Peptide and pharmaceutical compositions of same for use as an antimicrobial and in cancer treatment
11365227 · 2022-06-21
Assignee
Inventors
- María Dolores Real García (Valencia, ES)
- Carolina Rausell Segarra (Valencia, ES)
- Inmaculada García Robles (Valencia, ES)
- María Benito Jardón (Valencia, ES)
- Aída Robles Fort (Valencia, ES)
Cpc classification
A61P35/00
HUMAN NECESSITIES
A61K31/513
HUMAN NECESSITIES
A61K31/513
HUMAN NECESSITIES
A61P31/00
HUMAN NECESSITIES
A61K45/06
HUMAN NECESSITIES
C07K14/4723
CHEMISTRY; METALLURGY
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
A61K31/704
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A61K31/704
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
International classification
A61P35/00
HUMAN NECESSITIES
Abstract
The present invention relates to a peptide derived from the defensin-3 from the red flour beetle Tribolium castaneum, to pharmaceutical compositions containing same, and to the use thereof as an antimicrobial in the treatment of infections caused by gram-positive bacteria, gram-negative bacteria and fungi. The invention also relates to the use of the peptide and pharmaceutical compositions containing same, in the treatment of cancer, particularly breast cancer. The compound described is a peptide derived from defensin-3 from the red flour beetle T. castaneum.
Claims
1. A peptide consisting of the sequence of SEQ ID NO: 1.
2. A pharmaceutical composition comprising the peptide according to claim 1 and at least one pharmaceutically acceptable excipient or carrier.
3. The pharmaceutical composition according to claim 2, wherein said at least one pharmaceutically acceptable excipient or carrier is selected from the group consisting of: organic nanoparticles selected from the group consisting of lipids, nanoemulsions, polymer micelles, SCK nanoparticles, liposomes, nanogels, hydrogels, lipoplexes, and polyplexes; polymers selected from the group consisting of albumin, cellulose, chitosan, alginate, gelatin, poly-c-caprolactone (PCL), hydroxyethyl starch (HES), polyglycolate (PGA), poly-(lactic-co-glycolid), polylactide (PLA), poly(d,l-lactide-co-glycolide) (PLGA), polyethyleneglycol (PEG), N-(2-hydroxypropyl) metacrylamide (PHPMA) and dextrane; dendrimers selected from the group consisting of polyether-hydroxylamine (PEHAM), polyamidoamine (PAMAM), polyesteramine, polypropyleneamine, and polyglycerol; nanofibers selected from the group consisting of carbon nanotubes, nanofibers of poly(d,l-lactide-co-glycolide) (PLGA), nanofibers of polyethyleneglycol (PEG), nanofibers of chitosan, nanofibers of poly(vinyl alcohol) (PVA), nanofibers of polylactide (PLA), nanofibers of polyethylene oxide, and nanofibers of poly-c-caprolactone (PCL); and inorganic nanoparticles selected from the group consisting of: gold nanoparticles, metal oxide nanoparticles, titanium oxide nanoparticles, platinum oxide nanoparticles, superparamagnetic iron oxide nanoparticles (SPIO-NPs), diamond-based nanoparticles, and QD nanoparticles.
4. The pharmaceutical composition according to claim 2, further comprising an antibiotic agent, a chemotherapeutic agent, or an immunotherapeutic agent.
5. The pharmaceutical composition according to claim 4, wherein said antibiotic agent is selected from the group consisting of fusidic acid, arsphenamine, clindamycin, chloramphenicol, ethambutol, fosfomycin, furazolidone, isoniazide, lincomycin, linezolid, metronidazole, mupirocin, nitrofurantoin, pirazinamide, platensimycin, quinupristin, rifampicin, tinidazole, aminoglucosides, ansamycins, carbacefem, carbapenem, cephalosporins, glycopeptides, macrolides, monobactamics, penicillins, polypeptides, quinolones, sulfonamides, and tetracyclines.
6. The pharmaceutical composition according to claim 4, wherein said chemotherapeutic agent is selected from the group consisting of anastrozole, capecitabine, carboplatin, oxaliplatin, ciclophosphamide, cisplatin, docetaxel, doxorubicin, eribulin, fulvestrant, imiquimod, letrozol, paclitaxel, romidepsin, triciribine, exemestane, 5-fluorouracil, and gemcitabine.
