SYNTHETIC RETINOIDS FOR USE IN RAR ACTIVATION
20220144783 · 2022-05-12
Assignee
Inventors
- Andrew Whiting (Durham, GB)
- David Chisholm (Durham, GB)
- Iain Greig (Aberdeenshire, GB)
- Thabat Khatib (Aberdeenshire, GB)
- Peter McCaffery (Aberdeenshire, GB)
Cpc classification
G01N2333/70567
PHYSICS
A61K31/192
HUMAN NECESSITIES
C07D241/38
CHEMISTRY; METALLURGY
A61K31/495
HUMAN NECESSITIES
C07D401/06
CHEMISTRY; METALLURGY
C07D233/96
CHEMISTRY; METALLURGY
C07D241/42
CHEMISTRY; METALLURGY
A61P25/28
HUMAN NECESSITIES
C07C65/28
CHEMISTRY; METALLURGY
C07C63/74
CHEMISTRY; METALLURGY
C07D241/24
CHEMISTRY; METALLURGY
C07C65/26
CHEMISTRY; METALLURGY
International classification
C07D241/38
CHEMISTRY; METALLURGY
A61P25/28
HUMAN NECESSITIES
C07C63/74
CHEMISTRY; METALLURGY
C07C65/26
CHEMISTRY; METALLURGY
C07D233/96
CHEMISTRY; METALLURGY
C07D241/24
CHEMISTRY; METALLURGY
C07D401/06
CHEMISTRY; METALLURGY
G01N33/50
PHYSICS
Abstract
The present invention relates to compounds of formula I: in which A.sup.1-A.sup.7 and R.sup.1 to R.sup.5 are defined herein, for use in the treatment of a condition or disease which is alleviated by the activation of retinoic acid receptors (RAR). The invention also relates to pharmaceutical compounds comprising such compounds, and related methods of treatment. In an aspect, the invention relates to a method of screening compounds for therapeutic potential in the treatment of a condition or disease which is alleviated by the activation of retinoic acid receptors (RAR). Aspects of the invention relate to novel compounds of formula I in which at least one of A.sup.1 to A.sup.3 is or at least one of A.sup.4 is CR.sup.12 or A.sup.5 is CR.sup.13 in which R.sup.12/R.sup.13 is halogen.
Claims
1. A compound of formula I: ##STR00028## in which: A.sup.1 is N or CR.sup.6; A.sup.2 is N or CR.sup.7; A.sup.3 is N or CR.sup.8; R.sup.6 and R.sup.8, are each independently hydrogen, C.sub.1-C.sub.10 alkyl, F, Br or Cl; R.sup.7 is independently hydrogen, C.sub.1-C.sub.10 alkyl, F, Br, Cl or —OCR.sup.9 in which R.sup.9 is H or C.sub.1-C.sub.6 alkyl; R.sup.1 to R.sup.4 are each independently alkyl C.sub.1-C.sub.10 alkyl, or R.sup.1 and R.sup.2 and/or R.sup.3 and R.sup.4 join to form a 3-membered ring; A.sup.4 is N or CR.sup.12; A.sup.5 is N or CR.sup.13; A.sup.6 is N or CR.sup.14; A.sup.7 is N or CR.sup.15; each R.sup.12 to R.sup.15 is independently H, halogen or haloalkyl C.sub.1-C.sub.10 , and R.sup.5 is —C(═O)R.sup.16 or —C(═O)OR.sup.16 in which R.sup.16 is H or C.sub.1-10 alkyl; with the proviso that at least one of A.sup.1 to A.sup.7 is N or at least one of R.sup.12 to R.sup.15 is F, Cl or Br; and isomers thereof; in free or in salt form; for use in the treatment of a condition or disease which is alleviated by the activation of retinoic acid receptors (RAR).
2. A compound as claimed in claim 1, wherein at least one of A.sup.1 to A.sup.3 is N.
3. A compound as claimed in claim 1, wherein A.sup.1 and A.sup.3 are N.
4. A compound as claimed in claim 1, wherein A.sup.2 is CR.sup.7.
5. A compound as claimed in claim 4, where R.sup.7 is hydrogen.
6. A compound as claimed in claim 1, wherein R.sup.5 is —COOH.
7. A compound as claimed in claim 1, wherein at least one of A.sup.4, A.sup.5 or A.sup.6 is CF.
8. A compound according to claim 1, which is selected from: ##STR00029## ##STR00030## ##STR00031## ##STR00032## ##STR00033##
9. A compound according to claim 8, which is selected from: ##STR00034##
10. A compound as claimed in claim 1, wherein the disease or condition which is alleviated by the activation of RAR is selected from Amyotrophic lateral sclerosis (ALS), Parkinson's disease, multiple sclerosis (MS), Alzheimer's disease, early-stage Alzheimer's disease, intermediate-stage Alzheimer's disease, late-stage Alzheimer's disease, cognitive disorders, memory impairment, memory deficit, senile dementia, cognitive impairment, mild cognitive impairment, stroke, traumatic brain injury, epilepsy and spinal cord injury.
