Trimethylglycylglycerin compositions and their use in developing anti-cancer drugs and RNA vaccines
11326164 · 2022-05-10
Inventors
- Shi-Lung Lin (Arcadia, CA)
- Samantha CHANG-LIN (Arcadia, CA, US)
- Chin-Tsyh Donald Chang (Cerritos, CA, US)
Cpc classification
A61K39/215
HUMAN NECESSITIES
A61K39/21
HUMAN NECESSITIES
A61K39/39
HUMAN NECESSITIES
A61K39/292
HUMAN NECESSITIES
C12N15/113
CHEMISTRY; METALLURGY
A61K39/00
HUMAN NECESSITIES
C12N2320/32
CHEMISTRY; METALLURGY
C12N15/111
CHEMISTRY; METALLURGY
C07H21/00
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
A61K47/00
HUMAN NECESSITIES
C12N15/113
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
A61K39/215
HUMAN NECESSITIES
A61K47/51
HUMAN NECESSITIES
A61K47/50
HUMAN NECESSITIES
A61K39/39
HUMAN NECESSITIES
A61K39/21
HUMAN NECESSITIES
Abstract
This invention generally relates to a group of novel chemical compositions and their use for formulating RNA- and/or DNA-based medicine drugs/vaccines into stable compound complexes useful for both in-vitro and in-vivo delivery. Particularly, the present invention teaches the synthesis of a group of novel trimethylglycyl chemicals and their use for formulating cosmetic, therapeutic- and/or pharmaceutical-grade nucleic acid compositions, including but not limited microRNA precursors (pre-miRNA/miRNA), small hairpin RNAs (shRNA), short interfering RNAs (siRNA), ribozymes, antisense oligonucleotides, RNA-DNA hybrids and DNA-based vectors/vaccines, with or without modification, into delivery complexes, which can then be absorbed by cells in vivo, ex vivo and/or in vitro through an active mechanism of endocytosis via acetylcoline receptors for releasing the therapeutic and pharmaceutical effects of the formulated nucleic acid compositions.
Claims
1. A composition for formulating nucleic acid compositions with sugars and sugar alcohols into stable complexes for in-vitro, ex vivo and in-vivo delivery into mammalian cells, comprising: (a) at least a nucleic acid composition with at least a negative charge; and (b) at least a sugar or sugar alcohol composition modified by trimethylglycylation, wherein (a) and (b) are mixed together under a condition to form at least a delivery complex, wherein said delivery complex is delivered into mammalian cells via acetylcholine receptors.
2. The composition as defined in claim 1, wherein said nucleic acid composition is small hairpin RNAs.
3. The composition as defined in claim 1, wherein said sugar or sugar alcohol composition is glycerin (glycerol).
4. The composition as defined in claim 1, wherein said trimethylglycylation is a chemical reaction that replaces the hydroxyl (HO—) groups of a sugar alcohol or sugar with betaine's trimethylglycyl [(CH.sub.3).sub.3N.sup.+CH.sub.2COO—] groups and thus results in the formation of an ether (R—O—R) linkage between each OH-removed carbon of the sugar/sugar alcohol and the trimethylglycyl group.
5. The composition as defined in claim 1, wherein said sugar or sugar alcohol composition after modified by trimethylglycylation forms mono-trimethylglycylglycerins (mono-TMGG; C.sub.8H.sub.18O.sub.4N.sub.1 MW=190˜193g/mole), di-trimethylglycylglycerin (di-TMGG; C.sub.13H.sub.28O.sub.5N.sub.2 MW=290˜293g/mole), and/or tri-trimethylglycylglycerin (tri-TMGG; C.sub.18H.sub.38O.sub.6N.sub.3 MW=390˜393 g/mole).
6. The composition as defined in claim 1, wherein said sugar or sugar alcohol composition is capable of protecting said nucleic acid compositions from degradation.
7. The composition as defined in claim 1, wherein said sugar or sugar alcohol composition is capable of enhancing the delivery efficiency of said nucleic acid compositions into mammalian cells via acetylcholine receptors in vitro, ex vivo and in vivo.
8. The composition as defined in claim 1, wherein said condition is incubation at a temperature equal or larger than 75° C. and at a pressure equal or higher than 100 kPa.
9. The composition as defined in claim 8, wherein said condition is incubation at a temperature about 100° C. to 160° C. and at a pressure about 101 to 250 kPa.