7. The pharmaceutical composition according to claim 4, wherein said immunotherapeutic agent is selected from the group consisting of dovitinib, ipilimumab, lapatinib, margetuximab, neratinib, nivolumab, olaparib, palbociclib, pembrolizumab, pertuzumab, ruxolitinib, trastuzumab, and veliparib.
8. A method of treating an infection caused by Gram.sup.+ bacteria, Gram.sup.− bacteria, and/or fungi, said method comprising administering to a subject in need thereof the peptide of claim 1 or a pharmaceutical composition thereof and an antibiotic agent, or administering the peptide of claim 1 or the pharmaceutical composition thereof in combination with an antibiotic.
9. The method according to claim 8, wherein said Gram+ bacterium is Staphylococcus aureus.
10. The method according to claim 8, wherein said Gram− bacterium is Escherichia coli.
11. The method according to claim 8, wherein said fungus is Candida albicans.
12. The method according to claim 8, wherein said antibiotic agent is selected from the group consisting of fusidic acid, arsphenamine, clindamycin, chloramphenicol, ethambutol, fosfomycin, furazolidone, isoniazide, lincomycin, linezolid, metronidazole, mupirocin, nitrofurantoin, pirazinamide, platensimycin, quinupristin, rifampicin, tinidazole, aminoglucosides, ansamycins, carbacefem, carbapenem, cephalosporins, glycopeptides, macrolides, monobactamics, penicillins, polypeptides, quinolones, sulfonamides, and tetracyclines.
13. A method of treating cancer, said method comprising administering a peptide consisting of the sequence of SEQ ID NO: 1 or a pharmaceutical composition containing the same to a subject in need of said treatment.
14. The method according to claim 13, wherein the cancer is selected from the group consisting of breast cancer, anti-HER2 therapy resistant breast cancer, breast carcinoma, breast adenocarcinoma, gastric carcinoma, gastric adenocarcinoma, colon carcinoma, colon adenocarcinoma, pancreatic carcinoma, pancreatic adenocarcinoma, renal cell carcinoma, clear-cell renal cell carcinoma, ovarian carcinoma, ovarian adenocarcinoma, endometrial carcinoma, uterine cervix carcinoma, pulmonary carcinoma, pulmonary adenocarcinoma, non-microcytic lung cancer, small-cell lung cancer, thyroid carcinoma, metastasic papillary thyroid carcinoma, thyroid follicular carcinoma, vesical carcinoma, transitional cell carcinoma of the bladder, prostate gland carcinoma, central nervous system glyal lineage cancer (glyoma), sarcomas, fibrosarcoma, malign fibrous histiocytoma, human Edwing's sarcoma, endometrial stroma sarcoma, osteosarcoma, rabdomiosarcoma, melanoma, embryonary cancers, neuroblastoma, medulloblastoma, retinoblastoma, nephroblastoma, hepatoblastoma, haematological cancers, B-cell leukaemia, T-cell leukaemia, non-Hodgkin's lymphoma, B-cell non-Hodgkin's lymphoma, T-cell non-Hodgkin's lymphoma, Burkitt's lymphoma, Hodgkin's lymphoma, leukaemias, B-cell lymphoma, T-cell lymphoma, and multiple myeloma.
15. The method according to claim 14, wherein the cancer is breast cancer.
16. The method according to claim 15, wherein the breast cancer is triple-negative breast cancer.
17. The method according to claim 13, wherein administering the peptide consisting of SEQ ID NO: 1 or the pharmaceutical composition thereof is in combination with a chemotherapeutic agent or wherein the pharmaceutical composition containing the peptide consisting of the sequence of SEQ ID NO: 1 further comprises a chemotherapeutic agent.
18. The method according to claim 17, wherein said chemotherapeutic agent is selected from the group consisting of anastrozole, capecitabine, carboplatin, oxaliplatin, ciclophosphamide, cisplatin, docetaxel, doxorubicin, eribulin, fulvestrant, imiquimod, letrozol, paclitaxel, romidepsin, triciribine, exemestane, 5-fluorouracil, and gemcitabine.
19. The method according to claim 13 wherein administering the peptide consisting of SEQ ID NO: 1 or the pharmaceutical composition thereof is in combination with an immunotherapeutic agent or wherein the pharmaceutical composition containing the peptide consisting of the sequence of SEQ ID NO: 1 further comprises an immunotherapeutic agent.
