Microfluidic method for handling microdrops
11179722 · 2021-11-23
Assignee
Inventors
Cpc classification
B01L2200/0673
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/0893
PERFORMING OPERATIONS; TRANSPORTING
B01F33/3021
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0688
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502761
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502784
PERFORMING OPERATIONS; TRANSPORTING
B01F33/3035
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
Method for handling at least one first microdrop and at least one second microdrop in a microfluidic system including a capillary trap that has a first trapping zone and a second trapping zone, the method including steps consisting of: (i) trapping the first microdrop in the first trapping zone, and (ii) trapping the second microdrop in the second trapping zone, the first and the second trapping zone being arranged such that the first and the second microdrops are in contact with each other, the first and the second trapping zones being adapted such that the trapping forces returned to one of the microdrops are different.
Claims
1. A method for manipulating at least one first liquid microdrop and at least one second liquid microdrop in a microfluidic system comprising a capillary trap having a first trapping zone and a second trapping zone, said method comprising the steps consisting of: (i) trapping the first microdrop in the first trapping zone, and (ii) trapping the second microdrop in the second trapping zone, the first and the second trapping zones being arranged in such a way that the first and the second microdrops are in contact with one another, the first and the second trapping zone being configured in such a way that the trapping forces that would be exerted by the first and by the second trapping zone on a same first or second liquid microdrop would be different, the first microdrop being trapped in the first trapping zone with a trapping force that is greater than the trapping force the second trapping zone would exert on the first microdrop, the microdrops being moved at step (i) in the microfluidic system by an entraining force greater than the trapping force the second trapping zone would exert on the first microdrop and less than or equal to the trapping force of the first trapping zone on the first microdrop.
2. The method as claimed in claim 1, the at least one second liquid microdrop being of smaller size or of smaller volume than the first microdrop.
3. The method as claimed in claim 1, the first and the second microdrop being different or with different contents.
4. The method as claimed in claim 1, the capillary trap comprising a plurality of second trapping zones, step (ii) consisting of trapping one second microdrop per second trapping zone, the first and the second trapping zones being arranged in such a way that each second microdrop is in contact with at least one of the first or second microdrops.
5. The method as claimed in claim 4, step (ii) comprising the substeps (ii′) consisting of trapping, under the effect of a first oriented stream of fluid, a second microdrop in one or some of the second trapping zones and (ii″) consisting of trapping, under the effect of a second oriented stream of fluid, a second microdrop in another or some other part of the second trapping zones, the first and the second stream of fluid being of different orientation.
6. The method as claimed in claim 1, comprising step (iii) consisting of fusing, with the first microdrop, the or each of the second microdrops trapped in the or each of the second trapping zones.
7. The method as claimed in claim 6, comprising, after step (iii), a step consisting of trapping a third microdrop in the second trapping zone or zones that no longer have a second microdrop, so that the first and the third microdrop are in contact with one another.
8. The method as claimed in claim 1, the microdrops being fed randomly into the trapping zones.
9. The method as claimed in claim 1, the height of the first trapping zone being such that the volume of the first trapping zone is greater than or equal to the volume of the first microdrop.
10. The method as claimed in claim 1, comprising: trapping the first microdrop in the first trapping zone of the capillary trap, the trapping force F4 exerted by the first zone on the first microdrop being greater than the force Ft4 of hydrodynamic drag exerted by the stream oriented on the first microdrop, in such a way that the latter remains trapped in the first zone, the drag force Ft4 being between F4 and F5, F5 denoting the trapping force exerted on the first microdrop by the second trapping zone of the capillary trap, then, trapping the second microdrop in the second trapping zone of the capillary trap, the force of hydrodynamic drag Ft5 exerted on the second microdrop by the stream oriented during loading of the second microdrop in the second zone being between F5 and F3, F3 being the trapping force exerted by the second zone of the capillary trap on the second microdrop.
11. The method as claimed in claim 10, the trapping force F3 exerted by the second zone of the capillary trap on the second microdrop being less than trapping force F4 exerted by the first zone on the first microdrop.
12. A microfluidic device for trapping microdrops comprising a capillary trap having a first trapping zone and a second trapping zone arranged in such a way that a first liquid microdrop trapped in the first trapping zone and a second liquid microdrop trapped in the second trapping zone are in contact with one another in the capillary trap, the first and the second trapping zone being configured in such a way that the trapping forces that would be exerted by the first and by the second trapping zone on a same first or second liquid microdrop would be different, the device being configured to exert on the first microdrop an entraining force greater than the trapping force the second trapping zone would exert on the first microdrop and less than or equal to the trapping force of the first trapping zone on the first microdrop.
13. The device as claimed in claim 12, the first and the second trapping zone being cavities.
14. The device as claimed in claim 12, the first and the second trapping zone differing by at least one of their dimensions.
15. The device as claimed in claim 12, the first and the second trapping zone being of different heights.
16. The device as claimed in claim 12, the first and the second trapping zone being of different shapes, when viewed from above.
17. The device as claimed in claim 16, the first trapping zone having a larger section than the second trapping zone.
18. The device as claimed in claim 12, the second trapping zone becoming wider in at least one direction on approaching the first trapping zone.
19. The device as claimed in claim 12, the capillary trap comprising a plurality of second trapping zones arranged in such a way that each second trapped microdrop is in contact with at least one of the first or second trapped in the capillary trap.
20. The device as claimed in claim 12, comprising a plurality of capillary traps each comprising a first trapping zone and a second trapping zone.
21. The device as claimed in claim 20, the first trapping zone and the second trapping zone being arranged in such a way that the second microdrop trapped in the second trapping zone of the capillary trap is in contact with the first microdrop trapped in the first trapping zone of said capillary trap.