10. The composition as defined in claim 1, wherein said delivery complex is formed by the ionic or electrostatic affinity occurring between the modified sugar or sugar alcohol and the nucleic acid composition.
11. The composition as defined in claim 1, wherein said delivery complex is useful for therapeutic applications.
12. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is capable of forming trimethylglycyl-glycylglycerin mixtures.
13. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is capable of forming polymers with glycylglycerins and amino acids.
14. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol contains at least a trimethylglycyl [(CH.sub.3).sub.3N.sup.+CH.sub.2COO—] group that structurally resembles acetylcholine.
15. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is capable of interacting with acetylcholine receptors.
16. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is capable of being used to replace acetylcholine to stimulate or inhibit acetylcholine receptors.
17. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is useful for developing therapeutic applications and devices.
18. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is useful for formulating nucleic acid-based compositions into medicine drugs.
19. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is useful for formulating nucleic acid-based medicines for treating respiratory diseases and infections.
20. The composition as defined in claim 1, wherein said modified sugar or sugar alcohol is useful for formulating small hairpin RNAs into vaccines for treating viral infection.
21. The composition as defined in claim 20, wherein said formulated small hairpin RNAs vaccines induce RNAi effects.
22. The composition as defined in claim 1, wherein said nucleic acid composition induce immune responses to generate antibodies directed against viruses.
23. The composition as defined in claim 22, wherein said viruses are RNA viruses.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) Referring particularly to the drawings for the purpose of illustration only and not limitation, there is illustrated:
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EXAMPLES
(21) In the experimental disclosure which follows, the following abbreviations apply: M (molar); mM (millimolar); μm (micromolar); mol (moles); pmol (picomoles); gm (grams); mg (milligrams); μg (micrograms); ng (nanograms); L (liters); ml (milliliters); μl (microliters); ° C. (degrees Centigrade); RNA (ribonucleic acid); DNA (deoxyribonucleic acid); dNTP (deoxyribonucleotide triphosphate); PBS (phosphate buffered saline); NaCl (sodium chloride); HEPES (N-2-hydroxyethylpiperazine-N-2-ethanesulfonic acid); HBS (HEPES buffered saline); SDS (sodium dodecyl sulfate); Tris-HCl (tris-hydroxymethylaminomethane-hydrochloride); ATCC (American Type Culture Collection, Rockville, Md.); hESC (human embryonic stem cells); and iPSC (induced pluripotent stem cells).
(22) 1. MicroRNA (miRNA) Production and Isolation and siRNA Synthesis
(23) Dicer-negative cells were acquired from Zymo Research (Irvine, Calif.), transduced with a pre-made miR-302 expression lentiviral vector pLenti-EF lalpha-RGFP-miR302 (Mello Biotech, Santa Fe Springs, Calif.), and maintained according to manufacturers' suggestions. MicroRNAs and microRNA precursors were isolated with a mirVana™ miRNA isolation kit (Ambion, Austin, Tex.), following the manufacturer's protocol. The isolated miRNAs (for example, pre-miR-302) were dissolved in autoclaved 1× Tris buffer at a concentration up to 5 mg/mL and stored at −80° C. till use. For stability tests with HPLC, a desired amount of the isolated RNAs was re-collected with an Amicon Ultra-0.5 mL 30K filter column (Millipore, Billerica, Mass.) and re-dissolved in autoclaved normal saline. For siR-302 preparation, synthetic miR-302 mimics were purchased from Sigma-Genosys (St. Louis, Mo.), containing two cyanine 5.5 (Cy5.5)-labeled RNA sequences: 5′-Cy5.5-UAAGUGCUUC CAUGUUUUAG UGU-3′ (SEQ.ID.NO.4) and 5′-Cy5.5-ACACUAAAAC AUGGAAGCAC UUA-3′ (SEQ.ID.NO.5). In experiments, siR-302 was formed by the hybrids of SEQ.ID.NO.4 and SEQ.ID.NO.5.
