COMPOSITIONS AND METHODS FOR ASSESSING THE RISK OF CANCER OCCURRENCE
20210373027 · 2021-12-02
Assignee
Inventors
Cpc classification
G01N33/74
PHYSICS
C07K16/26
CHEMISTRY; METALLURGY
International classification
C07K16/26
CHEMISTRY; METALLURGY
Abstract
The present invention provides a method for evaluating the risk of occurrence of cancer in an individual.
Claims
1. A method for evaluating the risk of occurrence of a cancer in a subject who has not been previously diagnosed with cancer, said method comprising the steps of: a) determining the level of progastrin in a sample of said subject; b) determining the risk that said subject will develop a cancer based on the level of step a).
2. The method of claim 1, wherein the determination of step a) includes contacting said sample with at least one progastrin-binding molecule and measuring the binding of said progastrin-binding molecule to progastrin.
3. The method of claim 2, wherein said agent binding to progastrin is an anti-progastrin antibody, or an antigen-binding fragment thereof.
4. The method of claim 3, wherein said antibody is a monoclonal antibody or a polyclonal antibody.
5. The method of any one of claim 3 or 4, wherein said antibody is selected among N-terminal anti-progastrin antibodies and C-terminal anti-progastrin antibodies.
6. The method of claims 3 to 5, wherein said antibody is a monoclonal antibody selected in the group consisting of: A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 4, 5 and 6, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 7, 8 and 9, respectively, A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 10, 11 and 12, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 13, 14 and 15, respectively, A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 16, 17 and 18, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 19, 20 and 21, respectively, A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 22, 23 and 24, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 25, 26 and 27, respectively, A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 28, 29 and 30, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 31, 32 and 33, respectively A monoclonal antibody comprising a heavy chain comprising at least one, preferentially at least two, preferentially three, of CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 34, 35 and 36, respectively, and a light chain comprising at least one, preferentially at least two, preferentially three, of CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 37, 38 and 39, respectively, and A monoclonal antibody produced by the hybridoma deposited at the CNCM, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France, on 27 Dec. 2016, under reference 1-5158.
7. The method of any one of claims 1 to 6, wherein the determination of step a) includes: (i) contacting said sample with a first progastrin-binding molecule which binds to a first part of progastrin, and (ii) contacting said sample with a second progastrin-binding molecule which binds to a second part of progastrin.
8. The method of claim 7, wherein the first progastrin-binding molecule binds an epitope within the C-terminus of progastrin.
9. The method of any one of claim 7 or 8, wherein said progastrin-binding molecule is a monoclonal antibody produced by the hybridoma deposited at the CNCM, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France, on 27 Dec. 2016, under reference 1-5158.
10. The method of any one of claims 7 to 9, wherein the second progastrin-binding molecule binds an epitope within the N-terminus of progastrin.
11. The method of any one of claims 7 to 10, wherein said second progastrin-binding molecule is a polyclonal antibody binding an epitope within the N-terminus of progastrin or a monoclonal antibody comprising a heavy chain comprising the following three CDRs, CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 16, 17 and 18, respectively, and a light chain comprising the following three CDRs, CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 19, 20 and 21, respectively.
12. The method of any one of claims 1 to 11, wherein the level of progastrin is determined in step a) with an ELISA.
13. The method according to any one of claims 1 to 12, wherein biological sample is chosen among: blood, serum and plasma.
14. A kit comprising at least one anti-progastrin antibody as defined in any one of claims 2 to 6 for evaluating the risks of developing cancer in a subject who has not been previously diagnosed with cancer.
15. The kit of claim 14, comprising: a first anti-progastrin antibody, wherein said antibody is wherein said first anti-progastrin antibody is a monoclonal antibody produced by the hybridoma deposited at the CNCM, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France, on 27 Dec. 2016, under reference 1-5158; and a second anti-progastrin antibody, wherein said second anti-progastrin antibody is a polyclonal antibody binding the N-terminus of progastrin or a monoclonal antibody comprising a heavy chain comprising the following three CDRs, CDR-H1, CDR-H2 and CDR-H3 of amino acid sequences SEQ ID N.sup.o 16, 17 and 18, respectively, and a light chain comprising the following three CDRs, CDR-L1, CDR-L2 and CDR-L3 of amino acid sequences SEQ ID N.sup.o 19, 20 and 21, respectively.
