MONOCLONAL ANTIBODIES SPECIFIC FOR THE PB2 ANTIGEN OF THE HUMAN INFLUENZA VIRUS (FLU), NUCLEOTIDE SEQUENCES, METHOD AND DIAGNOSTIC KIT FOR FLU INFECTION
20220119503 · 2022-04-21
Inventors
- Alexis Mikes KALERGIS PARRA (Las Condes, Santiago, CL)
- Susan Marcela BUENO RAMIREZ (Las Condes, Santiago, CL)
Cpc classification
G01N2469/10
PHYSICS
G01N33/543
PHYSICS
C07K2317/51
CHEMISTRY; METALLURGY
C07K2317/92
CHEMISTRY; METALLURGY
International classification
G01N33/543
PHYSICS
Abstract
Generation of monoclonal antibodies, or fragments thereof, that recognize the PB2 protein of the human influenza virus (Flu), where the monoclonal antibodies or fragments thereof, has a heavy chain variable region and light chain variable region. Furthermore, a diagnostic method is provided to detect Flu infections in biological samples of nasopharyngeal secretions, using monoclonal antibodies in diagnostic kit format.
Claims
1. A monoclonal antibody or an antigen-binding portion thereof that binds to human influenza virus (FLU) protein PB2 for use in detecting the presence and/or localization of the protein, wherein the antibody is selected from: i) an antibody comprising a light chain variable region where its CDR1 (CDR.sub.LC1) is defined according to SEQ ID NO: 1, its CDR2 (CDR.sub.LC2) is defined by SEQ ID NO: 2 and its CDR3 (CDR.sub.LC3) corresponds to SEQ ID NO: 3, and a heavy chain variable region where its CDR1 (CDR.sub.HC1) is defined according to SEQ ID NO: 4, its CDR2 (CDR.sub.HC2) is defined by SEQ ID NO: 5 and its CDR3 (CDR.sub.HC3) corresponds to SEQ ID NO: 6, or ii) an antibody comprising a light chain variable region where its CDR1 (CDR.sub.LC1) is defined according to SEQ ID NO: 7, its CDR2 (CDR.sub.LC2) is defined by SEQ ID NO: 8 and its CDR3 (CDR.sub.LC3) corresponds to SEQ ID NO: 9, and a heavy chain variable region where its CDR1 (CDR.sub.HC1) is defined according to SEQ ID NO: 10, its CDR2 (CDR.sub.HC2) corresponds to SEQ ID NO: 11 and its CDR3 (CDR.sub.HC3) corresponds to SEQ ID NO: 12, wherein said antibody can be used as detection or capture antibody.
2. A method to detect Flu virus in a biological sample comprising contacting the biological sample with the monoclonal antibody or an antigen-binding portion thereof that binds to Flu PB2 protein of claim 1 and detecting the binding of the antibody to antigen, thereby detecting the Flu virus in the sample.
3. The method to detect Flu virus in a biological sample according to claim 2, wherein the biological sample is selected from the group consisting of in vitro cells infected with Flu, nasal secretions, nasal washes, cerebrospinal fluid, pharyngeal secretions and/or bronchial washes or secretions.
4. The method to detect Flu virus in a biological sample according to claim 2, wherein an assay used to detect the binding of the antibody to antigen is selected from: ELISA, immunofluorescence, immunohistochemistry, immunochromatography, flow cytometry, cell sorter, immunoprecipitation and/or Western blot.
5. The method to detect Flu virus in a biological sample according to claim 2, wherein the antibody or an antigen-binding portion thereof is conjugated with a marker that allows its detection.
6. The method to detect Flu virus in a biological sample according to claim 5, wherein the antibody is bound to a marker selected from the group consisting of fluorophores, biotin, radioisotopes, metals and enzymes.
7. A kit for qualitative and/or quantitative detection of Flu virus comprising: a monoclonal antibody or an antigen-binding portion thereof that binds to PIV chimeric protein L according to claim 1, which acts as a capture or detection antibody, wherein detection antibody is conjugated to a marker for its detection; a solid support to which the antibody is attached; and reagents for detecting the marker included in the detection antibody, such as fluorophores, biotin, radioisotopes, metals, and enzymes.