22. The device as claimed in claim 20, comprising at least 10 capillary traps per square centimeter.
23. The device as claimed in claim 20, comprising a first capillary trap comprising n second trapping zones and a second capillary trap comprising p second trapping zones, n being different from p.
24. The device as claimed in claim 12, comprising a channel having a trapping chamber, the capillary trap or traps being in the trapping chamber.
25. The method as claimed in claim 1, wherein the microfluidic system comprises a plurality of capillary traps, each capillary trap having a first trapping zone for trapping each a first microdrop and a second trapping zone for trapping each a second microdrop, the first microdrops forming a first panel of microdrops that are identical or of which at least y are different and the second microdrops forming a second panel of microdrops of which at least z are different, the method comprising fusing each first microdrop with the second microdrop in contact therewith so as to obtain a panel of microdrops in the microfluidic system each corresponding to one combination among the different possible combinations of first and second microdrops.
26. The method as claimed in claim 25, wherein the second panel of microdrops comprises second microdrops that are different at least in their contents.
27. The method as claimed in claim 25, wherein the second panel of microdrops comprises second microdrops that are different in their concentration of a second compound of interest.
28. The method as claimed in claim 25, comprising an additional step (iv) of observation or of measurement before a step (iii) consisting of fusing, with the first microdrop, the or each of the second microdrops trapped in the or each of the second trapping zones.
29. The method as claimed in claim 25, comprising an additional step (iv) of observation or of measurement after a step (iii) consisting of fusing, with the first microdrop, the or each of the second microdrops trapped in the or each of the second trapping zones.
30. The method as claimed in claim 25, wherein the first microdrops each comprises cells and the second microdrops each comprises a medicinal product to be screened at a defined concentration.
31. The method as claimed in claim 25, wherein the first microdrops each comprises cancerous cells and the second microdrops comprising different medicinal product to be screened.
32. The method as claimed in claim 25, wherein the first microdrops each comprises liver cells cultured in the form of spheroids and a second microdrop containing a medicinal product at different concentrations, whose toxicity we wish to evaluate, is supplied in each of the second trapping zones.
33. The method according to claim 32, wherein the first microdrops are agarose microdrops comprising liver cells cultured in the form of spheroids, the method comprising forming spheroids of liver cells and gelling the agarose.
34. The method as claimed in claim 32, comprising determining the viability of cells in each microdrops few days after the fusing step of the first and second microdrops to determine the concentration of the medicinal product that kills at least half of the cells.
35. The method as claimed in claim 25, wherein the first microdrops each comprises tumoral cells obtained from a biopsy.
36. The method as claimed in claim 25, wherein the first microdrops each comprises tumoral cells obtained from a biopsy of a particular patient cultured in the form of spheroids, the second microdrops comprise various active substances at multiple concentrations and the method comprises the determination of the active substance among the various active substance and the concentration of the latter that is the most effective, for the particular patient.
37. The method as claimed in claim 1, wherein one of the first microdrop and second microdrop comprises a gellable medium and the other comprises a plurality of cells, said method additionally comprising the steps consisting of: (iii) fusing the first microdrop with the second microdrop, (iv) gelling the gellable medium to encapsulate the plurality of cells in the gel.
38. The method as claimed in claim 37, comprising the formation of spheroids of cells before gelling step (iv).
Description
(1) The invention may be better understood on reading the following description of nonlimiting embodiment examples of the invention, referring to the appended drawing, in which:
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(20) The invention relates to a method for manipulating at least one first and one second microdrop in a microfluidic system.
(21) The microfluidic system 5 comprises an upper wall 7 and a lower wall 8, between them forming a channel 9 for circulation of the microdrops and at least one capillary trap 12.
(22) Capillary Trap
(23) In the example illustrated in
(24) The first and the second trapping zones 15 and 18 exert different trapping forces on a given microdrop, in particular owing to their difference in shape. Here, the first trapping zone 15 exerts a larger trapping force than the second trapping zone 18.
(25) When a first microdrop 20 is introduced into the microfluidic system it is trapped in the trapping zone having the largest trapping force for this microdrop, in this case the first trapping zone 15. When the second microdrop 25 is introduced it is trapped in the free trapping zone, here the second trapping zone 18, as is illustrated in
(26) In the figures, the first microdrops 20 are shown in black and the second microdrops 25 are shown transparent, but without this representing a particular difference in contents between the two microdrops.
(27) The first trapping zone 15 has a diameter a approximately equal to the apparent diameter D.sub.1, viewed from above, of the first microdrop 20, once trapped in the first trapping zone.
(28) The two trapped microdrops 20 and 25 are in contact with one another notably on account of the small distance between the two trapping zones 15 and 18 relative to the diameters of the two microdrops 20 and 25. Moreover, the two microdrops 20 and 25 are kept in contact owing to the triangular shape of the second trapping zone 18. In fact, the second microdrop 25, being in contact with two opposite walls 27 and 28 of the second trapping zone 18 moving away from one another in the direction of the first trapping zone 15, is caused, through its natural tendency to always minimize its surface energy, to move in translation between the two opposite walls 27 and 28 in the direction of widening of the walls 27 and 28, i.e. toward the first trapping zone 15 and therefore the first microdrop 20.
(29) In
(30) In the example illustrated in
(31) The second trapping zone 18 exerts a trapping force on the second microdrop 25 that is greater than what it would exert on the first microdrop 20. In fact, although the design of the second trapping zone is the same regardless of the diameter of the microdrop, the diameter of the second microdrop 25 adapts better to the shape and size of the second trapping zone 18 than of the first microdrop 20. However, it may be otherwise, and the second microdrop 25 may be of the same diameter as the first microdrop 20.