11. A compound of formula I as defined in claim 1 in the manufacture of a medicament for use in the treatment of a disease or condition which is alleviated by the activation of RAR.
12. A method of treatment of a patient with a disease or condition which is alleviated by the activation of RAR, the method comprising administering to a patient a therapeutically effective amount of a compound of formula I, wherein formula I is as defined in claim 1.
13. A pharmaceutical composition comprising a compound of formula I as defined in claim 1, optionally in conjunction with one or more pharmaceutically acceptable excipients, diluents or carriers, for use in the treatment of a disease or condition which is alleviated by the activation of RAR.
14. A compound of formula I: ##STR00035## in which: A.sup.1 is N or CR.sup.6; A.sup.2 is N or CR.sup.7; A.sup.3 is N or CR.sup.8; R.sup.6 and R.sup.8, are each independently hydrogen, C.sub.1-C.sub.10 alkyl, F, Br or Cl; R.sup.7 is independently hydrogen, C.sub.1-C.sub.10 alkyl, F, Br, Cl or —OCR.sup.9 in which R.sup.9 is H or C.sub.1-C.sub.6 alkyl; R.sup.1 to R.sup.4 are each independently alkyl C.sub.1-C.sub.10 alkyl, or R.sup.1 and R.sup.2 and/or R.sup.3 and R.sup.4 join to form a 3-membered ring; A.sup.4 is N or CR.sup.12; A.sup.5 is N or CR.sup.13; A.sup.6 is N or CR.sup.14; A.sup.7 is N or CR.sup.15; each R.sup.12 to R.sup.15 is independently H, halogen or haloalkyl C.sub.1-C.sub.10, and R.sup.5 is —C(═O)R.sup.16, or —C(═O)OR.sup.16 in which R.sup.16 is H or C.sub.1-10 alkyl; with the proviso that at least one of A.sup.1 to A.sup.3 is N or at least one of A.sup.4 is CR.sup.12 or A.sup.5 is CR.sup.13 in which R.sup.12/R.sup.13 is halogen; and isomers thereof; in free or in salt form.
15. A compound as claimed in claim 14 in which at least one of A.sup.1 to A.sup.3 is N or at least one of A.sup.4 is CR.sup.12 or A.sup.5 is CR.sup.13 in which R.sup.12/R.sup.13 is F.
16. A compound as claimed in claim 14 in which at least one of A.sup.1 to A.sup.3 is N.
17. A compound as claimed in claim 14 in which A.sup.1and A.sup.3 are both N.
18. A method of screening compounds for therapeutic potential in the treatment of conditions or diseases which are alleviated by the activation of RAR, the method comprising: performing an assay to determine the efficacy (E.sub.max) of a compound in activating a RAR as an indicator of genomic activity; performing an assay to determine the efficacy (E.sub.max) of a compound as an indicator of non-genomic activity; for each assay, comparing the E.sub.max to a baseline value; and selecting those compounds which have an E.sub.max above the baseline value in both assays for further investigation.
19. A method as claimed in claim 18, wherein the assay to determine the efficacy (E.sub.max) of a compound as an indicator of non-genomic activity is a kinase phosphorylation assay.