8. The kit for qualitative and/or quantitative detection of Flu virus according to claim 7, wherein the solid support is a membrane formed by one of the compounds selected from the group consisting of nitrocellulose, cellulose, polyethylene and nylon.
9. The kit for qualitative and/or quantitative detection of Flu virus according to claim 7, wherein the detection of PIV is carried out with an immunochromatographic test, luminex, flow cytometry, immunofluorescence, radioimmunoanalysis, Western blot, Dot plot, ELISA, immunodiffusion or immunoprecipitation.
10. (canceled)
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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EXAMPLES THAT MAKE IT POSSIBLE TO DEMONSTRATE THE DIFFERENT APPLICATIONS OF THE MONOCLONAL ANTIBODIES OF THE INVENTION
Example 1: Determination of the Nucleotide Sequence Encoding the Light (VL) and Heavy (VH) Chains of the Variable Region of Flu Anti-PB2 Antibody Secreted by 1A3E2 Hybridoma
[0029] 1A3E2 hybridoma was grown in DMEM-high glucose culture medium supplemented with 3.7 g/L of Sodium Bicarbonate and 10% fetal bovine serum, at 37° C. (98.6° F.) with 10% CO.sub.2, up to a cell density of 700,000 cells/mL. Total RNA of 3.5×10.sup.6 cells was obtained, performing a treatment with Trizol compound (Invitrogen). 0.5 μg of RNA was used to generate the cDNA by reverse transcription reaction with the PrimeScript™ 1st Strand cDNA Synthesis kit, which uses isotype-specific universal primers. The antibody heavy and light chain were amplified according to the GenScript rapid amplification of cDNA ends (RACE) standard operating procedure (SOP). Amplified antibody fragments were separately cloned into a standard cloning vector. PCR colony was performed to identify clones which have the correct size inserts. At least five colonies with inserts of the correct size were sequenced for each fragment. Sequences of different clones were aligned and the consensus sequence of these clones was provided. Nucleotide sequences of heavy and light chains of antibodies secreted by 1A3E2 hybridoma were identified, being identified as SEQ ID NO. 1 and SEQ ID NO.3 for the case of heavy chains and SEQ ID NO. 2 and SEQ ID NO.4 for the case of light chains.
Example 2: Determination of the Nucleotide Sequence Encoding the Light (VL) and Heavy (VH) Chains of the Variable Region of Flu Anti-PB2 Antibody Secreted by 2F11B1 Hybridoma
[0030] 2F11B1 hybridoma was grown in DMEM-high glucose culture medium supplemented with 3.7 g/L of Sodium Bicarbonate and 10% fetal bovine serum, at 37° C. (98.6° F.) with 10% CO.sub.2, up to a cell density of 700,000 cells/mL. Total RNA of 3.5×10.sup.6 cells was obtained, performing a treatment with Trizol compound (Invitrogen). 0.5 μg of RNA was used to generate the cDNA by reverse transcription reaction with the PrimeScript™ 1st Strand cDNA Synthesis kit, which uses isotype-specific universal primers. The antibody heavy and light chain were amplified according to the GenScript rapid amplification of cDNA ends (RACE) standard operating procedure (SOP). Amplified antibody fragments were separately cloned into a standard cloning vector. PCR colony was performed to identify clones which have the correct size inserts. At least five colonies with inserts of the correct size were sequenced for each fragment. Sequences of different clones were aligned and the consensus sequence of these clones was provided. From this, nucleotide sequences of heavy and light chains of antibodies secreted by 2F11B1 hybridoma were determined, corresponding to those identified as SEQ ID NO. 1 and SEQ ID NO.3 to the light chains and sequences identified as SEQ ID NO. 1 and SEQ ID NO.3 to heavy chains.