(32) As a variant, the first microdrop and the second microdrop 20 and 25 are different from one another with respect to another of their properties, notably their surface state, their viscosity or their weight.
(33) As a variant illustrated in
(34) As a variant, illustrated in
(35) As a variant illustrated in
(36) As a variant, not illustrated, the two second trapping zones 18a and 18b may exert identical forces on the second trapped microdrops 25a and 25b.
(37) As a variant, not illustrated, the capillary trap may have more than two second trapping zones configured to form a string of trapped second microdrops, itself in contact, via at least one of the second microdrops forming it, with the first microdrop trapped in the first trapping zone.
(38) It is thus possible to envisage more complex shapes of capillary traps comprising a plurality of trapping zones configured so that the trapped microdrops are all joined together directly or via other microdrops.
(39) As a variant illustrated in
(40) The second trapping zones 18 may be uniformly distributed around the first trapping zone 15, as is illustrated. However, it may be otherwise.
(41) As a variant illustrated in
(42) As a variant illustrated in
(43) The invention is not limited to the examples of shape of the capillary trap 12 described above. The capillary trap 12 may have various shapes, notably as a function of the required application.
(44) For example, as illustrated in
(45) As a variant illustrated in
(46) As a variant illustrated in
(47) As illustrated in
(48) As illustrated in
(49) As illustrated in
(50) As illustrated in
(51) The first trapping zone 15 may be of square shape, as illustrated in
(52) As a variant, the second trapping zone 18 is of triangular shape but joined to the first trapping zone 15 by one of its corners, as illustrated in
(53) As a further variant, the second trapping zone 18 is of polygonal shape, notably hexagonal, as illustrated in
(54) As a further variant, the capillary trap 12 may comprise two second trapping zones 18 fused to the first trapping zone 15 at opposite corners of the latter, as illustrated in
(55) As illustrated in
(56) As a variant illustrated in
(57) As illustrated in
(58) The first trapping zone 15 may be of rectangular shape and the second trapping zone 18 of square shape fused to the first trapping zone 15 by a short side of the rectangle. Depending on the size of the first microdrops 20, the first trapping zone 15 may then trap a single first microdrop 20, as illustrated in
(59) As a variant illustrated in
(60) The first trapping zone 15 may be of oval shape and the second trapping zone 18 may be fused to the latter starting from its long side, as illustrated in
(61) The capillary trap may comprise a plurality of second trapping zones 18, at least two of which are different, notably by their sizes, as is illustrated in
(62) In the example illustrated in
(63) As a variant illustrated in
(64) In the example illustrated in
(65) In the examples illustrated in
(66) In the examples illustrated in
(67) In cross section, the first trapping zone 15 and the second trapping zone 18 may be of constant height over their entire width.
(68) As a variant illustrated in
(69) As a further variant illustrated in
(70) As a further variant illustrated in
(71) As a variant illustrated in
(72) As a variant, the capillary trap 12 is formed at least partially by a cavity of one of the side walls of the microfluidic system.
(73) As a variant illustrated in
(74) As a variant illustrated in
(75) Microfluidic Device
(76) The channel 9 for circulation of the microdrops may comprise a plurality of capillary traps 12.
(77) In particular, channel 9 may comprise a two-dimensional trapping chamber 30 in which the capillary traps 12 are distributed spatially according to two spatial directions in a table or matrix, as illustrated in
(78) The number of capillary traps 12 in the trapping chamber 30 may range from a single one per chamber to several thousand per cm.sup.2.
(79) The distance p defined between the centers of gravity of the capillary traps 12 is preferably greater than or equal to the size of the largest microdrops intended to be trapped, notably greater than or equal to the apparent diameter, viewed from above, of a first drop confined in the channel between the walls 7 and 8 outside of the capillary traps, for example between 20 μm and 1 cm.
(80) The number of capillary traps may be greater than or equal to 200 capillary traps per cm.sup.2, better still 2000 capillary traps per cm.sup.2. Thus, controlled combination of microdrops may be performed in hundreds, or even tens of thousands of traps in parallel in the same trapping chamber 30.
(81) The capillary traps 12 may be as described above.
(82) The capillary traps 12 may all be identical.
(83) As a variant, at least two capillary traps 12 may be different, notably by their shapes, sizes, heights or orientations, or by the number, shape, height or orientation of the first and second trapping zones 15 and 18. This makes it possible to have different conditions as a function of the capillary trap 12.
(84) As a variant that is not illustrated, channel 9 may be one-dimensional and comprise an array of capillary traps 12 distributed along its length.
(85) The invention is not limited to the shapes of microfluidic system described above. The microfluidic system may have different shapes, notably as a function of the required application.
(86) Microdrops
(87) Preferably, channel 9 is filled with a fluid in which the microdrops are immiscible. This fluid may be stationary or moving. When the latter is moving, the stream of fluid is preferably oriented along the lines of fluid circulation (not shown) and circulates from a fluid inlet 31 to a fluid outlet 32.
(88) The microdrops are, for example, aqueous microdrops in an oily liquid or microdrops of oil in an aqueous liquid.
(89) Preferably, the first and second microdrops 20 and 25 have diameters D.sub.1 and D.sub.2 of the order of a micrometer, notably between 20 and 5000 μm.
(90) The first microdrops 20 are preferably different from the second microdrops 25, notably with respect to their sizes and/or their compositions.
(91) The first microdrops 20, or the second microdrops 25, may form a panel of microdrops, at least a certain number of which are different.