20. A method as claimed in claim 19, wherein the kinase phosphorylation assay is an ERK1/2 phosphorylation assay.
Description
EXAMPLES
[0093] The invention will now be described by way of example only with reference to the accompanying figures, in which:
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[0096]
[0097]
[0098]
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[0100]
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[0102]
EXAMPLE 1: SYNTHESIS OF EXEMPLARY COMPOUNDS OF FORMULA I
1.1 Synthesis of Coupling Partners
1.1.1. Synthesis of 6-Iodo-1,1,4,4-tetramethyl-1,2,3,4-tetrahydronaphthalene, 1
[0103] The synthesis of 6-Iodo-1,1,4,4-tetramethyl-1,2,3,4-tetrahydronaphthalene (1) is illustrated in
1.1.2 Synthesis of 6-Ethynyl-1,1,4,4-tetramethyl-1,2,3,4-tetrahydronaphthalene, 3
[0104] The synthesis of 6-ethynyl-1,1,4,4-tetramethyl-1,2,3,4-tetrahydronaphthalene (3) is illustrated in
1.1.3 Synthesis of 4-bromo-3-fluorobenzoate, 4
[0105] The synthesis of 4-bromo-3-fluorobenzoate (4) is illustrated in
1.1.4 Synthesis of Methyl 4-ethynyl-3-fluorobenzoate, 6
[0106] The synthesis of Methyl 4-ethynyl-3-fluorobenzoate (6) is illustrated in
1.1.5 Synthesis of Methyl 5-bromopyridine-2-carboxylate, 8
[0107] The synthesis of methyl 5-bromopyridine-2-carboxylate (8) is illustrated in
1.1.6 Synthesis of 2,2,5,5-Tetramethylhexanedioic acid, 9
[0108] The synthesis of 2,2,5,5-Tetramethylhexanedioic acid (9) is illustrated in
1.1.7 Synthesis of 1,6-Diethyl 2,2,5,5-tetramethylhexanedioate, 10
[0109] The synthesis of 1,6-Diethyl 2,2,5,5-tetramethylhexanedioate (10) is illustrated in
1.1.8 Synthesis of Trimethyl({3,3,6,6-tetramethyl-2-[(trimethylsilyl)oxy]cyclohex-1-en-1-yl}oxy)silane, 11
[0110] The synthesis of Trimethyl({3,3,6,6-tetramethyl-2-[(trimethylsilypoxy]cyclohex-1-en-1-yl}oxy)silane, 11 is illustrated in
1.1.9 Synthesis of 3,3,6,6-tetramethylcyclohexane-1,2-dione, 12
[0111] The synthesis of 3,3,6,6-tetramethylcyclohexane-1,2-dione is illustrated in
1.1.10 Synthesis of methyl 5,5,8,8-tetramethyl-5,6,7,8-tetrahydroquinoxaline-2-carboxylate, 13
[0112] The synthesis of methyl 5,5,8,8-tetramethyl-5,6,7,8-tetrahydroquinoxaline-2-carboxylate, 13 is illustrated in
[0113] 1.1.11 Synthesis of (5,5,8,8-Tetramethyl-5,6,7,8-tetrahydroquinoxalin-2-yl)methanol, 14
[0114] The synthesis of (5,5,8,8-Tetramethyl-5,6,7,8-tetrahydroquinoxalin-2-yl)methanol, 14 is illustrated in
1.1.12 Synthesis of 5,5,8,8-Tetramethyl-5,6,7,8-tetrahydroquinoxaline-2-carbaldehyde, 15
[0115] The synthesis of 5,5,8,8-Tetramethyl-5,6,7,8-tetrahydroquinoxaline-2-carbaldehyde, 15 is illustrated in
1.1.13 Synthesis of Dimethyl 1-diazo-2-oxopropylphosphonate, 16
[0116] The synthesis of Dimethyl 1-diazo-2-oxopropylphosphonate, 16 is illustrated in
1.1.14 2-Ethynyl-5,5,8,8-tetramethyl-5,6,7,8-tetrahydroquinoxaline, 17
[0117] The synthesis of 2-Ethynyl-5,5,8,8-tetramethyl-5,6,7,8-tetrahydroquinoxaline, 17 is illustrated in
1.2 Synthesis of 3-Fluoro-4-[2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethynyl]benzoic acid, DC526
[0118] The synthesis of exemplary compound DC526 is illustrated in
[0119] Et.sub.3N (80 mL) was degassed by sparging with N.sub.2 for 1 hour. Compound 1 (0.80 g, 2.55 mmol), compound 6 (0.54 g, 3.05 mmol), Pd(PPh.sub.3).sub.2Cl.sub.2 (179 mg, 0.255 mmol) and CuI (49 mg, 0.255 mmol) were then added under N.sub.2 and the resultant suspension was stirred at room temperature for 72 hours. The suspension was diluted with MTBE and passed through Celite®/SiO.sub.2 and the extracts were evaporated to a give a crude solid (1.1 g). This was purified by dry column vacuum chromatography (100% heptane, to 95:5, heptane/EtOAc) to give compound 7 as a colourless oil which slowly crystallised (0.82 g, 88%), which was carried directly to the next step. Compound 7 (0.80 g, 2.20 mmol) was dissolved in THF (40 mL), 20% NaOH (3 mL) added, and the resultant solution was stirred at reflux for 16 hours. The mixture was cooled, acidified to pH 1 with 5% HCl, extracted with EtOAc, washed with H.sub.2O and brine, dried (MgSO.sub.4) and evaporated to give a crude white solid which was recrystallised from Acetonitrile (MeCN) to give DC526 as a colourless crystalline solid (0.60 g, 77%): .sup.1H NMR (600 MHz, DMSO-d.sub.6) 1.24 & 1.26 (s, 12H), 1.64 (s, 4H), 7.32 (dd, J=8.1, 1.8 Hz, 1H), 7.40 (d, J=8.2 Hz, 1H), 7.53 (d, J=1.8 Hz, 1H), 7.70 7.78 (m, 2H), 7.80 (dd, J=7.9, 1.6 Hz, 1H), 13.44 (br, 1H); .sup.13C NMR (151 MHz, DMSO-d.sub.6) δ 31.3, 31.4, 33.9, 34.1, 34.2, 34.3, 81.0, 97.4 (d, J=3.1 Hz), 115.2, 115.3 (d, J=15.8 Hz), 116.0 (d, J=22.3 Hz), 118.5, 125.4 (d, J=3.4 Hz), 127.1, 128.7, 129.6, 132.7 (d, J=7.1 Hz), 133.6, 145.2, 146.5, 161.4 (d, J=250.3 Hz), 165.7 (d, J=2.5 Hz); .sup.19F NMR (376 MHz, DMSO-d.sub.6) δ −110.0; IR (ATR) ν.sub.max/cm.sup.−1 2967m, 2928m, 2857m, 2210w, 1686s, 1617m, 1566m, 1421m, 1307m, 1218m, 834s, 764m; MS(ASAP): m/z=351.2 [M+H].sup.+; HRMS (ASAP) calcd. for C.sub.23H.sub.24O.sub.2F [M+H].sup.+: 351.1760, found 351.1766.