Example 3: Flu Antigen Detection Assay, Specificity Determination of Flu Anti-PB2 Monoclonal Antibodies for Purified Flu Antigens by Indirect ELISA Assay
[0031] This assay aims to demonstrate the specificity for Flu PB2 protein antibodies produced by 1A3E2 and 2F11B1 hybridomas. Antigen detection was carried out using the indirect ELISA technique, where ELISA plate was activated with 50 ng of purified antigen for 1 hour at 37° C. (98.6° F.). Similarly, the plate was activated with 20 μg of uninfected MDCK cell lysate (as a negative control) and infected with Flu serotype A virus. Another negative control included was 50 ng of ADV pIII protein in a separate well. Subsequently, the plate was washed twice with 1×/Tween20 0.05% phosphate buffered saline (PBS). The plate was then blocked for 2 hours at 37° C. (98.6° F.) with 1×PBS/10% Fetal Bovine Serum (FBS). Subsequently, the washes were repeated and then each antibody (1A3E2 and 2F11B1) were incubated at a final concentration of 3.4 μg/mL (170 ng per well), diluted in 1×PBS/10% FBS, for 1 hour at 37° C. (98.6° F.) (each antibody on a separate plate). Under the same conditions, on a different plate, a control assay was performed using a commercial monoclonal antibody that recognizes the PB2 protein of Flu (Anti-Influenza A virus PB2 protein antibody, catalog number GTX125926, GeneTex) at a concentration of 3.4 μg/mL. After incubation time, the washes were repeated and a secondary anti-mouse IgG antibody labeled with horseradish peroxidase (HRP) in dilution 1 in 2000 (1.8 ng/μl per well) was added to each well in 1×PBS/10% FBS, for 1 hour at room temperature (≈25° C. (77° F.)), in the dark. Finally, washes were carried out and it was developed with 50 μL of citrate/tetramethyl-benzidine buffer (TMB, 3,3′,5,5′-tetramethylbenzidine, 1 mg/mL, Becton Dickinson). To stop the reaction, 50 μL of H.sub.2SO.sub.4 2 N were added and the result was read on an ELISA reader, at 450 nm. To determine that the reaction of the secondary antibody was specific in recognizing the primary antibody and also that the obtained signal was not caused by nonspecific binding of the secondary antibody to the viral antigen, controls were carried out in which only the secondary antibody was used with no primary antibody or sample (well not activated). Another control to determine that the primary antibody reaction is specific for the antigen, consisted of using the antibodies on an ELISA plate that has not been activated with the antigen (with no antigen) or using the antibodies on an ELISA plate that possessed 50 ng of ADV pIII protein or uninfected cells. Results show that monoclonal antibodies of the invention are capable of recognizing 50 ng of purified antigen, specifically, since they do not recognize ADV pIII protein, nor proteins of uninfected cells (
Example 4: Assay to Determine Monoclonal Antibodies Sensitivity for the Detection of Flu Anti-PB2 Viral Antigens
[0032] Assay was performed to determine the maximum protein dilution that Flu anti-PB2 monoclonal antibodies from 1A3E2 and 2F11B1 hybridomas are able to detect by indirect ELISA. For this, the same technique described in example 3 was used. The plate was activated with 11 serial dilutions of Flu PB2 protein 1:2, starting with 50 ng of purified antigen. Anti-PB2 1A3E2 and 2F11B1 antibodies were used in a concentration of 3.4 μg/mL (170 ng/well), and were diluted in 1×PBS/10% FBS. Subsequently, anti-mouse IgG detection antibody was added in a dilution of 1:2,000 (1.8 ng/μL per well) and incubated for 1 hour at room temperature (≈25° C. (77° F.)), in the dark. Finally, the washes were carried out and it was developed with 50 μL of citrate/Tetramethylbenzidine (TMB, 3-3′-5-5′-tetramethylbenzidine, 1 mg/mL, Becton Dickinson) buffer. To stop the reaction, 50 μL of H.sub.2SO.sub.4 2 N were added and the result was read on an ELISA reader, at 450 nm. Results showed that anti-PB2 1A3E2 antibody is capable of detecting up to 780 picograms (pg) of the Flu PB2 protein (
Example 5: Assay to Determine Monoclonal Antibodies Efficiency to Detect Flu Viral Antigens, by Indirect ELISA