(92) The first and/or the second microdrops 20 and 25 may comprise an identifying compound allowing them to be identified before, during and/or after coalescence of the first and second microdrops 20 and 25 in contact. This or these identifying compound(s) may be for example a certain number of beads or particles, compounds of varied colors or shapes or compounds emitting a colorimetric or fluorescence signal proportional to their concentration in the microdrop. In the case of a panel of first microdrops and/or a panel of second microdrops comprising a compound of interest in different concentrations and/or different compounds of interest, it is thus possible to associate the position of a first and/or second microdrop in the trapping chamber with its composition in order to map the microdrops trapped in the trapping chamber.
(93) As a variant, the identifying compound or compounds of the first microdrops interact with one or more identifying compounds of the second microdrops so as to allow identification of the microdrop obtained after fusion. For example, fusion of the microdrops may lead to a chemical reaction, at least one of the products of which may be identified.
(94) Preferably, channel 9 is filled with a fluid containing a surfactant. The latter allows stabilization of the microdrops and reproducibility of their formation. The surfactants in addition make it possible to prevent spontaneous coalescence of the microdrops in the case of contact while they are conveyed from the production device to the capillary traps or in the capillary traps.
(95) For aqueous microdrops, the surfactant is for example a compound selected from PEG-di-Krytox in a fluorinated oil or SPAN®80 in a mineral oil.
(96) For microdrops of oil, the surfactant is for example sodium dodecyl sulfate.
(97) As a variant, the microdrops are stabilized by some other means, notably the microdrops may be gelled, or stabilized by adsorption of amphiphilic nanoparticles as described in the article of Pan, M., Rosenfeld, L., Kim, M., Xu, M., Lin, E., Derda, R., & Tang, S. K. Y. (2014). Fluorinated Pickering Emulsions Impede Interfacial Transport and Form Rigid Interface for the Growth of Anchorage-Dependent Cells. Applied Materials & Interfaces, 6, 21446-21453, incorporated here by reference.
(98) Method of Manipulation
(99) An example of a method of manipulating the first and second microdrops is illustrated in
(100) The first microdrops 20 are produced in step 40. Many methods have already been proposed for forming these first microdrops in a mobile phase. For example, the following examples of methods may be mentioned: a) the method called “flow-focusing” described for example in S. L. Anna, N. Bontoux and H. A. Stone, “Formation of dispersions using ‘Flow-Focusing’ in microchannels”, Appl. Phys. Lett. 82, 364 (2003), the contents of which are incorporated here by reference, b) the method called “step emulsification” described for example by R. Seemann, M. Brinkmann, T. Pfohl, and S. Herminghaus, in “Droplet based microfluidics.” Rep. Prog. Phys., Vol. 75, No. 1, p. 016601, January 2012, the contents of which are incorporated here by reference, c) the method combining the methods of “flow-focusing” and “step emulsification”, described for example by V. Chokkalingam, S. Herminghaus, and R. Seemann, in “Self-synchronizing pairwise production of monodisperse droplets by microfluidic step emulsification,” Appl. Phys. Lett., Vol. 93, No. 25, p. 254101, 2008, the contents of which are incorporated here by reference, d) the method called “T junction” described for example by G. F. Christopher and S. L. Anna, in “Microfluidic methods for generating continuous droplet streams,” J. Phys. D. Appl. Phys., Vol. 40, No. 19, pp. R319-R336, October 2007, the contents of which are incorporated here by reference, e) the method called “confinement gradient” described for example by R. Dangla, S. C. Kayi, and C. N. Baroud, in “Droplet microfluidics driven by gradients of confinement,” Proc. Natl. Acad. Sci. U.S.A., Vol. 110, No. 3, pp. 853-8, January 2013, the contents of which are incorporated here by reference, or f) the method of “micro-segmented flows” described for example by A. Funfak, R. Hartung, J. Cao, K. Martin, K. H. Wiesmüller, O. S. Wolfbeis, and J. M. Köhler, in “Highly resolved dose-response functions for drug-modulated bacteria cultivation obtained by fluorometric and photometric flow-through sensing in microsegmented flow,” Sensors Actuators, B Chem., Vol. 142, No. 1, pp. 66-72, 2009, the contents of which are incorporated here by reference, in which two solutions in different controlled proportions are mixed at the level of a function outside the microfluidic system to form microliter drops separated by an immiscible phase and then a method of dividing these drops into microdrops by injecting them for example into a microfluidic system containing a slope.
(101) These methods notably make it possible to form a plurality of microdrops of approximately equal dimensions. The dimensions of the microdrops obtained may be controlled by modifying the parameters of formation of the microdrops, notably the velocity of circulation of the fluids in the device and/or the shape of the device.
(102) The first microdrops 20 may be produced on the same microfluidic system as the method or on a different device. In the latter case, the first microdrops 20 may be stored in one or more external containers before being injected into the microfluidic system. These first microdrops 20 may all be identical or some of them may be of different compositions, concentrations and/or sizes.
(103) After formation of these first microdrops 20, the latter may be conveyed to the capillary trap 12 by entrainment by a stream of a fluid and/or by slopes or reliefs in the form of rails of the channel 9. In both cases, the addition of rails may make it possible to optimize the filling of the capillary trap 12, selectively, for example in combination with the use of an infrared laser, as described by E. Fradet, C. McDougal, P. Abbyad, R. Dangla, D. McGloin, and C. N. Baroud, in “Combining rails and anchors with laser forcing for selective manipulation within 2D droplet arrays,” Lab Chip, Vol. 11, No. 24, pp. 4228-34, December 2011.