1.3 Synthesis of 5-[2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)ethynyl]pyridine-2-carboxylic acid, DC528
[0120] The synthesis of exemplary compound DC528 is illustrated in
1.4 Synthesis of Methyl 4-[2-(5,5,8,8-tetramethyl-5,6,7,8-tetrahydroquinoxalin-2-yl)ethynyl]benzoate, DC641
[0121] The synthesis of exemplary compound DC641 is illustrated in
[0122] 1.5 Synthesis of 4-[2-(5,5,8,8-Tetramethyl-5,6,7,8-tetrahydroquinoxalin-2-yl)ethynyl]benzoic acid, DC645
[0123] The synthesis of exemplary compound DC645 is illustrated in
EXAMPLE 2: BIOLOGICAL EVALUATION
2.1 Genomic Activity of Synthetic Retinoids
[0124] The genomic activity of synthetic retinoids was evaluated by determining their efficiency of inducing transcription using the X-Gal Assay. The X-Gal Assay utilizes Sil-15 reporter cells in which the transcription of the LacZ gene is under control of a promoter linked to a retinoic acid response element (RARE). After treatment of the reporter cells with retinoids, the ability of the compounds to induce transcription can be attained by monitoring and quantifying the activity of β-galactosidase produced by the reporter cells.
[0125] Sil-15 cells were plated at 100,000 cells per well in 96-well plates coated in 0.1% gelatin. The following day, serial dilutions of retinoid ligands, prepared in Dulbecco's Modified Eagle's Medium (DMEM) containing 10% foetal calf serum (FCS) were added at concentrations from 10.sup.−6 M to 10.sup.−14 M and the plates were incubated overnight. All concentrations for the ATRA standard curve and the other retinoid ligands were tested in triplicate.
[0126] The next day, the assay plates were washed twice with phosphate buffered saline (PBS), fixed with 100 μl per well of 1% glutaraldehyde and 1 mM MgCl.sub.2 in PBS for 15 minutes and washed twice with PBS. β-galactosidase activity was detected by the addition of 100 μl of freshly-prepared 0.2% X-Gal in 1 mM MgCl.sub.2, 3.3 mM potassium ferricyanide and 3.3 mM potassium ferrocyanide in PBS per well. Plates were incubated for 6 hours at 37° C. in 5% CO.sub.2 and colour change was detected by reading the plates at 650 nm on an Emax Precision Microplate Reader (Molecular Devices).
[0127] The resulting data, as shown in Table 1 and illustrated in
2.2 Non-Genomic Activity of Synthetic Retinoids
[0128] The non-genomic activity of synthetic retinoids was evaluated by measuring their ability to induce phosphorylation of ERK1/2 using the AlphaLISA® SureFire® Ultra ERK1/2 kit.
[0129] In this assay, SH-SY5Y cells (100,000 cells/well) were plated in 96-well plates and serum-starved in DMEM for 24 hours. Retinoids were tested at concentrations from 10-5 M to 10-11 M and at a final concentration of 0.1% DMSO in the medium. The assay was carried out on the SH-SY5Y cells in serum-free DMEM, cells were stimulated by retinoid for 30 minutes at 37° C.
[0130] At the end of the assay, the medium was removed, and cells were lysed in 50 μl of freshly prepared 1× lysis buffer (supplied in the kit). The 96-well plate was agitated on an orbital shaker (SO1, Stuart Scientific) at approximately 350 rpm for 10 minutes at room temperature.
