Bifunctional Proteins Combining Checkpoint Blockade for Targeted Therapy
20230322931 · 2023-10-12
Inventors
- Jeng-Horng Her (San Jose, CA)
- Jhong-Jhe YOU (Taipei City, TW)
- Ching-Hsuan HSU (Taoyuan City, TW)
- Po-Lin HUANG (Taipei City, TW)
Cpc classification
C07K14/723
CHEMISTRY; METALLURGY
C07K2317/732
CHEMISTRY; METALLURGY
G01N2333/70596
PHYSICS
C07K2317/76
CHEMISTRY; METALLURGY
C07K14/70596
CHEMISTRY; METALLURGY
A61K47/6803
HUMAN NECESSITIES
C07K14/70578
CHEMISTRY; METALLURGY
International classification
C07K16/28
CHEMISTRY; METALLURGY
A61K47/68
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
Abstract
Provided are bispecific proteins that comprise a binding domain binding cell surface protein and a vascular endothelial growth factor (VEGF) inhibiting domain. Provided also is an antibody-drug conjugate that comprises a therapeutic agent and an antibody or an antigen-binding fragment binding PD-L1 and/or a VEGF inhibiting domain, wherein the therapeutic agent is covalently conjugated to the antibody or the antigen-binding fragment by a linker.
Claims
1. A fusion protein comprising an antibody or antigen-binding fragment thereof that comprises an at least one polypeptide chain, the at least one polypeptide chain comprising: a binding domain binding cell surface protein, wherein the binding domain binds programmed cell death protein 1 ligand (PD-L1), and the binding domain comprises: a heavy chain variable region comprising complementarity-determining regions (CDRs) CDR1, CDR2, and CDR3 set forth in the sequence of SEQ ID NO: 6 and a light chain variable region comprising CDR1, CDR2, and CDR3 set forth in amino acid 1-110 of SEQ ID NO: 5; and a vascular endothelial growth factor (VEGF) inhibiting domain comprising the amino acid sequence of SEQ ID NO: 9.
2. The fusion protein of claim 1, wherein the at least one polypeptide chain further comprises: an Fc domain; and an Fab fragment connected to the N-terminus of the Fc domain, the Fab fragment comprising the binding domain, wherein the VEGF inhibiting domain is connected to the C-terminus of the Fc domain.
3. The fusion protein of claim 2, further comprising a linker between the Fc domain and the VEGF inhibiting domain.
4. The fusion protein of claim 1, wherein the antibody or antigen-binding fragment thereof comprises one or more pairs of polypeptide chains.
5. The fusion protein of claim 4, wherein the antibody is an IgG, IgE, IgM, IgD, IgA, or IgY antibody.
6. The fusion protein of claim 5, wherein the antibody is an IgG antibody.
7. The fusion protein of claim 6, wherein the IgG antibody is an IgG1, IgG2, IgG3, or IgG4 antibody.
8. The fusion protein of claim 7, wherein the IgG1 antibody is a reduction of antibody-dependent cell-mediated cytotoxicity of IgG1 antibody.
9. The fusion protein of claim 1, wherein the antibody is a human antibody.
10. The fusion protein of claim 1, wherein the heavy chain variable region comprises a sequence that is at least 90% sequence identity to the sequence to SEQ ID NO: 6, wherein the light chain variable region comprises a sequence that is at least 90% sequence identity to the sequence to amino acids 1-110 of SEQ ID NO: 5, and wherein the at least 90% sequence identity to the sequence to amino acids 1-110 of SEQ ID NO: 5 and to the sequence to SEQ ID NO: 6 excludes CDRs.
11. The fusion protein of claim 1, further comprising a therapeutic agent, wherein the therapeutic agent is covalently conjugated to the antibody or the antigen-binding fragment in the fusion protein by a linker.
12. A pharmaceutical composition, comprising: the fusion protein of claim 1, and at least one pharmaceutically acceptable carrier.
