STEALTH CHIMERIC ANTIGEN RECEPTOR AND USE THEREOF IN REDUCING CYTOTOXICITY TOWARDS NORMAL CELLS
20230272040 · 2023-08-31
Inventors
Cpc classification
C07K14/705
CHEMISTRY; METALLURGY
C07K2317/73
CHEMISTRY; METALLURGY
C07K2317/70
CHEMISTRY; METALLURGY
C07K14/70578
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
A61K39/464406
HUMAN NECESSITIES
A61K39/4611
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
C07K2319/95
CHEMISTRY; METALLURGY
International classification
C07K14/715
CHEMISTRY; METALLURGY
C07K14/705
CHEMISTRY; METALLURGY
Abstract
The present application relates to a chimeric antigen receptor (CAR) which comprises a target-dependent on-switch CAR. The CAR of the invention may reduce cytotoxicity towards normal cells and improve CAR-T safety. CAR molecules were designed using the transmembrane and juxtamembrane motifs of the IL2 receptor β chain (IL2Rβ or IL2Rb), the L ow-Density Lipoprotein Receptor (LDLR), the Seizure 6-like Protein 2 (SEZ6L2), and degradation sequence (PSKFFSQL) of IL2Rβ, which resulted in greatly reduced CAR expression at the cell surface in the absence of target antigen, while retaining downstream activation ability in response to antigen-expressing target cells. In the absence of target antigen, CAR surface expression is undetectable. The present application has shown that primary T cells expressing these surface-unstable CAR variants are able to elicit antigen-dependent target cell killing. By limiting CAR activity in this way, the present application can reduce therapeutic toxicity and T cell exhaustion. Due to its limited detectability in the absence of antigen, the present application refers to this system as a “Stealth CAR”. The present application further relates to compositions, preparation methods and uses of the Stealth CAR of the present application.
Claims
1. A chimeric antigen receptor (CAR) comprising: (1) an extracellular ligand-binding domain comprising a single chain variable fragment (scFv) specifically binding to a predetermined antigen; (2) a transmembrane (tm) linking juxtamembrane (jm) domain; wherein the transmembrane linking juxtamembrane domain comprises (a) an IL2 Receptor 3 chain (IL2Rβ) transmembrane domain and an IL2Rβ juxtamembrane domain, wherein and the transmembrane linking juxtamembrane domain is adjacent to an IL2Rβ degradation sequence (DT); (b) a Low-Density Lipoprotein Receptor (LDLR) transmembrane domain and an LDLR juxtamembrane domain; or (c) a Seizure 6-like Protein 2 (SEZ6L2) transmembrane domain and a SEZ6L2 juxtamembrane domain; and (3) an intracellular domain.
2. The CAR according to claim 1, wherein the CAR comprises from N-terminal to C-terminal: TAA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ, TAA scFv-CD8Hinge-IL2Rβ tm jm DT-CD28-CD3ζ, TAA scFv-CD8Hinge-LDLR tm jm-4-1BB-CD3ζ, or TAA scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ; wherein preferably, the TAA scFv is selected from one or more of CEA scFv, Claudin 18.2 scFv and HER2 scFv; more preferably, CEA scFv is MN14op CEA scFv, or Claudin 18.2 scFv is 841 Claudin 18.2 scFv; most preferably, MN14op CEA scFv, 841 Claudin 18.2 scFv, or HER2 scFv comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 5, 30, or 31 respectively; wherein preferably, the N-terminal of the CAR further contains a Leader Sequence and/or a HA Sequence.
3. The CAR according to claim 2, wherein the CAR comprises from N-terminal to C-terminal: HA-MN14op CEA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ, HA-MN14op CEA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP, HER2 scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP, HER2 scFv-CD8Hinge-IL2Rβ tm jm DT-CD28-CD3ζ-P2A-GFP, MN14op CEA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP, MN14op CEA scFv-CD8Hinge-LDLR tm jm-4-1BB-CD3ζ-P2A-GFP, MN14op CEA scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP, HER2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP, or HER2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP, optionally the CAR does not include P2A-GFP and/or HA; wherein preferably, the CAR comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 9, 14, 15, 17, 18, 19, 21, 22 or 24 respectively, optionally the amino acid sequence of CAR does not include the amino acid sequence of P2A-GFP, Leader Sequence, and/or HA.
4. A chimeric antigen receptor (CAR) comprising: (1) an extracellular ligand-binding domain comprising single chain variable fragment (scFv) specifically binding to a predetermined antigen; wherein preferably, the predetermined antigen is a tumor-associated antigen (TAA); more preferably, the TAA is selected from one or more of: CEA, Claudin 18.2, CGC3, Receptor tyrosine kinase-like Orphan Receptor 1 (ROR1), CD38, CD19, CD20, CD22, BCMA, CAIX, CD446, CD13, EGFR, EGFRvIII, EpCam, GD2, EphA2, HER1, HER2, ICAM-1, IL13Ra2, Mesothelin, MUC1, MUC16, NKG2D, PSCA, NY-ESO-1, MART-1, WT1, MAGE-A10, MAGE-A3, MAGE-A4, EBV, PD1, PD-L1, CD25, IL-2, and CD3; (2) a transmembrane domain, and (3) a cytoplasmic segment comprising an IL2Rβ degradation sequence (DT) and at least one signaling domain; wherein preferably, the IL2Rβ degradation sequence comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO: 2; wherein preferably, the IL2Rβ degradation sequence is at the C-terminal of the cytoplasmic segment.
5. The CAR according to claim 4, wherein the CAR comprises from N-terminal to C-terminal: TAA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-IL2Rβ DT; wherein preferably, the N-terminal of the CAR further contains Leader Sequence and/or HA Sequence; wherein preferably, the TAA scFv is CEA scFv; more preferably, the CEA scFv is MN14op CEA scFv; most preferably, MN14op CEA scFv comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 5; most preferably, the CAR comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 8 or 16 respectively, optionally the amino acid sequence of CAR does not include the amino acid sequence of P2A-GFP, Leader Sequence, and/or HA.
6. The CAR according to claim 1, wherein the transmembrane (tm) of the IL2Rβ, LDLR, or SEZ6L2 comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 1, 38 or 40 respectively; the juxtamembrane (m) of the IL2Rβ, LDLR, or SEZ6L2 comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 4, 39 or 41 respectively; the transmembrane (tm) linking juxtamembrane (m) of the IL2Rβ, LDLR, or SEZ6L2 comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 27, 28, or 29 respectively; the MN14op CEA scFv, 841 Claudin 18.2 scFv, HER2 scFv, PD-L1 scFv, HA, CD8Hinge, CD3ζ, 4-1BB, CD28, CD8 tm, GFP, or Leader Sequence comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 5, 30, 31, 32, 33, 34, 35, 36, 37, 42, 45 or 46 respectively; and/or the P2A comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 43 or 44.
7. A dual CAR comprising: a first CAR according to claim 1, and a second CAR comprising: (1) an extracellular ligand-binding domain comprising scFv specifically binding to a predetermined antigen; (2) a transmembrane domain; wherein preferably, the transmembrane domain is CD8 transmembrane domain; (3) an intracellular domain; wherein preferably, the intracellular domain comprises signaling domain; more preferably, the signaling domain comprises one or more signaling domains selected from the group consisting of a 4-1BB signaling domain, a CD28 signaling domain and a CD3ζ signaling domain; wherein the first CAR targets an antigen and the second CAR targets another antigen; wherein preferably, the first CAR and the second CAR is linked by P2A; more preferably the P2A comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 43 or 44; wherein preferably, the dual CAR comprises N-terminal to C-terminal: TAA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-CD8 tm-CD28-CD3ζ, TAA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-IL2Rβ tm jm DT-CD28-CD3ζ, TAA scFv-CD8Hinge-LDLR tm jm-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-CD8 tm-CD28-CD3ζ, TAA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-LDLR tm jm-CD28-CD3ζ, TAA scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-CD8 tm-CD28, or TAA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-another TAA scFv-CD8Hinge-SEZ6L2 tm jm-CD3ζ.
