TGF- RECEPTOR II ISOFORM, FUSION PEPTIDE, METHODS OF TREATMENT AND METHODS IN VITRO
20210371502 · 2021-12-02
Assignee
- CONSEJO NACIONAL DE INVESTIGACIONES CIENTÍFICAS Y TÉCNICAS (Ciudad Autónoma de Buenos Aires, AR)
- FUNDACIÓN ARTICULAR (Provincia de Buenos Aires, AR)
- INIS BIOTECH LLC (Milford Kent Country, DC, US)
Inventors
- Ana ROMO (Buenos Aires, AR)
- Anabela Belen LA COLLA (Buenos Aires, AR)
- Matias Adan PREISEGGER (Buenos Aires, AR)
- Marcela Soledad BERTOLIO (Buenos Aires, AR)
- Ricardo Alfredo DEWEY (Buenos Aires, AR)
- Pamela Daiana VAZQUEZ (Buenos Aires, AR)
- Andrea Nancy CHISARI (Buenos Aires, AR)
- Tania Melina RODRIGUEZ (Buenos Aires, AR)
- Benito Jorge VELASCO ZAMORA (Buenos Aires, AR)
Cpc classification
C07K16/2863
CHEMISTRY; METALLURGY
C12N7/00
CHEMISTRY; METALLURGY
G01N33/6872
PHYSICS
C12N2740/16043
CHEMISTRY; METALLURGY
C07K2319/30
CHEMISTRY; METALLURGY
C07K16/00
CHEMISTRY; METALLURGY
A61K9/0019
HUMAN NECESSITIES
G01N2800/56
PHYSICS
C12N2740/15043
CHEMISTRY; METALLURGY
C07K2317/34
CHEMISTRY; METALLURGY
G01N2800/102
PHYSICS
A61P1/16
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
International classification
A61K9/00
HUMAN NECESSITIES
A61P1/16
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
C12N7/00
CHEMISTRY; METALLURGY
Abstract
An isoform of the TGF beta receptor II comprising a sequence of about of 80 amino acids and lacking a transmembrane domain. The isoform comprises the amino acid sequence set forth in SEQ ID No. 12. The isoform may have the amino acid sequence set forth in SEQ ID No. 2 or sequences having at least 85% sequence identity to the sequence set forth in SEQ ID No. 2. A fusion peptide is provided comprising an isoform of the TGF beta II receptor fused to a ligand, wherein a vector comprising the fusion peptide is used to treat cancer and/or hepatic fibrosis. An antibody binding the soluble isoform of the TGF beta II receptor is provided. The antibody binds the amino acid sequence shown in SEQ ID No. 12 and is used in in vitro methods.
Claims
1-7. (canceled)
8. An antibody binding an isoform of the TGF beta receptor II (TβRII-SE) fused to a ligand wherein the isoform comprises an amino acid sequence having at least 85% sequence identity to SEQ ID No. 2.
9. The antibody according to claim 8, wherein the antibody is selected from the groups consisting of monoclonal antibodies, polyclonal antibodies, and fragments thereof.
10. The antibody according to claim 8, wherein binds to the amino acid sequence set forth in SEQ ID No. 12.
11. A method of treating hepatic fibrosis or cancer diseases, comprising the step of administering to a mammal in need thereof a vector having peptide codified by a polynucleotide sequrnce set forth in SEQ ID No. 7.
12. The method according to claim 11, when de disease is hepatic fibrosis the administration is intra-hepatic.
13. The method according to claim 11, when the disease is cancer the administration is intra-tumoral.
14. A method to establish rheumatoid arthritis disease activity, wherein said method comprises at least one of the following: the determination of the percentage of neutrophils expressing the isoform TβRII-SE or the intracellular concentration of the isoform TβRII-SE in neutrophils.
15. The method according to claim 14, wherein the percentage of neutrophils expressing the isoform TβRII-SE is inversely proportional to rheumatoid arthritis disease activity levels.
16. The method according to claim 14, wherein intracellular TβRII-SE concentration is inversely proportional to rheumatoid arthritis disease activity levels.
17. A method to detect an isoform of the TGF beta receptor II (TβRII-SE) fused to a ligand, the isoform comprises an amino acid sequence havina at least 85% sequence identity to SEQ ID No. 2, the method comprisinq the steps of: a) isolation of blood cells; b) permeabilization of these cells; c) binding of an antibody recognizing the aminoacid sequence shown in SEQ ID N° 12 in the permeabilized cells of the previous stage, and d) detection.
18. The method according to claim 17, wherein blood cells are neutrophils.
19. The method according to claim 17, wherein said method is selected from the group consisting of In-cell ELISA and flow cytometry.
20. A method of treating diseases associated to TGF-β dysregulation comprising the step of administering to a mammal in need thereof a pepetide comprising an isoform of the TGF beta receptor II (TβRII-SE) fused to a ligand.
Description
DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE INVENTION
[0070] A variant or isoform of the TGF beta receptor II is disclosed, which is expressed in human cells referred to herein as endogenous soluble TβRII (TβRII-SE) and that contrarily to other isoforms acts like a TGF-β1 agonist.
[0071] By using specific primers, a region of the human TβRII mRNA from T-lymphocytes only encoding the extracellular (ECD) and the transmembrane (TMD) domains and excluding the intracellular domain (ICD) was initially amplified by RT-PCR, (
[0072] After the PCR reaction, DNA products were cloned into the pGEM-T Easy plasmid. Plasmids were digested with AgeI and SalI and revealed in an agarose gel the presence of clones with inserts of three different sizes (
[0073] DNA sequencing and BLAST alignment (NCBI) of all clones indicated that clones 3, 7, 8, 11, and 12 (582 bp) were identical to human TGF β receptor II variant A (TβRII-A). Additionally, clone 2 (657 bp) showed 100% identity with the isoform TβRII-B. Clone 10 (433 bp) was similar to the TβRII-A sequence but with an additional 149 bp deletion. In this clone, the last 62 bp encoded by exon II and the first 88 bp encoded by exon III were absent, TβRII-SE (SEQ ID No. 1) (
[0074] The alignment of the predicted amino acid sequence of all three isoforms (
[0075] This isoform differs in 12 amino acids at the carboxyl end compared to the membrane bound variants of TβRII (isoforms A and B). Due to this, and according to the predicted amino acid sequence, the TβRII-SE isoform of clone 10 lacks pivotal sites for the productive action of TGF-β such as amino acid 176 of SEQ ID No. 3 that contributes to the ligand-receptor binding through hydrophobic contact; amino acid E142 of SEQ ID No. 3 which forms hydrogen bonds with R25 of TGF-β increased affinity and determined binding specificity and amino acid C71 of SEQ ID No. 3 which forms a disulfide bridge with C54 of the same receptor (see
[0076] As previously mentioned, the new isoform is referred to as TβRII Soluble Endogenous (TβRII-SE). The TβRII-SE isoform is different from the secretable genetically engineered TβRII isoform. The latter is an artificial TβRII receptor with a truncated TβRII-A fused to the Fc region of human IgM and blocks the effects of TGF-β, thus acting as an antagonist (reference, R. J Akhurst. J. Clin. Invest. 109: 1533-3610, 2002).