13. A fusion protein comprising an antibody or antigen-binding fragment thereof that comprises an at least one polypeptide chain, the at least one polypeptide chain comprising: a heavy chain variable region and a light chain variable region respectively, wherein the heavy chain variable region comprises complementarity-determining regions CDR1, CDR2, and CDR3 set forth in the sequence of SEQ ID NO: 6, and wherein the light chain variable region comprises complementarity-determining regions CDR1, CDR2, and CDR3 set forth in amino acid 1-110 of SEQ ID NO: 5; and a VEGF inhibiting domain comprising the amino acid sequence of SEQ ID NO: 9.
14. The fusion protein of claim 13, wherein the heavy chain variable region comprises a sequence that is at least 90% sequence identity to the amino acid sequence of SEQ ID NO: 6, wherein the light chain variable region comprises a sequence that is at least 90% sequence identity to the amino acid sequence of amino acids 1-110 of SEQ ID NO: 5, and wherein the at least 90% sequence identity to the sequence to amino acids 1-110 of SEQ ID NO: 5 and to the sequence to SEQ ID NO: 6 excludes CDRs.
15. The fusion protein of claim 13, wherein the antibody is a human antibody.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0039] The invention can be more fully understood by reading the following detailed description of the embodiment, with reference made to the accompanying drawings as follows:
[0040]
[0041]
[0042]
[0043]
[0044]
[0045]
[0046]
[0047]
[0048]
[0049]
[0050]
[0051]
[0052]
[0053]
[0054]
[0055]
DESCRIPTION OF THE INVENTION
[0056] Reference will now be made in detail to the present embodiments of the invention, examples of which are illustrated in the accompanying drawings. Wherever possible, the same reference numbers are used in the drawings and the description to refer to the same or like parts.
[0057] The present invention describes the expression, purification and characterization of bi-functional proteins with isolated functional VEGF inhibition domain to the C-terminal of Fc domain of anti-immune checkpoint protein antibodies. These proteins interact with its corresponding check point target shall transmit the inhibitory signal to modulate T-cell involved immunity and neutralized the VEGF-induced angiogenesis at the same time. The components of Fc fusion proteins in present invention are of all human origins, and thus are expected to be non-immunogenic and can be used as therapeutics in human.
[0058] Bispecific molecules such as bispecific antibodies (BsAbs) provide a means of simultaneously targeting multiple epitopes on the same molecular target or different targets with a single therapeutic agent. As cancer therapeutics, they have the potential to confer novel or more potent activities, lower the cost of goods and facilitate the development of new therapeutic regimens in contrast to a mixture of two mAbs (Chames and Baty, 2009; Hollander, 2009; Thakur and Lum, 2010). Recently, catumaxomab, a trifunctional bispecific antibody targeting human epithelial cell adhesion molecule (EpCAM) and CD3 has shown a clear clinical benefit in patients with peritoneal carcinomatosis of epithelial cancers (Heiss et al., 2010), and a bispecific T-cell engaging (BiTE) antibody with dual specificity for CD19 and CD3 has also demonstrated encouraging clinical activity in patients with CD19 expressing hematological malignancies (Bargou et al., 2008). Despite strong interest in the development of bispecific molecules as cancer therapeutics, technical challenges in the production of stable and active bispecific molecules have in the past hindered the clinical evaluation of most bispecific formats. Many engineered antibody formats, including an IgG-like bispecific antibody have compromised stability or solubility (Bargou et al., 2008; Demarest and Glaser, 2008; Lu et al., 2005). Furthermore, several strategies have been taken to increase the product quality and in vivo stability of bispecific molecules, including PEGylation, conjugation with human serum albumin and Fc engineering (Muller et al., 2007; Ridgway et al., 1996). Bispecific antibodies of the general form described above have the advantage that the nucleotide sequence encoding the two V-domains, single linker or one spacer can be incorporated into a suitable host expression organism under the control of a single promoter. This increases the flexibility with which these constructs can be designed as well as the degree of experimenter control during their production. In addition, the Fc of IgG is a very another attractive scaffold for designing novel therapeutics because it contains all antibody functions except the binding ability. Fc engineering is important for improving the effectiveness of the bispecific antibodies. Therefore, the IgG-based conformation is using in present invention for two independent target on immune cells or pro-angiogenic proteins in cancer therapy.
