METHODS AND APPARATUS FOR DETECTING MOLECULES
20230273198 · 2023-08-31
Inventors
- Wei JI (Guangzhou, Guangdong, CN)
- Lusheng GU (Guangzhou, Guangdong, CN)
- Tao XU (Guangzhou, Guangdong, CN)
Cpc classification
G01N33/54313
PHYSICS
International classification
Abstract
The present invention provides a method and an apparatus for detecting molecules. The method for detecting a signal molecule comprises the following steps: (1) providing a solution comprising microparticles, wherein the microparticles comprise microparticles binding to the signal molecule to be detected; (2) applying the microparticles in the solution to the surface and/or the interior of a solid phase support; (3) counting the microparticles in a selected field of view under a bright field; (4) counting the microparticles binding to the signal molecule in a selected field of view under a dark field; and (5) determining the concentration of the signal molecule according to the counting results obtained in step (3) and step (4). On this basis, the present invention also provides a method and an apparatus for detecting a target molecule. The methods and apparatus provided by the present invention can realize a rapid, simple and convenient detection of molecules, especially biomolecules, which are of low cost, and facilitate promotion in multiple fields including scientific research, clinical diagnosis, and epidemic prevention.
Claims
1. A method for detecting a signal molecule, comprising the following steps of: (1) providing a solution comprising microparticles, wherein the microparticles comprise microparticles binding to the signal molecule to be detected; (2) immobilizing the microparticles in the solution to the surface and/or the interior of a solid phase support; (3) counting the microparticles in a selected field of view under a bright field; and (4) counting the microparticles binding to the signal molecule in a selected field of view under a dark field; and (5) determining the concentration of the signal molecule according to the counting results obtained in steps (3) and (4); wherein step (3) comprises removing the agglomerated/overlapped microparticles in the bright field.
2. A method for detecting one or more target molecules, comprising the following steps of: (1) providing a solution comprising microparticles, wherein a target molecule forms a complex by a specific binding reaction, the microparticles is linked to the complex, and the complex is labeled with a signal molecule; (2) immobilizing the microparticles in the solution to the surface and/or the interior of a solid phase support; (3) counting the microparticles in a selected field of view under a bright field; (4) counting the microparticles binding to the complex in a selected field of view under a dark field; and (5) determining the concentration of the signal molecule according to the counting results obtained in steps (3) and (4), and further determining the concentration of the target molecule; wherein step (3) comprises removing the agglomerated/overlapped microparticles in the bright field.
3. The method according to claim 2, wherein in step (2), the solid phase support does not need to be spatially divided to achieve a random distribution.
4. The method according to claim 2, wherein an uncertain quantity of microparticles are immobilized to the surface and/or the interior of the solid support.
5. The method according to claim 2, wherein the target molecule is one or more selected from the group consisting of a protein, a polypeptide, an amino acid, an antigen, a receptor, a ligand, and a nucleic acid.
6. The method according to claim 2, wherein the target molecule is an antibody.
7. The method according to claim 2, wherein the specific binding reaction is one or more selected from the group consiting of an immune reaction, a hybridization reaction, and a receptor-ligand interaction.
8. The method according to claim 2, wherein the microparticles are magnetic microparticles.
9. The method according to claim 8, wherein the magnetic microparticles are magnetic beads have a particle size ranging from 600 nm to 10 .Math.m.
10. (canceled)
11. (canceled)
12. The method according to claim 2, wherein the signal molecule is one or more selected from the group consiting of a chromophore, a digoxin-labeled probe, a metal nanoparticle, and an enzyme or form the group consiting of an organic small molecule fluorescent probe, a quantum dot, a fluorescent bead, a three-dimensional DNA nanostructure reporter probe, an upconversion luminescent nanomaterial bead, a rolling circle amplification fluorescent molecule amplification structure, and a nucleic acid aptamer fluorescent molecule amplification structure.
13. (canceled)
14. The method according to claim 2, wherein the signal molecule is a quantum dot bead.
15. (canceled)
16. The method according to claim 2, wherein in step (2), the microparticles are immobilized to the surface and/or the interior of the solid phase support by an applied magnetic field and/or an electric field and/or a gel.
17. The method according to claim 2, wherein the solid phase support is selected from a multi-well plate, a flat plate or a flow channel.
18. The method according to claim 2, wherein the coordinates of the microparticles in the image are determined by bright field microscopic imaging.