8. The dual CAR according to claim 7, wherein the dual CAR comprises N-terminal to C-terminal: 841 Claudin 18.2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-PD-L1 scFv-CD8Hinge-CD8 tm-CD28-(G.sub.4S).sub.2-GFP, 841 Claudin18.2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-HER2 scFv-IL2Rβ tm jm DT-CD28-CD3ζ, or 841 Claudin18.2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-HER2 scFv-SEZ6L2 tm jm-CD3ζ respectively, optionally the dual CAR does not include (G.sub.4S).sub.2-GFP; more preferably, 841 Claudin 18.2 scFv, HER2 scFv, or PD-L1 scFv comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 30, 31, or 32 respectively; most preferably, the CAR comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO. 20, 25 or 26 respectively, optionally the amino acid sequence of CAR does not include the amino acid sequence of (G.sub.4S).sub.2-GFP and/or Leader Sequence.
9. A nucleic acid comprising a polynucleotide encoding the CAR of claim 1.
10. A vector comprising the nucleic acid of claim 9.
11. A composition comprising the CAR of claim 1.
12. A method of treating disease in a subject in need thereof, comprising administering to the subject an effective amount of the composition of claim 11; wherein preferably, the disease is cancer; more preferably, the cancer is selected from one or more of hematological malignancy or solid tumor; most preferably, the solid tumor is ovarian cancer, pancreatic cancer, colon cancer, colorectal cancer, lymphoma, esophageal cancer, lung cancer, hepatic cancer, head-neck cancer, or cancer of the gallbladder.
13. A method of reducing the cytotoxicity of a CAR-T cell towards normal cells, using the CAR of claim 1.
14. A method of producing a CAR-T cell with reduced cytotoxicity towards normal cells comprising: (1) introducing to a host cell the nucleic acid of claim 9, and (2) isolating and/or expanding the CAR-T cells following the introduction.
15. The CAR of claim 1, wherein the predetermined antigen is a tumor-associated antigen (TAA).
16. The CAR of claim 15, wherein the TAA is selected from one or more of: CEA, Claudin 18.2, CGC3, Receptor tyrosine kinase-like Orphan Receptor 1 (ROR1), CD38, CD19, CD20, CD22, BCMA, CAIX, CD446, CD13, EGFR, EGFRvIII, EpCam, GD2, EphA2, HER1, HER2, ICAM-1, IL13Ra2, Mesothelin, MUC1, MUC16, PSCA, NY-ESO-1, MART-1, WT1, MAGE-A10, MAGE-A3, MAGE-A4, EBV, NKG2D, PD1, PD-L1, CD25, HL-2, and CD3.
17. The CAR of claim 1, wherein the IL2R degradation sequence is at the C-terminal of the transmembrane linking juxtamembrane domain.
18. The CAR of claim 1, wherein the IL2Rβ degradation sequence comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO: 2.
19. The CAR of claim 1, wherein the intracellular domain comprises a signaling domain.
20. The CAR of claim 19, wherein the signaling domain comprises one or more signaling domains selected from the group consisting of a 4-1BB signaling domain, a CD28 signaling domain and a CD3ζ signaling domain.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0119] The novel features of the application are set forth with particularity in the appended claims.
[0120] Some of the features and advantages of the present application are explained in the following detailed description in the embodiments and in the examples.
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DETAILED DESCRIPTION OF THE INVENTION
[0165] Unless defined otherwise, technical and scientific terms used herein have the same meaning as generally used in the art to which this disclosure belongs. For purposes of interpreting this specification, the following definitions will apply and whenever appropriate, terms used in the singular will also include the plural and vice versa. As used herein and in the appended claims, the singular forms “a”, “an”, and “the” also refer to the plural forms unless the context clearly dictates otherwise, e.g., reference to “a host cell” includes a plurality of such host cells.
[0166] As used herein, the term a “chimeric antigen receptor (CAR)” means a fused protein comprising an extracellular domain capable of binding to a predetermined antigen, an intracellular domain comprising a signaling domain, and a transmembrane domain. The phrase “binding to a predetermined antigen” means any proteinaceous molecule or part thereof that can specifically bind to the predetermined antigen. The “signaling domain” means any oligopeptide or polypeptide domain known to function to transmit a signal causing activation or inhibition of a biological process in a cell, for example, activation of an immune cell such as a T cell or a NK cell. Examples include 4-1BB, CD28 and/or CD3ζ signaling domain.
[0167] As used herein, the term a “IL2R” or “IL2Rb” means the IL2 Receptor β chain. The high-affinity IL2 Receptor is a transmembrane receptor comprised of three distinct, noncovalently associated components: the α, β, and γ chains. It has been shown that in the absence of the α and γ subunits, the β chain is constitutively endocytosed and degraded.
[0168] As used herein, the term a “Stealth CAR” or “Endocytic CAR” refers in its broadest sense to a chimeric antigen receptor (CAR) comprising: (1) an extracellular ligand-binding domain comprising a single chain variable fragment (scFv) specifically binding to a predetermined antigen; (2) a transmembrane (tm) linking juxtamembrane (jm) domain; wherein the transmembrane linking juxtamembrane domain comprises an IL2 Receptor 3 chain (IL2Rβ) transmembrane domain and an IL2Rβ juxtamembrane domain, and the transmembrane linking juxtamembrane domain is adjacent to IL2Rβ degradation sequence (DT); wherein preferably, the IL2R degradation sequence is at the C-terminal of the transmembrane linking juxtamembrane domain; wherein preferably, the IL2R degradation sequence comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO: 2; wherein the transmembrane linking juxtamembrane domain comprises a Low-Density Lipoprotein Receptor (LDLR) transmembrane domain and an LDLR juxtamembrane domain; or wherein the transmembrane linking juxtamembrane domain comprises a Seizure 6-like Protein 2 (SEZ6L2) transmembrane domain and a SEZ6L2 juxtamembrane domain; (3) an intracellular domain; wherein preferably, the intracellular domain comprises a signaling domain; more preferably, the signaling domain comprises one or more signaling domains selected from the group consisting of a 4-1BB signaling domain, a CD28 signaling domain and a CD3ζ signaling domain. Or a chimeric antigen receptor (CAR) comprising: (1) an extracellular ligand-binding domain comprising single chain variable fragment (scFv) specifically binding to a predetermined antigen; (2) a transmembrane domain, and (3) a cytoplasmic segment comprising an IL2Rβ degradation sequence (DT) and at least one signaling domain; wherein preferably, the IL2Rβ degradation sequence comprises an amino acid sequence that is at least about 95%, 96%, 97%, 98%, 99% or 100% identical to the amino acid sequence represented by SEQ ID NO: 2; wherein preferably, the IL2Rβ degradation sequence is at the C-terminal of the cytoplasmic segment. Or a dual CAR comprising a first CAR according to any of the above-described embodiments, and a second CAR.
[0169] As used herein, the term an “antigen binding fragment” or “antigen binding molecule” refers in its broadest sense to a molecule that specifically binds an antigenic determinant. Examples of antigen binding molecules are antibodies, antibody fragments and scaffold antigen binding proteins. The term “antibody” herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, monospecific and multispecific antibodies (e.g., bispecific antibodies), and antibody fragments so long as they exhibit the desired antigen-binding activity.