[0059] Targeting immune-check point proteins are promising approaches to activate antitumor immunity. Anti-check point proteins, such as PD-1, PD-L1, CTLA-4, LAG3, etc., are currently evaluated clinically (
[0060] The extracellular ligand binding domain (SEQ ID NO: 1 and 2) of a human VEGF receptor is capable of binding to a VEGF ligand, and comprises one or more of Ig-like domains D1-D7 (Table 1) of one or more VEGF receptors. Preferably, the extracellular ligand binding domain of the VEGF receptor comprises an Ig-like domain D2 of a first VEGF receptor and an Ig-like domain D3 of a second VEGF receptor, wherein the first and second VEGF receptors are the same or different VEGF receptors. In present invention, VEGF inhibition domain (VID), the extracellular ligand binding domain of the VEGF receptor comprises an Ig-like domain D2 of a VEGFR1 and an Ig-like domain D3 of a VEGFR2 to block the VEGF and reduce the angiogenesis.
TABLE-US-00001 TABLE 1 The amino acid sequence of Ig-like domains of human VEGF receptors Name SEQ ID NO: Sequence D1 of human 14 PELSLKGTQHIMQAGQTLHLQCRGEAAHK VEGF receptor 1 WSLPEMVSKESERLSITKSA D2 of human 15 GRELVIPCRVTSPNITVTLKKFPLDTLIPDG VEGF receptor 1 KRIIWDSRKGFIISNATYKEIGLLTCEATVN GH D3 of human 16 IDVQISTPRPVKLLRGHTLVLNCTATTPLNT VEGF receptor 1 RVQMTWSYPDEKNKRASVRRRIDQSNSH D4 of human 17 ANIFYSVLTIDKMQNKDKGLYTCRVRSGPS VEGF receptor 1 FKSVNTSVH TVKHRKQQVLETVAGKRSYRLSMKVKAFP SPEVVWLKDGLPATEKSARYLTRGYSLIIK DVTEEDAGNYTILLSIKQSNVFKNLTAT D5 of human 18 PQIYEKAVSSFPDPALYPLGSRQILTCTAY VEGF receptor 1 GIPQPTIKWFWHPCNHNHSEARCDFCSN NEESFILDADSNMGNRIESITQRMAIIEGKN KMASTLVVADSRISGIYICIASNKVGTVGRN ISFYIT D6 of human 19 PNGFHVNLEKMPTEGEDLKLSCTVNKFLY VEGF receptor 1 RDVTWILLRTVNNRTMHYSISKQKMAITKE HSITLNLTIMNVSLQDSGTYACRARNVYTG EEILQ D7 of human 20 PYLLRNLSDHTVAISSSTTLDCHANGVPEP VEGF receptor 1 QITWFKNNHKIQQEPGIILGPGSSTLFIERV TEEDEGVYHCKATNQKGSVESSAYLT D1 of human 21 NTTLQITCRGQRDLDWLWPNNQSGSEQR VEGF receptor 2 VEVTECSDGLFCKTLTIPKVIGNDTGAYKC FYRETDL D2 of human 22 NKNKTVVIPCLGSISNLNVSLCARYPEKRF VEGF receptor 2 VPDGNRISWDSKKGFTIPSYMISYAGMVF CEAKINDE D3 of human 23 YDVVLSPSHGIELSVGEKLVLNCTARTELN VEGF receptor 2 VGIDFNWEYPSSKHQHKKLVNRDLKTQSG SEMKKFLSTLTIDGVTRSDQGLYTCAASS GLMTKKNST D4 of human 24 FVAFGSGMESLVEATVGERVRIPAKYLGY VEGF receptor 2 PPPEIKWYKNGIPLESNHTIKAGHVLTIMEV SERDTGNYTVILTNPISKEKQSHVVS D5 of human 25 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIP VEGF receptor 2 PPHHIHWYWQLEEECANEPSQAVSVTNP YPCEEWRSVEDFQGGNKIEVNKNQFALIE GKNKTVSTLVIQAANVSALYKCEAVNKVG RGERVISFHVT D6 of human 26 PEITLQPDMQPTEQESVSLWCTADRSTFE VEGF receptor 2 NLTWYKLGPQPLPIHVGELPTPVCKNLDTL WKLNATMFSNSTNDILIMELKNASLQDQG DYVCLAQDRKTKKRHCVVRQLT D7 of human 27 PTITGNLENQTTSIGESIEVSCTASGNPPP VEGF receptor 2 QIMWFKDNETLVEDSGIVLKDGNRNLTIRR VRKEDEGLYTCQACSVLGCAKVEAFFI
[0061] In some embodiments, the VEGF inhibiting domain comprising an amino acid sequence of at least about 80% sequence homology to the amino acid sequence selected from the group consisting of SEQ ID NO: 1, 2, 9, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, and a combination thereof. In some examples, the VEGF inhibiting domain comprises an amino acid sequence of at least about 85%, 90%, or 95% sequence homology to the amino acid sequence as above mentioned.
