Mass spectrometer and mass spectrometric method

Abstract

Provided is a mass spectrometer including: a measurement condition setter (42) configured to set a plurality of measurement conditions which are different from each other in terms of the set value of at least one measurement parameter; a measurement executer (43) configured to acquire a plurality of sets of mass spectrometric data respectively corresponding to the plurality of measurement conditions; a product ion extractor (44) configured to extract product ions detected with intensities exceeding a previously determined reference value; an MRM spectrum element information creator (45) configured to determine the mass-to-charge ratios and measured intensities of the extracted product ions, the mass-to-charge ratio of the precursor ion, as well as the measurement condition, and to create a plurality of pieces of MRM spectrum element information; an MRM spectrum composer (46) configured to compose an MRM spectrum from the mass-to-charge ratios and the measured intensities of the product ions included in the plurality of pieces of MRM spectrum element information; and a library data creator (47) configured to relate the MRM spectrum to information concerning the target compound to create library data for the target compound.

Claims

1. A mass spectrometer capable of performing an MS.sup.n analysis (where n is an integer equal to or greater than two) including a front mass-separating section configured to select, as a precursor ion, an ion having a predetermined mass-to-charge ratio among ions originating from a compound contained in a sample, a fragmenting section configured to fragment the precursor ion selected by the front mass-separating section to generate product ions, and a rear mass-separating section configured to perform mass separation of the product ions generated by the fragmenting section, the mass spectrometer further comprising: a measurement condition setter configured to set, in response to an input of an instruction by a user, a plurality of measurement conditions which are different from each other in terms of a set value of at least one measurement parameter that changes a form of fragmentation of the precursor ion in the fragmenting section or that changes a measurement sensitivity for the product ions; a measurement executer configured to acquire a plurality of sets of mass spectrometric data respectively corresponding to the plurality of measurement conditions, by performing a measurement of product ions using each of the plurality of measurement conditions, where the measurement includes fragmenting a precursor ion having a predetermined mass-to-charge ratio of the target compound into product ions and performing mass separation of the product ions; a product ion extractor configured to extract, from the sets of the mass spectrometric data, a plurality of product ions whose measured intensities exceed a previously determined reference value; an MRM spectrum element information creator configured to determine, for each of the plurality of extracted product ions, a mass-to-charge ratio and measured intensity of the product ion, a mass-to-charge ratio of the precursor ion which produced the product ion, as well as the measurement condition under which the measured intensity was acquired, and to create a plurality of pieces of MRM spectrum element information from the plurality of product ions and the measurement conditions respectively determined for the plurality of product ions; an MRM spectrum composer configured to compose an MRM spectrum from the mass-to-charge ratios and the measured intensities of the plurality of product ions included in the plurality of pieces of MRM spectrum element information; and a library data creator configured to relate the MRM spectrum to information concerning the target compound to create library data for the target compound.

2. The mass spectrometer according to claim 1, wherein the at least one measurement parameter includes a value of a collision energy to be imparted to a precursor ion to be introduced into the fragmenting section.

3. The mass spectrometer according to claim 1, wherein a number of pieces of the MRM spectrum element information is equal to or greater than three.

4. The mass spectrometer according to claim 1, wherein a number of pieces of the MRM spectrum element information is between six and sixteen, inclusive.

5. The mass spectrometer according to claim 1, wherein the pieces of the MRM spectrum element information are placed in order according to the measured intensity of the product ion.

6. The mass spectrometer according to claim 1, wherein: the measurement condition setter is further configured to set a number of pieces of the MRM spectrum element information according to an input of an instruction by a user; and the MRM spectrum element information creator is configured to create a same number of pieces of the MRM spectrum element information as the number set by the measurement condition setter.

7. The mass spectrometer according to claim 1, wherein: the measurement condition setter is further configured to specify an excluded ion based an input of an instruction by a user; and the product ion extractor is configured to avoid extracting the excluded ion regardless of a level of the measured intensity of the excluded ion.

8. The mass spectrometer according to claim 1, wherein: the measurement condition setter is further configured to specify a preferred ion based an input of an instruction by a user; and the product ion extractor is configured to always extract the preferred ion regardless of a level of the measured intensity of the preferred ion.