[0170] As used herein, the term a “single-chain variable fragment (scFv)” is a fusion protein of the variable regions of the heavy (VH) and light chains (VL) of an antibody, connected with a short linker peptide of ten to about 25 amino acids. The linker is usually rich in glycine for flexibility, as well as serine or threonine for solubility, and can either connect the N-terminus of the VH with the C-terminus of the VL, or vice versa. This protein retains the specificity of the original antibody, despite removal of the constant regions and the introduction of the linker. In addition, antibody fragments comprising single chain polypeptides have the characteristics of a VH domain, namely being able to assemble together with a VL domain, or of a VL domain, namely being able to assemble together with a VH domain to a functional antigen binding site, thereby providing the antigen binding properties of full length antibodies.
[0171] As used herein, the term a “therapeutically effective amount” of an agent, e.g., a pharmaceutical composition, refers to an amount effective, at dosages and for periods of time necessary, to achieve the desired therapeutic or prophylactic result. A therapeutically effective amount of an agent for example eliminates, decreases, delays, minimizes or prevents adverse effects of a disease.
[0172] As used herein, the term an “individual” or “subject” is a mammal. Mammals include, but are not limited to, domesticated animals (e.g., cows, sheep, cats, dogs, and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats). Particularly, the individual or subject is a human. The term “pharmaceutical composition” refers to a preparation which is in such form as to permit the biological activity of an active ingredient contained therein to be effective, and which contains no additional components which are unacceptably toxic to a subject to which the formulation would be administered. A “pharmaceutically acceptable excipient” refers to an ingredient in a pharmaceutical composition, other than an active ingredient, which is nontoxic to a subject. A pharmaceutically acceptable excipient includes, but is not limited to, a buffer, a stabilizer, or a preservative.
[0173] As used herein, “treatment” (and grammatical variations thereof such as “treat” or “treating”) refers to clinical intervention in an attempt to alter the natural course of the individual being treated, and can be performed either for prophylaxis or during the course of clinical pathology. Desirable effects of treatment include, but are not limited to, preventing occurrence or recurrence of disease, alleviation of symptoms, diminishment of any direct or indirect pathological consequences of the disease, preventing metastasis, decreasing the rate of disease progression, amelioration or palliation of the disease state, and remission or improved prognosis. In some embodiments, the molecules of the application are used to delay development of a disease or to slow the progression of a disease.
[0174] As used herein, the term “tumor-associated antigens (TAAs)” or “tumor antigens” means a biological molecule having antigenicity, the expression of which comes to be recognized in association with malignant alteration of a cell. The tumor antigen in the present disclosure includes a tumor specific antigen (an antigen which is present only in tumor cells and is not found in other normal cells), and a tumor-associated antigen (an antigen which is also present in other organs and tissues or heterogeneous and allogeneic normal cells, or an antigen which is expressed during development and/or differentiation).
[0175] The term “amino acid” as used within this application denotes the group of naturally occurring carboxy α-amino acids comprising alanine (three letter code: Ala, one letter code: A), arginine (Arg, R), asparagine (Asn, N), aspartic acid (Asp, D), cysteine (Cys, C), glutamine (Gln, Q), glutamic acid (Glu, E), glycine (Gly, G), histidine (His, H), isoleucine (Ile, I), leucine (Leu, L), lysine (Lys, K), methionine (Met, M), phenylalanine (Phe, F), proline (Pro, P), serine (Ser, S), threonine (Thr, T), tryptophan (Trp, W), tyrosine (Tyr, Y), and valine (Val, V). “Percent (%) amino acid sequence identity” with respect to a reference polypeptide (protein) sequence is defined as the percentage of amino acid residues in a candidate sequence that are identical with the amino acid residues in the reference polypeptide sequence, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity, and not considering any conservative substitutions as part of the sequence identity. Alignment for purposes of determining percent amino acid sequence identity can be achieved in various ways that are within the skill in the art, for instance, using publicly available computer software such as BLAST, BLAST-2, ALIGN. SAWI or Megalign (DNASTAR) software. Those skilled in the art can determine appropriate parameters for aligning sequences, including any algorithms needed to achieve maximal alignment over the full length of the sequences being compared. For purposes herein, however, % amino acid sequence identity values are generated using the sequence comparison computer program ALIGN-2. The ALIGN-2 sequence comparison computer program was authored by Genentech, Inc., and the source code has been filed with user documentation in the U.S. Copyright Office, Washington D.C., 20559, where it is registered under U.S. Copyright Registration No. TXU510087. The ALIGN-2 program is publicly available from Genentech, Inc., South San Francisco, Calif., or may be compiled from the source code. The ALIGN-2 program should be compiled for use on a UNIX operating system, including digital UNIX V4.0D. All sequence comparison parameters are set by the ALIGN-2 program and do not vary.
[0176] The terms “host cell”, “host cell line,” and “host cell culture” are used interchangeably and refer to cells into which exogenous nucleic acid has been introduced, including the progeny of such cells. Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and progeny derived therefrom without regard to the number of passages.
[0177] The term “cancer” or “tumor” as used herein refers to proliferative diseases, such as ovarian cancer, pancreatic cancer, colon cancer, colorectal cancer, lymphomas, lymphocytic leukemias, lung cancer, non-small cell lung (NSCL) cancer, bronchioloalviolar cell lung cancer, bone cancer, pancreatic cancer, skin cancer, cancer of the head or neck, cutaneous or intraocular melanoma, uterine cancer, ovarian cancer, rectal cancer, cancer of the anal region, stomach cancer, gastric cancer, breast cancer, uterine cancer, carcinoma of the fallopian tubes, carcinoma of the endometrium, carcinoma of the cervix, carcinoma of the vagina, carcinoma of the vulva, Hodgkin's Disease, cancer of the esophagus, cancer of the small intestine, cancer of the endocrine system, cancer of the thyroid gland, cancer of the parathyroid gland, cancer of the adrenal gland, sarcoma of soft tissue, cancer of the urethra, cancer of the penis, prostate cancer, cancer of the bladder, cancer of the kidney or ureter, renal cell carcinoma, carcinoma of the renal pelvis, mesothelioma, hepatocellular cancer, biliary cancer, neoplasms of the central nervous system (CNS), spinal axis tumors, brain stem glioma, glioblastoma multiforme, astrocytomas, schwanomas, ependymonas, medulloblastomas, meningiomas, squamous cell carcinomas, pituitary adenoma and Ewings sarcoma, including refractory versions of any of the above cancers, or a combination of one or more of the above cancers.
EXAMPLES
Example 1. Design and Generation of Endocytic CAR Constructs (MLB003 and MLB002)
[0178] Preparation of CAR constructs is a common technical method in the art. For example, first, CAR gene fragments are prepared through gene synthesis technology, then CAR PiggyBac transposon expression vectors are constructed, CAR constructs are electroporated into a target cell, and construct expression is assessed by flow cytometry or total protein analysis.
[0179] In this Example 1, two novel CAR constructs based on the IL2Rβ chain transmembrane and juxtamembrane motifs were designed (
[0186] HA-MN14op CAR (MLB001: HA-MN14op CEA scFv-CD8Hinge-CD8tm-4-1BB-CD3).
[0187] The pMAX-GFP is a control plasmid used to determine electroporation efficiency, particularly when a fluorescent marker is not available in the test construct.
[0188] Functional efficacy was evaluated by T cell activation assays, including but not limited to NFAT reporter assays and cytotoxicity assays.