[0062] The present invention describes the construction, expression and characterization of anti-immune checkpoint protein antibody Fc fused with VEGF inhibition domain (VID) from human VEGF receptor. The N-terminally positioned anti-PD-L1 antibody in fusion constructs shall allow expanding the power of fusion proteins beyond immune potentiating agent if the fusion counterpart is replaced by other immune checkpoints, such as anti-CTLA-4, CD3, OX40 antibodies or cell surface targeting molecule such as anti-EGFR, anti-HER2, and anti-CD40 antibodies for example.
[0063] The present disclosure provides bispecific antibody or antigen-binding portion thereof, comprising a binding domain binding cell surface protein; and a vascular endothelial growth factor (VEGF) inhibiting domain. In some embodiments, the binding domain binding the PD-L1 comprises: a heavy chain variable domain and a light chain variable domain. The heavy chain variable domain comprising an amino acid sequence of at least about 80% sequence homology to the amino acid sequence selected from the group consisting of SEQ ID NO: 4 and 6. In some examples, the heavy chain variable region comprises an amino acid sequence of at least about 85%, 90%, or 95% sequence homology to the amino acid sequence as above mentioned. The light chain variable domain comprising an amino acid sequence of at least about 80% sequence homology to the amino acid sequence selected from the group consisting of amino acid 1-111 of SEQ ID NO: 3 and 1-110 of SEQ ID NO: 5. In some examples, the light chain variable region comprises an amino acid sequence of at least about 85%, 90%, or 95% sequence homology to the amino acid sequence as above mentioned.
[0064] Antibody Generation from OmniMab Library
[0065] For the generation of therapeutic antibodies against PD-L1, selections with the OmniMab phagemid library were carried out. The phagemid library is generated by AP Biosciences Inc. (APBio Inc.) from a collection of over hundred health donors B cells. Phages for the 1 st round of pannings were prepared by Hyperphage (M13K07ΔρIII, Progen, Heidelberg, Germany). Solid phase panning and cell panning against PD-L1 were applied for PD-L1 specific binder selection and isolation from OmniMab library. Solid phase panning was performed using recombinant human PD-L1-Fc (APBio Inc.) in the first round selection and then HEK293 cells expressed PD-L1 were used for additional two rounds enrichment. After three rounds selection, the specific PD-L1 binders were screened and isolated by direct ELISA with corresponding recombinant protein (
[0066] Subcloning and Expression/Purification of Selected PD-L1 Specific Binder as IgG Format
[0067] To facilitate the quick screening of specific binder with functionality in T cell activation, the heavy chains and light chains of positive binders against PD-L1 by ELISA were then amplified, digested and sub-clone into APBio specialized IgG expression vector carrying IgG4 constant region (SEQ ID NO: 7). After sequence validation, the plasmids were then prepared and transfected into HEK293 cells for antibody expression with 293 fectin transfection reagent (Invitrogen). After 4 days culture, the antibody secreted into serum-free medium is affinity purified from culture supernatant by Protein G chromatography. Purified antibody is then concentrated, followed by dialysis in PBS buffer. The final concentration of dialyzed protein is determined by NanoDrop2000 spectrophotometer and the purity and integrity are determined by SDS-PAGE without reducing reagent as shown in the
[0068] Binding Activity Determination for PD-L1 Specific IgG Leads by Direct ELISA
[0069] Purified antibody leads against PD-L1 (anti-PD-L1 antibody leads) were then applied for ELISA binding characterization on human PD-L1-Fc in a direct coated setup.