9. The mass spectrometer according to claim 1, further comprising: an analysis target compound input receiver configured to receive an input for selecting one or more compounds to be analyzed from compounds for which the library data is already prepared; a real sample measurement executer configured to perform a measurement of a real sample using a plurality of measurement conditions read from each of one or more sets of library data corresponding to the one or more compounds to be analyzed; a measured MRM spectrum creator configured to create a measured MRM spectrum from a combination of mass-to-charge ratios and measured intensities of a plurality of product ions acquired through the measurement of the real sample; and an MRM spectrum comparator configured to compare the measured MRM spectrum with an MRM spectrum included in the library data, for each of the one or more compounds to be analyzed.

10. The mass spectrometer according to claim 9, wherein: the analysis target compound input receiver is further configured to receive an input of a number of mass peaks to be used for comparison of MRM spectra for each of the one or more compounds to be analyzed; the real sample measurement executer is configured to perform the measurement of the real sample using the inputted number of measurement conditions for each of the one or more compounds to be analyzed; and the measured MRM spectrum comparator is configured to extract, from the MRM spectrum included in the library data, mass peaks corresponding to the measurement conditions used in the measurement, reconstruct the MRM spectrum from the extracted mass peaks, and compare the MRM spectrum with the measured MRM spectrum.

11. The mass spectrometer according to claim 10, wherein, when the number of mass peaks is inputted, the real sample measurement executer performs the measurement of the real sample using the inputted number of measurement conditions in descending order of measured intensity in the MRM spectrum included in the library data, for each of the one or more compounds to be analyzed.

12. A mass spectrometric method using a mass spectrometer including a front mass-separating section configured to select, as a precursor ion, an ion having a predetermined mass-to-charge ratio among ions originating from a compound contained in a sample, a fragmenting section configured to fragment the precursor ion selected by the front mass-separating section to generate product ions, and a rear mass-separating section configured to perform mass separation of the product ions generated by the fragmenting section, the method comprising: introducing a standard sample containing a known target compound into the mass spectrometer; setting a plurality of measurement conditions which are different from each other in terms of a set value of at least one measurement parameter that changes a form of fragmentation of the precursor ion in the fragmenting section or that changes a measurement sensitivity for the product ions; acquiring a plurality of sets of mass spectrometric data respectively corresponding to the plurality of measurement conditions, by performing a measurement of product ions using each of the plurality of measurement conditions, where the measurement includes fragmenting a precursor ion having a predetermined mass-to-charge ratio of the target compound into product ions and performing mass separation of the product ions; extracting, from the sets of the mass spectrometric data, a plurality of product ions detected with intensities exceeding a previously determined reference value; determining, for each of the plurality of extracted product ions, a mass-to-charge ratio and measured intensity of the product ion, a mass-to-charge ratio of the precursor ion which produced the product ion, as well as the measurement condition under which the measured intensity was acquired, and creating a plurality of pieces of MRM spectrum element information from the plurality of product ions and the measurement conditions respectively determined for the plurality of product ions; composing an MRM spectrum from the mass-to-charge ratios and the measured intensities of the plurality of product ions included in the plurality of pieces of MRM spectrum element information; and relating the MRM spectrum to information concerning the target compound to create library data for the target compound.

13. The mass spectrometry method according to claim 12, further comprising: receiving an input for selecting one or more compounds to be analyzed from compounds for which the library data is already prepared; performing a measurement of an analysis-target sample using a plurality of measurement conditions read from each of one or more sets of library data corresponding to the one or more compounds to be analyzed; creating a measured MRM spectrum from a combination of mass-to-charge ratios and measured intensities of a plurality of product ions acquired through the measurement of the analysis-target sample; and comparing the measured MRM spectrum with an MRM spectrum included in the library data, for each of the one or more compounds to be analyzed.

Description

BRIEF DESCRIPTION OF DRAWINGS

(1) FIGS. 1A-1C are diagrams illustrating an additional measurement which has been conventionally performed.

(2) FIG. 2 is a configuration diagram showing the main components of a liquid chromatograph mass spectrometer in which one embodiment of a mass spectrometer according to the present invention is coupled with a liquid chromatograph.

(3) FIG. 3 is a flowchart for creating library data for a target compound using the chromatograph mass spectrometer according to the present embodiment.

(4) FIG. 4 is an example of the method file used in the process of creating library data for a target compound by the chromatograph mass spectrometer according to the present embodiment.

(5) FIG. 5 is an example of the product-ion spectra acquired by the chromatograph mass spectrometer according to the present embodiment.

(6) FIG. 6 is an example of the peak list acquired in the chromatograph mass spectrometer according to the present embodiment.