16. A product/computer program containing a set of instructions characteristic of implementation of the method of any one of claims 1 to 14.
17. A processing system including a computation unit and an input interface, said system including means for implementing the method of any one of claims 1 to 14.
Description
[0138] FIGURE LEGENDS
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EXAMPLES
Example 1: Detection of Plasmatic Progastrin Concentration Using Polyclonal Antibodies
[0155] Plasma progastrin levels were quantified by ELISA through the use of two specific anti-progastrin antibodies: capture antibodies are coated on the wells of the plate, whereas revelation antibodies are used to detect progastrin and mediates revelation of the signal.
[0156] In the present example, quantification is based on the ELISA method which allows, through the use of a substrate whose reaction emits light, to assign a value proportional to the luminescence amount of antibodies bound to the antigen retained by capture antibodies.
[0157] Material
[0158] Reagents and apparatus are listed in Table 7:
TABLE-US-00007 TABLE 7 Designation Provider Référence Plates MaxiSORP white Nunc, 96 wells Dutscher #055221 Sodium Carbonate/Bicarbonate Sigma #21851 DPBS 1X Lonza #P04-36500 Tween-20 Biosolve #20452335 BSA Euromedex #04-100- 810-C Streptavidin-HRP Pierce #21130 (Thermo) SuperSignal ELISA Femto Maximum Pierce #37074 Sensitivity Substrate (Thermo) Anti-ProGastrin Polyclonal Antibody Eurogentec /
[0159] Polyclonal antibodies were obtained by immunizing a rabbit with N-terminal progastrin (SEQ ID N.sup.o 2) or with C-terminal progastrin corresponding to amino acids 71 to 80 of hPG and having the sequence FGRRSAEDEN (SEQ ID N.sup.o 40), according to standard protocols.
[0160] The binding characteristics of polyclonal antibodies against progastrin used in this assay are the following: absence of binding to G34-Gly, G34, G17-Gly, G17, binding to full length progastrin.
[0161] 96 wells plates are coated by preparing a solution of carbonate—sodium bicarbonate, 50 mM pH 9.6 by dissolving the contents of one capsule in 100 ml of MilliQ water. A solution of capture antibody (3 μg/ml), corresponding to polyclonal antibodies obtained by using the C-terminal of progastrin FGRRSAEDEN (SEQ ID N.sup.o 40) is prepared in carbonate buffer. 100 microliters of antibodies solution is added to each well and incubated at 4° C. for 16 hours (1 night). Plates are then blocked by eliminating the antibodies solution and wash 3 times with 300 μl 1×PBS/0.1% Tween-20, then adding 200 μl of blocking buffer (1×PBS/0.1% Tween-20/0.1% BSA) per well, and incubated 2 hours at 22° C. Blocking buffer is then eliminated, wells are washed 3 times with 300 μl 1×PBS/0.1% Tween-20.
[0162] Plasma dilution is performed as follows: The plasma is used pure, diluted 1/2, 1/5 and 1/10. Dilutions are prepared from pure plasma in 1×PBS/0.1% Tween 20/0.1% BSA.