(104) If production of the microdrops is carried out outside the microfluidic system, they may be transported from storage to the microfluidic system directly via a tube connecting for example the production system and the trapping system or by aspiration and injection with a syringe.
(105) The first microdrops 20 are entrained in the microfluidic system in such a way that the entraining force to which they are subjected is less than the trapping force of the first trapping zones 15 on the first microdrops 20. The first microdrops 20 are then trapped, in step 42, in the capillary trap 12, in particular in the first trapping zones 15. If the entraining stream exerts on the first microdrops 20 an entraining force on the first microdrops 20 that is greater than the trapping force of the second trapping zones 18, the latter are not trapped in the second trapping zones 18 that remain free.
(106) Otherwise the first microdrops 20 may be trapped in the second trapping zones 18, especially if the sizes of the traps and of the drops are suitable. It is then possible to remove them from the latter by increasing the entraining force applied to all of the first microdrops 20, for example by increasing the velocity of the stream of fluid or, when there is none, by adding a stream of fluid in a step 44.
(107) As a variant, the first microdrops 20 may be formed by a method called “breaking of the drops in capillary traps” described for example in international application WO 2016/059302, the contents of which are incorporated here by reference. In this case, the first microdrops 20 are formed directly in the first trapping zones 15.
(108) The second microdrops 25 are produced in step 46. This step is shown after step 44 but it could take place beforehand. The second microdrops 25 may be produced and introduced into the microfluidic system as described above in relation to the first microdrops 20.
(109) The second microdrops 25 are entrained in the microfluidic system in such a way that the entraining force to which they are subjected is less than the trapping force of the second trapping zones 18 on the second microdrops 25. The second microdrops 25 are then trapped, in step 48, in the second trapping zones 18. When the second microdrops 25 are entrained by a stream of fluid, the latter exerts an entraining force on the first microdrops 20 trapped in the first trapping zones 15 that is preferably less than or equal to the trapping force of the first trapping zones 15 on the first microdrops 20 so that the latter remain trapped.
(110) At each stage, the method may comprise a step of first measurement of the state of the system. This measurement may be simple imaging, or for example colorimetric, fluorescence, spectroscopic (UV, Raman) or temperature measurement. This measurement may be particularly useful in the context of using panels of different first and/or second microdrops 20 comprising an identifying compound as described above.
(111) When several microdrops are in contact in one and the same trap, it is possible to fuse them in a controlled manner to mix their contents in step 50. This coalescence may or may not be selective.
(112) To fuse all of the microdrops in contact in the microfluidic system, notably in the trapping chamber 30, the latter is perfused with a surfactant-free fluid. The concentration of surfactant in the fluid of the microfluidic system decreases, which makes it possible to shift the equilibrium of adsorption of surfactant at the interface toward desorption. The microdrops lose their stabilizing effect and fuse spontaneously with the microdrops with which they are in contact.
(113) As a variant, the microfluidic system is perfused with a fluid containing a destabilizing agent. The destabilizing agent is for example 1H,1H,2H,2H-perfluorooctan-1-ol in a fluorinated oil in the case of aqueous microdrops.
(114) As a further variant, all of the microdrops in contact in the microfluidic system, notably in the trapping chamber 30, are fused by applying an external physical stimulus, such as mechanical waves, pressure waves, a temperature change or an electric field. As is illustrated in
(115) To fuse the microdrops selectively, an infrared laser may be used, as described by E. Fradet, P. Abbyad, M. H. Vos, and C. N. Baroud, in “Parallel measurements of reaction kinetics using ultralow volumes,” Lab Chip, Vol. 13, No. 22, pp. 4326-30, October 2013, or localized electrodes 37 at the level of the interfaces of microdrops between the trapping zones may be activated, as illustrated in
(116) The invention is not limited to the examples of coalescence described above. Any method making it possible to destabilize the interface between two microdrops in contact may be used for fusing the microdrops.
(117) It is then possible to measure the state of the microdrops obtained and/or observe the latter in real time. This makes it possible, for example, to study the kinetics of chemical or biochemical reactions.
(118) Selective Trapping
(119) When the capillary trap or traps 12 have a plurality of second trapping zones 18, the position of the second trapping zone or zones 18 relative to the direction and the sense of the entraining force being exerted on the second microdrops 25 may allow selective trapping to be carried out.
(120) Take the case of a capillary trap with two second trapping zones 18m and 18v arranged on either side of a first trapping zone 15 and aligned in the direction of the entraining force exerted, as illustrated in
(121) As is illustrated in
(122) Example of Chronology of Microdrop Trapping
(123) In an embodiment example illustrated in
(124) Selective Trapping of the Two Microdrops is Thus Obtained, in the Two Zones of the Capillary Trap Respectively.
(125) Trapping According to the Size of the Microdrops
(126) The second trapping zones 18 of the various capillary traps 12 in one and the same microfluidic system may have different properties, notably different sizes. This makes it possible, for example, to trap different second microdrops 25 in the different capillary traps 12 in order to obtain different microdrops. For example, for a given concentration of an element included in the second microdrops, the amount of its elements contained in a second microdrop depends on the size of said second microdrop. Thus, by producing second trapping zones 18 for example of different sizes in the same trapping chamber 30, it is possible to trap second microdrops 25 of different sizes selectively, with a size of second microdrop 25 corresponding to each size of second trapping zone 18.
(127)
(128) It is preferable to place the capillary traps 12a, 12b and 12c by trapping forces of the second trapping zones 18a, 18b and 18c relative to the largest of the second microdrops 18a increasing in the direction of the entraining force of the second microdrops, notably in the direction of the stream of fluid, in the microfluidic system. Thus, the second microdrops 25a, 25b and 25c first encounter the second trapping zones 18c, in which only the smallest second microdrops 25c are trapped, then the second trapping zones 18b in which only the second microdrops 25b are trapped and finally the second trapping zones 18a in which the largest second microdrops 25a are trapped.