[0077] To determine the theoretical molecular weight of the TβRII-SE isoform, post-translational modifications (PTM) predicted from the amino acid sequence (SEQ ID No. 2) were established by using different computer programs (Table 1). In this analysis, three glycation sites at K46, K52 and K78 (NetGlycate program) (Johansen, M. B.; Glycobiology 16: 844-853, 2006); three phosphorylation sites at S31, S59 and Y73 (NetPhos program) (Blom, N.; Journal of Molecular Biology 294: 1351-1362, 1999) and one site for sumoylation in K46 (SUMOplot™ program, ABGENT, CA, USA) were identified. On the other hand, sites for sulfonation, C-mannosylation, O-GalNAC glycosilation, O-glycosilation, N-glycosilation, myristoylation, and palmitoylation were not found in TβRII-SE. In this study it was estimated that the molecular weight of the mature TβRII-SE isoform was of about 18.4 kDa.
TABLE-US-00001 TABLE 1 In silico analysis of the TβRII-SE amino acid sequence showing predicted post- translational modifications and molecular weight with and without modifications. Predicted pl/theoretical 9.64/9161.72 Mw pl/Mw without a signal 9.05/6532.51 6,532.51 kDa peptide Secretion probability of 0.960 (first 12 aa) SignalP Program the signal peptide Clivage site Between pos. 23 SignalP Program and 24 C-mannosylation No sites GalNAc O-glycosylation No sites Glycations 3 sites (Lys 46, 52, NetGlycate Program 0.558 kDa and 78) (0.186 kDa each) N-glycosylations No sites NetNGlyc Program O-Glycosylations No sites (OGPT Program) O-(beta)-GlcNAc No sites Myristoylation No sites Palmitoylation No sites Phosphorylation 3 sites (Ser 31 and NetPhos 0.285 kDa 59, Tyr 79) Program (0.095 Da.sup. each) Sulfonations No sites Addition of SUMO 1 site (Lys 46) SUMOplot 11 kDa protein program Final Mw with 18.4 kDa modifications
[0078] To confirm whether TβRII-SE mRNA was also present in human cells other than lymphocytes, we amplified by RT-PCR using the same set of primers various human cell lines and primary cultures (
[0079] To check whether TβRII-SE is also present in leukocytes different from T-lymphocytes, granulocytes, monocytes, B-cells and T-cells were purified from human peripheral blood by density gradient and subsequent magnetic immune-purification with specific monoclonal antibodies, to high purity (
[0080] To determine whether TβRII-SE may be secreted to the extra cellular medium, TβRII-SE cDNA was cloned downstream from the ubiquitous promoter CMV in a self-inactivating (SIN) bicistronic lentiviral vector also expressing eGFP, as described in the examples, to generate the Lt-TβRII-SE vector. As a control, two lentiviral vectors were used: one bicistronic encoding a dominant negative TβRII mutant together with eGFP (Lt-TβRIIA-DN) and another encoding eGFP alone (Lt-eGFP), also under the action of the CMV promoter (
[0081] With these lentiviral vectors, shown in
[0082] The molecular weight of TβRII-SE detected by Western blot is in agreement with the predicted molecular weight, after the addition of post-translational modifications (18 kDa) (Table 1). This is the first evidence ever that there exists a new secretable TβRII receptor variant or isoform in human cells.
[0083] To show the function of the TβRII-SE isoform, functional assays were carried out wherein untransduced, expressing nearly undetectable levels of TβRII-SE, transduced with lentiviral vectors encoding eGFP alone, or bicistronics together with either TβRII-SE or the dominant negative (DN) mutant of the TβRIIA variant known to work as a TGF-β1 antagonist, A549 cells were used.