TABLE-US-00001 TABLE 1 The sequences used in Examples 1-5 DESCRIPTION SEQ (CAR construct) SEQUENCE ID NO: IL2Rβ IPWLGHLLVGLSGAFGFIILVYLLI 1 transmembrane domain (tm) IL2Rβ degradation PSKFFSQL 2 sequence (DT) IL2Rβ truncated NCRNTGPWLKKVLKCNTPDPSKFFSQL 3 cytoplasmic domain IL2Rβ NCRNTGPWLKKVLKCNTPD 4 juxtamembrane sequence (jm) MN14op CEA scFv EVQLVESGGGVVKPGGSLRLSCSASGFDFTTYWMSWVRQAPGKG 5 LEWIGEIHPDSSTINYAPSLKDRFTISRDNAKNTLYLQMDSLRPEDT GVYYCASLYFGFPWFAYWGQGTTVTVSSGGGGSGGGGSGGGGS GGGGSDIVLTQSPSSLSASLGDRVTITCKASQDVGTSVAWYQQKP GKAPKLLIYWTSTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYY CQQYSLYRSFGGGTKVEIKG MN14op CAR MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCSA 6 (LBC001) SGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDRFTI (MN14op CEA scFv- SRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWGQGT CD8Hinge-CD8tm-4- TVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLGDRV 1BB-CD3ζ) TITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPSRFSG SGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIKGTTTP APRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYIWAPL AGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQTTQEEDGC SCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREE YDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEI GMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR* HA-MN14op CAR MALPVTALLLPLALLLHAARPYPYDVPDYAEVQLVESGGGVVKPG 7 (MLB001) GSLRLSCSASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINY (HA-MN14op CEA APSLKDRFTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPW scFv-CD8Hinge- FAYWGQGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSS CD8tm-4-1BB- LSASLGDRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRH CD3ζ) TGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTK VEIKGTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIYIWAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQT TQEEDGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNEL NLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKM AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPP R* HA-MN14op CAR- MALPVTALLLPLALLLHAARPYPYDVPDYAEVQLVESGGGVVKPG 8 DT GSLRLSCSASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINY (HA-MN14op scFv- APSLKDRFTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPW CD8Hinge-CD8 tm- FAYWGQGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSS 4-1BB-CD3ζ-DT) LSASLGDRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRH (MLB002) TGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTK VEIKGTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIYIWAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQT TQEEDGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNEL NLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKM AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPP RPSKFFSQL* HA-MN14op CAR- MALPVTALLLPLALLLHAARPYPYDVPDYAEVQLVESGGGVVKPG 9 IL2Rb-tm GSLRLSCSASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINY (HA-MN14op CEA APSLKDRFTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPW scFv-CD8Hinge- FAYWGQGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSS IL2Rβ tm jm DT-4- LSASLGDRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRH 1BB-CD3ζ) TGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTK (MLB003) VEIKGTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNT PDPSKFFSQLKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEE EGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKR RGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERR RGKGHDGLYQGLSTATKDTYDALHMQALPPR* CAR-DTAscFv TTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYIW 10 APLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQTTQEED GCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRR EEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYS EIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRPSKF FSQL* CAR- IL2Rβ TM Δ TTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIPW 11 scFv LGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPDPS KFFSQLKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGG CELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGR DPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGK GHDGLYQGLSTATKDTYDALHMQALPPR* *Leader sequence is underlined, HA tag is italicized, IL2Rβ sequences are bold, CD8 Hinge is underlined and italicized.
Example 2. Delivery of CAR Constructs Using Transposon for the Modification of Primary Human T Cells and Jurkat E6.1 Cells
[0189] Transposon-mediated delivery of endocytic CAR constructs in Example 1: The EF1α promoter was used to drive expression of our CAR constructs in a transposon vector.
[0190] Transduction of primary T cells and Jurkat E6.1 T cells (Jurkat E6.1 cells) with CAR constructs: PBMC-derived, CD3+ purified T cells (primary T cells) or Jurkat E6.1 T cells were transduced with transposon vectors carrying our CAR in Example 1 constructs using electroporation.
Example 3. Characterization of CAR T Cells Expressing Endocytic CAR (MLB002 and MLB003)
[0191] Transduced CAR-T cells were analyzed by flow cytometry to measure construct integration into the host cell. Cells were stained using anti-human Fab′ conjugated to AlexaFluor 488 (AF488). The endocytic CARs were also engineered with an extracellular, N-terminal HA tag to aid in detection of the receptor and perform pulse-chase experiments. CAR surface expression was detectable following electroporation of the constructs into Jurkat E6.1 cells (
Example 4. NFAT-Luciferase Reporter Assay for Endocytic CARs (MLB002 and MLB003)
[0192] Jurkat E6.1 NFAT-Luciferase reporter cells expressing CAR Constructs were mixed 1:1 with antigen-expressing target cells (LoVo) and luciferase activity was measured after 6-hours (
Example 5. Cytotoxicity Assay for Endocytic CARs (MLB002 and MLB003)
[0193] Donor-derived primary CD3+ cells (primary cells) transduced to express our CAR constructs were mixed 1:1 with antigen-expressing luciferase+ target cells (Kato-III, which express target antigen CEA) and co-cultured for 24 hours. Cytotoxicity was measured by increased luciferase activity (
Example 6. Non-Lentiviral Transfection of Jurkat and Primary CD3+ PBMCs with Endocytic CAR Constructs (MLB020, MLB013, MLB025, MLB048, MLB047, MLB054, and MLB055)
[0194] In this Example 6, CAR constructs were designed as follows: [0195] (1) CAR construct containing a IL2Rβ transmembrane domain, a IL2Rβ juxtamembrane domain, and further containing a IL2Rβ degradation sequence (DT): [0196] (a) MN14op CEA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP(MLB020); [0197] (b) HA-MN14op CEA scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP(MLB013). [0198] (2) CAR construct containing cytoplasmic segment comprising an IL2Rβ degradation sequence (DT): [0199] (a) MN14op CEA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-IL2R DT-P2A-GFP(MLB025). [0200] (3) CAR construct containing an LDLR transmembrane domain and an LDLR juxtamembrane domain: [0201] (a) MN14op CEA scFv-CD8Hinge-LDLR tm jm-4-1BB-CD3ζ-P2A-GFP(MLB048). [0202] (4) CAR construct containing a SEZ6L2 transmembrane domain and a SEZ6L2 juxtamembrane domain: [0203] (a) MN14op CEA scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP(MLB047); [0204] (b) 841 Claudin 18.2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP(MLB054). [0205] (5) The dual CAR construct: [0206] (a) 841 Claudin 18.2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-PD-L1 scFv-CD8Hinge-CD8 tm-CD28-(G.sub.4S).sub.2-GFP(MLB055). [0207] (6) The control CAR construct using CD8 transmembrane domain: [0208] (a) MN14op CEA scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-GFP (MLB010); [0209] (b) 841 Claudin 18.2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-GFP (MLB026).
[0210] The pMAX-GFP is a control plasmid used to determine electroporation efficiency, particularly when a fluorescent marker is not available in the test construct.