(129) As a variant, the microdrops 25a, 25b and 25c differ by another of their parameters, and they notably comprise different elements.
(130) This makes it possible to obtain a panel of microdrops, at least some of which are different, notably in respect of their concentration of a compound and/or their composition.
(131) Sequential Coalescence
(132) Steps 46, 48 and 50 may be repeated, as is illustrated in
(133) Note that if the coalescence step consists of removing the surfactant from the external phase or of destabilizing it chemically, a stabilization step may be necessary between the different coalescences. In practice, it is necessary to perfuse the trapping chamber with a fluid that is immiscible with the microdrops containing surfactant before bringing one or more new microdrops into the capillary trap.
(134) The ability to perform sequential coalescence has several applications. If a first microdrop 20 trapped in a first trapping zone 15 of a capillary trap 12 contains cells (for example bacteria, yeasts or mammalian cells), sequential coalescence may allow the culture medium to be renewed several times by sequentially fusing second microdrops 25 containing a culture medium at predetermined times.
(135) This may also serve for modeling the intermittent nature of administration of a medicinal product. For example, a first microdrop 20 containing a spheroid of mammalian cells and trapped in a capillary trap 12 is fused every 6 hours with a second microdrop 25 of medicinal product.
(136) Drop Concentration Gradient
(137) The capillary traps 12 in the trapping chamber 30 may be different and their locations may be controlled. It is possible for example to have capillary traps 12 having a different number of second trapping zones.
(138) As is illustrated in
(139) Panels of Microdrops
(140) Injection of panels of microdrops comprising different compounds and/or different concentrations in a chamber containing capillary traps 12 as described above offers many applications.
(141) Take the example of a trapping chamber of 2 cm.sup.2 having 1000 capillary traps each making it possible to trap a first and a second microdrop 20 and 25. The first microdrops 20 form a panel of microdrops containing a first compound in 20 different concentrations. The second microdrops 25 contain a second compound in 10 different concentrations. By fusing the first and the second microdrops 20 and 25 in the capillary traps 12, it is possible to obtain a matrix of microdrops each corresponding statistically to one combination among the 200 possible combinations of first and second microdrops 20 and 25.
(142) The fact that the microdrops are static also makes it easier to obtain kinetic data. There is also the advantage of economy of reagents, through the use of very small volumes in the microdrops.
(143) The trapping chamber 30 may have a surface area greater than 2 cm.sup.2, giving a further large increase in the number of different reactions that may be carried out in parallel in a microfluidic system.
(144) The compounds contained in the first and second microdrops 20 and 25 may be chemical molecules that will react with one another and whose initial concentrations are required to be optimized. The method described above makes it possible to carry out large-scale combinatorial chemistry. The microdrops may then comprise one or more identifying means. This may make it possible for example to measure the concentration of the end product, for example by fluorescence or spectroscopy.
(145) As a variant, the first and/or second microdrops 20 and/or 25 may contain proteins, enzymes, and cells at various concentrations.
(146) The microfluidic system and the method described above may make it possible to investigate protein crystallization. In fact, obtaining a crystal from a purified solution of protein is an essential step for determining its three-dimensional structure since this makes it possible to obtain an X-ray diffraction pattern. However, the protein is always available in very small amounts and the optimum crystallization conditions vary from one protein to another.
(147) For example, using a trapping chamber 30 with several capillary traps 12, each making it possible to trap a first and a second microdrop 20 and 25, gives a first microdrop panel comprising a saline solution in different concentrations and a second microdrop panel comprising a protein of interest in different concentrations. By fusing the first and the second microdrops 20 and 25 in the capillary traps 12, it is possible to obtain a matrix of microdrops representing conditions of different concentrations of saline solution and proteins, so as to be able to determine the concentrations allowing optimum protein crystallization.
(148) By immobilizing, on the capillary traps 12, first microdrops 20 comprising an element of interest in identical concentration in the whole trapping chamber and by fusing the latter with second microdrops 25 obtained from a panel of microdrops comprising a titrating species in different concentrations, it is possible to perform titration of the species of interest contained in the first microdrops 20. This application may be particularly advantageous in the case of reagents that are expensive or available in small amounts.
(149) The method presented here may also be very useful for screening medicinal products. For example, cancer cells may be cultured, in individualized form or in the form of spheroids, in first microdrops 20 trapped in each of the first trapping zone 15 of the capillary trap 12, and after culture for some days, it is possible to coalesce them in each trap with a second microdrop 25 containing a medicinal product to be screened, the second microdrops 25 being obtained from a panel of microdrops containing different medicinal products.
(150) In a similar configuration, we may imagine the culture of liver cells in the form of spheroids in first trapped microdrops 20 and the supply, to each of the capillary traps 12, of a second microdrop 25 containing a medicinal product, whose toxicity we wish to evaluate, each microdrop being obtained from a panel of microdrops comprising the medicinal product in different concentrations. By analyzing the results for viability some days after coalescence, it is possible for example to deduce the concentration of this medicinal product that kills half of the cellular population.
(151) This method may also allow evaluation of the interactions between different antibiotics. It is possible to create a panel of second microdrops 25 containing one or more antibiotics in different concentrations and fuse them in the trapping chamber 30 with first microdrops 20 containing bacteria. The first microdrops 20 may comprise a bacterium in different concentrations. This makes it possible to explore a space with 3 parameters.