[0084] Initially, MTT ((3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide; thiazolyl blue) assays were performed to evaluate if overexpression of TβRII-SE inhibits or not cell proliferation in the presence of 0.4 nM TGFβ-1 (
[0085] Additionally, to check whether TβRII-SE acts as a TGFβ-1 agonist, A459 cells either overexpressing TβRII-SE or not (untransduced cells or UT) were incubated in the presence of increasing concentrations of TGFβ-1 (
[0086] To further assess the agonistic role of the TβRII-SE isoform, hASCs were transduced with Lt-TβRII-SE, Lt-TβRIIA-DN, and Lt.eGFP, at an MOI of 150 as described in the examples. Seventy two hours after transduction the percentage of eGFP expressing cells was measured by flow cytometry (
[0087] RT-PCR performed on poly A+ mRNA from either transduced or untransduced hASC cells showed the pattern of TβRII isoforms expression depicted in
[0088] mRNA levels of all three isoforms of Type II TGF-β receptor were also quantified by qRT-PCR (
[0089] This compensation effect was also verified by addition of exogenous TGF-β1 and analysis of mRNA levels of the TβRII variants in hASCs cells (
[0090] According to this, it was also found that mRNA of both TβRII-A and TβRII-B are highly upregulated (40- and 50-fold increase, respectively) in cells overexpressing Lt-TβRII-SE in the presence of physiological concentrations of TGF-β1 compared to levels of mRNA produced in the absence of exogenous TGF-β1, further confirming the role of TβRII-SE acting as a TGF-β1 agonist by increasing the expression of membrane-bound receptors TβRII and TβRII-B (
[0091] Furthermore, the effect of TβRII-SE recombinant isoform was measured on a panel of 80 cytokines secreted by hASCs cells (
TABLE-US-00002 TABLE 2 Autocrine TGF-β1 DN SE DN SE Hematopoietic cytokines Insulin Like Growth Factor Superfamily G-CSF ↓ ↓ IGF-1 ↓ ↓ M-CSF ↑ UC IGFBP-1 ↑ UC GM-CSF ↑ ↑ IGFBP-3 ↓ (15.60) ↓ IL-6* UC UC IGFBP-4 abs abs IL-7 ↑ (2.02) ↓ Tumor Necrosis Factor Superfamily LIF UC UC TNF-α ↑ (7.77) ↓ FLT3-L UC ↓ TNF-β UC ↓ (1.85) SCF abs abs LIGHT abs abs IL-3 ↑ UC Fibroblast Growth Factor Family Oncostatin M UC ↓ FGF-7 UC ↓ Angiogenic cytokines FGF-9 ↑ UC VEGF ↑ (0.65) ↓ (1.85) Neurotrophins Angiogenin UC UC BDNF ↑ UC HGF ↓ (1.81) ↑ (7.65) NT-3 ↑ UC EGF abs abs NT-4 UC UC PIGF UC ↓ Tissue Inhibitor of Metalloproteinases Family Chemokines TIMP-1 UC UC cxcl GRO UC UC TIMP-2 UC UC CXCL1 (GROα) ↑ UC Macrophage Activating Factors CXCL5 (ENA-78) UC ↑ (1.62) INF-γ UC ↓ CXCL6 (GCP-2) UC UC MIF UC ↑ (1.97) CXCL8 (IL-8) UC ↓ (1.67) IL-2 ↑ UC CXCL9 (MIG) UC UC Bone Remodeling Cytokines CXCL10 (IP-10) UC UC Osteopontin abs abs CXCL12 (SDF-1) ↑ UC Osteoprotegerin UC UC CXCL13 (BLC) abs abs Hormones ccl CCL1 (I-309) ↑ UC Leptin ↓ (1.79) ↓ CCL2 (MCP-1) UC UC GDNF Family CCL4 (MIP1b) ↑ UC GDNF UC UC CCL5 (RANTES) ↓ (1.89) ↓ (7.85) Anti-inflammatory Interleukins CCL7 (MCP-3) UC UC IL-10 ↑ UC CACL8 (MCP-2) ↓ (3.60) ↑ IL-13 ↓ (5.47) ↓ CCL11 (Eotaxin) UC ↓ (2.39) Pro-inflammatory Interleukins* CCL17 (TARC) UC UC IL-1α ↑ (3.11) ↓ CCL18 (PARC) ↑ (3.46) ↓ IL-1β abs abs CCL20 (MIP3a) abs abs IL-5 UC ↓ (1.87) CCL24 (Eotaxin-2) ↓ ↓ IL-12 p70 ↑ UC CCL26 (Eotaxin-3) abs abs IL-15 abs abs TGF-β Family TGF-β1 ↑ (2.57) ↑ (4.94) TGF-β2 ↑ (1.61) ↓ (1.55) Paracrine TGF-β1 (3 pg/μl) DN SE DN SE Hematopoietic cytokines Insulin Like Growth Factor Superfamily G-CSF ↓ ↓ IGF-1 abs Abs M-CSF abs abs IGFBP-1 abs Abs GM-CSF ↑ (4.89) ↓ IGFBP-3 ↓ ↓ IL-6* UC UC IGFBP-4 UC ↑ IL-7 UC ↓ Tumor Necrosis Factor Superfamily LIF ↓ (2.43) UC TNF-α UC ↓ FLT3-L UC UC TNF-β ↓ ↓ SCF UC UC LIGHT ↓ ↓ IL-3 ↓ ↓ Fibroblast Growth Factor Family Onc M abs abs FGF-7 abs Abs Angiogenic cytokines FGF-9 UC UC VEGF ↓ (2.35) UC Neurotrophins Angiogenin ↓ (1.59) UC BDNF abs Abs HGF ↓ ↑ (4.16) NT-3 ↓ ↓ EGF ↓ ↓ NT-4 abs Abs PIGF ↓ ↓ Tissue Inhibitor of Metalloproteinases Family Chemokines TIMP-1 ↑ (2.26) UC cxcl GRO UC UC TIMP-2 ↑ (2.07) ↑ (1.52) CXCL1 (GROα) abs abs Macrophage Activating Factors CXCL5 (ENA-78) ↑ (1.64) UC INF-γ ↓ ↓ CXCL6 (GCP-2) ↑ (2.45) ↓ MIF ↓ (1.76) UC CXCL8 (IL-8) UC ↓ (1.57) IL-2 abs Abs CXCL9 (MIG) ↓ ↓ Bone Remodeling Cytokines CXCL10 (IP-10) ↓ ↓ Osteopontin ↓ ↓ CXCL12 (SDF-1) abs abs Osteoprotegerin UC ↓ (3.32) CXCL13 (BLC) ↓ ↓ Hormones ccl CCL1 (I-309) abs abs Leptin ↓ (1.82) ↓ (16.58) CCL2 (MCP-1) UC UC GDNF Family CCL4 (MIP1b) abs abs GDNF abs Abs CCL5 (RANTES) ↓ (3.33) ↓ (4.20) Anti-inflammatory Interleukins CCL7 (MCP-3) UC ↑ (1.78) IL-10 ↑ (5.36) ↓ CCL8 (MCP-2) ↑ UC IL-13 ↓ ↓ CCL11 (Eotaxin) UC UC Pro-inflammatory Interleukins* CCL17 (TARC) UC UC IL-1α ↓ ↓ CCL18 (PARC) ↓ ↑ (3.38) IL-1β UC UC CCL20 (MIP3a) UC UC IL-5 ↑ (5.61) ↓ CCL24 (Eotaxin-2) abs abs IL-12 p70 ↓ ↓ CCL26 (Eotaxin-3) abs abs IL-15 ↓ ↓ TGF-β Family TGF-β1 UC UC TGF-β2 UC ↓ (2.27)
[0092] The results obtained with cytokine arrays are shown in Table 2. Increase or decrease of cytokines levels are referred to the levels secreted by cells transduced with the control vector Lt.eGFP either in the presence (paracrine) or absence (autocrine) of exogenous TGF-β1. UC: unchanged levels with respect to cells transduced with the control vector Lt.eGFP. Abs: absent in mock transducer cells control. Dark grey boxes: decreased to undetected levels or absent in the supernatant of cells transduced with control vector Lt.eGFP.