(7) FIG. 7 is an example of the MRM spectrum element information acquired in the chromatograph mass spectrometer according to the present embodiment.

(8) FIG. 8 is an example of the standard MRM spectrum acquired in the chromatograph mass spectrometer according to the present embodiment.

(9) FIG. 9 shows MRM transitions related to compound A.

(10) FIG. 10 is a flowchart for analyzing a real sample using the chromatograph mass spectrometer according to the present embodiment.

(11) FIGS. 11A-11C illustrate a method file used in an analysis of a real sample using the chromatograph mass spectrometer according to the present embodiment.

(12) FIG. 12 is an example of the measured MRM spectrum acquired by an analysis of a real sample using the chromatograph mass spectrometer according to the present embodiment.

(13) FIG. 13 is an example of the screen display of the result of an analysis of a real sample using the chromatograph mass spectrometer according to the present embodiment.

DESCRIPTION OF EMBODIMENTS

(14) An embodiment of the mass spectrometer and mass spectrometric method according to the present invention is hereinafter described with reference to the drawings. FIG. 2 is a configuration diagram showing the main components of a liquid chromatograph mass spectrometer in which the mass spectrometer according to the present embodiment is coupled with a liquid chromatograph.

(15) The liquid chromatograph mass spectrometer according to the present embodiment is roughly divided into a liquid chromatograph unit 1, a mass spectrometry unit 2, and a control unit 4 configured to control the operations of those units. The liquid chromatograph unit 1 includes a mobile phase container 10 in which a mobile phase is stored, a pump 11 configured to draw the mobile phase and supply it at a constant flow rate, an injector 12 configured to inject a predetermined amount of sample solution into the mobile phase, and a column 13 configured to temporally separate various compounds contained in the sample solution. An autosampler 14 configured to individually introduce a plurality of liquid samples into the injector 12 is connected to the liquid chromatograph unit 1.

(16) The mass spectrometry unit 2 is configured as a multistage differential pumping system including an ionization chamber 20 maintained at substantially atmospheric pressure and an analysis chamber 23 evacuated to a high degree of vacuum by a vacuum pump (not shown), between which first and second intermediate vacuum chambers 21 and 22 are provided having their degrees of vacuum increased in a stepwise manner. The ionization chamber 20 has an electrospray ionization probe (ESI probe) 201 configured to spray a sample solution while imparting electric charges to the sample solution. The ionization chamber 20 has an electrospray ionization probe (ESI probe) 201 configured to spray a sample solution while imparting electric charges to the sample solution. The ionization chamber 20 and the first intermediate vacuum chamber 22 in the subsequent stage communicate with each other through a thin heated capillary 202. The first intermediate vacuum chamber 21 is separated from the second intermediate vacuum chamber 22 by a skimmer 212 having a small hole at its apex. Ion guides 211 and 221 configured to transport ions to the subsequent stage while converging them are respectively placed within the first and second intermediate vacuum chambers 21 and 22. The analysis chamber 23 contains a front quadrupole mass filter (Q1) 231, a collision cell 232 with a multipole ion guide (q2) 233 placed inside, a rear quadrupole mass filter (Q3) 234, and an ion detector 235 arranged in series from the upstream side (i.e., from the side facing the ionization chamber 20). Collision-induced dissociation (CID) gas, such as argon or nitrogen, is appropriately supplied into the collision cell 232 according to the measurement conditions.

(17) The mass spectrometry unit 2 is capable of various types of measurements, such as a selected ion monitoring (SIM) measurement, MS/MS scan measurement (product-ion scan measurement or precursor-ion scan measurement), or multiple reaction monitoring (MRM) measurement. In the SIM measurement, ions are detected in such a manner that no selection of ions is performed by the front quadrupole mass filter (Q1) 231 (this filter is not enabled to function as a mass filter) while the mass-to-charge ratio at which ions are allowed to pass through the rear quadrupole mass filter (Q3) is fixed.