(152) The application of microfluidics may be very advantageous in the context of rare samples such as biopsies. The microfluidic system may for example be used in the context of personalized medicine and cancer treatment. With this system it is possible to culture, for example in the form of spheroids in first trapped microdrops 20, tumor cells from a patient who has undergone a biopsy and subject them to different medicinal products at multiple concentrations by feeding the second microdrops 25 into the trapping chamber 30. After coalescence of the pairs of microdrops with cells and the medicinal product, the most effective medicinal product and its concentration for a particular patient may be determined using only a single trapping chamber 30 and a minimal number of cells obtained from the biopsy.
(153) Tissue Engineering
(154) The method as described above may make it possible to fuse microdrops containing cells, which may or may not be of different cell types, for accurately forming microtissues.
(155) The capillary trap may be as illustrated in
(156) A first microdrop 20 may contain cells of a first cell type in a liquid medium and may be trapped in the first trapping zone 15 of said capillary trap 12 to form, after immobilization for one day, a first spheroid spontaneously by sedimentation of the cells. Preferably, the microfluidic system does not have a stream of fluid near the capillary trap during formation of the first spheroid so that the liquid of the first microdrop 20 is not caused to move. A second microdrop 25 containing cells of a second cell type in a liquid medium may be trapped in the second trapping zone 18. After coalescence of the first and of the second microdrop, a culture of cells of two different types is obtained, the architecture of which depends in particular on the experimental conditions.
(157) If the first microdrop 20 is liquid, the cells of the second microdrop 25 mix, after coalescence, with the contents of the first microdrop 20 and then settle, giving the spheroid of cells of the first cell type directly.
(158) If the cells of the second microdrop 25 have had time before coalescence to form a second spheroid, coalescence of the two microdrops 20 and 25 leads to fusion of the first and second spheroids.
(159) If coalescence takes place before the cells of the second microdrop 25 have had time to form a spheroid, the cells will be deposited after sedimentation on the surface of the first spheroid.
(160) If now one of the two microdrops 20 or 25 is gelled before the coalescence operation, the two cellular populations are compartmentalized. In fact, if the first microdrop 20, which contains the first spheroid, is gelled before the second microdrop 25 arrives, the cells of second cell types will no longer be able, after coalescence of the microdrops 20 and 25, to come directly into contact with the first spheroid owing to the presence of the gel. For example, mammalian cells cannot pass through a matrix of agarose at 0.9 wt %. The two groups of cells can then only communicate with one another by the paracrine route.
(161) The example given here is for a capillary trap 12 trapping a first and a microdrop 20 and 25 but it is possible to obtain more complex architectures of microtissues with a capillary trap 12 allowing more than two microdrops to be trapped and/or methods as described above consisting of coalescing several microdrops sequentially by varying or not varying the orientation of the stream of fluid. It is also possible to use a plurality of capillary traps as described above to form a plurality of microtissues in parallel.
(162) This technique for forming microtissues may make it possible to create microtissues in vitro with a controlled architecture for very faithfully mimicking the conditions encountered in vivo. In fact, in the body the different cell types are often arranged in tissues according to a specific architecture that is important for recreating a function at the level of an organ.
(163) The latter may also be used for the purpose of transplantation in a patient. For example, glucagon-producing alpha cells and insulin-producing beta cells may be combined to create islets of Langerhans intended to be transplanted into a patient's pancreas to treat diabetes. Similarly, hepatocytes and stellate cells could be combined in the context of liver transplant.
(164) Hydrogels
(165) The method as described above may also be used for creating multilayer gel microdrops.
(166) The capillary trap 12 may be as described above and may comprise a first trapping zone 15 and a second trapping zone 18.
(167) As is illustrated in
(168) As a variant illustrated in
(169) The method may also make it possible to obtain spheroids encapsulated in biological hydrogels.
(170) In order to be able to form spheroids in microdrops in a controlled manner it is necessary to be able to keep the contents of the microdrop liquid during the time of formation of the spheroid. Agarose is very suitable for this protocol as it is a heat-sensitive hydrogel. It remains liquid at 37° C. (ultra low gelling agarose) and then solidifies after 30 min at 4° C. and remains solidified after returning to 37° C. However, mammalian cells cannot adhere to agarose and they cannot digest it either. This matrix is therefore very different from the extracellular matrix encountered in the body. The use of hydrogels such as for example type I collagen, fibronectin, Matrigel® or gelatin could be preferable for better simulation of natural conditions. However, it is more difficult to control their gelation. For example, type I collagen cannot be kept liquid for a long time with favorable conditions for cell culture (low temperature or acid pH). If cells are encapsulated in a collagen microdrop that is gelled quickly after trapping, rather than adhering to one another and forming a spheroid, the cells will adhere to the collagen and migrate individually along its fibers.
(171) This problem can be solved by the method according to the invention.
(172) The capillary trap may be as illustrated in
(173) A first microdrop 20 may contain cells of a first cell type in a liquid medium and may be trapped in the first trapping zone 15 of said capillary trap 12 to form, after immobilization for one day, a spheroid spontaneously by sedimentation of the cells. Preferably, the microfluidic system does not have a stream of fluid near the capillary trap during formation of the spheroid, so that the liquid of the first microdrop 20 is not caused to move. A second microdrop 25 containing one of the biological hydrogels mentioned above in high concentration may be trapped in the second trapping zone 18. Once this second microdrop is trapped, the two microdrops are fused immediately in such a way that the biological hydrogel, still liquid, mixes with the first microdrop that contains the spheroid. Gelation then takes place and the spheroid is encapsulated in an extracellular matrix representative of the biological conditions encountered in vivo.