[0093] Light gray boxes: cytokines present.
[0094] It is shown that in ASC cells overexpressing TβRII-DN with a high TGF-β1 concentration, OPG secretion remains unchanged with respect to the values obtained in Lt.eGFP-transduced control cells, making cells insensitive to TGF-β1.
[0095] On the other hand, high TGF-β1 concentrations caused a dramatic drop of OPG secretion in TβRII-SE overexpressing cells compared to control cells (Lt.eGFP-transduced). The TβRII-SE isoform acts oppositely to the TGF-β1 inhibitor (TβRII-DN) and seems to favor osteoclastogenesis.
[0096] Table 3 summarizes the results obtained by other authors, and those compared to the results disclosed in the present application regarding the cytokine array and the relationship with osteoarthritis (OA).
TABLE-US-00003 Results of the MSC/Osteoblasts Disease Bone/cartilage remodeling Invention High TGF-β1 OA Bone loss/increase of osteoclastic Lower OPG resorption TGF-β1 agonist Increased PTG content Higher HGF High angiogenesis TGF-β1 agonist Osteophyte outgrowth TGF-β1 inhibition OA-like Decreased osteoclastic resorption Higher OPG (TβRII-DN) Decreased PTG content/increased TGF-β1 cartilage loss antagonist Angiogenesis No HGF Decreased osteophyte formation TGF-β1 antagonist
[0097] It is shown that in cells overexpressing TβRII-SE HGF secretion is highly upregulated both in the presence (4.16 times) or absence (7.65 times) of exogenous TGF-β1, whereas in cells overexpressing the dominant negative mutant TβRII-DN, HGF secretion decreases 1.81 times or is absent, in the absence and presence of exogenous TGF-β1, respectively. These results show that the TβRII-SE isoform is involved in the positive regulation of HGF.
[0098] Increased TGF-β1 acts differently in animals depending on whether injections were applied in normal or osteoarthritic models. In normal animals, either TGF-β1 protein or adenovirus TGF-β1 injection generates increased synthesis and content of proteoglycan and osteophyte formation. On the other hand, in osteoarthritis (OA)-induced models, increases in the TGF pathway help to decrease cartilage damage, proteoglycan and osteophyte formation. Thus, the effect of the TβII-SE isoform was analyzed either in CPFX-treated juvenile rats (24 days old) or untreated rats, by intra-articular injections of lentiviral vectors encoding a recombinant protein of the codon-optimized (co) TβRII-SE fused to the constant fragment (Fc) of the human immunoglobulin 1 (IgG1) (Lt.coTβRII-SE/Fc) or the enhanced green fluorescent protein (Lt.eGFP).
[0099] Seven days after injecting the vector into rats treated with ciprofloxacin (CPFX), only articulations overexpressing the fusion peptide or a fused coTβRII-SE/Fc isoform showed radiolucent images with irregular borders in the femoral condyle, consistent with intraosteal geodes (
[0100] When compared to serum levels of urea, creatinine, total proteins, albumin, alkaline phosphatase, alanine transaminase (ALT), and aspartate transaminase (AST), a statistically significant difference was only found for the latter. An increase in aspartate transaminase (AST) was only observed in serum of rats treated with CPFX and intra-articularly injected with Lt.coT81:11I-SE (
[0101] In the present application, the generation of a new recombinant TβRII-SE protein expressed in human cells is shown. It is known that in nature, the concentration of soluble receptors is very low, thus, to increase the levels of the recombinant TβRII-SE protein, the original coding sequence was codon optimized, and a Kozak sequence was included (Epoch Biolabs Inc., Texas, USA) referred to herein as coTβRII-SE (SEQ ID No. 4) and encoded by SEQ ID No. 5 (
[0102] As can be observed,
[0103] As can be observed,
[0104] Subsequently, the recombinant coTβRII-SE/Fc cDNA was inserted between the AgeI and EcoRV sites of a SIN lentiviral vector (
[0105] To check recombinant protein production, A549 cells were transduced at an MOI=300 either with the control vector Lt.eGFP (93% of eGFP expressing cells) or Lt.coTβRII.SE/Fc (47.53% of eGFP expressing cells) and Mock transduced (
[0106] To verify the presence of human IgG1 mRNA in Lt.coTβRII-SE/Fc transduced cells, total mRNA of Mock transduced (vehicle), Lt.eGFP transduced and Lt.coTβRII-SE/Fc transduced cells was extracted and RT-PCR assays were performed using specific primers for human IgG1-Fc (
[0107] Additionally, to verify the presence of the TβRII-SE/Fc protein both in cell lysates and supernatants, total proteins from Mock, Lt.eGFP and Lt.coTβRII-SE/Fc transduced cells lysates and supernatants were western blotted (
[0108] A method to treat liver fibrosis was developed employing the lentiviral vector encoding the fusion protein TβRII-SE/Fc of the invention.
[0109] To study the effect of TβRII-SE/Fc expression on liver fibrogenesis, a rat model of carbon tetrachloride (CCL4) induced liver fibrosis was used. After animal euthanasia, liver gross appearance was evaluated macroscopically.
[0110] Effect of TβRII-SE/Fc expression on body weight and liver to body weight ratio: body weight was controlled in all rats throughout the experiment. It was observed that CCl.sub.4 treatment during eight weeks caused a growth retardation of rats, evidenced by the decrease of final body weight gain compared to rats of the vehicle group. Injection of Lv.TβRII-SE/Fc partially reversed the BW loss induced by this hepatotoxic agent. This beneficial effect was more evident after 4 weeks of CCl.sub.4 administration (
[0111] Effect of TβRII-SE/Fc expression on serum liver enzymes: to evaluate liver injury, AST and ALT serum levels were determined. As it is shown in
[0112] Effect of TβRII-SE/Fc expression on liver architecture: histological sections were stained with H&E to evaluate the general architecture of the liver. This analysis revealed that animals that received vehicle instead of CCl.sub.4, presented livers with a conserved architecture with cords of hepatocytes radiating from central veins (
[0113] Effect of TβRII-SE expression on liver fibrosis: collagen deposition was evaluated by Sirius Red staining in liver sections from different experimental group rats. CCl.sub.4 administration induced extensive deposition of collagen fibers evidenced by the observation of bridging fibrosis.