20. The method according to claim 19, wherein said immunotherapeutic agent is selected from the group consisting of dovitinib, ipilimumab, lapatinib, margetuximab, neratinib, nivolumab, olaparib, palbociclib, pembrolizumab, pertuzumab, ruxolitinib, trastuzumab, and veliparib.
21. The method according to claim 13, wherein administering the peptide consisting of the sequence of SEQ ID NO: 1 or the pharmaceutical composition containing the same is in combination with a radiotherapeutic treatment.
Description
BRIEF DESCRIPTION OF THE FIGURES
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DESCRIPTION OF EMBODIMENTS
(18) Materials and Methods
(19) Peptides Used
(20) The synthetic peptides used in this study were: TcDef3-pep and PaSK, fragments of the defensin 3 of T. castaneum, and the human defensin hBD-3 (PeptaNova).
(21) Bacterial Strain of Staphylococcus aureus Subsp. aureus
(22) The strain used was CECT 4013 of S. aureus subsp. aureus, publicly accessible deposited in the Spanish Type Culture Collection (CECT).
(23) Human Mammary Gland Tumour Cell Line MDA-MB-231
(24) The human mammary gland tumour cell line MDA-MB-231 was used, identified as ATCC® HTB-26™, cell line publicly accessible deposited in the American Type Culture Collection (ATCC). The cells were cultured in 75 cm.sup.2 flasks supplemented with bovine foetal serum 10%, penicillin and streptomycin 1% and fungizone 0.1%, and maintained at 37° C. in an atmosphere containing 5% CO.sub.2.
(25) Preparation of the Samples
(26) The MDA-MB-231 cells were cultured in dishes with 6 wells with a density of 5×10.sup.4 cells per well, in which 200 μL or 400 μL of PaSK were added (final concentrations 100 μg/mL and 200 μg/mL) or the same volume of the medium (solvent used to dilute the peptide) in the corresponding controls. The cells were incubated at 37° C. for 72 h.
(27) Flow Cytometry for S. aureus Cells
(28) Starting from cells of S. aureus cultured overnight in a liquid medium LB (peptone 1%, yeast extract 0.5% and NaCl 1%) at 37° C. with stirring, aliquots were obtained in a new liquid medium and allowed to grow until reaching an optical density at 600 nm (OD600) of 0.5, optimum for detection in the flow cytometer. Aliquots were prepared with a concentration of 5×10.sup.6 cfu/100 μL of S. aureus to which were added 10, 15, 20 and 25 μg/mL of PaSK, 25 μg/mL of TcDef3-pep and H.sub.2O (negative control), solvent used to dilute the peptides. The mixtures were incubated at 37° C. for 8 h and marked with the fluorochromes SYBR Green (Invitrogen) (25 μL of a SYBR Green 25× solution in H.sub.2O) that stains all the cells and propidium iodide (Sigma) (10 μL of propidium iodide 1 mg/mL) that stains dead cells. Finally, the cell death caused by the peptides was analysed by flow cytometry with the equipment BD Facs Verse (Becton Dickinson), from the cell culture and flow cytometry section of the Central Services for Research Support of the University of Valencia. The experiments were performed in duplicate.
(29) The flow cytometer forces cells to pass one by one through a needle, creating a thin line of liquid and detecting how the laser beam (argon emission laser at 488 nm, in the equipment used) interacts with the cells, depending on how the incident light is deviated and the fluorescence emitted by the excited fluorochromes. The results are presented as graphs obtained with the analysis program BD Facs suite v1.0.5.3841 (Becton Dickinson). Firstly, a control graph is obtained with the parameters FSC (Forward Scatter) and SSC (Side Scatter) to find all cellular events. These parameters provide the cell size and granularity, respectively. Then, a second graph is obtained with the parameters SSC and FITC (fluorescence parameter indicating the cells containing SYBR Green), to differentiate the cells from the other particles that may be present in the sample. Lastly, a third graph is obtained with the fluorescence parameters FITC and PerCPCy5.5 (indicating the cells stained with propidium iodide) to differentiate the cells that have been stained only by SYBR Green from those stained with propidium iodide, which will be those that have died.