TABLE-US-00002 TABLE 2 The sequences used in Examples 6-10 DESCRIPTION SEQ (CAR construct) SEQUENCE ID NO: MN14op CEA MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCS 12 scFv -CD8Hinge- ASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDR CD8 tm-4-1BB- FTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWG CD3ζ-P2A-GFP QGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLG (MLB010) DRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPS RFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIK GTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIYIWAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQ TTQEEDGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYN ELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKD KMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQ ALPPRGSGATNFSLLKQAGDVEENPGPMVSKGEELFTGVVPILVE LDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLV TTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGN YKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHN VYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPV LLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELY K* 841 Claudin 18.2 MALPVTALLLPLALLLHAARPQVQLVQSGAEVKKPGSSVKVSCK 13 scFv-CD8Hinge- ASGGTFSSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRV CD8 tm-4-1BB- TVTADKSTSTAYMELSSLRSEDTAVYYCARERDNWDPYYYYYG CD3ζ-P2A-GFP MDVWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSTLSAS (MLB026) VGDRVTITCRASQSINSWLAWYQQKPGKAPKLLIYKASSLESGVP SRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSFPLTFGGGTKVE IKRTTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDF ACDIYIWAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRP VQTTQEEDGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQL YNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQ KDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALH MQALPPRGSGATNFSLLKQAGDVEENPGPMVSKGEELFTGVVPI LVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWP TLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKD DGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYN SHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGD GPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMD ELYK* MN14op CEA MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCS 14 scFv-CD8Hinge- ASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDR IL2Rβ tm jm DT- FTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWG 4-1BB-CD3ζ-P2A- QGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLG GFP DRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPS (MLB020) RFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIK GTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPD PSKFFSQLKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEE GGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKR RGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERR RGKGHDGLYQGLSTATKDTYDALHMQALPPRGSGATNFSLLKQ AGDVEENPGPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEG EGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDH MKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLV NRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVN FKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSK DPNEKRDHMVLLEFVTAAGITLGMDELYK* HA-MN14op CEA MALPVTALLLPLALLLHAARPYPYDVPDYAMEVOLVESGGGVV 15 scFv-CD8Hinge- KPGGSLRLSCSASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSS IL2Rβ tm jm DT- TINYAPSLKDRFTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYF 4-1BB-CD3ζ-P2A- GFPWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLT GFP QSPSSLSASLGDRVTITCKASQDVGTSVAWYQQKPGKAPKLLIY (MLB013) WTSTRHTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYR SFGGGTKVEIKGTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA VHTRGLDFACDIPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWL KKVLKCNTPDPSKFFSQLKRGRKKLLYIFKQPFMRPVQTTQEED GCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGR REEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEA YSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRA TNFSLLKQAGDVEENPGPMVSKGEELFTGVVPILVELDGDVNGH KFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQ CFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEV KFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADK QKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHY LSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK* MN14op CEA MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCS 16 scFv-CD8Hinge- ASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDR CD8 tm-4-1BB- FTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWG CD3ζ-IL2Rß DT - QGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLG P2A-GFP DRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPS (MLB025) RFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIK GTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DIYIWAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQ TTQEEDGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYN ELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKD KMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQ ALPPRPSKFFSQLGSGATNFSLLKQAGDVEENPGPMVSKGEELF TGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGK LPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQE RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHK LEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQ QNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAA GITLGMDELYK* MN14op CEA MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCS 17 scFv-CD8Hinge- ASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDR SEZ6L2 tm jm-4- FTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWG 1BB-CD3ζ-P2A- QGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLG GFP DRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPS (MLB047) RFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIK GTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DLALAILLPLGLVIVLGSGVYIYYTKLQGKSLFGFSGSHSYSPITV ESDFSNPLYKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEE EGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDK RRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGER RRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSGATNFSLLK QAGDVEENPGPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGE GEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPD HMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTL VNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALS KDPNEKRDHMVLLEFVTAAGITLGMDELYK* MN14op CEA MALPVTALLLPLALLLHAARPEVQLVESGGGVVKPGGSLRLSCS 18 scFv-CD8Hinge- ASGFDFTTYWMSWVRQAPGKGLEWIGEIHPDSSTINYAPSLKDR LDLR tm jm-4- FTISRDNAKNTLYLQMDSLRPEDTGVYYCASLYFGFPWFAYWG 1BB-CD3ζ-P2A- QGTTVTVSSGGGGSGGGGSGGGGSGGGGSDIVLTQSPSSLSASLG GFP DRVTITCKASQDVGTSVAWYQQKPGKAPKLLIYWTSTRHTGVPS (MLB048) RFSGSGSGTDFTFTISSLQPEDIATYYCQQYSLYRSFGGGTKVEIK GTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFAC DALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVYKRGR KKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCELRVKFSRS ADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP RRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQ GLSTATKDTYDALHMQALPPRGSGATNFSLLKQAGDVEENPGP MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLT LKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSA MPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKE DGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSV QLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVL LEFVTAAGITLGMDELYK* 841 Claudin 18.2 MALPVTALLLPLALLLHAARPQVQLVQSGAEVKKPGSSVKVSCK 19 scFv-CD8Hinge- ASGGTFSSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRV SEZ6L2 tm jm-4- TVTADKSTSTAYMELSSLRSEDTAVYYCARERDNWDPYYYYYG 1BB-CD3ζ-P2A- MDVWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSTLSAS GFP VGDRVTITCRASQSINSWLAWYQQKPGKAPKLLIYKASSLESGVP (MLB054) SRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSFPLTFGGGTKVE IKRTTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDF ACDLALAILLPLGLVIVLGSGVYIYYTKLQGKSLFGFSGSHSYSPI TVESDFSNPLYKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPE EEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVL DKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMK GERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSGATNFS LLKQAGDVEENPGPMVSKGEELFTGVVPILVELDGDVNGHKFSV SGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRY PDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGD TLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSA LSKDPNEKRDHMVLLEFVTAAGITLGMDELYK* 841 Claudin 18.2 MALPVTALLLPLALLLHAARPQVQLVQSGAEVKKPGSSVKVSCK 20 scFv-CD8Hinge- ASGGTFSSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRV SEZ6L2 tm jm-4- TVTADKSTSTAYMELSSLRSEDTAVYYCARERDNWDPYYYYYG 1BB-CD3ζ-P2A- MDVWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSTLSAS PD-L1 scFv- VGDRVTITCRASQSINSWLAWYQQKPGKAPKLLIYKASSLESGVP CD8Hinge-CD8 SRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSFPLTFGGGTKVE tm-CD28-(G4S)2- IKRTTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDF GFP ACDLALAILLPLGLVIVLGSGVYIYYTKLQGKSLFGFSGSHSYSPI (MLB055) TVESDFSNPLYKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPE EEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVL DKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMK GERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSGATNFS LLKQAGDVEENPGPMALPVTALLLPLALLLHAARPEVQLVQSGG GVVQPGRSLRLSCAASGFTFSNYAMHWVRQAPGKGLEWVAIIT YAGSNEYYADSVKGRFTISRDNSKNTLYLQMNSLRPEDTAVYYC ARDRIWVDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSP DSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKL LIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQY YSTPLTFGGGTKVEIKTTTPAPRPPTPAPTIASQPLSLRPEACRPAA GGAVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCRSKRSRL LHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRSGGGGSGGGG SMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKL TLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKS AMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF KEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDG SVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM VLLEFVTAAGITLGMDELYK* Internalization Motif is bold and underlined.
[0211] The T cell line, Jurkat E6.1, expressing an NFAT-driven luciferase reporter, and donor-derived T cells were induced to express our CAR constructs by electroporation of a Piggy Bac transposon plasmid with the CAR construct under control of the EF1α promoter and with transposase mRNA.