[0114] Use of the Lv.TβRII-SE/Fc vector to treat cancer: it was observed that intratumoral TβRII-SE/Fc overexpression inhibits tumor growth (
[0115] Assays were conducted to determine rheumatoid arthritis (RA) disease activity by means of measuring TβRII-SE by flow cytometry, with the TβRII-SE monoclonal antibody of the invention, conjugated with ATTO647N. The percentage of neutrophils expressing TβRII-SE (
[0116] When the percentage of neutrophils expressing TβRII-SE of each patient was correlated with its matching disease activity score (DAS28-ESR) value, it could be observed a negative correlation (Spearman's rank correlation coefficient r.sub.s=−0.69), statistically significant (p=0.0009), (
TABLE-US-00004 TABLE 4 Patient ID Number Relative TβRII-SE levels 9 16.48 10 15.98 11 20.69 12 10.26 13 5
[0118] Relative intracellular TβRII-SE protein levels in neutrophils from RA patients were correlated with their matching DAS28-ESR score (Table 5).
TABLE-US-00005 TABLE 5 Patient ID Number Relative TβRII-SE levels 9 2.76 10 3.09 11 4.22 12 4.31 13 6.24
[0119] When both sets of data were analyzed by the Spearman's Rank correlation test, a negative correlation was observed between TβRII-SE levels and DAS28-ESR (
[0120] This invention is better illustrated in the following examples, which should not be construed as limiting the scope thereof. On the contrary, it should be clearly understood that other embodiments, modifications and equivalents thereof may be possible after reading the present description, which may be suggested to a person of skill without departing from the spirit of the present invention and/or the scope of the appended claims.
EXAMPLES
Example 1
Isolation, Cloning and Sequencing of the TβRII-SE Isoform
[0121] Human adipose derived mesenchymal stromal cells (hASC) were obtained from 20 g subcutaneous fat following the protocol described by Zuk et al. (Zuk P A, et al. Mol Biol Cell 13: 4279-95, 2002) and cultured in the presence of DMEM supplemented with 10% human serum and 1% L-glutamine. Epstein Barr Virus immortalized lymphoblastoid cells were generated from peripheral blood mononuclear cells as described (Protocols in Immunology) and cultured with RPMI medium. Human A459 (lung adenocarcinoma), HT1080 (fibrosarcoma), Caco-2 (colorectal carcinoma), Hep 3B (hepatocellular carcinoma), Jurkat (acute lymphoblastoid leukemia), HEK293 (human embryonic kydney), and 293T cell lines were cultured in DMEM supplemented with 10% FCS and 1% penicillin/streptomycin. The cells were cultured in a humidified 5% CO.sub.2 incubator at 37° C.
[0122] Purification of Different Leukocyte Subpopulations
[0123] Granulocytes, lymphocytes and monocytes were isolated from heparinized peripheral blood by Ficoll-Paque™ PLUS (GE Healthcare Bio-Sciences AB) gradient centrifugation. After centrifugation two fractions were obtained, one containing granulocytes/erythrocytes and another with peripheral blood mononuclear cells (PBMC). To obtain granulocytes, erythrocytes were lysed with KCl 0.6 M. PBMCs were labelled with anti CD3.sup.+, CD14.sup.+, and CD19.sup.+ monoclonal antibodies conjugated with magnetic microbeads (Miltenyi Biotech) and separated using MS columns (Miltenyi Biotech) in a MiniMACS magnet (Miltenyi Biotech). Viable cells were determined by Trypan blue dye exclusion and counted in an hemocytometer. The purity of B- and T-lymphocyte and monocyte sub-populations was determined by flow cytometric analysis using a FACSCalibur flow cytometer (BD Biosciences). Cell sub-populations homogenized in RNA Lysis Buffer (SV Total RNA Isolation System, Promega) were stored at −80° C. until RNA extraction.
[0124] Cloning and Sequencing of PCR Fragments
[0125] TβRII PCR fragments were cloned by insertion into the pGEM-T Easy plasmid (Promega Corporation WI, USA) under the conditions established by the manufacturers and E. coli transformation.TβRII PCR fragments were sequenced by using M13 forward and direct primers in a DNA sequencer ABI 3130 (Applied Biosystems Inc, CA, USA).
Example 2
Cloning of the Codon Optimized (co) TβRII-SE/Fc Isoform Fusion Construct
[0126] The TβRII-SE coding sequence containing an AgeI site was codon optimized, the stop codon was deleted and a Kozak sequence included (Epoch Biolabs Inc. Texas, USA). The human IgG1 Fc coding sequence was obtained by RT-PCR from total blood mRNA using specific oligonucleotides as primers (forward: 5′AGA TCT GAC AAA ACT CAC ACA TGC 3′ (SEQ ID No. 8) and reverse: 5′ GAT ATC TTT ACC CGG AGA CAG G 3′ (SEQ ID No. 9)), containing a BglII site (forward primer) and EcoRV (reverse primer), to allow in frame fusion to TβRII-SE and to the lentiviral vector, respectively. The fusion construct (coTβRII-SE/Fc) of 951 bp Agel/EcoRV comprises 258 bp of the coTβRII-SE fused in frame with 693 bp of the human IgG1-Fc.
Example 3
Lentiviral Vectors
[0127] The cDNA encoding the three human TβRII isoforms were cloned into the pRRLsin18.cPPT.WPRE lentiviral vector, generating the transfer vectors pRRLsin18.cPPT.CMV-TβRII-SE.ireseGFP.WPRE, pRRLsin18.cPPT.CMV-TβRII-DN.ireseGFP.WPRE, and pRRLsin18.cPPT.CMV-coTβRII-SE/Fc.ireseGFP.WPRE. Vesicular Stomatitis Virus G protein-pseudotyped lentiviruses (VSV-G) were generated by transient transfection of the transfer vectors together with the envelope plasmid (pCMV-VSVG), the packaging plasmid (pMDLg/pRRE) and Rev plasmid (pRSV-REV), into the 293T cell line, as previously described (R. A. Dewey, et al. Experimental Hematology 34: 1163-1171, 2006). The supernatant was harvested once every 12 hours for 48 hours and frozen in aliquots. Viral titers were determined by transducing A549 cells (yielding 10.sup.7 infectious particles per milliliter). The pRRLsin18.cPPT.CMV-eGFP.WPRE lentiviral vector was used as control.