[0033] Assay was performed to determine the maximum dilution of Flu anti-PB2 monoclonal antibodies from 1A3E2 and 2F11B1 hybridomas which allow the detection of the viral antigen. For this, a plate was activated with 50 ng of purified antigen (protein PB2) and then the plate was blocked for 2 hours at 37° C. (98.6° F.) with 1×PBS/10% Fetal Bovine Serum (FBS). Anti-PB2 1A3E2 and 2F11B1 antibodies were used in 1:2 dilutions, starting from the working concentration (170 ng) up to dilution 11 (0.15 ng) in 1×PBS/10% FBS. Subsequently, anti-mouse IgG detection antibody was added in a dilution of 1:2000 (1.8 ng/μL per well) incubated for 1 hour at room temperature (≈25° C. (77° F.)), in the dark. Finally, the washes were carried out and it was developed with 50 μL of citrate/Tetramethylbenzidine (TMB, 3-3′-5-5′-tetramethylbenzidine, 1 mg/mL, Becton Dickinson) buffer. To stop the reaction, 50 μL of H.sub.2SO.sub.4 2 N were added and the result was read on an ELISA reader, at 450 nm. In
Example 6: Clinical Diagnosis of Samples from Flu-Infected Patients, Using Flu Anti-PB2 Monoclonal Antibodies, Using ELISA Sandwich Technique
[0034] Availability and concentration of viral proteins is generally very low in clinical samples of nasopharyngeal swabs, so it was necessary to modify the ELISA assay that was previously performed. For this assay, a Sandwich ELISA was performed, using anti-PB2 antibody from the Flu 1A3E2 hybridoma as capture antibody and Flu anti-PB2 2F11B1 clone as detection antibody. Flu anti-PB2 2F11B1 detection antibody was conjugated to the HRP. Wells of an ELISA plate were activated with 3.4 μg/mL (170 ng/well) of anti-PB2 antibody from Flu 1A3E2 hybridoma, diluted in 1×PBS, for 1 hour at 37° C. (98.6° F.). 2 washes were carried out with 1×-Tween20 PBS 0.05% and later the plate was blocked with 200 μL of 1×PBS/10% FBS for 1 hour at 37° C. (98.6° F.). Washed again and incubated for 1 hour at 37° C. (98.6° F.) each well with 50 μL of nasopharyngeal swabs (previously treated) from patients positive for Flu according to the diagnostic method “D.sup.3 Ultra DFA Respiratory Virus Screening and ID ( ) Kit de DHI (Diagnostics Hibryds) USA”, routinely referred to as “viral panel”, and which were treated as described later. As controls were included: 1) specificity control: 50 μL of sample of patients diagnosed with Flu were used by the viral panel for anti-Flu antibodies; 2) positive control: 50 ng of recombinant PB2-Flu protein; 3) Negative control: corresponding to healthy control samples. Subsequently, the 2 corresponding washes were carried out with 1×-Tween20 PBS 0.05% and each well was incubated for 1 hour at room temperature with 50 μl of anti-PB2 antibody from 2F11B1 hybridoma, conjugated with HRP (1.8 ng/μL of final concentration). Detection antibodies were incubated for 1 hour at room temperature (≈25° C. (≈77° F.)), in the dark. The plate was then washed 2 more times, developed with 50 μL of TMB solution and incubated for 15 minutes in the dark. The reaction stopped with 50 μL of H2SO.sub.4 2N and the plate was read at 450 nm in an ELISA reader (Epoch model), certified for clinical diagnosis.
[0035] Obtained results for this test are shown in
[0036] This assay demonstrates the versatility of the antibodies from 1A3E2 and 2F11B1 hybridomas Flu anti-PB2, since they are capable of simultaneously binding to the antigen without competing for the binding site or interfering with each other. The above allows the capture and subsequent detection of PB2 protein in patient samples.
[0037] Treatment of clinical samples. The samples used for the tests were obtained from nasopharyngeal swabs contained in universal transport medium (UTM). The samples were centrifuged at 14,000 rpm for 4 minutes at room temperature. Subsequently, the supernatant (SN1) was separated from the pellet; the latter was incubated with 100 μL of RIPA Buffer (50 mM Tris-HCl pH 8.0, 150 mM NaCl, 1% NP-40, 0.5% Sodium Deoxycholate, 0.1%, SDS and a 1× protease inhibitor cocktail) for 15 minutes at 4° C. (39.2° F.), vortexing every 5 minutes. It was then centrifuged at 14,000 rpm for 4 minutes at room temperature. At the end, the supernatant obtained (SN2) was taken and mixed with SN1, vortexing was performed.