19. The method according to claim 18, wherein the coordinates of the microparticles are determined from the difference in brightness of the microparticles, wherein the difference in brightness of the microparticles is the brightness difference of the microparticles themselves.
20. (canceled)
21. The method according to claim 18, wherein the counting in step (4) is determined by the coordinates of the microparticles in the image.
22. The method according to claim 1, wherein the method for determining the concentration of the target molecule in step (5) comprises: determining the concentration of the target molecule according to a proportional relation between the numbers of the microparticles obtained in step (3) and step (4) in combination with a standard curve.
23. The method according to claim 2, wherein the method for determining the concentration of the target molecule in step (5) comprises: determining the concentration of the target molecule according to a proportional relation between the numbers of the microparticles obtained in step (3) and step (4) in combination with a standard curve.
24. Use of the method according to claim 2 in the preparation of a diagnostic reagent for detecting a biomolecule.
25. A detection apparatus for implementing the method according to claim 2, comprising: a solid phase support capable of immobilizing microparticles, the microparticles comprising microparticles binding to a signal molecule to be detected and being dispersed at the surface and/or in the interior of the solid phase support; at least one first light source irradiating microparticles within a selected field of view of the solid phase support to form bright field signals related to the total number of microparticles, and at least one second light source irradiating microparticles within a selected field of view of the solid phase support to form dark field signals related to the total number of microparticles binding to the signal molecule to be detected; a signal acquisition unit for acquiring the bright field signals and dark field signals; and a signal processing unit for determining the concentration of the signal molecule according to the acquired bright field signals and dark field signals.
26. The apparatus according to claim 25, wherein the signal acquisition unit comprises an amplification assembly for amplifying microparticles within the selected field of view.
27. The apparatus according to claim 26, wherein the amplification assembly is an objective lens.
28. (canceled)
29. Apparatus according to claim 25, wherein the solid phase support is at least a partially optically transparent support.
30. The apparatus according to claim 29, wherein the solid phase support is removably disposed above or below the signal acquisition unit.
31. (canceled)
32. The apparatus of claim 25, wherein the solid phase support comprises at least one flow channel comprising an inlet and an outlet, and a solution comprising the microparticles is dispersed within the flow channel.
33. The apparatus of claim 25, wherein the solid phase support is a multi-well plate or a flat plate.
34. The apparatus according to claim 25, wherein the apparatus further comprises a magnetic field generating device or an electric field generating device for immobilizing and dispersing the microparticles at the surface and/or in the interior of the solid phase support.
35. The apparatus according to claim 25, wherein the solid phase support is a turntable which can rotate relative to the signal acquisition unit, wherein the turntable comprises at least one optically transparent detection site which is detected by the signal acquisition unit when the detection site is located in an optical path of the signal acquisition unit, wherein the turntable is configured to rotate sequentially between a plurality of stations in a stepwise manner and to perform the following operations on a solution to be detected at the detection site at the plurality of stations: immobilizing and rinsing microparticles in the solution, wherein the plurality of stations comprise a detection station located in an optical path of the signal acquisition unit, at least one pre-treatment station located upstream of the detection station, and at least one post-treatment station located downstream of the detection station, wherein an operation of immobilizing and dispersing microparticles in the solution is performed at the pre-treatment station, and a rinsing operation is performed at the post-treatment station.
36. (canceled)
37. (canceled)
38. The apparatus according to claim 25, wherein the signal acquisition unit comprises at least one photographing assembly.
39. The apparatus according to claim 25, wherein the apparatus further comprises a displacement mechanism for actuating the signal acquisition unit/solid phase support.
40. (canceled)
41. A non-transient computer-readable storage medium for storing a program for executing the method according to claim 2 and/or data generated by programs for executing the method and data enerated by executing the method.
42. An electronic device comprising the non-transient computer-readable storage medium according to claim 41.
43. Use of the method according to claim 1 in the preparation of a diagnostic reagent for detecting a biomolecule.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0144] The embodiments of the present invention will be described in detail in connection with the drawings, in which:
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[0156] whrerein 1-position 1; 2-position 2; 3-position 3; 4-position 4; 5-position 5; 6-position 6; 7-position 7; 8-position 8; 201-turntable; 202-blind hole; 203- rotary shaft; 301-magnetic bead solution; 302-blind hole containing a solution of magnetic beads to be detected; 303-bright field light source; 304-condenser lens; 305-objective lens; 306-fluorescent light source; 307-lens; 308-dichroic beamsplitter; 309-filter; 310-lens; 311-camera.