(18) In the product-ion scan measurement, while the mass-to-charge ratio at which a precursor ion is allowed to pass through the front quadruple mass filter (Q1) 231 is fixed, the rear quadrupole mass filter (Q3) 234 is operated to continuously vary the mass-to-charge ratio at which product ions are allowed to pass through, and the product ions which have passed through the rear quadrupole mass filter (Q3) 234 are detected. In the MRM measurement, both the mass-to-charge ratio at which a precursor ion is allowed to pass through the front quadrupole mass filter (Q1) 231 and the mass-to-charge ratio at which a product ion is allowed to pass through the rear quadrupole mass filter (Q3) 234 are fixed, and the product ion which has passed through the rear quadrupole mass filter (Q3) 234 is detected. In the precursor-ion scan measurement, while the front quadrupole mass filter (Q3) 231 is operated to continuously vary the mass-to-charge ratio at which precursor ions are allowed to pass through, the mass-to-charge ratio at which a product ion is allowed to pass through the rear quadrupole mass filter (Q3) 234 is fixed, and the product ion which has passed through the rear quadrupole mass filter (Q3) 234 is detected. In any of these types of measurements, CID gas is supplied into the collision cell 232 in order to fragment the precursor ion and generate product ions.

(19) The control unit 4 has a storage section 41 and also includes, as its functional blocks, a measurement condition setter 42, standard sample measurement executer 43, product ion extractor 44, MRM spectrum element information creator 45, standard MRM spectrum composer 46, library data creator 47, analysis target compound input receiver 51, real sample measurement executer 52, measured MRM spectrum creator 53, and MRM spectrum comparator 54. The control unit 4 is actually a personal computer with a processor realizing the aforementioned functional blocks by running an MRM spectrum library creation program previously installed on the same computer. An input unit 6 and display unit 7 are connected to the control unit 4.

(20) The storage section 41 holds a compound table 411 describing items of information concerning a plurality of compounds, such as the name, chemical formula, molecular weight, and CAS Registry Number® of the compound, as well as the mass-to-charge ratio of the precursor ion and the retention time in the case of performing component separation by the column 13. A library storage area 412 is provided in the storage section 41 for storing MRM spectrum library data created through the process steps which will be described later.

(21) A procedure for an analysis using a chromatograph mass spectrometer according to the present embodiment is hereinafter described with reference to the flowchart in FIG. 3. In the chromatograph mass spectrometer according to the present embodiment, a measurement of a standard sample containing a known target compound is performed to create MRM spectrum library data related to the target compound. The MRM spectrum library data prepared for each target compound is stored and accumulated in the library storage area 412. From those MRM spectrum library data, an MRM spectrum library is formed on the library storage area 412.

(22) In response to a predetermined operation by a user, such as the execution of the MRM spectrum library creation program, the measurement condition setter 42 displays, on the display unit 7, a screen which allows the user to input information concerning the target compound. Specifically, the user is asked whether or not the target compound is already recorded in the compound table 411. If the target compound is a compound already recorded in the compound table 411, the user is prompted to select the target compound from the compound table 411. If the target compound is not recorded in the compound table 411, the measurement condition setter 42 displays a screen which allows the user to input the name, chemical formula and molecular weight of the target compound as well as the mass-to-charge ratio of the precursor ion. In the case where the user has inputted information concerning a compound which is not recorded in the compound table 411, the inputted information is added to the compound table 411. In the case where the target compound is ionized by an ESI probe 201 as in the present embodiment, the most abundantly generated ion is normally the molecular ion of the target compound. Accordingly, the value of the mass-to-charge ratio of the precursor ion may be computed from the molecular weight and automatically inputted. In the present embodiment, when the user has selected a compound recorded in the compound table 411, only the molecular ion of that compound is inputted as the precursor ion. If other types of precursor ions (e.g., adduct ion) are also recorded along with the molecular ion in the compound table 411, those ions may also be inputted as the precursor ions.

(23) After the user has inputted the information concerning the target compound by selecting a target compound from the compound table 411 or inputting the name, chemical formula and molecular weight of the target compound as well as the mass-to-charge ratio of the precursor ion (Step S1), the measurement condition setter 42 subsequently displays a screen for setting measurement conditions for the target compound. This screen shows a plurality of measurement parameters included in the measurement conditions and allows the user to select a measurement parameter for which a plurality of values should be set (Step S2). When a measurement parameter has been selected by the user, the measurement condition setter 42 displays a screen for setting the values of the measurement parameter.