[0070] Purified human PD-L1 IgG1 Fc chimera (PD-L1-Fc, APBio) was dialyzed in Phosphate Buffered Saline (PBS), adjusted to 1 mg/mL and then diluted with PBS to a final concentration of 1 μg/mL. Nunc-Immuno Maxisorp 96 well plates were coated with 0.1 mL per well of recombinant PD-L1-Fc chimera leaving empty wells for nonspecific binding controls and incubated at 4° C. overnight. The PD-L1-Fc chimera solution was removed and the plates were washed three times with 0.4 mL wash buffer (0.1% Tween-20 in PBS). 0.4 mL blocking buffer (5% low-fat milk powder in PBS) was added to all wells and incubated at room temperature for 1 hour with mixing. The blocking buffer was removed and plates washed three times with 0.4 mL wash buffer. Serial dilutions of the PD-L1 test antibodies were prepared in PBS and 0.1 mL diluted Ab was added per well. Plates were incubated 1 hour at room temperature. Antibody solution was removed and the plates washed three time with 0.4 mL wash buffer per well. Horseradish peroxidase labeled goat anti-human IgG, F(ab′).sub.2 specific F(ab′).sub.2 antibody (Jackson Immunoresearch #109-036-097) was diluted 1:2000 with PBS and added 0.1 mL per well. The plates were incubated 1 hour at room temperature and washed with 0.4 mL per well wash buffer. 0.1 mL TMB reagent (Invitrogen) was added and incubated for 1 to 5 minutes at room temperature. The reaction was stopped by adding 0.05 mL 1N HCl and absorbance was read at 450 nm on a Bio-Tek Spectra. Calculated EC50 for anti-PD-L1antibody leads to PD-L1 showed most leads possess good binding activity as well as MPDL3280A (Ref Ab) by direct ELISA (
[0071] Binding Activity Determination for PD-L1 Specific IgG Leads by FACS
[0072] Purified antibody leads (anti-PD-L1 antibody leads) were also applied for flow cytometry to determine and compare the binding activity with PD-L1 expressed HEK293 cells.
[0073] FACS analysis of PD-L1 stable expression 293 cells stained with anti-PD-L1 antibody leads to examine the PD-L1 binding activity, stable expression cells were incubated with 1 μg/mL purified anti-PD-L1 antibody leads, reference antibody (Ref Ab MPDL3280A) or with isotype antibody as negative control on ice for 1 hr. The cells were washed three times with 1×PBS and then incubated with Alexa-488-conjugated goat anti-human IgG (H+L) (Invitrogen Inc.) on ice for additional 1 hr. After staining, the cells were washed three times with 1×PBS, resuspended in 1×PBS/2%FBS before analyzed by FACS Calibur (BD Biosciences, Inc.) and FlowJo (TreeStar, LLC). As shown in the
[0074] Ligand Competition Binding (ELISA Assay)
[0075] Antibody leads were showed the binding selectivity and affinity assay used to evaluate the anti-PD-L1 antibody leads of present invention for their ability to block binding of PD-L1 to PD-1.