(30) Flow Cytometry for Human Mammary Gland Tumour Cells MDA-MB-231
(31) To estimate cell viability, the cells of the cell line MDA-MB-231 were incubated with 0.5 μL of a 1:1000 dilution of the fluorochrome propidium iodide (PI) 1 mg/mL (Sigma-Aldrich), with which the dead cells were stained.
(32) For the cell line analysis, the CycleTEST™ PLUS DNA Reagent Kit (Sigma-Aldrich) was used. Two washes were carried out using citrate buffer (containing sodium citrate, saccharose and dimethyl sulphoxide (DMSO)), centrifuging the samples in each one at 300×g for 5 min, and one final wash was performed in which the number of cells was adjusted to 5×10.sup.5 and centrifuged at 400×g for 5 min, and then adding 250 μL of solution A (containing trypsin in a detergent buffer with spermine tetrahydrochloride), 200 μL of solution B (containing an inhibitor of trypsin and ribonuclease A, in a stabilising buffer of citrate with spermine tetrahydrochloride) and 200 μL of solution C (includes PI and the stabilising buffer with spermine tetrahydrochloride), leaving between the addition of each solution an interval of 10 min at room temperature and performing the last one, before filtering, in a cold chamber and in the dark. The analyses of cell death produced by the peptide and of the stage of cell cycle of the cells were performed with the equipment BD Facs Verse (Becton Dickinson). The cell cycle modelling was performed with the software Modfit LT, version 3.3.11. The experiments were performed in duplicate.
(33) MTS Method
(34) Cell viability was determined by the MTS method. The MDA-MB-231 cells cultured in plates with 96 wells at 37° C. in an atmosphere humidified with 10% CO.sub.2 to a density of 5×10.sup.3 cells/well were incubated with different concentrations of the peptide PaSK for 24 h. Then 20 μL were added of the solution MTS/PMS (3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyfenyl)-2-(4-sulphophenyl)-2H-tetrazole/phenazine methosulphate) to each well and after incubating for 2 h in the dark the absorbance at 490 nm was read in a plate reader. The percentage reduction in number of cells was calculated according to the formula (1−E/C)×100, where E is the absorbance of the cells treated with the peptide and C is the absorbance of the samples of the control cells.
(35) Scanning Electron Microscopy of S. aureus Cells
(36) The cells were prepared in the same way as for the flow cytometry technique and the same aliquots and treatments were performed. The samples were incubated at 37° C. for 1 h. The bacteria were fixed with Karnosky (2.5% paraformaldehyde and 0.5 glutaraldehyde) for 2 h at 4° C. After washing (centrifuging and eliminating the supernatant) they were fixed with 2% osmium tetraoxide for another 2 h, washed again and filtered with a 0.2 μm filter. The cells were then dehydrated in graded ethanol series (30°, 50°, 70°, 90°, 100°) for 10 min in each gradation. To carry out the critical point drying, the ethanol was replaced with liquid CO.sub.2, the temperature was increased to accelerate evaporation and the pressure was lowered slowly to conserve the exact shape of the bacteria. Finally, shading with gold palladium was performed for 2 min observing the results in the equipment FEG-SEM HITACHI S4800 at 10 Kv.
(37) Scanning Electron Microscopy of Human Mammary Gland Tumour Cells MDA-MB-231
(38) The MDA-MB-231 cells, control or treated with 100 μg/mL of PaSK, were prepared as indicated in the section “Preparation of the samples”. The cells were fixed with Karnosky (2.5% paraformaldehyde and 0.5% glutaraldehyde) for 2 h at 4° C. After washing (centrifuging and eliminating the supernatant) they were fixed with 2% osmium tetraoxide for another 2 h, washed again and filtered with a 0.2 μm filter. The cells were then dehydrated in graded ethanol series (30°, 50°, 70°, 90°, 100°) for 10 min in each gradation. To carry out the critical point drying, the ethanol was replaced with liquid CO.sub.2, the temperature was increased to accelerate evaporation and the pressure was lowered slowly to conserve the exact shape of the cells. Finally, shading with gold palladium was performed for 2 min observing the results in the equipment FEG-SEM HITACHI S4800 at 10 Kv.