[0212] CAR surface expression was evaluated by flow cytometry through staining with AF647-conjugated αhuman Fab′ antibody; overall CAR construct expression was determined by co-expression of GFP under a P2A sequence (
Example 7. Evaluation of CAR Construct Activity by Luciferase Reporter Activity and CD69 Upregulation
[0213] LoVo cells expressing the CEACAM-5 target antigen were cultured in white, opaque flat-bottom 96-well plates in the presence of 1 μg/mL of Mitomycin C to inhibit cell proliferation. 25,000 LoVo target cells were seeded per well 6-8 hours prior to the initiation of the time course assay to allow for adherence. The assay was performed at an E:T ratio of 1:1 with CAR+ Jurkat T cells. After 8 hours of incubation, the wells were washed, and media replenished. 24, 6, 3, and 1 hour prior to luminescence readout, the wells were washed and Jurkat T cells expressing the CAR constructs were added to each well. At the end of the 24-hour period, Bio-Glo™ reagent (Promega) was added to each well to assess overall Jurkat cell activation (
[0214] Observation of the luminescent signal indicated that the activation kinetics of all of the CAR variants were similar and comparable to the original CAR construct, with NFAT-driven gene expression occurring strongly around 6 hours of activation. Although the kinetics of activation were comparable, the degree of cellular activation was strongest in the original (MLB010) and c-terminal (MLB025) tagged versions of the CARs. Both the LDLR- and SEZ6L2-based variants (MLB047 and MLB048) showed much lower levels of overall activation, and the IL2Rβ-based construct (MLB020) showed the lowest levels of expression (
[0215] To further determine the effect of the various transmembrane domains on the overall activation state of the Jurkat T cells, we performed a second co-culture assay to determine the extent of CD69 upregulation following stimulation. 50,000 LoVo Target cells were co-cultured with Jurkat CAR-positive T cells at a 1:1 ratio for 3, 6, or 24 hours and CD69 expression was evaluated by flow cytometry. By gating the cells on GFP expression, we were able to determine the fraction of CD69-expressing cells in the CAR-positive population and the overall degree of CD69 upregulation by assessing fluorescence intensity (
Example 8. Cytotoxicity Assay for CAR MLB013, MLB020, MLB047, and MLB048
[0216] To assess the effect of the IL2Rβ (MLB013), SEZ6L2 (MLB047), and LDLR (MLB048) domains on downstream T cell activity, cytotoxicity assays against CEACAM-5-positive target cell lines LoVo, A549, and HT-29 were set up. These target cells lines were selected as they have high, intermediate, and low levels of CEA expression, respectively. Given that CAR target antigens often have variable expression between the tumor tissue and noncancerous tissue, this assay allows us to assess the potential for on-target, off-tumor CAR activity, which can cause severe side effects in a clinical setting.
[0217] Donor-derived CD3+ PBMCs were transduced to express CAR constructs using the PiggyBac Expression system. Following electroporation, CAR expression was evaluated via flow cytometry by co-expression of GFP on the CAR expression vector and used to normalize cell numbers to directly compare CAR-T cell activity (
[0218] As expected, cytotoxic activity was directly related to the amount of antigen expression on the target cell lines, with the highest amount of cytotoxicity detected against LoVo Cells, and the lowest amount of cytotoxicity detected against HT-29 cells (
Example 9. Cytokine Expression Analysis for CAR MLB013, MLB047, and MLB048
[0219] Having shown that the novel transmembrane CAR constructs were able to retain cytotoxic activity against antigen-expressing target cells, we wanted to measure additional readouts of CAR T cell activity. Two common markers of activation are IL-2 and IFN-7. To assay for cytokine secretion, media was harvested following overnight cytotoxicity assays and soluble cytokine expression was determined via ELISA.
[0220] The trends that were observed in cytokine secretion mirrored those that we observed in cytotoxicity, with the highest levels of cytokine secretion detected against CEA-high target cells, and greatly reduced cytokine expression detected against HT-29 cells (
[0221] These findings are significant as CAR T cell therapies are known to promote potentially fatal Cytokine Release Syndrome (CRS). For this reason, the results are of clinical interest and indicate that the cytokine profile of CAR T cells can be tuned through the use of alternative transmembrane and juxtamembrane domains. By using the transmembrane domains and associated trafficking motifs of receptors that are known to be targeted towards the endosomal pathway, the results have shown that CAR T cell activity can be tuned, expanding the therapeutic window.
Example 10. Claudin18.2-Specific and Augmented CAR T Cell Activation in Jurkat E6.1 Cells
[0222] Jurkat E6.1 T cells expressing an NFAT-driven luciferase reporter were electroporated with the Piggy Bac vector expressing Claudin18.2-specific CAR constructs: MLB026, MLB054, MLB055; and Piggy Bac transposase mRNA. As before, CAR expression was evaluated by surface staining with AF647-conjugated αhuman-Fab′ antibody and co-expression of GFP on the CAR vector via a P2A sequence (
[0223] To screen for CAR T cell activity, CLDN18.2(Claudin 18.2)-specific CAR T cells were co-cultured with antigen-negative HEK293T cells or HEK293T and NUGC4 cells transduced to express CLDN18.2(Claudin 18.2). As before, 50,000 target cells were cultured at a 1:1 ratio with CAR-expressing Jurkats. As with the αCEA CAR variants (
Example 11. SEZ6L2-Modified CARs Used to Attenuate Cytokine Profile in T Cells Targeted Towards Claudin18.2
[0224] PBMCs were isolated via Ficoll-Paque separation and purified by CD3 negative selection to enrich the T cell population. Isolated T cells were stimulated with StemCell T cell activator (CD2/CD3/CD28) in the presence of IL-2, IL-7, and IL-15 for three days and then electroporated with hyperactive PiggyBac transposase mRNA and PiggyBac vectors MLB026 and MLB054 to induce the expression of CARs based on either the CD8a transmembrane domain or the SEZ6L2 transmembrane and juxtamembrane domain, respectively. These CAR constructs utilize the 841 scFv, which is specific to Claudin18.2.
[0225] CAR surface expression was verified by flow cytometry by staining with a fluorescently-conjugated anti-human F(ab′).sub.2 antibody. Transduced cells were identified by the joint expression of GFP on the CAR construct via a P2A sequence. Results indicate strong surface staining in T cells expressing the CD8a transmembrane sequence (MLB026) while T cells expressing the SEZ6L2 modified CAR (MLB054) had negligible surface staining (
[0226] To test the functional capabilities of the anti-Claudin18.2, SEZ6L2-modified Stealth CAR, a luciferase-based cytotoxicity assay was performed against HEK293T or NUGC4 cells transduced to overexpress the Claudin18.2 isoform as well as luciferase. The number of CAR positive cells was evaluated by flow cytometry and counts were normalized to the number of CAR positive cells (
[0227] The co-culture supernatants were analyzed for expression of IFN-γ produced by the CAR T cells via sandwich ELISA. Supernatant was diluted 1-in-3 in ELISA diluent and colorimetric activity of the HRP detection substrate indicated that the SEZ6L2-modified Stealth CAR (MLB054) had a reduced cytokine secretion profile against both the HEK-cldn18.2 (
Example 12. SEZ6L2- and IL2Rβ-Modified CARs (MLB038, MLB039, and MLB080) Used to Attenuate Cytokine Profile in T Cells Targeted Toward HER2
[0228] In this Example 12, CAR constructs were designed as follows: [0229] (1) CAR construct comprising a IL2Rβ transmembrane domain, a IL2Rβ juxtamembrane domain, and further comprising a IL2Rβ degradation sequence (DT): [0230] (a) HER2 scFv-CD8Hinge-IL2Rβ tm jm DT-4-1BB-CD3ζ-P2A-GFP (MLB038); [0231] (b) HER2 scFv-CD8Hinge-IL2Rβ tm jm DT-CD28-CD3ζ-P2A-GFP (MLB039); [0232] (2) CAR construct comprising a SEZ6L2 transmembrane domain and a SEZ6L2 juxtamembrane domain: [0233] (a) HER2 scFv-CD8Hinge-SEZ6L2 tm jm-4-1BB-CD3ζ-P2A-GFP (MLB080). [0234] (3) The dual CAR constructs: [0235] (a) 841 Claudin18.2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-HER2 scFv-IL2Rβ tm jm DT-CD28-CD3ζ (MLB040) [0236] (b) 841 Claudin 18.2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-HER2 scFv-SEZ6L2 tm jm-CD3ζ (MLB108). [0237] (4) The control CAR construct using CD8 transmembrane domain: [0238] (a) HER2 scFv-CD8Hinge-CD8 tm-4-1BB-CD3ζ-P2A-GFP(MLB079).