[0038] It is extremely important to use both antibodies for the detection of PB2 protein, due to the low availability of antigen in the sample. Using an ELISA Sandwich increases the specificity and sensitivity in the diagnosis of Flu. Assays were performed where the plate was activated directly with clinical samples of nasopharyngeal swabs, then anti-PB2 1A3E2 and anti-PB2 2F11B1 antibodies were incubated, separately. Then a secondary anti-mouse IgG antibody conjugated with HRP was incubated and absorbance generated by incubating the antibody complex plus sample with the TMB substrate was evaluated, and a positive diagnosis was not observed since the signal delivered was very low (data not shown).
[0039] Carrying out a diagnostic kit using the ELISA's Sandwich technique, where the plate can be activated and blocked, would reduce the time and cost of performing a diagnosis, since this technique is easy to perform and analyze compared to the standard technique (PCR). The kit does not need highly trained personnel to perform or analyze it.
Example 7: Clinical Diagnosis of Samples from FLU-Infected Patients, Using FLU Anti PB2 Monoclonal Antibodies, by Luminex Sandwich-Type
[0040] As in ELISA technique, the availability and concentration of viral proteins is generally very low in clinical samples of nasopharyngeal swabs, so it was wanted to evaluate the obtained results by ELISA technique to another more sensitive technique (
[0041] Obtained results for this test are shown in
[0042] This assay, as in ELISA assay with patient samples, demonstrates the versatility of antibodies from 1A3E2 and 2F11B1 hybridomas of FLU, since they are capable of simultaneously binding to antigen without competing for the binding site or interfere with each other and detect poor antigen availability in nasopharyngeal swab sample.
Example 8: Blind Study for the Detection of PB2-FLU Antigen in Clinical Samples, Obtained from Patients with an Infection, Using Flu Anti-PB2 Monoclonal Antibodies, which are Part of the Respiratory Virus Multiple Detection Kit
[0043] Previously, ELISA tests were carried out in Sandwich where the previous diagnosis of the samples to be evaluated was known. After these tests, a blind study was carried out, where about 160 nasopharyngeal swab samples were evaluated, without knowing the microbiological diagnosis. For all assays in the blinded study, ELISA's Sandwich were performed where anti-L 1A3E2 antibody was used as capture antibody and anti-L 2F11B1 antibody was used as HRP-conjugated detection antibody. For all assays, wells of an ELISA plate were activated with 3.4 μg/mL (170 ng/well) of anti-L antibody from FLU 1A3E2 hybridoma, diluted in 1×PBS, for 30 minutes at 37° C. (98.6° F.). 2 washes were carried out with 1×-Tween20 PBS 0.05% and later the plate was blocked with 200 μL of 1×PBS/10% FBS for 30 minutes at 37° C. (98.6° F.). Each well with 50 μL of nasopharyngeal swabs from patients was washed again and incubated for 1 hour at 37° C. (98.6° F.), which were evaluated in parallel by the standard diagnostic method (PCR), routinely referred to as “viral panel”, and which were treated as previously described in example 6. As controls were included: 1) specificity control: 50 μL of BSA protein (50 ng) were used; 2) positive control: 50 ng of PB2-FLU recombinant protein; 3) Negative controls: wells with no sample and wells blocked and incubated with detection antibody. Subsequently, the 2 corresponding washes were carried out with 1×-Tween20 PBS 0.05% and each well was incubated for 30 minutes at room temperature (≈25° C. (≈77° F.), in the dark) with 50 μl of anti-PB2 antibody from 2F11B1 hybridoma, conjugated with HRP (1.8 ng/μL of final concentration). The plate was then washed 2 more times, developed with 50 μL of TMB solution and incubated for 15 minutes in the dark. The reaction stopped with 50 μL of H2SO.sub.4 2 N and the plate was read at 450 nm in an ELISA reader (Epoch model), certified for clinical diagnosis.