(24) The following description of the present embodiment deals with an example in which the user selects the collision energy (CE) as the measurement parameter. When the collision energy is selected by the user as the measurement parameter for which a plurality of values should be set, the measurement condition setter 42 prompts the user to input the minimum value, maximum value and step width of the collision energy. For example, the following description of the present embodiment assumes that a minimum value of 10 V, maximum value of 50 V and step width of 5 V have been inputted for the collision energy. The measurement condition setter 42 sets a plurality of different values for the user-selected measurement parameter (collision energy) according the instructions inputted by the user (Step S3). Although the present description is based on the example in which the user is prompted to input the minimum value, maximum value and step width of the collision energy, a different method for setting a plurality of values may also be used; for example, the user may be prompted to directly input the values of the collision energy. The measurement parameters other than the user-selected one are given their respective initial values, to determine the setting of the plurality of measurement conditions. The measurement condition setter 42 sets a plurality of events so that a product-ion scan measurement will be performed using the determined measurement conditions sequentially (Step S4). In the present embodiment, nine events as shown in FIG. 4 are prepared. The measurement condition setter 42 further creates a method file describing those events and stores the file in the storage section 41.

(25) If a plurality of precursor ions have been inputted in Step S1, a plurality of events with the corresponding measurement conditions are set for each precursor ion, and a method file describing those events is stored. If the user has selected two or more measurement parameters, the measurement condition setter 42 determines a plurality of measurement conditions corresponding to all possible combinations of the plurality of values to be set for those measurement parameters, sets a plurality of events corresponding to those measurement conditions, and creates a method file describing those events. Examples of the measurement parameters for which a plurality of values can be set (i.e., parameters that can be selected in Step S2) other than the collision energy include the kind or pressure of the collision gas to be introduced into the collision cell 232, the value of a voltage applied to the front quadrupole mass filter (Q1) 231 or rear quadrupole mass filter (Q3) 234 (i.e., a voltage value used for sensitivity adjustment, such as the voltage applied to pre-rod electrodes).

(26) After the method file has been created, the standard sample measurement executer 43 displays a measurement-start button on the display unit 7. The user presses this button, whereupon the standard sample measurement executer 43 reads the method file from the storage section 41 and continuously introduces, from the injector 12, a predetermined amount of standard sample of the target compound which has been set beforehand in the autosampler 14. In this measurement, the column 13 functions as a simple passage which directly transports the sample to the ESI probe 201 without separating it into components.

(27) The standard sample measurement executer 43 sequentially executes the plurality of events (“events 1 to 9” in the present embodiment) described in the method file, in step with the timing at which the standard sample arrives at the ESI probe 201, and performs a measurement of the product ions. Thus, mass spectrometric data (product-ion spectrum data) is acquired for each of the events (Step S5). Each mass spectrometric data is stored in the storage section 41. In the present embodiment, data of product-ion spectra as shown in FIG. 5 is obtained.

(28) After the completion of the measurement, the product ion extractor 44 reads each product-ion spectrum data from the storage section 41 and extracts the data of the mass peaks. FIG. 6 shows a list of mass peaks extracted from the product-ion spectrum data acquired through each event (where the measured intensities are shown in arbitrary units). From this peak list, the product ion extractor 44 extracts mass peaks of product ions detected with intensities equal to or higher than a previously determined threshold (which is 100 in the present embodiment, in arbitrary units; Step S6).

(29) For each of the extracted mass peaks, the MRM spectrum element information creator 45 subsequently creates MRM spectrum element information by relating the mass-to-charge ratio of the product ion, that of the precursor ion, and the event (measurement condition) through which the product-ion spectrum data was acquired (Step S7). If there are a plurality of events in which the measured intensity of a product ion having the same mass-to-charge ratio has exceeded the threshold, only the event (measurement condition) with the highest measured intensity is included in the MRM spectrum element information. Each MRM spectrum element information is prioritized in descending order of the measured intensity of the product ion and given a serial number indicating the order of priority. FIG. 7 shows the MRM spectrum element information obtained in the present embodiment. Thus, the suitable MRM transitions for the MRM measurement of the target compound and the suitable measurement conditions for the measurement using those MRM transitions are determined.

(30) After the MRM spectrum element information has been created, the standard MRM spectrum composer 46 composes an MRM spectrum (standard MRM spectrum) from the mass-to-charge ratios and measured intensities of the product ions included in the MRM spectrum element information (Step S8). FIG. 8 shows the MRM spectrum created in the present embodiment. Unlike a normal type of product-ion spectrum acquired by a product-ion scan measurement, the MRM spectrum is a pseudo product-ion spectrum having data only at the positions of the mass peaks.