[0076] Antibodies were tested for their ability to block the binding of the human PD-L1-Fc chimera (PD-L1-Fc) to recombinant human PD-1/His (hPD-1/His) by ELISA. Purified recombinant hPD-1/His (APBio) was dialyzed to 1 mg/mL in PBS and then conjugated with biotin (Abcam). Nunc Maxisorp 96 well pate was coated with 250 ng hPD-1/His per well in PBS overnight. The hPD-1/His solution was removed and the plates were washed three times with 0.4 mL wash buffer (0.1% Tween-20 in PBS). 0.4 mL blocking buffer (5% low-fat milk powder in PBS) was added to all wells and incubated at room temperature for 1 hour with mixing. During the blocking step the antibody stocks were diluted in a range from 200 nM to 0 nM in PBS with 2 folds serial dilution. Purified recombinant biotinylated-PD-L1-Fc chimera was diluted to 4 μg/mL in PBS. The PD-1/His coated plates were washed three times with 0.2 mL wash buffer (0.1% Tween 20 in PBS). 60 μL antibody dilutions (anti-PD-L1 antibody leads or Ref Ab MPDL3280A) were added alone with 60 μL biotinylated-PD-L1-Fc chimera and incubated at room temperature for 1 hour. Plates were washed as described previously. Streptavidin-HRP was diluted 1:2000 in PBS, 100 μL of the resulting solution added to the wells of the washed plated, and incubated at room temperature for 1 hour. Plates were washed as previously described, 100 μL TMB substrate solution was added to each well and incubated for 10 minutes. The reaction was stopped with 50 μL 1N HCl and absorbance at 450 nm read using Bio-Tek reader and showed in
[0077] Enhanced Stimulation of T Cell Activation by Inhibition of PD-1:PD-L1 Ligand Interaction for Anti-PD-L1 Antibody
[0078] The PD-1 signaling pathway inhibits moderate TCR/CD28 costimulatory signals, with cytokine production being reduced first without a decrease in T cell proliferation. As the TCR/CD28 costimulatory signals weaken, the PD-1 pathway dominates, with a great reduction in cytokine production accompanied by a reduction in proliferation. Accordingly, in order to confirm that the inhibition of the PD-1 via inhibition of the interaction with PD-L1, human antibodies of the invention enhances T cell activation, mixed lymphocyte reactions (MLRs) are performed.
[0079] Monocytes from human whole blood were enriched by RosetteSep™ Human Monocyte Enrichment Cocktail (Cat. No.15068) and cultured in differentiation medium, RPMI 1640 with 10% FBS, 100 ng/mL (1000 U/mL) GM-CSF, 100 ng/mL (500 U/mL) for 6 days. The differentiate dendritic cells (DC) from monocyte were checked by DC-SIGN-PE, anti-CD14 conjugated with FITC Ab, anti-CD83 conjugated with PE Ab, or anti-CD80 conjugated with FITC Ab to validate the differentiation and used to be APCs in MLRs.
[0080] Allogenic CD4.sup.+ T cells from human whole blood were isolated by RosetteSep™ Human CD4.sup.+ T Cell Enrichment Cocktail (Cat. NO. 15062). The purity of CD4+ T cells were checked with anti-CD4 conjugated APC Ab to make sure the purity is above 95% and then labeled with 1 μM CFSE (CellTrace™ CFSE cell proliferation kit, Life technologies, Cat. NO. C34554) for T cells proliferation assay. Labeled CD4.sup.+ T cells were used to co-culture with immature DC with different antibody leads as indicated for 3 and 5 days to see whether the antibody leads could restore the T cell activation through blocking the interaction between PD-1 and PD-L1. After 3 and 5 days incubation, the supernatant were collected for cytokine, such as IL-2 and IFN-γ quantitation by ELISA. The addition of anti-PD-L1 antibody leads (clones 6, 32, 28, 51, 64, 27, and 37) to cultures of immature dendritic cells plus allogeneic T cells is predicted to result in an increase in T cell proliferation and cytokine production, as compared to isotype IgG (iso#1, #2) treated cultures and showed in the