BEST MODES FOR CARRYING OUT THE INVENTION
[0157] The present invention will be further described in detail below in connection with the specific examples. The examples given are only for the purpose of illustrating the present invention, but not intended to limit the scope of the present invention.
Detection Apparatus
[0158] Referring to
[0163] In the apparatus for detecting a target molecule of the present invention, the solid phase support is a turntable 201 capable of rotating with respect to the signal acquisition unit as shown in
[0164] The material of the turntable 201 may be quartz or glass. The turntable 201 comprises at least one optically transparent detection site which is detected by the signal acquisition unit when the detection site is located in an optical path of the signal acquisition unit. As shown in
[0165] The turntable 201 as a solid phase support can rotate in a plane above the signal acquisition unit.
[0166] The apparatus for detecting molecules further comprises a magnetic field generating device or an electric field generating device (not shown) for immobilizing and dispersing the microparticles at the surface and/or in the interior of the solid phase support.
[0167] In a preferred embodiment, the microparticles are magnetic beads which are one or more selected from the group consiting of paramagnetic beads and superparamagnetic beads. The magnetic beads have a particle size ranging from 600 nm to 10 .Math.m.
[0168] The apparatus of the present invention further comprises a displacement mechanism (not shown) for actuating the signal acquisition unit and/or the solid phase support, wherein the displacement mechanism is preferably one or more selected from the group consisting of a one-dimensional displacement stage, a two-dimensional displacement stage, and a three-dimensional displacement stage; for example, the displacement mechanism may be a two-dimensional displacement stage to allow bright field and dark field microscopic imaging of individual microparticles to be acquired in a planar motion manner while the individual microparticles are dispersed on the surface of the solid phase support.
[0169] Referring to
[0170] It should be noted that: [0171] (1) when the microparticles are immobilized with agar, after the sample is loaded and moved from position 5 to position 4 for adding agar, the blind hole at position 6 is moved to position 5 to start loading the next sample, and so on, to ensure that each blind hole moves to this position to load a sample to realize a cyclical detection with a high-efficiency; [0172] (2) in addition to immobilizing the microparticles using agar, the microparticles solution 301 with the immunocomplex comprising a signal molecule after the reaction may be pipetted onto a transparent flat solid phase support (quartz, glass, etc.), or a transparent porous solid phase support, and then the microparticles may be plated closely on the solid phase support using a magnet, gravity, or magnetic field directly. Preferably, the solvent of the microparticles solution 301 is removed, and the microparticles are then detected directly by a two-dimensional distribution; and [0173] (3) when the biomolecule is a nucleic acid, it can also be analyzed using the same analysis apparatus with the same apparatus configuration.
Example 1 Screening of Magnetic Beads
[0174] Solutions of magnetic beads with different particle sizes (500 nm, 1 .Math.m, 2 .Math.m, 3 .Math.m) were provided. The above solutions of magnetic beads with the four particle sizes were randomly distributed on glass slides, and observed and photographed under a microscope, and the results are shown in
[0175] As can be seen from
[0176] The magnetic beads with a particle size of 1 .Math.m and 2 .Math.m shown in
Example 2 Detection of Different Concentrations of Biotin-Qbeads By Streptavidin-Modified Magnetic Beads
1. Experimental Components
[0177] Streptavidin-modified magnetic beads, biotin-modified quantum dot beads (Biotin-Qbeads), Buffer A (2% BSA in 10 mM PBS, pH 7.4), Buffer B (0.5% Tween 20 in 10 mM PBS, pH 7.4).
2. Experimental Method
[0178] Biotin-Qbeads were diluted to 0, 0.05, 0.25, 0.5, 2.5, 5, 25, 50 fM with Buffer A. Streptavidin-modified beads were diluted to 2 × 10.sup.7/mL.
[0179] 10 .Math.L of diluted biotin-Qbeads with different concentrations, 10 .Math.L of diluted streptavidin-modified magnetic beads and 80 .Math.L of Buffer A were mixed by vortexing, and reacted for 1 h at 37° C.
[0180] The supernatant was removed by rinsing six times with Buffer B.
[0181] The magnetic beads were resuspended in 20 .Math.L of PBS, and 5 .Math.L of suspension was transferred to a coverslip. The magnetic beads were attached to the bottom of the coverslip using a magnet, and single molecule imaging was performed using a fluorescence microscope.