[0163] For the control test, ELISA in the presence of a known concentration of progastrin, progastrin dilution is prepared as follows: stock recombinant PG (Full length human progastrin produced in E. coli and affinity purified with Glutathione agarose/Tag removal (Tev)/IMAC Counter purification/dialysis, from Institut Pasteur, Paris, France) is prepared at a concentration of 0.45 mg/ml (45 microM), in triplicate. Ranges of progastrin concentrations were prepared as follows: [0164] Solution A: Pre-dilution 1/10, 2 μl of stock+18 μl of the buffer [0165] Solution B: Pre-dilution 1/100, 10 μl of A+90 μl of the buffer [0166] Solution C: Pre-dilution 1/1000, 10 μl of B+90 μl of the buffer [0167] Solution D: 500 pM, 5.55 μl of C+494.5 μl of the diluent [0168] Solution E: 250 pM, 250 μl of D+250 μl of the diluent [0169] Solution F: 100 pM, 200 μl of E+300 μl of the diluent [0170] Solution G: 50 pM, 250 μl of F+250 μl of the diluent [0171] Solution H: 25 pM, 200 μl of G+200 μl of the diluent [0172] Solution I: 10 pM, 100 μl of H+150 μl of the diluent
[0173] The range of recombinant PG is linear and can therefore be more or less extensive according to the antibody used.
[0174] For the preparation of test samples, approximately 500 μl of each sample are set aside and stored until analysis (and confirmation if necessary) of the results. 100 μl of each point of the range and/or plasmas are assayed pure, diluted to 1/2, 1/5 and 1/10, and incubated for 2 hours at 22° C. on the plates.
[0175] For the revelation of the test, the plates are washed 3 times with 300 μl 1×PBS/0.1% Tween-20. A solution of the polyclonal rabbit anti-progastrin antibody, wherein said antibodies have been obtained by using the N-terminal part of progastrin as an immunogen, coupled to biotin to 0.5 μg/ml, is prepared by dilution in 1×PBS/0.1% Tween-20/0.1% BSA. 100 μl of this solution is added to each well. Incubation takes place for 1 hour at 22° C. The revelation with streptavidin-HRP is performed by removing detection antibody and wash 3 times with 300 μl 1×PBS/0.1% Tween-20, then preparing a solution of Streptavidin-HRP at 20 ng/ml diluted in 1×PBS/0.1% Tween-20/0.1% BSA, wherein 100 Add 100 μl of this solution is added to each well, before incubation for 1 hour at 22° C.
[0176] The detection consists of eliminating streptavidin-HRP and wash 3 times with 300 μl 1×PBS/0.1% Tween-20, then adding 100 μl of chemiluminescent substrate solution per well. The substrate solution is prepared by mixing equal volumes of the two solutions SuperSignal ELISA Femto kit, 20 ml+20 ml, 30 minutes before use and stored at room temperature in the dark. Luminescence is read after 5 minutes incubation at room temperature in the dark.
[0177] For each condition, the test is performed in triplicate and the results of the ranges will be presented as a graph showing the change in luminescence depending on the progastrin concentration. For each plasma dilution, the concentration of progastrin is determined using the equation of the linear regression line of the corresponding range (range 1/10th for a sample diluted to 1/10th).
[0178] Methods and Results
[0179] Progastrin levels were determined in plasma samples from subjects who were known to have developed cancer later. Progastrin was captured with polyclonal antibodies specific for the C-terminus. Detection was performed with labelled polyclonal antibodies specific for the N-terminus.
[0180] Importantly, at the time of sample collection, these subjects had never been diagnosed with cancer and did not show any symptom relating to cancer. The control was constituted by plasma samples from the general population.
[0181] The results are shown in
[0182] These data demonstrate that patients who will develop cancer have detectable levels of progastrin in their plasma whereas healthy control individuals have none. Progastrin can be detected even before any cancer can be diagnosed, making progastrin useful biomarker for the onset of cancer. ROC analysis confirmed the predictive nature of progastrin for each of the above-listed cancers.
[0183] These data demonstrate that patients with a risk of developing cancer have higher concentration of progastrin in their plasma compared to healthy control individuals.