Example 4
RT-PCR and RT-qPCR
[0128] Total RNA from different primary cultures and cell lines was isolated using the Absolutely RNA kit (Stratagene, La Jolla, Calif., USA). First-strand cDNA was synthesized by mixing 1 μg of DNA free total RNA, 50 pmol primer p(DT)15 (Roche Diagnostics GmbH, Mannheim, Germany), 0.5 mM deoxyribonucleotide triphosphate, 5 mM dithiothreitol, and 1 U Expand Reverse Transcriptase (Roche Diagnostics GmbH). cDNA corresponding to different isoforms of TβRII receptor was detected by PCR amplification in the presence of Expand High Fidelity polymerase (Roche Diagnostics GmbH), 0.2 mM dNTPS, and 0.5 μM of each primer (forward: 5′ACCGGTATGGGTCGGGGGCTGCTC3′ (SEQ ID No. 10) and reverse: 5′GTCGACTCAGTAG CAGTAGAAGATG3′ (SEQ ID No. 11) for 35 cycles using the following PCR conditions: 1 min. at 95° C., 1 min. at 55° C., and 1 min. at 95° C.
[0129] Quantitative RT-PCR was performed on diluted cDNA samples with FastStart Universal SYBR Green Master (Rox) (Roche Applied Science) using the Mx3005P™ Real-Time PCR Systems (Stratagene) under universal cycling conditions (95° C. for 10 min; 40 cycles of 95° C. for 15 s; then 60° C. for 1 min). All results were normalized to GAPDH mRNA levels and further the results were analyzed using the MxPro™ QPCR computer program and Infostat statistical computer program (Di Rienzo J. A., et al. InfoStet versión 2010. Grupo InfoStat, FCA, National University of Cordoba, Argentina. URL, http://www.infostat.com.ar)
Example 5
In Vitro Bioassay for the TβRII-SE Isoform and Other Isoforms Using the MTT Proliferation Assay
[0130] A549 cells were transduced with lentiviral vectors at a multiplicity of infection (MOI) of 50 in the presence of 8 μg/ml polybrene. Percentage of eGFP positive cells was measured in a FACscalibur (Becton Dikinson) cytometer.
[0131] Cells were harvested, counted, and inoculated at the appropriate concentrations into 96-well plates using a multichannel pipette. After 24 hr, TGF-β1 (10 ng/ml and 20 ng/ml; Sigma) was added to the culture wells, and cultures were incubated for 24 hr and 48 hr at 37° C., under an atmosphere of 5% CO.sub.2. MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) (Sigma) solution at a concentration of 5 mg/ml was added to the media and the cells were further incubated for 4 hr. After replacing 100 μl of supernatant with 100 μl of DMSO, the absorbance of each well was determined at 540 nm with a SEAC (Sirio S) photometer (Italy). The percentage of cell survival was defined as the relative absorbance of treated versus untreated cells.
Example 6
Transduction and Flow Cytometry
[0132] A549 and hASC cells were transduced at an MOI of 50 and 200 respectively, with the different lentiviral constructs, in the presence of 8 μg/ml polybrene (Sigma). Forty-eight hours after transduction, cells were harvested, washed in phosphate-buffered saline (PBS) supplemented with 10% fetal calf serum and the percentage of eGFP positive cells was analyzed by flow cytometry (FACscalibur, BD)
Example 7
Protein Immunoblot (Western-Blot)
[0133] For Western blot analysis, both 20 μl and 100 μl of cell supernatant were loaded on 10% SDS-polyacrylamide gels, separated by electrophoresis and blotted onto Immovilon PVDF membranes (Millipore Corporation, Bedford, Mass., USA). The membrane was exposed to anti-TβRII monoclonal primary antibody (clone C-4) (Santa Cruz, Biotechnology) diluted 1/200, or the monoclonal antibody IM 0577 (unprotected)], capable of specifically detecting TβRII-SE, diluted 1/500. Horseradish peroxidase (HRP)-conjugated goat anti-mouse antibody (Becton Dickinson GmbH) diluted 1/10000 was used as secondary antibody. Protein detection was performed with the Amersham ECL Plus Western blotting detection reagents (Amersham Buchler GmbH, Germany) in a Typhoon 9410, Variable Mode Imager (GE Healthcare Bio-Sciences Aft Uppsala, Sweden).
Example 8
DNA and Protein Sequence Analysis
[0134] cDNA sequences belonging to the different TβRII isoforms were used and the predicted protein sequences and statistics were obtained using the EditSeq software (DNAstar, Inc. Madison, Wis., USA). Both the DNA and the predicted protein sequences belonging to the TβRII-SE cDNA were aligned to known isoforms of the human TβRII receptor (A and B) using the MegAlign software (DNASTAR, Inc. Madison, Wis., USA).
Example 9
Analysis of Cytokines and Chemokines Secreted by hASC Cells
[0135] A cytokine/chemokine array kit G5 (Ray Biotech Inc., Norcross, Ga.) was used to detect a panel of 80 secreted cytokines as recommended by the manufacturer. hASCs P7 untransduced or transduced with lentiviral vectors were grown for 72 h in a medium supplemented with 0.1% BSA. Supernatants were collected, filtered and frozen after collection. For densitometry analysis of the arrays, Typhoon 9410 Variable mode Imager (GE Healthcare Life Sciences) was used, and signal intensity values were measured using the Image analysis software ImageQuant TL 7.0 (GE Healthcare Life Sciences). Microarray data were analyzed with RayBio® Antibody Array Analysis Tool. Good data quality and adequate normalization were ensured using internal control normalization without background. Any ≥1.5-fold increase or ≤3.65-fold decrease in signal intensity for a single analyte between samples or groups may be considered a measurable and significant difference in expression, provided that both sets of signals are well above background (Mean background+3 standard deviations, accuracy≈99%).