[0081] Construction, Expression and Purification of Anti-PD-L1-VID Antibody
[0082] Since the bispecific is designed as IgG based fused with VEGF inhibition domain, the anti-PD-L1 antibody clone 6 is assigned to be IgG form, on the other hand, the VEGF binding domain, D1 and D2, in VEGF receptor is fused at C-terminal of Fc region in anti-PD-L1 clone 6 antibody. Since Fc isotype or engineered Fc is important for improving the effectiveness or production of the bispecific antibodies in mammalian cells; therefore, two different Fc isotype, IgG4 (SEQ ID NO: 7) and engineered IgG1 (eIgG1, reduction of antibody-dependent cell-mediated cytotoxity (ADCC), SEQ ID NO: 8) were used to bispecific construction. Construction of bispecific anti-PD-L1 antibody Fc fused with VID (SEQ ID NO: 9) was depicted in
[0083] As shown in
[0084] Binding Affinity of the Fusion Proteins to PD-L1 and VEGF.sub.165
[0085] A direct binding enzyme-linked immunosorbent assay (ELISA) was used to measure the binding affinity of the bispecific antibodies to PD-L1 or VEGF.sub.165, a splice variant of VEGF-A. A recombinant VEGF trapping protein (VEGFR-Fc) and parental anti-PD-L1 antibody clone 6 was used as positive control 1 for PD-L1 and VEGF, respectively. VEGFR-Fc, aflibercept, is a soluble VEGF receptor that was engineered for therapeutic use and is currently approved by U.S. food and drug administration (FDA) to treat age-related macular degeneration (AMD). VEGFR-Fc contains the second Ig-like domain (D2) of VEGFR1 fused to the third Ig-like domain (D3) of VEGFR2 fused to the Fc region of human IgG1 (Holash et al., 2002).
[0086] 100 μL of a coating solution (1 μg/mL VEGF.sub.165 in phosphate buffered saline (PBS), pH 7.2) were added to each well of a 96-well ELISA plate, and the plate was incubated overnight at 4° C. The wells were washed twice with 400 μL PBS buffer, and excess liquid was carefully removed with a paper towel. 400 μL of a blocking solution (5% non-fat skim milk in PBS) was added to each well, and the plate was incubated at room temperature for 1 hour. The wells were washed twice with PBS buffer. Bispecific antibody and control samples were serially diluted three-fold in blocking solution, with the highest protein concentration of 100 nM. 100 μL of the serially diluted samples were added to each well.
[0087] The plate was covered and incubated on a plate shaker (about 100 rpm) for 1 hour at room temperature. The wells were washed three times with wash buffer (0.05% Tween-20 in PBS). 100 μL of 1:2500 diluted horseradish peroxidase-conjugated goat anti-human IgG Fc specific antibodies in blocking solution were added to each well. The plates were sealed and incubated on a plate shaker for 1 hour at room temperature. The plates were washed three times with wash buffer. 100 μL TMB substrate was added to each well, and the plates were incubated for 3 to 5 minutes to allow for the reaction to take place. To stop the reaction, 100 μL of stop solution (1 N HCl) was added to each well. The optical density (OD) of each well was determined using an ELISA plate reader (Bio-Tek) at an absorbance wavelength of 450 nm. The absorbance was plotted against the protein concentration of the fusion protein or the control, and the concentration at which the signal was half the maximal effective concentration (EC50) was determined. Meanwhile, the binding activity of PD-L1 for both bispecific antibodies was also performed as a similar scenario as described above, except the bound bispecific antibodies were detected by horseradish peroxidase-conjugated goat anti-human IgG, F(ab′)2 specific F(ab′)2 antibody.