[0182] The magnetic beads distributed on the bottom surface of the glass were imaged under a bright field and a fluorescence imaging mode respectively using a low-power objective lens to obtain two sets of data of bright field and the fluorescence. A concentration of antigen could be determined by the ratio of the number of magnetic beads containing the immune complex (i.e., the number of active beads) to the total number of magnetic beads.
[0183] Measurements were performed on a series of different concentrations, with each concentration point being repeated three times.
3. Experimental Results
[0184] The experimental results are shown in
Example 3 Detection of Purified Spike Protein of Novel Coronavirus
1. Experimental Components
[0185] Carboxyl-modified magnetic beads, capture antibody (SinoBiological 40150-D006), detection antibody (SinoBiological 40591-MM43), streptavidin-modified quantum dot beads, Spike protein (RBD, SinoBiological), N-hydroxysulfosuccinimide (S-NHS), 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC), PBS buffer, Buffer A (0.1% Tween 20 in 10 mM PBS, pH 7.4), Buffer B (2% BSA in 10 mM PBS, pH 7.4), Buffer C (0.5% Tween 20 in 10 mM PBS, pH 7.4), MES, Tris-HCI, NaOH, EZ-LinkNHS-PEG 4-Biotinylation Kit, and desalting column (Zeba™ Spin Desalting Columns).
2. Preparation Mthod
2.1 Covalent Coupling of Magnetic Beads With a Capture Antibody
[0186] 20 uL of the magnetic bead suspension was taken into a 1.5 mL EP tube, the EP tube was placed in a magnetic separation rack for enriching the magnetic beads, and the supernatant was removed.
[0187] 0.5 mL of H.sub.2O was taken into a centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, the EP tube was placed in the magnetic separation rack for enriching the magnetic beads, and the supernatant was removed.
[0188] 0.5 mL of NaOH was added into the centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, the EP tube was placed in the magnetic separation rack for enriching the magnetic beads, and the supernatant was removed. This procedure was repeated twice.
[0189] 0.5 mL of H.sub.2O was added into the centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, the EP tube was placed in a magnetic separation rack for enriching the magnetic beads, and the supernatant was removed. This procedure was repeated once.
[0190] 0.5 mL of MES (pH 5.0) was added into the centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, the EP tube was placed in a magnetic separation rack for enriching the magnetic beads, and the supernatant was removed. This procedure was repeated once.
[0191] 0.1 mL MES (pH 5.0) was added into the centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, then 0.1 mL 100 mg/ml EDC and 50 mg/ml S-NHS were added, and the mixture was vortexed for 15 s. The EP tube was placed in a horizontal shaker, and the mixture was reacted for 40 min at room temperature. The EP tube was placed in the magnetic separation rack for enriching magnetic beads, and the supernatant was removed.
[0192] 0.5 mL of MES (pH 5.0) was added in the centrifuge tube, the magnetic beads were mixed uniformly by vortexing for 15 s, the EP tube was placed in the magnetic separation rack for enriching the magnetic beads, and the supernatant was removed. This procedure was repeated once. The beads were resuspended by adding 0.1 mL of MES (pH 5.0), and the mixture was vortexed for 15 s.
[0193] 88 .Math.g of capture antibody (40150-D006) was diluted with 0.1 mL of MES (pH 5.0) and added to the magnetic bead suspension, and the mixture was vortexed for 15 s. The EP tube was placed in a horizontal shaker, and the mixture was reacted for 1 h at room temperature.
[0194] The EP tube was placed in the magnetic separation rack for enriching magnetic beads, and the supernatant was removed. The beads were resuspended by adding 0.4 mL of Tris-HCl (pH 7.4), and the mixture was vortexed for 15 s; the EP tube was placed in the horizontal shaker, and the mixture was reacted for 1 h at room temperature.
[0195] The EP tube was placed in the magnetic separation rack for enriching magnetic beads, and the supernatant was removed. 0.5 mL of Buffer A was added, and the mixture was vortexed for 15 s to uniformly mix the magnetic beads; the EP tube was placed in the magnetic separation rack for enriching the magnetic beads, and the supernatant was emoved. This procedure was repeated twice.
[0196] 0.5 mL of PBS was added and the mixture was vortexed for 15 s for uniformly mixing the magnetic beads, the EP tube was placed in the magnetic separation rack for enriching the magnetic beads, and the supernatant was removed.
[0197] 0.15 mL of Buffer B was added, the mixture was vortexed for 15 s for uniformly mixing the beads and stored at 4° C.