(31) After the standard MRM spectrum has been composed, the library data creator 47 reads the name, chemical formula and retention-time information of the target compound from the compound table 411, combines the read information with the standard MRM spectrum to create library data for the target compound concerned, and stores the data in the library storage area 412 (Step S9). In this process, the standard MRM spectrum is normalized so that the peak with the highest measured intensity will have a predetermined intensity value (e.g., 1000). The standard MRM spectrum includes MRM spectrum element information (an MRM transition and a measurement condition for the MRM transition) related to each peak. By performing the previously described sequence of processes for a plurality of compounds, an MRM spectrum library is created in the library storage area 412.

(32) The description thus far has been concerned with the case where a product-ion scan measurement is performed under a plurality of measurement conditions to acquire a plurality of sets of product-ion spectrum data and compose a standard MRM spectrum. If the combination of the mass-to-charge ratio of the precursor ion and that of the product ion (MRM transition) for the target compound is previously known, an MRM measurement using a plurality of measurement conditions may be performed to acquire MRM measurement data and create library data for the target compound.

(33) In normal cases, if the MRM transition of the target compound is previously known, its information is present in the compound table. Accordingly, when inputting the information of the target compound, the user is prompted to additionally specify a plurality of MRM transitions to be used in the measurement. FIG. 9 shows an example (with eight MRM transitions). Although all MRM transitions in FIG. 9 include the same precursor ion, they may include MRM transitions with different precursor ions.

(34) In the case of performing an MRM measurement, after the values of the measurement parameter(s) have been set in Step S3, a plurality of events respectively related to a plurality of measurement conditions are created for each MRM transition in Step S4. For example, if nine measurement conditions having different values of the collision energy have been inputted, a total of 72 events in which those nine measurement conditions are related to each of the eight MRM transitions are created.

(35) The mass spectrometric data acquired for each event by performing the MRM measurement (measured intensity data of the product ions) corresponds to the peak list described with reference to FIG. 6. Accordingly, MRM spectrum element information can be created by the same processing as used for the peak list in FIG. 6, and a standard MRM spectrum can be composed from the MRM spectrum element information. Furthermore, the library data for the target compound can be created by combining this standard MRM spectrum with the name, chemical formula and retention-time information of the target compound.

(36) In a conventional case, a standard synthetic product-ion spectrum which is prepared beforehand, for example, by performing a measurement of a standard sample of the target compound is used as reference information in order to avoid a false positive in the screening of the target compound. To acquire a measured synthetic product-ion spectrum which is necessary when referring to the standard synthetic product-ion spectrum, a product-ion scan measurement must be performed under a plurality of measurement conditions, so that a significant amount of time is required for one cycle of measurements.

(37) On the other hand, the MRM spectrum data included in the library data for the target compound acquired by the mass spectrometer or mass spectrometric method according to the present embodiment is a set of data having peaks in a localized form only at the positions corresponding to a plurality of specific MRM transitions. A spectrum matching using such a form of data requires the measurement to be performed only for those MRM transitions under the measurement conditions respectively related to those MRM transitions. This eliminates the necessity of performing a time-consuming product-ion scan measurement as in the conventional method, so that the screening of the target compound can be performed with a shorter loop time.

(38) Next, the procedure for screening a target compound contained in a real sample using an MRM spectrum library created by the mass spectrometric method and mass spectrometer according to the present embodiment is described with reference to the flowchart in FIG. 10.

(39) The user gives a command to initiate an analysis of a real sample, whereupon the analysis target compound input receiver 51 displays, on the display unit 7, a list of the compounds recorded in the MRM spectrum library stored in the library storage area 412, and prompts the used to select the target compound to be analyzed. The number of target compounds to be selected may be one or more. In selecting the target compounds, the user may specify the number of mass peaks to be used for the spectrum matching.

(40) After the target compounds (compounds A, B, C, D, . . . and X) have been selected by the user (Step S11), the real sample measurement executer 52 reads, from the MRM spectrum library, the retention time of each inputted compound as well as a plurality of MRM transitions related to the compound and the measurement condition of each MRM transition, to create a method file describing the read items of information (Step S12). As shown in FIGS. 11A and 11B, this method file describes one event for each compound and one channel for each of the MRM transitions of each compound. If the number of MRM transitions has been specified by the user in Step S11, the specified number of pieces of MRM spectrum element information are read in ascending order of their serial numbers (i.e., in descending order of the measured intensity in the standard MRM spectrum) from the MRM spectrum element information stored in the MRM spectrum library, and the channels for performing measurements of the MRM transitions corresponding to the read information are set.