Example 2: Detection of Plasmatic Progastrin Concentration Using a Combination of Polyclonal Antibodies and Monoclonal Antibodies
[0184] In the present example, plasma progastrin levels were quantified by ELISA through the use of antibody specific for human progastrin (hPG) pre-coated on a 96-well plate. Standards and samples are added to the wells, and any hPG present binds to the immobilized capture antibody. The wells are washed and an anti-hPG detection antibody horseradish peroxidase (HRP) conjugate is added, producing an antibody-antigen-antibody “sandwich.” After a second wash, TMB substrate solution is added, which produces a blue color in direct proportion to the amount of hPG present in the initial sample. The Stop Solution changes the color from blue to yellow, and the wells are read at 450 nm with a microplate reader.
[0185] Polyclonal antibodies were obtained by immunizing a rabbit with N-terminal progastrin (SEQ ID N.sup.o 2) or with C-terminal progastrin corresponding to amino acids 71 to 80 of hPG and having the sequence FGRRSAEDEN (SEQ ID N.sup.o 40), according to standard protocols.
[0186] Monoclonal antibodies were obtained by using hybridomas producing antibodies against N-terminal progastrin (SEQ ID N.sup.o 2) or against C-terminal progastrin corresponding to amino acids 71 to 80 of hPG and having the sequence FGRRSAEDEN (SEQ ID N.sup.o 40), according to standard protocols.
[0187] The binding characteristics of polyclonal and monoclonal antibodies against progastrin used in this assay are the following: absence of binding to G34-Gly, G34, G17-Gly, G17, binding to full length progastrin.
[0188] For the control test, ELISA in the presence of a known concentration of progastrin, progastrin dilution is prepared as follows: stock recombinant PG (Full length human progastrin produced in E. coli and affinity purified with Glutathione agarose/Tag removal (Tev)/IMAC Counter purification/dialysis, from Institut Pasteur, Paris, France) is prepared at a concentration of 0.45 mg/ml (45 microM), in triplicate. Ranges of progastrin concentrations were prepared as follows: [0189] Solution A: Pre-dilution 1/10, 2 μl of stock+18 μl of the buffer [0190] Solution B: Pre-dilution 1/100, 10 μl of A+90 μl of the buffer [0191] Solution C: Pre-dilution 1/1000, 10 μl of B+90 μl of the buffer [0192] Solution D: 500 pM, 5.55 μl of C+494.5 μl of the diluent [0193] Solution E: 250 pM, 250 μl of D+250 μl of the diluent [0194] Solution F: 100 pM, 200 μl of E+300 μl of the diluent [0195] Solution G: 50 pM, 250 μl of F+250 μl of the diluent [0196] Solution H: 25 pM, 200 μl of G+200 μl of the diluent [0197] Solution I: 10 pM, 100 μl of H+150 μl of the diluent
[0198] The range of recombinant PG is linear and can therefore be more or less extensive according to the antibody used.
[0199] Methods and Results
[0200] Progastrin levels were determined in plasma samples from subjects who were known to have developed cancer later. Progastrin was captured with the C-terminus monoclonal antibody mAb 14 produced by hybridoma 2H9F4B7 described in WO 2011/083088 (Hybridoma 2H9F4B7 was deposited under the Budapest Treaty at the CNCM, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France, on 27 Dec. 2016, under reference 1-5158.). Detection was performed with labelled polyclonal antibodies specific for the N-terminus.
[0201] Importantly, at the time of sample collection, these subjects had never been diagnosed with cancer and did not show any symptom relating to cancer. The control was constituted by plasma samples from the general population.
[0202] The results are shown in
[0203] These data demonstrate that patients who will develop cancer have detectable levels of progastrin in their plasma whereas healthy control individuals have none. Progastrin can be detected even before any cancer can be diagnosed, making progastrin useful biomarker for the onset of cancer.
[0204] These data demonstrate that patients with a risk of developing cancer have higher concentration of progastrin in their plasma compared to healthy control individuals.