Example 10
Generation of Monoclonal and Polyclonal Antibodies Raised Against Human TβRII-SE
[0136] Antibodies were generated by Rheabiotech, Campinas, Brazil. Immunization of both rabbit (polyclonal antibody) or mice (monoclonal antibody), was performed using a Multiple Antigene Peptide System (MAPS) with 8 identical copies of a peptide containing the 13 amino acids (FSKVHYEGKKKAW) (SEQ ID No. 12), which are only found in TβRII-SE and not in the other splicing variants of the receptor. The monoclonal antibody IM-0577 was developed in mice and purified by protein G affinity chromatography. Antibodies specificity was assayed by indirect ELISA by sensitization with antigen at a concentration of 5 μg/ml in Carbonate Buffer 0.2 M, blocked by PBS/BSA and detected with serial dilutions (1:1000-1:64000) of the specific antibody. The ELISA test was developed with a Horseradish peroxidase (HRP)-conjugated secondary antibody together with H.sub.2O.sub.2/OPD as chromogenic substrate, and detected by absorbance at 492 nM.
Example 11
In Vivo Study of Articular Cartilage Damage by Ciprofloxacin (CPFX) and the TβRII-SE Isoform
[0137] Male 24-day-old Wistar rats were housed under controlled conditions at 21±1° C. with 50%±5% relative humidity and a constant light-dark schedule (light, 8 a.m. to 8 p.m.). Food and tap water was provided ad libitum. The rats received ciprofloxacin hydrochloride on day 24 by oral administration of 200 mg/kg of body weight during 10 days. The animals were examined for clinical abnormalities including motility alterations and weighted during the treatment period.
[0138] On day 14 after ciprofloxacin treatment, 50 μl viral vectors were injected intra-articularly with either Lt.coTBRII-SE/Fc (2.35×10.sup.6 transducing Units, TU) or Lt.eGFP (6×10.sup.6 TU). Control animals without ciprofloxacin were treated in the same manner.
Example 12
Method to Treat Liver Fibrosis Using a Lentiviral Vector Encoding TβRII-SE/Fc Fusion Protein
[0139] Male Wistar rats weighting 150-200 g were housed at Mar del Plata National University Laboratory Animal Unit at a mean constant temperature of 22° C. with a 12 h light-dark cycle, and free access to standard pellet chow and water. All experiments were performed according to the ‘Guide for the Care and Use of Laboratory Animals’ and approved by the Institutional Animal Care and Use Committee (CICUAL) of Mar del Plata National University. The experimental groups were designed as follows (n=7 per group): (I) Control group received intraperitoneal (ip) injection of vehicle of CCl.sub.4; (II) CCl.sub.4 group received ip injection of CCl.sub.4; (III) Lv.TβRII-SE/Fc+CCl.sub.4 group received intrahepatic (ih) injection of Lv.TβRII-SE/Fc (week 0) before treatment with CCl.sub.4.
[0140] In Vivo Liver Transduction
[0141] Animals were ih injected with Lv.TβRII-SE/Fc (5-10×10.sup.7 transduction units/ml) a week before the induction of liver fibrosis (
[0142] Liver Fibrosis Induction
[0143] Liver fibrosis was induced by ip injection of carbon tetrachloride (CCl.sub.4) 1 ml in oil (1:1), per kg of body weight (BW), twice a week, for 8 weeks (
[0144] Body Weight Determinations
[0145] Body weight (BW) measurements were taken before each CCl.sub.4 ip injection, and after completion of the experiment. These data were used to calculate BW gain, which was expressed as the percentage (%) of increase respect to the initial BW. After euthanasia, livers were harvested and weighted to calculate the liver to body weight ratio (LW/BW), also expressed as percentage.
[0146] Biochemical Parameter Determinations
[0147] Liver enzyme levels of aspartate aminotransferase (AST), alanine aminotransferase (ALT), and alkaline phosphatase (ALP) were determine in serum with an automatic analyzer BT300 plus (Biotecnica), according to the manufacturer's recommendations.
[0148] Histological Analysis
[0149] Livers fixed in 10% neutral buffered formalin were embedded in paraffin. Liver sections (5 μm) were stained with Hematoxylin and Eosin (H&E), for liver architecture visualization. For liver fibrosis assessment, sections were stained with 0.1% Sirius Red. Quantification of Sirius Red-positive areas was performed in at least ten microscopy fields per histological section using the software ImageJ. Results were expressed as mean percentage of Sirius Red-positive area per field.
[0150] Immuhistochemichal Analysis [0151] For immunohistochemical analysis, 5 μm sections were dewaxed and rehydrated. Endogenous peroxidase activity was blocked with 3% H.sub.2O.sub.2 3% in methanol (10 min, at room temperature). Antigen retrieval was performed using the heat induced epitope retrieval (HIER) method with 0.1 M citrate buffer, pH 6. Tissue sections were then incubated for 12-16 h at 4° C. with rabbit anti-α-smooth muscle actin (anti-α-SMA, 1:500, Cell Signaling Technology, Danvers, Mass.). After two washes with PBS, slides were incubated with HiDef Detection amplifier Mouse and Rabbit (Cell Marque, Rocklin, Calif.) for 10 min, at room temperature. Sections were further washed with PBS and incubated with HiDef Detection HRP Polymer Detector (Cell Marque, Rocklin, Calif.) for 10 min, at room temperature. Finally, sections were washed twice with PBS, and immunohistochemical staining was obtained using the DAB Chromogen kit (Cell Marque, Rocklin, Calif.) by 5 min. incubation at room temperature, and counterstained with Hematoxylin. Dehydrated sections were mounted and imaged on a Nikon Eclipse E200 microscope.
[0152] Statistical Analysis
[0153] Data were analyzed using two-way ANOVA followed by the Fisher's Least Significant Difference (LSD) test. Statistical significance was set at <0.05. Results are expressed as mean±SD.
Example 13
Method to Treat Cancer with a Lentiviral Vector Encoding TβRII-SE/Fc Fusion Protein
[0154] TN60 murine mammary carcinoma cells were injected subcutaneously into syngenic C3H/S mice (N=6-7 per group), as it is described by García M. et al., 2015 Biological Rhythm Research 46: 573-578. Ten days after, 1.5×10.sup.6 transduction units of a lentiviral vectors encoding TβRII-SE/Fc (Lv.TβRII-SE/Fc) (N=7), or the control vector Lv. TβRII-DN (dominant negative) (N=6) were intratumorally injected. As an additional control, mice were intratumorally injected with the same volume of culture medium (vehicle).