[0044] Results are shown in
TABLE-US-00001 TABLE 1 Diagnostic accuracy of anti-PB2-FLU antibodies PIV (N = Diagnosis by reference 160) technique: PCB Specificity Sensitivity Diagnostic True positives False positives 100% 86% test: ELISA 18 9 False negatives True negatives 3 130
Example 9: Protein PB2 Detection by Indirect ELISA Assay, Using Complete Monoclonal Antibodies or Fragments Thereof
[0045] In this application example, is demonstrated that both the specific monoclonal antibody against the PB2 protein can be detected by indirect ELISA. For detection of protein L, ELISA plates were activated with 50 μL of protein PB2 y BSA 50 ng. Nonspecific sites were blocked with 10% FBS diluted in 1×PBS. 170 ng (3.4 μg/mL) of Fab fragments of antibodies secreted by 1A3E2 (anti-Flu) and 2F11B1 (anti-Flu) hybridomas, both previously biotin conjugated. Incubation of biotin-binding molecules (Streptavidin), which is HRP-conjugated (1:2,000 dilution, 75 ng per well) (
Example 10: Flu Antigen Detection Assay, Using F(Ab′)2 Fragments of Flu Anti-PB2 Monoclonal Antibodies by Indirect ELISA
[0046] The objective of this assay is to demonstrate the ability to detect fragments of anti-Flu antibodies, produced by 1A3E2 and 2F11B1 hybridomas, by PB2 protein. Prior to the indirect ELISA assay, IgG molecule of each anti-Flu antibody was fragmented. Fragmentation was performed using the “Thermo Scientific™ Pierce™ F(ab′).sub.2 Fragment Preparation Kits” kit (#10381214, Thermo Scientific), which separates F(ab′).sub.2 fragment and Fc from the antibody of interest, by using the enzyme pepsin that digests the Fc fragment and subsequently purification steps are carried out to separate the F(ab′).sub.2 fragment from the digested Fc fragment. After antibody fragmentation, purified F(ab′).sub.2 fraction was verified by the Western bolt technique. F(ab′).sub.2 fractions were conjugated to biotin molecules using the rapid conjugation kit, Lightning-Link rapid biotin type A (#370-0010, Expedeon). Having ready all reagents, antigen detection was carried out by indirect ELISA technique, where ELISA plate was activated with 50 ng of purified PB2 antigen for 1 hour at 37° C. (98.6° F.). Two negative controls were included, one with no sample and the other incubating the well with 50 ng of BSA protein. Subsequently, the plate was washed twice with 1×/Tween20 0.05% phosphate buffered saline (PBS). The plate was then blocked for 2 hours at 37° C. (98.6° F.) with 1×PBS/10% Fetal Bovine Serum (FBS). Subsequently, the washes were repeated and then each antibody conjugated with biotin, unfractionated and F(ab′).sub.2 fractions (1A3E2 and 2F11B1) was incubated at a final concentration of 3.4 μg/mL (170 ng per well), diluted in 1×PBS/10% FBS, for 1 hour at 37° C. (98.6° F.) (each antibody on a separate plate). After incubation time, washings were repeated and a biotin-binding protein (Streptavidin) labeled with horseradish peroxidase (HRP) enzyme was added to each well in dilution 1 in 2000 (25 ng/μL per well) in 1×PBS/10% FBS, for 1 hour at room temperature (□25° C. (□77° F.), in the dark. Finally, the washes were carried out and it was developed with 50 μL of citrate/Tetramethylbenzidine (TMB, 3-3′-5-5′-tetramethylbenzidine, 1 mg/mL, Becton Dickinson) buffer. To stop the reaction, 50 μL of H.sub.2SO.sub.4 2 N were added and the result was read on an ELISA reader, at 450 nm. To determine that the reaction of the secondary antibody was specific in recognizing the primary antibody and also that the obtained signal was not caused by nonspecific binding of the secondary antibody to the antigen, controls were carried out in which only the secondary antibody was used with no primary antibody or sample (well not activated). Another control to determine that the primary antibody reaction is specific for the antigen, consisted of using the antibodies on an ELISA plate that has not been activated with the antigen (with no sample) or using the antibodies on an ELISA plate that possessed 50 ng of PB2. Results show that monoclonal antibodies of the invention are capable of recognizing 50 ng of purified antigen, specifically, regardless of whether the complete antibody or a fragment thereof is used (