(41) As shown in FIGS. 11A-11C, the method file describes one event for each compound along with the execution period of the event (i.e., the period of time corresponding to the retention time of each compound). The configuration of the events is displayed on the display unit 7. When one event (compound) is selected on the event list displayed as shown in FIG. 11A, the channels which have been set for the event are listed as shown in FIG. 11B. One channel is provided for each MRM transition, and each channel is related to a measurement condition including an optimum value of the collision energy (which yields the highest measurement sensitivity) for the channel. Thus, the same number (100) of events as the target compounds inputted by the user are set in the method file, and each event is related to a set of channels whose number is equal to either the number of pieces of the MRM spectrum element information recorded in the MRM spectrum library for the compound corresponding to the event, or the number specified by the user (the number of mass peaks to be used for the spectrum matching).

(42) When a user has given a command to initiate the measurement, the real sample measurement executer 52 injects, into the injector 12, a real sample which has been set in the autosampler 14 beforehand. The various components contained in the real sample introduced into the injector 12 are separated from each other by the column 13 and sequentially introduced into the ESI probe 201. Each component introduced into the ESI probe 201 is sprayed into and ionized within the ionization chamber 20. The resulting ions are introduced into the mass spectrometry unit 2 in the subsequent stage.

(43) This measurement is performed according to the measurement conditions described in the method file, in which each of the compounds is sequentially subjected to the measurement using the plurality of channels (MRM transitions) defined in the event which is set for the compound concerned (Step S13). Within a period of time in which there are two or more events whose execution periods overlap each other, the plurality of channels defined in those events are sequentially and repeatedly executed. For example, in the case of the method file shown in FIGS. 11A-11C, the intensities of the product ions are repeatedly measured using the MRM transitions (channels 1-8) specified for compound A (event 1) as well as the MRM transitions (channels 1-15) specified for compound B (event 2) from the beginning of the measurement until three minutes have elapsed. During a period of 3 to 4 minutes after the beginning of the measurement, the intensities of the product ions are repeatedly measured using the MRM transitions specified for compounds A, B and C (FIG. 11C). The same also applies in the subsequent periods of time.

(44) The measurement data acquired in this manner is sequentially stored in the storage section 41. It should be noted that the real sample measurement executer 52 additionally measures the intensities of the product ions a plurality of times using the MRM transition of each channel before and/or after the period of time specified as the measurement time of each event. The data additionally acquired outside the measurement time of each event are separately stored in the storage section 41 apart from the data acquired within the measurement time of the event.

(45) After the completion of the measurement, the measured MRM spectrum creator 53 creates a measured MRM spectrum in which the intensities of the product ions measured within the measurement time through the channels in each event are shown as mass peaks (Step S14). Furthermore, the measured MRM spectrum creator 53 performs a subtracting operation in which the intensity of each product ion measured outside the execution time through the same channel in the same event (this intensity corresponds to the measurement noise) is subtracted from the measured intensity in the measured MRM spectrum, to create a measured MRM spectrum with the measurement noise removed (Step S15).

(46) FIG. 12 shows an example of the measured MRM spectrum for compound A created in this manner. This spectrum has eight mass peaks which respectively correspond to the eight MRM transitions (channels) specified for compound A. Thus, the chromatograph mass spectrometer according to the present embodiment obtains a pseudo product-ion spectrum by performing a measurement using a plurality of MRM transitions. In the multi-measured MRM spectrum in the present embodiment, mass peaks of the product ions derived from different precursor ions are displayed as a single pseudo product-ion spectrum.

(47) After the measured MRM spectra for all target compounds have been acquired, the MRM spectrum comparator 54 reads the MRM spectrum (standard MRM spectrum) of each compound from the MRM spectrum library and determines their degree of similarity. For the calculation of the degree of similarity, the measured MRM spectrum is initially normalized. This normalization is performed by the same method as used for the normalization of the MRM spectra stored in the MRM spectrum library. In the present embodiment, the normalization is performed so that the highest mass peak in the measured MRM spectrum has a predetermined intensity value (1000). After the normalization of the measured MRM spectrum, the measured intensities of the mass peaks are compared with those of the corresponding mass peaks of the standard MRM spectrum, and the degree of similarity is determined based on their differences (spectrum matching; Step S16). Although the degree of similarity between the measured and standard MRM spectra is calculated in the present example, the task of comparing those MRM spectra can be performed in various forms, such as the creation of a table comparing the mass-to-charge ratios and intensities of the mass peaks included in both spectra. If the number of mass peaks to be used for the spectrum matching has been specified by the user, the MRM spectrum comparator 54 extracts, from the standard MRM spectrum in the library data, the mass peaks corresponding to the measurement conditions used in the measurement by the real sample measurement executer 52, reconstructs the MRM spectrum from the extracted mass peaks, and compares it with the measured MRM spectrum.