[0155] Tumor diameter was determine every 2-3 days by measuring the tumor perimeter with a digital caliper, Tumor mean volume was determine by the formula V=4/3 (p×r.sup.3). Two weeks after tumor implantation, mice were euthanized by cervical dislocation.
Example 14
Method to Determine Rheumatoid Arthritis Disease Activity by TβRII-SE Protein Quantification in Neutrophils by Immune Detection with the Anti TβRII-SE Monoclonal Antibody
[0156] Patients
[0157] Volunteers and Samples [0158] Peripheral blood was collected by venipuncture from 19 RA patients diagnosed according to the ACR/EULAR 2010 criteria. All procedures were approved by CER Medical Institute Research Ethics Committee, and the Comisión Conjunta de Investigación en Salud, Department of Health, Buenos Aires Province, Argentina, registered under the number 2919/653/13. All procedures were performed after signing off a voluntary informed consent, by the donors. Exclusion criteria included severe anaemia, autoimmune diseases different from RA, any other disease/condition able to increase ESR, treatment with biological drugs, treatment with disease-modifying anti-rheumatic drugs (DMARDs) except methotrexate, and with drugs with known effect on the TGF-β signalling cascade (losartan).
[0159] Detection of TβRII-SE in neutrophils by Flow Cytometry: both neutrophils and peripheral blool mononuclear cells (PBMC) were isolated by Ficoll-Paque™ PLUS density gradient. Red blood cells were eliminated from the neutrophil fraction by incubation with a hypertonic buffer (0.15 M NH.sub.4Cl, 10 mM KHCO.sub.3, 0.1 mM EDTA). To determine the percentage of cells expressing TβRII-SE, 1×10.sup.6 of both, neutrophils and PBMC were fixed and permeabilized with the Cytofix/Cytoperm Kit (BD Biosciences, USA) Subsequently, cells were incubated with 0.5 μg of the anti-TβRII-SE monoclonal antibody of the invention conjugated with the fluorochrome ATTO 647N. Cells were resuspended in 100 μl of PBS and were analyzed by Flow Cytometry in a FACSCalibur device (BD Biosciences, USA), using Flowjo software (BD Biosciences, USA). The percentage of neutrophils expressing TβRII-SE was determined by taking as cut off the fluorescence value obtained with lymphocytes of each patient, as reference. TβRII-SE fluorescence values in neutrophils were correlated with DAS28-ESR disease activity scores by the Spearman's rank correlation test of the OriginPro 8.5.1 software (Origin Lab Corporation, Northampton, Mass., USA).
Example 15
Detection of TβRII-SE in Neutrophils by In-Cell ELISA
[0160] To develop a method to quantify intracellular TβRII-SE in leukocytes by In-cell ELISA in RA pacientes, 2.6×10.sup.6 células/cm.sup.2, in saline solution.sup.+2 (0.9% NaCl, 1 mM MgCl.sub.2, 1 mM CaCl.sub.2), were incubated in 96 well plates for 20 minutes at room temperature, to allow cell adherence to plastic. Subsequently, cells were washed twice with 1×PBS, and fixed and permeabilized with 100 μL of Fix/Perm solution (BD Cytofix/Cytoperm™, USA) for 20 min. at 4° C. After two washes with 250 μL of 1×BD Perm/Wash buffer (BD Perm/Wash™, USA), adhered cells were incubated with the anti-TβRII-SE antibody (10 μg/mL in 50 μL of BD Perm/Wash buffer) for 30 minutes to 16 hours at 4° C. As control, cells were also incubated without the above mentioned antibody. After two aditional washes with 250 μL of 1×BD Perm/Wash Buffer, cells were incuabated with 1 μg/mL secondary antibody (Anti Mouse HRP conjugated—Promega, USA), in 50 μL de 1×BD Perm/Wash Buffer, for 90 minutes. Subsequently, cells were incubated with 100 μL of quenching solution (10% V/V H.sub.2O.sub.2 in 1×BD Perm/Wash Buffer. After 3 washes with 250 μL of 1×BD Perm/Wash Buffer, cells were incubated with 100 μL of TMB substrate (Life Technologies, EEUU), in the dark, and 655 nm absorbance was determined every 5 minutes for 30 minutes, in a microplate reader (Biotek, SYNERGY™ H1, USA). In addition, the number of adhered cells was determined by cristal violet staining, to be used as In-cell ELISA normalizer. To this end, each well was washed four times with 200 μL 1×PBS and cells were incubated with 50 μl crystal violet solution containing 2 g de crystal violet (Sigma, USA), 20 ml 95% ethanol, 0.8 g amonium oxalate, and 80 ml distiled water, for 30 minutes at room temperature. After wahing the wells with abundant tap water, cells were incubated with 100 μL of 1% SDS for 60 minutes at room temperatura. Finally, absorbance at 595 nm was determined in a microplate reader (Biotek, SYNERGY™ H1, USA).
[0161] Intracellular TβRII-SE relative concentration values were determined as follows:
AbsNn=Absn.sub.655/Absn.sub.595
AbsNT=AbsT.sub.655/AbsT.sub.595
TβRII-SE relative concentration=(AbsNT−AbsNn)*100
[0162] where:
[0163] AbsNT=normalized absorbance of the well containing Anti TβRII-SE primary antibody.
[0164] AbsT.sub.655=Absorbance at 655 nm of the well containing Anti TβRII-SE primary antibody.
[0165] AbsT.sub.595=Absorbance at 595 nm of the well containing Anti TβRII-SE primary antibody.
[0166] AbsNn=normalized absorbance of the well without primary antibody (negative).
[0167] Absn.sub.655=Absorbance at 655 nm of the well without primary antibody (negative).
[0168] Absn.sub.595: Absorbance at 595 nm of the well without primary antibody (negative).
[0169] TβRII-SE relative concentration in plastic adhered leukocytes from RA patients was correlated with their matching DAS28-ESR value using the Spearman rank correlation test of the OriginPro 8.5.1 software (Origin Lab Corporation, Northampton, Mass., USA).