each intensity value of the intensity map 92a is indicative of the intensity of the emission signal measured, within the first detection band 36a, at a corresponding coordinate x and y of the area of the interrogated sample.
[0089] Intensity map 94 shows the result of an exemplary comparison between the intensity maps 92a and 92b. In this specific example, as the first detection band 36a is associated to a lipid band peak and the second detection band 36b is associated to a lipid band minimum, the resulting intensity map 94, resulting from subtracting the intensity maps 36a and 36b to one another, can be indicative of the lipid band.
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[0091] In the embodiment described with reference to
[0092] For instance, in some embodiments, first, second and third excitation signals are used to excite the area of the sample with first, second and third spectral contents, each being spectrally shifted from one another. In this specific embodiment, the first, second and third spectral contents can be tuned so that a single detection band can measure the lipid peak band and the first and second lipid band minima. More specifically, the single detection band can measure a first intensity value when the area of the sample is excited using the first excitation signal, the first intensity value being associated to the lipid band peak; the single detection band can measure a second intensity value I.sub.2 when the area of the sample is excited using the second excitation signal, the second intensity value I.sub.2 being associated to the first lipid band minimum; and the single detection band can measure a third intensity value I.sub.3 when the area of the sample is excited using the third excitation signal, the third intensity value I.sub.3 being associated to the second lipid band minimum. In such embodiments, the Raman spectroscopic measurement can be performed by estimating a fourth intensity value I.sub.4 indicative of optical power of the emission signal at the single detection band based on the second and third intensity values I.sub.2 and I.sub.3. In this specific embodiment, the estimation can be performed on the basis of a linear regression (e.g., interpolation, extrapolation) using the second and third intensity values I.sub.2 and I.sub.3 such as to allow the fourth intensity value I.sub.4 to be found at the single detection band. Accordingly the fourth intensity value I.sub.4 is associated to the lipid band peak minus an average of the first and second lipid band minima. Once the fourth intensity value I.sub.4 is determined, the Raman spectroscopy measurement can be performed by comparing the first and fourth intensity values I.sub.1 and I.sub.4 to one another.
[0093] In other embodiments, the system 10 can be alternatively or additionally used determine whether a region of the area 18 of the sample 20 is unhealthy, in which case healthy tissue can be delimited from unhealthy tissue. An example of such determination is described in International Application Publication no. WO2015/154187, which is hereby incorporated by reference.
[0094] As can be understood, the controller 16 of
[0095] Referring to
[0096] The processor 1002 can be, for example, a general-purpose microprocessor or microcontroller, a digital signal processing (DSP) processor, an integrated circuit, a field programmable gate array (FPGA), a reconfigurable processor, a programmable read-only memory (PROM), or any combination thereof.
[0097] The memory 1004 can include a suitable combination of any type of computer-readable memory that is located either internally or externally such as, for example, random-access memory (RAM), read-only memory (ROM), compact disc read-only memory (CDROM), electro-optical memory, magneto-optical memory, erasable programmable read-only memory (EPROM), and electrically-erasable programmable read-only memory (EEPROM), Ferroelectric RAM (FRAM) or the like.
[0098] Each I/O interface 1006 enables the computing device 1000 to interconnect with one or more input devices, such as the detectors 34 (e.g., hyperspectral or multispectral cameras), position sensor(s), Global Positioning System (GPS) sensor(s), accelerometer(s), humidity sensor(s), keyboard(s), mouse(s) and the like, or with one or more output devices, such as the illumination assembly 12, display(s), user interface(s) and the like.
[0099] Each I/O interface 1006 enables the controller 16 of
[0100] The computing device 1000 described above is meant to be an example only. Other suitable embodiments of the controller 16 of
[0101] Is it envisaged that the controller 16 can have one or more trained engines that are trained using supervised learning. In such supervised learning, each training image in a set of training images may be associated with a label while training. Supervised machine learning engines can be based on Artificial Neural Networks (ANN), Support Vector Machines (SVM), capsule-based networks, Linear Discriminant Analysis (LDA), classification tree, a combination thereof, and any other suitable supervised machine learning engine. However, as can be understood, in some other embodiments, it is intended that the trained engine(s) can be trained using unsupervised where only training images are provided (no desired or truth outputs are given), so as to leave the trained engine(s) find a structure or resemblances in the provided training images. For instance, unsupervised clustering algorithms can be used. Additionally or alternately, the trained engine(s) can involve reinforcement learning where the trained engine(s) interact with example training images and when they reach desired or truth outputs, the trained engine(s) are provided feedback in terms of rewards or punishments. Two exemplary methods for improving classifier performance include boosting and bagging which involve using several classifiers together to “vote” for a final decision. Combination rules can include voting, decision trees, and linear and nonlinear combinations of classifier outputs. These approaches can also provide the ability to control the tradeoff between precision and accuracy through changes in tissue types or thresholds. These methods can lend themselves to extension to large numbers of localized features. In any case, some of these engines may require human interaction during training, or to initiate the engine, however human interaction may not be required while the engine is being carried out, e.g., during analysis of an accessed image. See Nasrabadi, Nasser M. “Pattern recognition and machine learning.” Journal of electronic imaging 16.4 (2007): 049901 for further detail concerning such trained engines.
[0102] As can be understood, the examples described above and illustrated are intended to be exemplary only. Although the example above involves the use of two excitation signals, other embodiments could involve the use of more than two excitation signals which are slightly spectrally spaced-apart from one another. For instance, three, four, five or more than five excitation signals could be used, which would provide a corresponding number of emission signals. In such embodiments, one or more detection bands can be used to measure the corresponding emission signal(s). While the embodiments presented herein can use a bundle of optical fibres, the methods and systems described herein are not limited to such a bundle of optical fibres. The bundle of optical fibres can thus be omitted. Moreover, in some embodiments described above, the first intensity values are subtracted from the second intensity values. However, in other embodiments, the second intensity values can be subtracted from the first intensity values. Any other suitable arithmetic operation can be performed on the first and second intensity values to compare them to one another. The methods and systems described herein can be used to delimitate two or more molecular constituents such as biological tissue types or other non-biological samples. Examples of spectrally-spaced detection bands can include, but is not limited, a band ranging between 1255-1270 cm.sup.−1, a band ranging between 1290-1305 cm.sup.−1, a band ranging between 1440-1455 cm.sup.−1, and a band ranging between 1650-1665 cm.sup.−1. The scope is indicated by the appended claims.