[0131] In the meantime, the activation buffer was diluted 25-fold in the reaction buffers. Under green light in a dark room, the acceptor beads were diluted 50-fold in the freshly prepared reaction mix while the donor beads were diluted 50-fold in dilution buffer to obtain two final reaction mixtures.
[0132] 10 μl of cell lysate was then transferred per well into 384-well white Proxiplates plates (PerkinElmer) and 5 μl of each prepared acceptor and donor reaction mixture was added under green light in a dark room. Plates were wrapped with aluminium foil and incubated at room temperature for at least 3 hours. Readings were taken using an Envision system (PerkinElmer Life Sciences) using the AlphaScreen® settings.
[0133] The results, shown in Table 1 and illustrated in
2.3 Induction of Neurite Outgrowth
[0134] SY-SY5Y cells were plated at 10,000 cells/well in 12-well plates containing acid-treated/poly-L-lysine-coated coverslips. After 24 hours, each retinoid was added to the medium at a concentration of 10 nM and the plates were incubated for 5 days. After retinoid treatment, SH-SY5Y cells on coverslips were washed twice in PBS, fixed in 4% paraformaldehyde (PFA) for 20 minutes at room temperature, and washed twice with PBS.
[0135] For immunocytochemical staining of neurites, cells on coverslips were washed three times in PBS, and incubated in blocking solution (10% donkey serum and 0.1% triton X-100 in PBS) for 1 hour at room temperature. Cells were then labelled by incubation overnight at 4° C. with β-III tubulin primary antibody (Sigma-Aldrich) diluted 1:1000 in blocking buffer. Following incubation overnight, cells were washed three times with PBS containing 0.1% Triton X-100 solution (PBST) before incubation with anti-mouse monoclonal secondary antibody (1:300 in PBST; Jackson Immunoresearch) for 2 hours at room temperature. Finally, after three washes in PBST and a final wash in PBS, the coverslips were mounted on slides and stored at 4° C.
[0136] ImageJ software with the NeuronJ plugin was used to quantify neurite outgrowth on stained cells. For each experiment, 10 different randomly selected images were taken from each cover slip using a Nikon Eclipse E400 fluorescence microscope. Each image was converted into an 8-bit image (necessary for the NeuronJ plugin) and optimised with the brightness and contrast tool in GIMP (GNU Image Manipulation Program). For each image, individual traces were drawn for each clearly-identifiable neurite using the tracing tool in the NeuronJ plugin. Neurite length was measured in pixels and transformed into the corresponding length in μm depending on the magnification used. The average neurite length for each image was calculated by dividing total neurite length by the total number of neurites per image. Ten images per cover slip were measured and the mean calculated for the coverslip overall. Coverslips were in triplicate for each retinoid and concentration.
[0137] Data shown in
[0138] Table 1 below summarises the genomic (transcriptional activity) and non-genomic activity (p-ERK ½ activity) for the retinoid compounds tested, along with increase in neurite outgrowth, and these results were plotted in
TABLE-US-00001 TABLE 1 Genomic activity, non-genomic activity and neurite outgrowth Genomic Activity (X-Gal Non-genomic activity (ERK½ Neurite RA Based Reporter Assay) Phosphorylation Assay) Outgrowth Potency (EC.sub.50) nM Efficacy (E.sub.max) Potency (EC.sub.50) nM Efficacy (E.sub.max) Fold increase Compound (95% Cl) (95% Cl) (95% Cl) (95% Cl) (10 nM) ATRA 1.044 170.1 33.07 48.55 1.4 (83.96 to 1.291) (164.4 to 175.7) (23.76 to 44.85) (46.72 to 50.42) EC23 0.1279 169.18 31.75 91.93 2.2 (0.08006 to 0.2033) (159.1 to 180.7) (20.21 to 49.83) (86.3 to 100.29) DC527 0.003475 209.8 30.55 92.51 1.9 (0.002472 to 0.004869) (201.4 to 218.3) (19.47 to 48.53) (85.7 to 99.62) DC540 0.01504 185.3 159.4 79.73 1.7 (0.01203 to 0.01888) (180.4 to 190.2) (117.7 to 215.5) (75.14 to 84.46) DC525 0.2103 190 2.491 42.44 1.9 (0.1505 to 0.2952) (181.9 to 198.3) (1.966 to 3.152) (40.92 to 43.98) DC528 0.146 206.5 14.22 69.15 2.2 (0.06294 to 0.3296) (187.3 