(39) Transmission Electron Microscopy of S. aureus Cells and Human Mammary Gland Tumour Cells MDA-MB-231
(40) The samples were prepared in the same way as for scanning electron microscopy, except for the series of graded dehydration with ethanol, in which only the 90° grade was reached. Then the samples were included in resin in 4 steps: ethanol 96°—resin LR-White 2:1 (20 h), ethanol 100°—resin 2:1 (20 h), ethanol 100°—resin 1:2 (20 h) and 100% resin (24 h at 60° C.). After the samples were included in the resin the block was prepared for ultrathin cuts of 60 nm in the equipment Leica UC6 Ultracut Microtome. Finally, the cuts were contrasted with lead and the results were observed in the equipment TEM JEOL-JEM1010 at 70 kV.
Example 1. Analysis of Antimicrobial Activity of the Peptide PaSK Against S. aureus
(41) In this example the antimicrobial activity of the peptide PaSK was compared to the antimicrobial activity of the peptide TcDef3-pep. The antimicrobial activity of the peptide TcDef3-pep against S. aureus has been described in Contreras et al., 2015.
(42) The antimicrobial activity of the peptide PaSK was determined by flow cytometry. Said technique is based on light scattering by the cells and the use of fluorochromes to discriminate between live and dead cells. All cells are permeable to fluorochrome SYBR green, while only dead cells are permeable to propidium iodide, as the latter requires the bacterial membranes to be damaged in order to penetrate into the cells. Therefore, the use of these two fluorochromes provides a method for determining viable cells, quantifying the loss of cell viability from the increase in propidium iodide inside the dead cells.
(43) After incubating the cells of strain CECT 4013 of S. aureus with 25 μg/mL of the peptides TcDef3-pep and PaSK, the percentage of dead cells was determined. As a positive control, human defensin hBD-3 at the same concentration was used, which has antimicrobial activity against several types of microorganisms, including S. aureus.
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(45) The antimicrobial activity was also analysed for the peptide PaSK at lower concentrations, 10, 15 and 20 μg/mL, in the same conditions as the previous experiments.
Example 2. Effect of the Peptides TcDef3-Pep and PaSK on the Morphology of S. aureus
(46) Scanning Electron Microscopy
(47) Scanning electron microscopy provides high-resolution images used to view the damage caused by the peptides to the bacterial membrane. The cells of S. aureus CECT 4013 were treated with the peptides hBD-3, TcDef3-pep and PaSK at a concentration of 25 μg/mL, for 1 h, and analysed using scanning electron microscopy (
(48) The images obtained by scanning electron microscopy of cells treated with the peptides show formation of a biofilm in the bacteria (
(49) Transmission Electron Microscopy
(50) Transmission electron microscopy provides high-resolution images which were used to view the ultrastructural damage caused by the peptides inside the bacteria. The cells of S. aureus CECT 4013 were treated with the peptides hBD-3, TcDef3-pep and PaSK at a concentration of 25 μg/mL, for 1 h, and analysed using transmission electron microscopy (
Example 3. Analysis of Cytotoxic and Antiproliferative Activity of the Peptide PaSK
(51) The cytotoxic effect of the peptide PaSK has been studied in two cell lines of triple-negative breast cancer cells, one human (MDA-MB-231) and one mouse (4T1), and a line of normal mouse mammary epithelial cells (HC-11). To this end, a cell viability MTS assay was performed, based on the use of a compound derived from tetrazolium that is reduced in live cells to form a soluble coloured product.
(52) Various concentrations of peptide (5 μg/mL to 700 μg/mL) were tested at different times (3 h, 24 h and 48 h) and in the presence of different concentrations of bovine foetal serum in the test (0.5% and 10%), as it has been described that serum affects the activity of antimicrobial peptides. The results obtained showed that for a bovine foetal serum concentration in the test of 0.5% and 24 h incubation, the peptide PaSK presents cytotoxic activity that is dose dependent in the two cell lines of triple negative cancer cells studied, as well as in the line of normal mammary epithelial cells, causing a mortality in the cells of around 50% at concentrations of approximately 200 μM (700 μg/mL) in the three cases (
(53) A cell proliferation analysis was performed by flow cytometry for tumour cells marked with the fluorophore Oregon Green subsequently treated with a concentration of 50 μM (200 μg/mL) of the peptide PaSK or with H.sub.2O as control. This analysis allowed exploring the use of PaSK in a combined therapeutic approach. The combined use of therapeutic agents meant to inhibit tumour growth and maintenance and agents capable of stimulating the patient's immune response in the treatment of cancer is an alternative therapeutic approach to conventional approaches based only on cytotoxic agents for reducing the impact of the two main problems associated with the exclusive use of cytotoxic agents in cancer therapy: non-specific toxicity and the appearance of resistance.