(174) This technique of spheroid encapsulation may be combined with the technique for forming microtissues described above to allow more complex architectures of microtissues to be obtained.
(175) The following nonlimiting examples describe embodiment examples of the invention as described above.
EXAMPLE 1
(176) An experiment was carried out to demonstrate the feasibility of the method. The trapping chamber 30 used is of 2 cm.sup.2 and contains 393 identical capillary traps similar to that in
(177) a=250 μm,
(178) b=c=150 μm,
(179) H=100 μm, and
(180) h=50 μm.
(181) The capillary traps 12 are distributed according to a matrix as illustrated in
(182) The microdrops comprise food dyes. Drops of 1 μL with five different colors ranging from blue to green to yellow were formed by the “micro-segmented flows” technique. These 1 μL drops were fractionated into many first monodisperse nanoliter microdrops 20 using a slope (method described at point f) above). These first microdrops 20 of various colors were then mixed to form a first panel of microdrops comprising different colors and were then injected into the trapping chamber 30 containing the capillary traps 12. The size of the first microdrops 20 was adjusted so that they fully occupy the first trapping zones 15. The second trapping zones 18 remain empty.
(183) In the same way, five hues of 1 μL drops ranging from transparent, colorless to red were formed and then fractionated into second microdrops smaller than the first microdrops owing to a differently designed slope. These second microdrops were mixed to form a second panel of microdrops comprising different colors and were then injected into the microfluidic chamber, where they are trapped in the second free trapping zones 25.
(184) A matrix of pairs of first and second microdrops 20 and 25 as illustrated in
(185) This experiment demonstrates that it is possible to combine different reagents in different concentrations within one and the same trap, in parallel in a trapping chamber 30, after coalescence of pairs of different compositions.
EXAMPLE 2
(186) An experiment was carried out for obtaining spheroids resulting from two successive fusions of separate spheroids.
(187) The microfluidic system comprises a trapping chamber 30 having a matrix of capillary traps as illustrated in
(188) H=165 μm, and
(189) h.sub.1=388 μm,
(190) h.sub.2=80 μm,
(191) c=200 μm,
(192) a=400 μm.
(193) Rat hepatic cells (H4IIEC3) were first encapsulated in first microdrops 20. The first microdrops 20 were trapped in the first trapping zones 15 and, after sedimentation, the cells collect at the bottom of each drop to form a first spheroid 130. After one day, necessary for formation of these first spheroids, second microdrops 25 were trapped in the second trapping zones 18, as can be seen in
(194) After coalescence in each trap, the second spheroid 135 sediments and comes into contact at the bottom of the first microdrop with the first spheroid 130 in a new first microdrop 140, as can be seen in
(195) This operation was then repeated, this time with third microdrops 85 encapsulating H4IIEC3 cells that had been colored green (CellTracker Green®), as can be seen in
(196) Therefore we finally obtain a matrix of three-colored spheroids, as illustrated in
(197) This experiment demonstrates the potential of the technique for applications connected with tissue engineering. In fact, rather than fusing spheroids of one and the same cell type but with different colors, we may easily imagine fusing spheroids of complementary cell types to create functional microtissues with a well-defined architecture.
EXAMPLE 3
(198) An experiment was conducted to determine, in a single microfluidic system, the concentration beyond which a medicinal product (acetaminophen) becomes toxic to liver cells (rat hepatoma, H4IIEC3 cells).
(199) The microfluidic chamber used containing 252 identical traps on 2 cm.sup.2 in
(200) The first microdrops 20 of agarose that is liquid at 37° C. (ultra-low gelling), at 0.9 wt % diluted in culture medium containing H4IIEC3 cells, were trapped in the first trapping zones 15, the second trapping zone 18 remaining free. The first microdrops 20 were then cultured for one day to allow the cells to adhere to one another to form a spheroid by first microdrops 20. The first microdrops 20 were then gelled by application of a temperature of 4° C. for 30 min.
(201) In parallel, acetaminophen was dissolved at high concentration in culture medium. Fluorescein at high concentration was added to this solution. The solution obtained was diluted to different concentrations with pure culture medium to form 14, drops at different concentrations. These drops were then fractionated into second microdrops 25 by means of a slope and then mixed before being injected into the trapping chamber 30 containing the first microdrops 20. These second microdrops 25 were smaller than the first microdrops 20 and were trapped in the second trapping zones 18.
(202) By taking a fluorescence image before fusion, the different levels of fluorescence that are correlated with the concentration of medicinal product in the second microdrops 25 could be identified. Even if these drops were immobilized randomly in traps, it is then possible to find the concentration of acetaminophen with which it was combined in the capillary trap 12, corresponding to each spheroid.
(203) The chamber was perfused with HFE-7500 (fluorinated oil) containing 1H,1H,2H,2H-perfluorooctan-1-ol at a concentration of 20 vol % in order to fuse the microdrops in contact. The acetaminophen then diffused through the gelled agarose and acted on the cells. After one day of exposure to acetaminophen, the oil that separates the microdrops from one another is replaced with an aqueous phase as described in international application WO 2016/059302 to color the spheroids with fluorescent viability markers present in the aqueous phase. By taking an image of the final matrix, the spheroids whose viability was affected most could be determined. It was found that the higher the concentration of acetaminophen, the fewer cells survive. Thus, correlating the result for viability and the concentration of acetaminophen in the second microdrops, it could be determined that the range of toxicity of acetaminophen on these hepatic cells is between 10 and 30 mmol/L for a static exposure of 1 day.
(204) The work that led to this invention received financing from the European Research Council in the context of the Seventh Framework Programme of the Union (FP7/2007-2013)/ERC grant agreement No. 278248.