to 226.2) (9.415 to 21.28) (65.02 to 73.35) DC526 0.05807 149.1 26.35 50.22 2.1 (0.02068 to 0.1292) (134.2 to 164) (19.51 to 35.49) (47.4 to 53.09) DC564 5.31 177.1 18.07 44.46 1.3 (3.966 to 7.03) (168.1 to 186.3) (9.765 to 35.5) (40.82 to 48.35) DC559 1.379 139.8 15.66 40.68 1.4 (81.11 to 2.297) (127.8 to 151.9) (12.25 to 20.1) (39.24 to 42.15) DC567 13.57 97.21 18.07 44.46 1.6 (8.721 to 21.17) (89.5 to 105.3) (9.765 to 35.5) (40.82 to 48.35) DC712 0.3818 179.7 6.349 94 1.2 (0.3011 to 0.4824) (173.1 to 186.3) (46.62 to 84.46) (89.63 to 98.43) DC657 0.1463 154.9 3.496 72.45 1.4 (0.08618 to 0.2479) (144.4 to 165.5) (2.147 to 5.656) (68.39 to 76.62) DC667 0.1336 169.8 4.849 44.3 1.4 (0.09097 to 0.1948) (160.5 to 179.2) (2.969 to 7.672) (41.6 to 47.05) DC707 0.8256 192.2 4.323 44.87 1.2 (0.5211 to 1.266) (179.6 to 205) (2.302 to 7.727) (41.83 to 47.98) DC645 0.06965 185.9 8.538 91.57 2.3 (0.05443 to 0.08835) (180.2 to 191.6) (6.708 to 10.75) (88.37 to 94.79) DC529 3.891 174 30.37 28.85 1.3 (2.935 to 5.117) (165.8 to 182.3) (21.26 to 43.1) (27.3 to 30.44) DC706 603.2 265.9 90.8 36.87 1.3 (409.4 to 1022) (228.8 to 339.2) (58.85 to 138.4) (34.15 to 39.68) DC661 0.2701 171.4 2.004 53.91 1.6 (0.2064 to 0.3532) (165.3 to 177.5) (1.39 to 2.93) (51.5 to 56.36) DC646 3.159 176.3 143.5 77.63 1.7 (2.385 to 4.169) (167.8 to 184.9) (117.8 to 174.9) (74.75 to 80.58) DC656 0.4274 177.2 501.6 56.77 1.6 (0.335 to 0.5427) (170.6 to 183.9) (260.3 to 854.2) (50.45 to 63.47)
2.4 Regulation of Alzheimer's Disease Related Genes
[0139] To examine the influence retinoids may have on the expression of genes involved in Alzheimer's disease, the expression of a group of Alzheimer's-related genes in rat mixed primary neuronal/glial cultures was assessed following retinoid treatment.
[0140] Approximately 300,000 rat neuronal/glial cells were treated first with 1 μg/ml lipopolysaccharide (Sigma-Aldrich) for 6 hours to induce inflammation. Following the induction of inflammation, cells were treated with 10 nM retinoids for 24 hours. The retinoids which proved most potent in previous assays were selected for use in these experiments. Following treatment, RNA was extracted from the treated cells for qPCR analysis.
[0141] Total RNA was extracted using a Qiagen RNeasy mini kit (CAT # 74104, Qiagen) according to the manufacturer's protocol. Briefly, cell and brain tissue samples were homogenized in 350 μl and 1200 μl of RLT buffer mixed with β-ME (1 ml buffer: 10 μl β-ME ratio) respectively. Then, samples were centrifuged for 3 min at 13,000 rpm. The supernatant was first mixed with 70% ethanol at a 1:1 volume ratio (CAT # E7023, Sigma-Aldrich) before transferring it to a spin column placed in a collection tube. The samples were centrifuged for 1 min at 10,000 rpm to bind RNA to the membrane of the spin column.
[0142] For the on-column DNase digestion, the samples in the columns were washed with 350 μl RW1 buffer and centrifuged at 10,000 rpm for 1 min. Then, 80 μl of the DNase mixture (10 μl DNase enzyme with 70 μl RDD buffer; CAT # 79254, Qiagen) was added above each sample. Samples were incubated at room temperature for 15 min before adding 350 μl RW1 buffer. Samples were centrifuged at 10,000 rpm for 1 min.
[0143] Afterwards, 500 μl of RPE buffer (mixed with 100% ethanol at 1:4 ratio) was added above the samples. Samples were centrifuged for 1 min at 10,000 rpm (the step was repeated 2 times). The spin columns were centrifuged again at 13,000 rpm for 1 min to dry the membranes. The spin columns were removed from the collection tubes and placed inside another 1.5 ml RNase free collection tubes. The RNA was eluted by adding 30 μl of RNase free water directly to the spin column membrane. The samples were incubated 5 min at room temperature before spinning them for 1 min at 10,000 rpm.
[0144] RNA concentration was measured using a NanoDrop™ 2000c spectrophotometer (Thermo Fisher Scientific). The instrument was calibrated using the RNase free water used to elute the RNA as a blank and 2 μl was used of each RNA sample. RNA samples were stored in a −70° C. freezer to minimize RNA degradation.