(24) 2. Trimethylglycylation of Sugar Alcohols and Formulation of miRNA/shRNA/siRNA
(25) Although the natural way of sugar/sugar alcohol glycylation is unclear, we have developed a chemical procedure to artificially make glycylated sugar alcohols and sugars. First, a pre-made base solution was prepared, containing 0˜5.0M, preferably 0.1˜2.0M glycerin (glycerol) and/or other substitutive sugar alcohols, such as xylitol and erythritol, and/or 0˜1.0M fructose/glucose (optional), and/or about 0.45%˜0.90% NaCl (w/v; optional) at around pH2.5˜pH8.0, depending on the source and amount of sugar alcohol(s) used. For activating trimethylglycylation, about 0.01˜10.0M, preferably 0.5˜5.0M, of USP-grade betaine (TMG) and 0˜2.0M glycine were added and mixed into the pre-made base solution, depending on the desired concentration and type(s) of final trimethylglycylated (TMG) and/or trimethylglycylated-(TMG)-glycylated-mixed sugar alcohol products. The final trimethylglycylated (TMG) sugar alcohol products may include mono-trimethyl-glycyl-glycerin (mono-TMGG; C.sub.8H.sub.18O.sub.4N.sub.1;
(26) 3. Human Cell Culture and Transfection
(27) Human lung epithelial cell line and lung cancer cell lines were purchased from ATCC and cultivated according to manufacturer's protocols at 37° C. under 5% CO.sub.2. Cells were passaged at about 50%-70% confluence by exposing the cells to trypsin/EDTA for about 1 min and then rinsing two times in HBSS containing trypsin inhibitor. The detached cells were replated at 1:5 dilutions in fresh EpiLife medium with HKGS supplements. For miRNA transfection, pri-/pre-miR-302 prepared from Example 1 was dissolved in 0.01˜5.0M, preferably 0.1˜2.0M, of TMGG solution at a desired concentration up to 5 mg/ml and then directly applied to cell culture medium based on the miRNA amount needed. For example, to deliver 200 pri-/pre-miR-302, we would need to add 40 μl of the TMGG-dissolved pri-/pre-miR-302 (at 5 mg/ml) into the cell culture medium and then mix well with the cells. Since TMGG is extremely safe and non-toxic, the tested cells could be cultivated in 0.01˜3.0M TMGG, preferably 0.1˜1.0M TMGG, with all necessary supplements and still not showing any adverse effect up to 48 hours.
(28) 4. High Performance Liquid Chromatography (HPLC) Analysis
(29) A reverse-phase HPLC method was developed for analyzing the purity and structural integrity of miR-302 and its precursors (i.e. pre-miR-302s). HPLC programs were run by an Ultimate 3000 HPLC machine (Thermo Scientific) with a DNA Pac PA-100 column (BioLC Semi-Prep 9×250 mm) at a flow rate of 3.6 ml/min. Starting buffer was 50 mM Tris-HCl (pH7.6) and mobile buffer was 50 mM Tris-HCl (pH7.6) with 500 mM sodium perchlorate. Signals of RNAs and DNAs were measured with an UV detector at 260 nm.
(30) 5. MicroRNA (miRNA) Microarray Analysis
(31) At about 70% confluency, small RNAs from each cell culture were isolated, respectively, using the mirVana™ miRNA isolation kit (Ambion). The purity and quantity of the isolated RNAs were assessed, using 1% formaldehyde-agarose gel electrophoresis and spectrophotometer measurement (Bio-Rad), and then immediately frozen in dry ice and submitted to LC Sciences (San Diego, Calif.) for miRNA microarray analyses. Each microarray chip was hybridized with a single sample labeled with either Cy3 or Cy5 or a pair of samples labeled with Cy3 and Cy5, respectively. Background subtraction and normalization were performed as manufacturer's suggestions. For a dual sample assay, a p-value calculation was performed and a list of differentially expressed transcripts more than 3-fold (yellow-red signals) was produced.
(32) 6. Formulation Using TMGG and/or TMG-Glycylglycerin Delivery Agents
(33) For enhancing the in-vitro and in-vivo delivery of DNA/RNA-based drugs and/or vaccines, the nucleic acid drug or vaccine compositions were first dissolved in a proper amount of autoclaved ddH2O, normal saline, Tris buffer or TE buffer at their highest possible soluble concentrations and then directly mixed with the pre-prepared TMGG and/or TMG-glycylglycerin delivery agents to reach a proper concentration for the use in treatments. Different treatments may require different concentrations of the TMGG and/or TMG-glycylglycerin-formulated nucleic acid drugs or vaccines for the best therapeutic results. For example, for testing toxicity, we injected 200 μg of synthetic siR-302 (from Example 1) dissolved in 200 μl of 0.1˜2.0M, preferably 0.5˜1.0M, TMGG or TMG-MGG/TMG-DGG solution into each of C57BL/6J strain mice via tail vein injection. Approximately 24 hours post-injection, we sacrificed two mice for observing the TMGG- and/or TMG-MGG-/TMG-DGG-delivered siR-302 distribution in vivo. As these siR-302 molecules were labeled with infra-red fluorescent dye Cy5.5, we could directly observe their in-vivo distribution using a bio-imaging system and/or their fluorescent signals in mouse tissue sections under a fluorescent microscope.