(54) The reagent Oregon Green is covalently bonded to free amine groups of cells, conferring on same a homogeneous fluorescence that is distributed among the daughter cells in each cell division. As the fluorescence intensity of the cells is approximately halved with each cell division, the final fluorescence intensity after treatment with the peptide and in non-treated control cells compared to the initial fluorescence intensity of the cells provides information on how many cell division cycles have occurred in each case.
Example 4. Analysis of Cytotoxic and Antiproliferative Activity of the Peptide PaSK
(55) In this example, the cytotoxic and antiproliferative activity of the peptide PaSK is assessed by flow cytometry, performing an analysis of cell viability and an analysis of the cell cycle. After treatment of the tumour cells MDA-MB-231 with 200 μg/mL (cell viability experiments) and 100 μg/mL (analysis of cell cycle) of PaSK the percentage of viable cells was determined, as well as the stage of the cell cycle in which proliferation was stopped.
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(60) The peptide PaSK shows antiproliferative activity, as the treated cells present a statistically significant reduction in the percentage of cells in stage S and an increase in stage G1, although the latter lacks statistical significance (
Example 5. Differential Proteomic Analysis in Triple-Negative Breast Cancer Cells Treated with the Peptide PaSK
(61) A differential proteomic analysis was performed by SWATH to determine the molecular mechanisms by which the peptide exerts antiproliferative activity against triple-negative breast cancer cells MDA-MB-231 without killing the cells.
(62) Eight samples were analysed (4 replicates of the control and 4 replicates of the treatment with PaSK) identifying a total of 1,571 proteins (FDR 1%). With the quantitative data a discriminant analysis was conducted using the software Marker View 1.3, obtaining two clearly differentiated group, that of the control replicates and that of the treatment replicates (
(63) A Student's t-test (p≤0.05) was conducted for the two conditions (control and treatment) and 31 out of the 1,571 total quantified proteins (FDR 1%) were expressed differentially. Of these, 24 reduced their abundance and 7 increased in the treatment compared to the control (not shaded and shaded, respectively, in Table 1).
(64) TABLE-US-00001 TABLE 1 Protein differential expression in MDA-MB-231 cells treated and not treated with the peptide PaSK. In the treated samples, compared to the control samples, the unshaded and shaded proteins respectively reduced and increased their abundance (Student's t-test, p ≤ 0.05). T indicates treated samples, C indicates control samples. T/C change Peak name Group t-value p-value ratio sp|O43681|ASNA_HUMAN ATPase ASNA1 3.928518034 0.02483 0.21 sp|P06132|DCUP_HUMAN Uroporfphyrinogen decarboxylase 4.993985482 0.00485 0.21 sp|Q9H2U1|DHX36_HUMAN DHX36 ATP-dependent RNA 2.904876045 0.02776 0.27 helicase sp|Q6PKG0|LARP1_HUMAN La related protein 1 (LARP1) 3.781059497 0.00944 0.28 sp|Q9NR46|SHLB2_HUMAN Endophilin-B2 4.204194474 0.00903 0.29 sp|O43583|DENR_HUMAN Density regulated protein 2.881733444 0.02873 0.31 sp|P26368|U2AF2_HUMAN U2AF union factor 65 kDa subunit 2.827938614 0.03412 0.31 sp|Q9UIG0|BAZ1B_HUMAN Tyrosine-protein kinase BAZ1B 4.121548898 0.00622 0.31 sp|Q92544|TM9S4_HUMAN Member 4 of the transmembrane 9 4.361795167 0.01640 0.37 superfamily sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic 2.992215607 0.04858 0.50 subunit sp|P54819|KAD2_HUMAN Adenylate