[0145] qPCR reactions were performed using PerfeCTa SYBR Green SuperMix (CAT # 733-1246, VWR). 10 μl of reaction mix was added to each well of a 384-well plate (CAT # 04729749001, Roche) in triplicate. Each reaction contained 2 μl of 4 times diluted cDNA template, 5 μl 2×SYBR green mix and 250 nM primers.
[0146] Primers were designed using Primer-BLAST with melting temperatures of about 60° C. Before using them in qPCR, the primers were checked for specificity by PCR and the PCR products were sent for sequencing.
[0147] Standard curves (made using 5-fold dilutions of the stock cDNA) and blank controls were run for all sets of primers tested in qPCR. The plates were then sealed and centrifuged briefly to ensure all the reagents were at the base of the wells. The plates were run on a Roche LightCycler 480 that was programmed to hold the plate at 95° C. for 5 min. The qPCR then ran for 45 cycles of 95° C. for 15 seconds (s), 60° C. for 15 s and 72° C. for 15 s. Afterwards, the melting curve was obtained by running the plate at 95° C. for 5 s followed by 58° C. for 1 min.
[0148] Results were analysed using the delta delta CT method within the LightCycler 480 1.5 software. The expression of genes of interest was normalized to the appropriate reference gene according to each experiment.
[0149] The data shown in
EXAMPLE 3: MDCK-MDR1 PERMEABILITY ASSAY
[0150] This assay is used to measure the permeability of test compound in the apical to basolateral (A-B) and basolateral to apical (B-A) direction across MDCK-MDR1 cells and to determine the efflux ratio (ER), which shows whether the compound undergoes active efflux. Thus, this assay is a valuable in vitro surrogate for blood-brain permeability and CNS exposure
3.1 Experimental Procedure
[0151] MDCK-MDR1 cells obtained from the NIH (Rockville, Md., USA) are used between passage numbers 6-30. Cells are seeded onto Millipore Multiscreen Transwell plates at 3.4×10.sup.5cells/cm.sup.2. The cells are cultured in DMEM and media is changed on day 3. On day 4 the permeability study is performed. Cell culture and assay incubations are carried out at 37° C. in an atmosphere of 5% CO.sub.2 with a relative humidity of 95%. On the day of the assay, the monolayers are prepared by rinsing both apical and basolateral surfaces twice with Hanks Balanced Salt Solution (HBSS) at the desired pH warmed to 37° C. Cells are then incubated with HBSS at the desired pH in both apical and basolateral compartments for 40 min to stabilise physiological parameters. The dosing solutions are prepared by diluting test compound with assay buffer to give a final test compound concentration of 10 μM. Analytical standards are prepared from test compound DMSO dilutions and transferred to buffer, maintaining a 1% v/v DMSO concentration; buffer is composed of supplemented HBSS pH 7.4. For assessment of A-B permeability, HBSS is removed from the apical compartment and replaced with test compound dosing solution. The apical compartment insert is then placed into a companion plate containing fresh buffer (containing 1% v/v DMSO). For assessment of B-A permeability, HBSS is removed from the companion plate and replaced with test compound dosing solution. Fresh buffer (containing 1% v/v DMSO) is added to the apical compartment insert, which is then placed into the companion plate. At 60 min the apical compartment inserts and the companion plates are separated and apical and basolateral samples diluted for analysis. Test compound permeability is assessed in duplicate. Compounds of known permeability characteristics are run as controls on each assay plate. Test and control compounds are quantified by LC-MS/MS cassette analysis using a 7-point calibration with appropriate dilution of the samples. The starting concentration (C.sub.0) is determined from the dosing solution and the experimental recovery calculated from C.sub.0 and both apical and basolateral compartment concentrations.
3.2 Data Analysis
[0152] The permeability coefficient (P.sub.app) for each compound is calculated from the following equation:
[0153] Where dQ/dt is the rate of permeation of the drug across the cells, C.sub.0 is the donor compartment concentration at time zero and A is the area of the cell monolayer. C.sub.0 is obtained from analysis of the dosing solution. An efflux ratio (ER) is calculated from mean A-B and B-A data. This is derived from:
3.3. Biological Study
[0154] The membrane permeability of a number of compounds of Formula I were measured in the MDCK-MDR1 assay described previously. The permeability (P.sub.app, nm/s) and efflux ratio (ER) for compounds was determined and compared with those for the closely-related reference compound EC23. The results are summarised in Table 2:
TABLE-US-00002 TABLE 2 Permeability and efflux ratio of compounds of formula I, versus reference compound EC23. Papp Compound/Structure (nm/s) ER EC23
[0155] The results shown in Table 2 demonstrate that some compounds of Formula (I) can show considerable improvements in permeability and lack of efflux in the MDCK-MDR1 assay and, thus, can be expected to show considerable improvements in blood brain barrier penetration and CNS exposure. As treatment of CNS disorders, including ALS and Alzheimer's disease, requires exposure of CNS targets to sufficiently-high concentrations of therapeutic agent, it is clear that optimal CNS exposure is an essential characteristic in a drug for the treatment of these disorders. Thus, investigated compounds of Formula (I) show significantly improved drug-like characteristics compared to the literature compound EC23. This improvement in CNS exposure represents a surprising and unexpected discovery.