TABLE-US-00003 TABLE 3 The sequences used in Examples 12-13 DESCRIPTION SEQ (CAR construct) SEQUENCE ID NO: HER2 scFv- MALPVTALLLPLALLLHAARPDIQMTQSPSSLSASVGDRVTITCRA 21 CD8Hinge-IL2Rβ SQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTD tm jm DT-4-1BB- FTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGGGGSGGGG CD3ζ-P2A-GFP SGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYI (MLB038) HWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNT AYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSST TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIPW LGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPDPSKFF SQLKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCELR VKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGRDPEM GGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDG LYQGLSTATKDTYDALHMQALPPRATNFSLLKQAGDVEENPGPM VSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPE GYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNI LGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADH YQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTA AGITLGMDELYK* HER2 scFv- MALPVTALLLPLALLLHAARPDIQMTQSPSSLSASVGDRVTITCRA 22 CD8Hinge-IL2Rβ SQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTD tm jm DT- CD28- FTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGGGGSGGGG CD3ζ-P2A-GFP SGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYI (MLB039) HWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNT AYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSST TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIPW LGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPDPSKFF SQLRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRSR VKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGRDPEM GGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDG LYQGLSTATKDTYDALHMQALPPRATNFSLLKQAGDVEENPGPM VSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLK FICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPE GYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNI LGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADH YQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTA AGITLGMDELYK* HER2 scFv- MALPVTALLLPLALLLHAARPDIQMTQSPSSLSASVGDRVTITCRA 23 CD8Hinge-CD8 SQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTD tm-4-1BB-CD3ζ- FTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGGGGSGGGG P2A-GFP SGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYI (MLB079) HWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNT AYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSST TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYI WAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQTTQEE DGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGR REEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAY SEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSG ATNFSLLKQAGDVEENPGPMVSKGEELFTGVVPILVELDGDVNGH KFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCF SRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFE GDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNG IKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSA LSKDPNEKRDHMVLLEFVTAAGITLGMDELYK* HER2 scFv- MALPVTALLLPLALLLHAARPDIQMTQSPSSLSASVGDRVTITCRA 24 CD8Hinge- SQDVNTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSRSGTD SEZ6L2 tm jm-4- FTLTISSLQPEDFATYYCQQHYTTPPTFGQGTKVEIKGGGGSGGGG 1BB-CD3ζ-P2A- SGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFNIKDTYI GFP HWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNT (MLB080) AYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSST TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDLAL AILLPLGLVIVLGSGVYIYYTKLQGKSLFGFSGSHSYSPITVESDFSN PLYKRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCELR VKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGRDPEM GGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDG LYQGLSTATKDTYDALHMQALPPRGSGATNFSLLKQAGDVEENP GPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKL TLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSA MPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKED GNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQL ADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEF VTAAGITLGMDELYK* 841 Claudin18.2 MALPVTALLLPLALLLHAARPQVQLVQSGAEVKKPGSSVKVSCKA 25 scFv-CD8Hinge- SGGTFSSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTV CD8 tm-4-1BB- TADKSTSTAYMELSSLRSEDTAVYYCARERDNWDPYYYYYGMD CD3ζ-P2A-HER2 VWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSTLSASVGD scFv-IL2Rβ tm jm RVTITCRASQSINSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFS DT-CD28-CD3ζ GSGSGTEFTLTISSLQPDDFATYYCQQYNSFPLTFGGGTKVEIKRTT (MLB040) TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYI WAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQTTQEE DGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGR REEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAY SEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSG ATNFSLLKQAGDVEENPGPMALPVTALLLPLALLLHAARPDIQMT QSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYS ASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPT FGQGTKVEIKGGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQP GGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTR YADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDG FYAMDYWGQGTLVTVSSTTTPAPRPPTPAPTIASQPLSLRPEACRP AAGGAVHTRGLDFACDIPWLGHLLVGLSGAFGFIILVYLLINCRNT GPWLKKVLKCNTPDPSKFFSQLRSKRSRLLHSDYMNMTPRRPGPT RKHYQPYAPPRDFAAYRSRVKFSRSADAPAYKQGQNQLYNELNL GRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAE AYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR* 841 Claudin 18.2 MALPVTALLLPLALLLHAARPQVQLVQSGAEVKKPGSSVKVSCKA 26 scFv-CD8Hinge- SGGTFSSYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTV CD8 tm-4-1BB- TADKSTSTAYMELSSLRSEDTAVYYCARERDNWDPYYYYYGMD CD3ζ-P2A-HER2 VWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSTLSASVGD scFv-SEZ6L2 tm RVTITCRASQSINSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFS jm-CD3ζ GSGSGTEFTLTISSLQPDDFATYYCQQYNSFPLTFGGGTKVEIKRTT (MLB108) TTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYI WAPLAGTCGVLLLSLVITLYCKRGRKKLLYIFKQPFMRPVQTTQEE DGCSCRFPEEEEGGCELRVKFSRSADAPAYKQGQNQLYNELNLGR REEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAY SEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPRGSG ATNFSLLKQAGDVEENPGPMALPVTALLLPLALLLHAARPDIQMT QSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPKLLIYS ASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYTTPPT FGQGTKVEIKGGGGSGGGGSGGGGSGGGGSEVQLVESGGGLVQP GGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNGYTR YADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDG FYAMDYWGQGTLVTVSSTTTPAPRPPTPAPTIASQPLSLRPEACRP AAGGAVHTRGLDFACDLALAILLPLGLVIVLGSGVYIYYTKLQGK SLFGFSGSHSYSPITVESDFSNPLYRVKFSRSADAPAYKQGQNQLY NELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKD KMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQA LPPR* Internalization Motif is bold and underlined.