2.2 Biotinylation Modification of Detection Antibody
[0198] 1 mg of detection antibody was diluted with 1 mL of 10 mM PBS to a concentration of 1 mg/mL, and was stored at 4° C. for later use.
[0199] One tube of NHS-PEG4-Biotin packed in the kit was dissolved by adding 0.17 mL of ultrapure water to obtain an NHS-PEG 4-Biotin solution with a concentration of 20 .Math.M.
[0200] 6.65.Math.L of NHS-PEG4-Biotin solution was added to the detection antibody solution, and the mixture was reacted for 1 h at room temperature.
[0201] Buffer was displaced using a desalting column (Zeba™ Spin Desalting Columns), and excess NHS-PEG 4-Biotin solution was removed from the system at the same time.
[0202] The concentration of biotinylated detection antibody was determined using Nanodrop, and the mixtuer was stored at 4° C.
3. Experimental Method
[0203] The Spike protein was diluted to concentrations of 0, 0.01, 0.1, 1, 10 and 100 pg/mL with Buffer B.
[0204] The magnetic beads labeled with the capture antibody were diluted 50-fold with Buffer B, the biotin-labeled detection antibody was diluted to a concentration of 4 .Math.g/mL, and SA-Qbeads was diluted to 1.67 nM.
[0205] 25 .Math.L of diluted Spike proteins with different concentrations, the magnetic beads labeled with the capture antibody, biotin labeled detection antibody and SA-Qbeads were taken respectively, uniformly mixed by vortexing, and reacted for 1 h at 37° C.
[0206] The mixture was rinsed six times with Buffer C, and the supernatant was removed.
[0207] The beads were resuspended by adding 20 .Math.L of PBS, and 5 .Math.L of suspension was transferred to a coverslip. The beads were attached to the bottom of the coverslip using a magnet, and single molecule imaging was performed using a fluorescence microscope.
[0208] The magnetic beads distributed on the bottom surface of the glass were imaged under a bright field and a fluorescence imaging mode respectively by using a low-power objective lens, to obtain two sets of data of bright field and fluorescence. A concentration of antigen could be determined by the ratio of the number of magnetic beads containing the immune complex (i.e., the number of active beads) to the total number of magnetic beads.
[0209] Measurements were performed on a series of Spike protein concentrations, with each concentration point being repeated three times.
4. Experimental Results
[0210] The detection results are shown in
Comparative Example 1: Detection of Pseudovirus Expressing Novel Coronavirus S Protein on Surface
1. Experimental Components
[0211] The detection sample was a pseudovirus expressing novel coronavirus S protein on the surface, and the remaining experimental components were identical to those in Example 3.
2. Preparation Method:
2.1 Covalent Coupling of Magnetic Beads With Capture Antibody
[0212] The procedure was conducted identically to the corresponding procedure in Example 3.
2.2 Biotinylation Modification of Detection Antibody
[0213] The procedure was conducted identically to the corresponding procedure in Example 3.
3. Experimental Method
[0214] Pseudovirus was used as the detection sample, including solutions without the pseudovirus and a series of solutions containing 2, 5, 20, 100 and 200 pseudoviruses per 100 .Math.L. The remaining steps were performed identically to the corresponding steps in Example 3.
4. Experimental Results
[0215] It can be seen from the results in
Example 4 Magnetic Bead Assay for Detection of IL-6
1. Experimental Components
[0216] In the experiment, the capture antibody is 8C9 (Cnpair Biotech Co., Ltd.), the detection antibody is 9A2 (Cnpair Biotech Co., Ltd.), the detection sample is IL-6, and the other experimental components were identical to those in Example 1.
2. Preparation Method
2.1 Covalent Coupling of Magnetic Beads With Capture Antibody
[0217] The procedure was conducted identically to the corresponding procedure in Example 1.
2.2 Biotinylation Modification of Detection Antibody
[0218] The procedure was conducted identically to the corresponding procedure in Example 1.
3. Experimental Method
[0219] IL-6 was diluted to concentrations of 0, 0.05, 0.2, 0.5, 2, 5 and 20 pg/mL with Buffer B.
[0220] The magnetic beads labeled with capture antibody were diluted 150-fold with Buffer B, the biotin-labeled detection antibody was diluted to a concentration of 4 .Math.g/mL, and SA-Qbeads were diluted to 8 nM. The remaining procedures were performed identically to the corresponding procedures in Example 1.
4. Experimental Results
[0221] The detection results are shown in