EXAMPLE 4: TURBIDIMETRIC AQUEOUS SOLUBILITY
Example 4.1 Experimental Procedure
[0156] Test compound (10 mM in DMSO) is serially diluted to give solutions of 0.1, 0.3, 1 and 3 mM in DMSO. Each test compound concentration is then further diluted 1 in 100 in buffer (0.01 M phosphate buffered saline pH 7.4) so that the final DMSO concentration was 1% and the final test compound concentrations were 1, 3, 10, 30 and 100 μM. The experiment was performed at 37° C. and each concentration sample was incubated in 7 replicate wells. The plates were incubated for 2 hr at 37° C. before the absorbance was measured at 620 nm. The solubility of the sample was estimated from the concentration of test compound that produced an increase in absorbance above vehicle control (i.e., 1% DMSO in buffer).
4.2 Biological Study
[0157] The solubility of a number of compounds of the Formula (I) were measured in the turbidimetric aqueous solubility assay described previously. The solubility for compounds was determined and compared with those for the closely-related reference compound EC23. The results are summarised in Table 3:
TABLE-US-00003 TABLE 3 Solubility of compounds of formula I, versus reference compound EC23. Compound/Structure μM EC23
[0158] The results shown in the above table demonstrate that compounds of Formula I can show considerable improvements in solubility and, thus, can also be expected to show considerable improvements in a number of biological properties, including absorption and target exposure. Again, this represents a surprising and unexpected discovery.
[0159] It will be understood that where, throughout the description, compounds are described for use in the treatment of a condition or disease which is alleviated by the activation of retinoic acid receptors (RAR), that this represents a disclosure of these compounds per se.
[0160] All of the features disclosed in this specification (including any accompanying claims, abstract and drawings), and/or all of the steps of any method or process so disclosed, may be combined in any combination, except combinations where at least some of such features and/or steps are mutually exclusive. Each feature disclosed in this specification (including any accompanying claims, abstract and drawings) may be replaced by alternative features serving the same, equivalent or similar purpose, unless expressly stated otherwise. Thus, unless expressly stated otherwise, each feature disclosed is one example only of a generic series of equivalent or similar features. The invention is not restricted to the details of the foregoing embodiment(s). The invention extends to any novel one, or any novel combination, of the features disclosed in this specification (including any accompanying claims, abstract and drawings), or to any novel one, or any novel combination, of the steps of any method or process so disclosed.
[0161] With respect to the use of substantially any plural and/or singular terms herein, those having skill in the art can translate from the plural to the singular and/or from the singular to the plural as is appropriate to the context and/or application. The various singular/plural permutations may be expressly set forth herein for sake of clarity.
[0162] It will be understood by those within the art that, in general, terms used herein, and especially in the appended claims are generally intended as “open” terms (e.g., the term “including” should be interpreted as “including but not limited to,” the term “having” should be interpreted as “having at least,” the term “includes” should be interpreted as “includes but is not limited to,” etc.). It will be further understood by those within the art that if a specific number of an introduced claim recitation is intended, such an intent will be explicitly recited in the claim, and in the absence of such recitation no such intent is present. For example, as an aid to understanding, the following appended claims may contain usage of the introductory phrases “at least one” and “one or more” to introduce claim recitations.
[0163] However, the use of such phrases should not be construed to imply that the introduction of a claim recitation by the indefinite articles “a” or “an” limits any particular claim containing such introduced claim recitation to embodiments containing only one such recitation, even when the same claim includes the introductory phrases “one or more” or “at least one” and indefinite articles such as “a” or “an” (e.g., “a” and/or “an” should be interpreted to mean “at least one” or “one or more”); the same holds true for the use of definite articles used to introduce claim recitations. In addition, even if a specific number of an introduced claim recitation is explicitly recited, those skilled in the art will recognize that such recitation should be interpreted to mean at least the recited number (e.g., the bare recitation of “two recitations,” without other modifiers, means at least two recitations, or two or more recitations).
[0164] It will be appreciated that various embodiments of the present disclosure have been described herein for purposes of illustration, and that various modifications may be made without departing from the scope of the present disclosure. Accordingly, the various embodiments disclosed herein are not intended to be limiting, with the true scope being defined by the following claims.