Example 3: Detection of Plasmatic Progastrin Concentration Using a Combination of Monoclonal Antibodies
[0205] In the present example, plasma progastrin levels were quantified by ELISA through the use of antibody specific for human progastrin (hPG) pre-coated on a 96-well plate. Standards and samples are added to the wells, and any hPG present binds to the immobilized capture antibody. The wells are washed and an anti-hPG detection antibody horseradish peroxidase (HRP) conjugate is added, producing an antibody-antigen-antibody “sandwich.” After a second wash, TMB substrate solution is added, which produces a blue color in direct proportion to the amount of hPG present in the initial sample. The Stop Solution changes the color from blue to yellow, and the wells are read at 450 nm with a microplate reader.
[0206] Polyclonal antibodies were obtained by immunizing a rabbit with N-terminal progastrin (SEQ ID N.sup.o 2) or with C-terminal progastrin corresponding to amino acids 71 to 80 of hPG and having the sequence FGRRSAEDEN (SEQ ID N.sup.o 40), according to standard protocols.
[0207] Monoclonal antibodies were obtained by using hybridomas producing antibodies against N-terminal progastrin (SEQ ID N.sup.o 2) or against C-terminal progastrin corresponding to amino acids 71 to 80 of hPG and having the sequence FGRRSAEDEN (SEQ ID N.sup.o 40), according to standard protocols.
[0208] The binding characteristics of polyclonal and monoclonal antibodies against progastrin used in this assay are the following: absence of binding to G34-Gly, G34, G17-Gly, G17, binding to full length progastrin.
[0209] For the control test, ELISA in the presence of a known concentration of progastrin, progastrin dilution is prepared as follows: stock recombinant PG (Full length human progastrin produced in E. coli and affinity purified with Glutathione agarose/Tag removal (Tev)/IMAC Counter purification/dialysis, from Institut Pasteur, Paris, France) is prepared at a concentration of 0.45 mg/ml (45 microM), in triplicate. Ranges of progastrin concentrations were prepared as follows: [0210] Solution A: Pre-dilution 1/10, 2 μl of stock+18 μl of the buffer [0211] Solution B: Pre-dilution 1/100, 10 μl of A+90 μl of the buffer [0212] Solution C: Pre-dilution 1/1000, 10 μl of B+90 μl of the buffer [0213] Solution D: 500 pM, 5.55 μl of C+494.5 μl of the diluent [0214] Solution E: 250 pM, 250 μl of D+250 μl of the diluent [0215] Solution F: 100 pM, 200 μl of E+300 μl of the diluent [0216] Solution G: 50 pM, 250 μl of F+250 μl of the diluent [0217] Solution H: 25 pM, 200 μl of G+200 μl of the diluent [0218] Solution I: 10 pM, 100 μl of H+150 μl of the diluent
[0219] The range of recombinant PG is linear and can therefore be more or less extensive according to the antibody used.
[0220] Methods and Results
[0221] Progastrin levels were determined in plasma samples from subjects who were known to have developed cancer later. Progastrin was captured with the C-terminus monoclonal antibody mAb 14 produced by hybridoma 2H9F4B7 described in WO 2011/083088 (Hybridoma 2H9F4B7 was deposited under the Budapest Treaty at the CNCM, Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France, on 27 Dec. 2016, under reference 1-5158.). Detection was performed with labelled monoclonal antibody mAb 16 described in WO 2011/083088 which is specific for the N-terminus.
[0222] Importantly, at the time of sample collection, these subjects had never been diagnosed with cancer and did not show any symptom relating to cancer. The control was constituted by plasma samples from the general population.
[0223] The results are shown in
[0224] These data demonstrate that mAb-pAb and mAb-mAb ELISA sandwich tests detect both progastrin in the plasma of patients. Importantly, no significant difference between both tests could be identified. In particular, the sensitivity of the mAb-pAb and mAb-mAb sandwiches were highly similar. Therefore mAb-mAb ELISA sandwich can be used reliably to detect progastrin in the plasma of patient even before any cancer can be diagnosed, making progastrin useful biomarker for the onset of cancer.
[0225] These data demonstrate that patients with a risk of developing cancer have higher concentration of progastrin in their plasma compared to healthy control individuals.