TABLE-US-00004 TABLE 4 The sequences used in the CAR and antibodies of application transmembrane IPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKCNTPD 27 linking juxtamembrane of IL2Rβ (IL2Rβ tm jm ) transmembrane ALSIVLPIVLLVFLCLGVFLLWKNWRLKNINSINFDNPVY 28 linking juxtamembrane of LDLR (LDLR tm jm) transmembrane LALAILLPLGLVIVLGSGVYIYYTKLQGKSLFGFSGSHSYSPITVESD 29 linking FSNPLY juxtamembrane of SEZ6L (SEZ6L2 tm jm) 841 Claudin 18.2 QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGL 30 scFv EWMGRIIPILGIANYAQKFQGRVTVTADKSTSTAYMELSSLRSEDT AVYYCARERDNWDPYYYYYGMDVWGQGTTVTVSSGGGGSGGG GSGGGGSDIQMTQSPSTLSASVGDRVTITCRASQSINSWLAWYQQ KPGKAPKLLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATY YCQQYNSFPLTFGGGTKVEIKRT HER2 scFv DIQMTQSPSSLSASVGDRVTITCRASQDVNTAVAWYQQKPGKAPK 31 LLIYSASFLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHYT TPPTFGQGTKVEIKGGGGSGGGGSGGGGSGGGGSEVQLVESGGGL VQPGGSLRLSCAASGFNIKDTYIHWVRQAPGKGLEWVARIYPTNG YTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWG GDGFYAMDYWGQGTLVTVSS PD-L1 scFv EVQLVQSGGGVVQPGRSLRLSCAASGFTFSNYAMHWVRQAPGKG 32 LEWVAIITYAGSNEYYADSVKGRFTISRDNSKNTLYLQMNSLRPED TAVYYCARDRIWVDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQ MTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQ PPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC QQYYSTPLTFGGGTKVEIK HA YPYDVPDYA 33 CD8 Hinge TTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACD 34 CD3ζ RVKFSRSADAPAYKQGQNQLYNELNLGRREEYDVLDKRRGRDPE 35 MGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHD GLYQGLSTATKDTYDALHMQALPPR 4-1BB KRGRKKLLYIFKQPFMRPVQTTQEEDGCSCRFPEEEEGGCEL 36 CD28 RSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS 37 transmembrane of ALSIVLPIVLLVFLCLGVFLLW 38 LDLR (LDLR tm) juxtamembrane of KNWRLKNINSINFDNPVY 39 LDLR (LDLR jm) transmembrane of LALAILLPLGLVIVLGSGVYI 40 SEZ6L2 (SEZ6L2 tm) juxtamembrane of YYTKLQGKSLFGFSGSHSYSPITVESDFSNPLY 41 SEZ6L2 (SEZ6L2 jm) CD8 IYIWAPLAGTCGVLLLSLVITLYC 42 transmembrane (CD8 tm) P2A-1 GSGATNFSLLKQAGDVEENPGP 43 P2A-2 ATNFSLLKQAGDVEENPGP 44 GFP MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL 45 KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMP EGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN ILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLAD HYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVT AAGITLGMDELYK Leader Sequence MALPVTALLLPLALLLHAARP 46 VH of EVQLVQSGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKG 47 hCLDN18.2-808 LEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE antibody DTAVYYCARELRFFDWLLGSAFDIWGQGTTVTVSS VL of DIVMTQSPSSLSASVGDRVTITCRASQGIRNDLGWYQQKPGKAPK 48 hCLDN18.2-808 LLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCLQDY antibody NYPRTFGQGTKVEIK VH of QVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGL 49 hCLDN18.2-841 EWMGRIIPILGIANYAQKFQGRVTVTADKSTSTAYMELSSLRSEDT antibody AVYYCARERDNWDPYYYYYGMDVWGQGTTVTVSS VL of DIQMTQSPSTLSASVGDRVTITCRASQSINSWLAWYQQKPGKAPK 50 hCLDN18.2-841 LLIYKASSLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYN antibody SFPLTFGGGTKVEIK
[0239] PBMCs were isolated via Ficoll-Paque separation and purified by CD3 negative selection to enrich the T cell population. Isolated T cells were stimulated with StemCell T cell activator (CD2/CD3/CD28) in the presence of IL-2, IL-7, and IL-15 for three days and then electroporated with hyperactive PiggyBac transposase mRNA and PiggyBac vectors MLB038, MLB039, MLB079, and MLB080. All four CAR variants were engineered with the 4D5V8 scFv derived from the Herceptin antibody, which recognizes HER2 (the amino acid sequence of 4D5V8 Her2 scFv is SEQ ID NO. 31). The MLB038 and MLB039 CARs were designed based on the IL2 Receptor β transmembrane and juxtamembrane sequence. MLB038 and MLB039 are distinguishable by their coreceptor signaling domains, MLB038 was designed using the CD28 coreceptor domain and MLB039 was designed with the 4-11BB signaling domain. Both formats also have the CD3ζ intracellular ITAM signaling motifs. MLB079 was designed as a control and based on the CD8α transmembrane domain, while MLB080 was engineered with the SEZ6L2 transmembrane and juxtamembrane sequences.
[0240] CAR surface expression was verified by flow cytometry by staining with a fluorescently-conjugated anti-human F(ab′).sub.2 antibody. Transduced cells were identified by the joint expression of GFP on the CAR construct via a P2A sequence. Results indicate strong surface staining in T cells expressing the CD8a transmembrane sequence while T cells expressing the IL2Rβ- or SEZ6L2-modified CARs (MLB038, MLB039, MLB080) had greatly reduced surface staining indicative of their predominantly intracellular localization (
[0241] To test the functional capacity of the anti-HER2 stealth CAR variants, luciferase-based cytotoxicity assays were performed against the following cell lines SK-BR-3, LoVo, and MDA-MB-231—which is clinically described as a triple-negative breast cancer cell line (
[0242] The co-culture supernatants were analyzed for expression of IFN-γ produced by the CAR T cells via sandwich ELISA. Supernatant was diluted 1-in-3 in ELISA diluent and colorimetric activity of the HRP detection substrate indicated that the Stealth CAR variants MLB038, MLB039, and MLB080 had reduced cytokine secretion relative to the CD8ca transmembrane control CAR, MLB079, against all of the cell lines tested: MDA-MB-231, LoVo, SKBR3 (
Example 13. Claudin18.2/HER2 Targeted Dual CARs Show Cytotoxic Potential and Enhanced Functionality Against Tumor Cell Lines Expressing One or Two Tumor-Associated Antigens
[0243] HEKcldn18.2 Cells were profiled for HER2 and Claudin18.2 expression using either a commercially available HER2 antibody or the Claudin18.2 antibody clones developed in-house, hCLDN18.2-808 antibody (the amino acid sequence of VH is SEQ ID NO:47; the amino acid sequence of VL is SEQ ID NO:48) and hCLDN18.2-841 antibody (the amino acid sequence of VH is SEQ ID NO:49; the amino acid sequence of VL is SEQ ID NO:50) (
[0244] PBMCs were isolated via Ficoll-Paque separation and purified by CD3 negative selection to enrich the T cell population. Isolated T cells were stimulated with StemCell T cell activator (CD2/CD3/CD28) in the presence of IL-2, IL-7, and IL-15 for three days and then electroporated with hyperactive PiggyBac transposase mRNA and PiggyBac vectors MLB026 and MLB108. CAR surface expression was verified by flow cytometry by staining with a fluorescently-conjugated anti-human F(ab′).sub.2 antibody (
[0245] Functional assays indicated that Dual CAR MLB108 was able to elicit antigen specific killing of HEKcldn18.2 cells in a dose-dependent manner (
[0246] In additional dual CAR assays, the MLB040 Dual CAR format was compared with both the Claudin18.2-specific dominant CAR (MLB026) and the HER2 stealth CARs (MLB038 and MLB039). PBMCs were isolated via Ficoll-Paque separation and purified by CD3 negative selection to enrich the T cell population. Isolated T cells were stimulated with StemCell T cell activator (CD2/CD3/CD28) in the presence of IL-2, IL-7, and IL-15 for three days and then electroporated with hyperactive PiggyBac transposase mRNA and PiggyBac vectors MLB026, MLB038, MLB039, and MLB040. CAR surface expression was verified by flow cytometry by staining with a fluorescently-conjugated anti-human F(ab′).sub.2 antibody (
[0247] Functional assays indicated a slight enhancement of cytotoxicity against HEKcldn18.2 cells, which express high levels of Claudin18.2 and low levels of HER2 (
OTHER EMBODIMENTS
[0248] It is to be understood that while the disclosure has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the disclosure, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.
[0249] The various embodiments described above can be combined to provide further embodiments. All of the U.S. patents, U.S. patent application publications, U.S. patent applications, foreign patents, foreign patent applications and non-patent publications referred to in this specification and/or listed in the Application Data Sheet are incorporated herein by reference, in their entirety. Aspects of the embodiments can be modified to employ concepts of the various patents, applications and publications to provide yet further embodiments.
[0250] These and other changes can be made to the embodiments in light of the above-detailed description. In general, in the following claims, the terms used should not be construed to limit the claims to the specific embodiments disclosed in the specification and the claims, but should be construed to include all possible embodiments along with the full scope of equivalents to which such claims are entitled. Accordingly, the claims are not limited by the disclosure.
CITATION LIST
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