kinase 2, mitochondrial 2.880711379 0.02808 0.51 sp|P46777|RL5_HUMAN 60 S ribosomal protein L5 (RPSL5) 2.540854614 0.04416 0.60 sp|Q99961|SH3G1_HUMAN Endophilin-A2 3.829746938 0.01530 0.63 sp|P55145|MANF_HUMAN Mesencephalic astrocyte-derived 2.878103845 0.04330 0.63 neurotrophic factor sp|Q05682|CALD1_HUMAN Caldesmon 2.767832865 0.03276 0.71 sp|P67936|TPM4_HUMAN Tropomyosin alpha-4 chain 2.828936100 0.03159 0.74 sp|P37802|TAGL2_HUMAN Transgelin-2 3.767777780 0.00985 0.75 sp|P51114|FXR1_HUMAN Fragile X mental retardation protein 2.578347605 0.04190 0.76 1 sp|P62277|RS13_HUMAN 40S ribosomal protein S13 (RPS13) 2.983650325 0.02454 0.82 sp|P17812|PYRG1_HUMAN CTP synthase 1 3.226835542 0.03034 0.82 sp|Q9H3H3|CK068_HUMAN UPF0696 protein C11orf68 5.038964701 0.00243 0.83 sp|P55884|EIF3B_HUMAN Eukaryotic translation initiation 2.849369384 0.03000 0.84 factor 3B (EIF3B) sp|Q92841|DDX17_HUMAN Probable DDX17 ATP-dependent 3.097817756 0.04655 0.84 RNA helicase sp|Q01105|SET_HUMAN SET protein 2.811921013 0.04233 0.90 sp|Q9H5V8|CDCP1_HUMAN Protein 1 containing domain CUB −3.095597963 0.03259 1.22 sp|Q9Y6N5|SQRD_HUMAN Sulphide: quinone oxidoreductase −2.721378907 0.03583 1.30 (SQRDL), mitochondrial sp|000560|SDCB1_HUMAN Sintenin-1 −2.958446255 0.03792 1.43 sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin −3.383777979 0.01906 1.45 substrate 2 sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1 −2.833271929 0.03590 1.59 (TXNRD1), cytoplasmic sp|P50281|MMP14_HUMAN Matrix metalloprotease-14 −3.227397623 0.03678 1.92 sp|P07203|GPX1_HUMAN Glutathione peroxidase 1 (GPX1) −5.481709009 0.00695 5.89
(65) In addition, the differential proteins were grouped into functional clusters in Uniprot, where the clusters were shown in a descriptive manner for both proteins with reduced abundance and increased abundance in the treatment/control ratio.
(66) The results of the differential proteomic analysis confirm that the peptide PaSK acts on intracellular targets. Of the 31 proteins with statistically significant differential expression, 24 reduced their expression and 7 increased it in MDA-MB-231 cells treated with the peptide (Table 1). These are proteins with oncogenic capability, some of which have been described as being overexpressed in various types of tumour cells and which are involved, for example, in the transport of vesicles, signal transduction and apoptosis, in the alteration of metabolic pathways, DNA repair, transcription or post-transcriptional regulation and translation processes, cell adhesion and motility related to metastasis and in responses to oxidative stress.
(67) With regard to the regulation of the cell cycle, of the 24 proteins whose expression was reduced in cells treated with PaSK, the eukaryotic translation initiation factor 3B (EIF3B), the ribosomal proteins S13 and L5 (RPS13 and RPSL5, respectively) and the La related protein 1 (LARP1) stand out. EIF3 is a protein complex that organises a network of interactions between several eukarotic transduction initiation factors that are associated in subunit 40S and which participate in the various reactions involved in translation. It also has other regulatory functions, such as reinitiating the translation of polycystronic mRNA and acting as a receptor for kinase proteins controlling protein synthesis. It has been shown that the down-regulation of EIF3B expression causes cell accumulation in the stage G0/G1, significantly reducing the number of tumour cells in stage S, suggesting that EIF3B may be associated with an inhibition of DNA replication that results in a lower cell growth rate.