(34) 7. In Vitro Lung Cancer Sensitivity to Drug Tests
(35) TMGG-, glycylglycerin- and TMG-glycylglycerin-formulated nucleic acid drugs can elicit the same RNAi effects to silence pathogenic genes (such as oncogenes and viral genes), but through different carrier-protein-mediated endocytosis mechanisms. For lung cancer therapy, since lung cancer cells carry abundant GLUT and acetylcholine (particularly nicotinic) receptors, all three delivery agents will provide almost the same delivery results and RNAi effects on the treated cancer cells. For example, as shown in
(36) 8. In Vivo Lung Cancer Therapy Trials
(37) After understanding the tumor suppression potency of our formulated pre-miR-302 drug (F6) on different human lung cancer cell types, we further analyzed its in-vivo therapeutic potency using an orthotopic lung cancer mouse model.
(38) In animal trials using in-vivo orthotopic lung cancer assays (
(39) In order to further evaluate the strong therapeutic effects of the F6 drug on metastatic lung adenocarcinoma, we reduced the treatment frequency of F6 solution in the in-vivo orthotopic lung cancer model (n=11 for both treatment groups and n=5 for control group). As shown in
(40) 9. Statistic Analysis
(41) Any change over 75% of signal intensity in the analyses of immunostaining, western blotting and northern blotting was considered as a positive result, which in turn is analyzed and presented as mean±SE. Statistical analysis of data was performed by one-way ANOVA. When main effects were significant, the Dunnett's post-hoc test was used to identify the groups that differed significantly from the controls. For pairwise comparison between two treatment groups, the two-tailed student t test was used. For experiments involving more than two treatment groups, ANOVA was performed followed by a post-hoc multiple range test. Probability values of p<0.05 was considered significant. All p values were determined from two-tailed tests.
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(43) TABLE-US-00001 SEQUENCE LISTING (1) GENERAL INFORMATION: (iii) NUMBER OF SEQUENCES: 5 (2) INFORMATION FOR SEQ ID NO: 1: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 23 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: duplex (D) TOPOLOGY: siRNA (ii) MOLECULE TYPE: RNA (A) DESCRIPTION: /desc = “synthetic” (iii) HYPOTHETICAL: YES (iv) ANTI-SENSE: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1: GUUGGUUGCC AUAACAAGUG UGC 23 (2) INFORMATION FOR SEQ ID NO: 2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 23 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: duplex (D) TOPOLOGY: siRNA (ii) MOLECULE TYPE: RNA (A) DESCRIPTION: /desc = “synthetic” (iii) HYPOTHETICAL: YES (iv) ANTI-SENSE: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: GAUAAAGGAG UUGCACCAGG UAC 23 (2) INFORMATION FOR SEQ ID NO: 3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 23 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: duplex (D) TOPOLOGY: siRNA (ii) MOLECULE TYPE: RNA (A) DESCRIPTION: /desc = “synthetic” (iii) HYPOTHETICAL: YES (iv) ANTI-SENSE: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3: CUACCGAAGA GCUACCAGAC GAA 23 (2) INFORMATION FOR SEQ ID NO: 4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 23 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: (ii) MOLECULE TYPE: RNA (A) DESCRIPTION: /desc = “synthetic” (iii) HYPOTHETICAL: YES (iv) ANTI-SENSE: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4: UAAGUGCUUC CAUGUUUUAG UGU 23 (2) INFORMATION FOR SEQ ID NO: 5: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 23 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: (ii) MOLECULE TYPE: RNA (A) DESCRIPTION: /desc = “synthetic” (iii) HYPOTHETICAL: YES (iv) ANTI-SENSE: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5: ACACUAAAAC AUGGAAGCAC UUA 23