(48) The calculation of the degree of similarity of the MRM spectra has been completed for all target compounds, the MRM spectrum comparator 54 displays, on the display unit 7, the degree of similarity of each target compound along with the measured and standard MRM spectra (Step S17). FIG. 13 is an example of the display screen. Displaying the measured and standard spectra along with the degree of similarity in this manner allows the user to intuitively understand whether or not the component in the sample is the target compound, based on not only the numerical value of the degree of similarity but also the visual recognition of the entire form or other features of the MRM spectra. The tabs in the upper portion of the screen in FIG. 13 allow the display to be switched to the result of another compound.

(49) The previously described embodiment is a mere example of the present invention and can be appropriately changed in line with the spirit of the present invention. In the previous embodiment, all product ions whose measured intensities exceed the threshold are extracted for the standard sample. This may be modified so that the measurement condition setter 42 in setting the measurement conditions allows the user to input the number of pieces of the MRM spectrum element information for composing an MRM spectrum, and creates the inputted number of pieces of the MRM spectrum element information in descending order of the measured intensity of the product ions. The number of pieces of the MRM spectrum element information, or the number of peaks of the MRM spectrum, should be at least three, and more preferably, between six and sixteen, inclusive. Although the number of pieces of the MRM spectrum element information depends on the molecular weight, molecular structure and other features of the target compound, selecting a number within the aforementioned range enables the screening to be performed using a sufficient number of product ions characteristic of the target compound for comparison with the measured data. It also allows the dwell time to be long enough without causing the cycle time in the actual measurement to be excessively long.

(50) In order that product ions which have high measured intensities yet are not characteristic of the compound concerned will be excluded from the MRM spectrum element information, the user may be allowed to additionally set mass-to-charge ratios of such product ions (excluded ions) when inputting information concerning the target compound in the process of setting the measurement conditions by the measurement condition setter 42, and the product ion extractor 44 may be configured to avoid extracting the excluded ions regardless of the levels of their measured intensities. Furthermore, in order that product ions which have rather low measured intensities yet are characteristic of the compound concerned can be preferentially included in the MRM spectrum element information, the user may be allowed to additionally set mass-to-charge ratios of such product ions (preferred ions) when inputting information concerning the target compound in the process of setting the measurement conditions by the measurement condition setter 42, and the product ion extractor 44 may be configured to always extract the preferred ions regardless of the levels of their measured intensities.

(51) Although a liquid chromatograph mass spectrometer was presented as an example in the previous embodiment, it is not always necessary to use a liquid chromatograph for the creation of the library data; the standard sample may be directly introduced into the ion source of the mass spectrometer. A gas chromatograph may be used in place of the liquid chromatograph. Furthermore, although a triple quadrupole mass spectrometer is presented as an example in the previous embodiment, it is also possible to use a mass spectrometer having a different configuration including a front mass-separating section, fragmenting section and rear mass-separating section.

REFERENCE SIGNS LIST

(52) 1 . . . Liquid Chromatograph Unit 12 . . . Injector 13 . . . Column 14 . . . Autosampler 2 . . . Mass Spectrometry Unit 20 . . . Ionization Chamber 201 . . . ESI Probe 21 . . . First Intermediate Vacuum Chamber 22 . . . Second Intermediate Vacuum Chamber 23 . . . Analysis Chamber 231 . . . Front Quadrupole Mass Filter 232 . . . Collision Cell 234 . . . Rear Quadrupole Mass Filter 235 . . . Ion Detector 4 . . . Control Unit 41 . . . Storage Section 411 . . . Compound Table 412 . . . Library Storage Area 42 . . . Measurement Condition Setter 43 . . . Standard Sample Measurement Executer 44 . . . Product Ion Extractor 45 . . . MRM Spectrum Element Information Creator 46 . . . Standard MRM Spectrum Composer 47 . . . Library Data Creator 51 . . . Analysis Target Compound Input Receiver 52 . . . Real Sample Measurement Executer 53 . . . Measured MRM Spectrum Creator 54 . . . MRM Spectrum Comparator 6 . . . Input Unit 7 . . . Display Unit