(68) Ribosomal proteins S13 and L5 form part of subunits 40S and 60S of the ribosome, respectively. It has been previously described that the overexpression of RPS13 in gastric cancer cells promotes growth and transition from stage G1 to stage S of the cell cycle, while when RPS13 is down regulated in said cells the number of cells stopped in stage G1 is increased. It has been described that the loss of RPL5 prevents biogenesis of ribosomes and protein synthesis. This loss does not result in a complete shutdown of the cell cycle, but strongly inhibits its progress. Therefore, the reduction of both EIF3B and RPL5 would induce a control point for the cell cycle independently of p53. These results agree with those obtained in the analysis of the antiproliferative activity of the peptide PaSK in Example 4, which showed a significant reduction in MDA-MB-231 cells in stage S (
(69) Three of the proteins with increased abundance in cells treated with the peptide PaSK are glutathione peroxidase 1 (GPX1), thioredoxin reductase 1 (TXNRD1) and sulphide:quinone oxidoreductase (SQRDL). The three proteins are involved in the response to oxidative stress and are generally overexpressed in tumour cells. Since the protection against oxidation activates survival genes and inhibits apoptosis, an overexpression of said proteins could be a response of the MDA-MB-231 cells to the anticarcinogenic activity of the peptide PaSK.
Example 6. Effect of the Peptide PaSK on the Morphology of Triple-Negative Breast Cancer Cells
(70) Both scanning electron microscopy and transmission electron microscopy provide high resolution images, which were used to view the morphological and ultrastructural changes caused by the peptide PaSK in the membrane and inside of tumour cells. The MDA-MB-231 cells were treated with the peptide PaSK at a concentration of 100 μg/mL for 72 h, and were analysed using scanning electron microscopy (
Example 7. Analysis of the Cytotoxic Effect of Combined Treatments with the Peptide PaSK and Chemotherapeutic Agents in Triple-Negative Breast Cancer Cells
(71) In this example, the MDA-MB-231 triple-negative breast cancer cells were seeded on a plate with 96 wells, with a density of 7.5×10.sup.3 cells per well and a volume of 50 μL of the medium DMEM/F-12 supplemented with bovine foetal serum 10%, and allowed to incubate for 24 h at 37° C. in an atmosphere containing 5% CO.sub.2 to promote cell adhesion. The treatments with chemotherapeutic agents or combinations with PaSK were performed on a total volume of 100 μL per well with 5% bovine foetal serum to limit the degradation of the peptide due to serum proteases. The cells were incubated at 37° C. for 72 h.
(72) For the MTS tests, 10 μL of MTS solution was added to each well and allowed to incubate for 3 h at 37° C. The absorbance at 490 nm was measured with the equipment Perkin Elmer Wallac 1420 Victor2 Microplate Reader.
(73) The differential proteomic analysis in MDA-MB-231 triple-negative breast cancer cells treated and not treated with the peptide PaSK revealed a significant reduction in the proteins UROD, ASNA1, TM9SF4 and LARP1. It has been described in the state of the art that a reduction of the expression of said proteins increases sensitivity of tumour cells to various chemotherapy agents. To determine whether PaSK sensitises MDA-MB-231 cells to chemotherapy agents, the cytotoxic effect was analysed of combined treatments of the peptide PaSK at a concentration of 100 μg/mL (at which the peptide on its own has a statistically significant cytotoxicity of 3% to 10%), with various concentrations of the chemotherapy agents doxorubicin (0.10, 0.25, 0.50, 1 and 2 μM), paclitaxel (0.0001, 0.001, 0.01, 1, 10, 100 μM), cisplatin (5, 10, 20, 30, 40, 50, 65 and 100 μM) and 5-fluorouracyl (2, 8, 20, 40, 80, 400, 1000 μM), analysing cell viability by the MTS colorimetric technique.
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SEQUENCE LISTING FREE TEXT
(82) SEQ ID NO: 1
(83) Tribolium castaneum Defensin 3; fragment PaSK
(84) SEQ ID NO: 2
(85) Tribolium castaneum Defensin 3; fragment TcDef3-pep
REFERENCES
(86) Contreras, E., Benito-Jardón, M., López-Galiano, M. J., Real, M. D. and Rausell, C. (2015). Tribolium castaneum immune defense genes are differentially expressed in response to Bacillus thuringiensis toxins sharing common receptor molecules and exhibiting disparate toxicity. Developmental and Comparative Immunology. 50, 139-145. Rajamuthiah, R. et al. (2015). A defensin from the model beetle Tribolium castaneum acts synergistically with telavacin and daptomycin against multidrug resistant Staphylococcus aureus. PLOS One. 10(6):1-14. Tonk, M. et al. (2015). Tribolium castaneum defensins are primarily active against Gram− positive bacteria. J Invertebrate Pathol. 132: 208-215.