[0088] As the data shown in the
[0089] Inhibition of HUVEC Proliferation by the Anti-PD-L1-VID Bispecific Antibodies
[0090] A human umbilical vein endothelial cell (HUVEC) proliferation assay was carried out to test the functionality of the bispecific antibody in the invention. VEGFR-Fc was used as a positive control as described above. 100 μL of a coating solution (1% gelatin in double distilled water) were added to each well of a 96-well ELISA plate, and the plate was incubated for 2 hours or overnight at 37° C. The wells were washed twice with PBS buffer. 3500 cells of HUVEC cells in endothelial cell growth medium were added to each well, and the plate was incubated overnight at 37° C. Sample as indicated were diluted in assay buffer (Medium-199 1× Earle's Salts, 10% fetal bovine serum, 10 mM HEPES, 1× antibiotic/antimycotic), with a highest protein concentration of 30 nM. The samples were mixed with VEGF.sub.165 (8 ng/mL), and the mixtures were incubated overnight at room temperature. The wells were then washed with 200 μL PBS. 100 μL VEGF.sub.165/sample mixture were added to each well, and the plates were incubated for 72 hours at 37° C. with 5% CO2. Following incubation, 10 μL MTS detection reagent (3-(4,5-dimethylthiazol-2-yl)-5 -(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium)+phenazine methosulfate in distilled PBS) was added to each well, and the plates were incubated at 37° C. for 2.5 hours. The OD of each well was determined using an ELISA plate reader (Bio-Tek) at an absorbance wavelength of 490 nm. The absorbance was plotted against the protein concentration of the test sample, and the concentration at which the cell proliferation was inhibited by 50% (IC50) was determined. The inhibition of cell proliferation (IC50) was determined to be between 0.1070 and 0.1233 nM for the tested fusion proteins of the invention. One of the bispecific antibodies, anti-PD-L1-VID/eIgG1, revealed a better inhibition than another bispecific antibody, anti-PD-L1-VID/IgG4 (
[0091] Enhanced Stimulation of T Cell Activation for Anti-PD-L1-VID/eIgG1 Bispecific Antibody Leads in MLRs
[0092] To determine the antagonistic functionality of bispecific antibody in enhancing T cells activation through inhibition the interaction between PD-1 and PD-L1. The bispecific antibody leads, anti-PD-L1-VID/eIgG1 antibody, were applied into MLRs as described above. IL-2 and IFN-γ production were then recorded after 3 or 5 days antibody treatment. Mono- or bispecific antibody was applied as an equal mole to compare the antagonistic functionality in T cell activation enhancement and isotype IgG was used a negative control. As the data shown in the
[0093] In Vitro Serum Stability of Anti-PD-L1-VID/eIgG1 Bispecific Antibody
[0094] Purified anti-PD-L1-VID/eIgG1 were incubated with serum (15 μg/mL) from different species as indicated at 37° C. in water bath. Serum samples containing the purified bispecific antibodies were taken at different time points up to 14 days. Concentrations of the bispecific antibody in the serum samples will be determined using a sandwiched ELISA assay as below. VEGF.sub.165 (1 μg/mL) pre-coated wells were incubated with titrated concentrations of purified anti-PD-L1-VID/eIgG1 bispecific antibody to be the standard curve to calculate the Abs concentration in the serum (fresh preparation, day 0). Collected samples from different time points were also applied to pre-coated VEGF.sub.165 wells for detection. After washing with 0.1% Tween-20 in PBS, the intact and bound Abs were detected by biotinylated PD-L1-Fc and HRP conjugated streptavidin before color developing. The concentration of Abs in the serum was calculated by interpolation method and then the half-life of Abs is plotted as shown in the
[0095] Anti-Tumor Activity of Bispecific Antibody (In Vivo Model)
[0096] The lack of rodent cross-reactivity of the PD-L1 in bispecific antibodies prevented the use of standard murine syngeneic or human xenograft tumor models for the assessment of anti-human tumor efficacy of the antibodies. Accordingly, a novel huPBL-SCID-Bg xenogeneic tumor mouse model was generated using a SCID-Bg mouse (CB.17/Icr.Cg Pkrdc.sup.scidLyst.sup.bg/Crl), which harbors the beige (Bg) mutation lack murine T and B lymphocytes and functional NK cells. The anti-human tumor efficacy of the bispecific antibodies was assessed using this model as described below.
[0097] The PC-3 human prostate was obtained from American Type Culture Collection and was cultured in RPMI-1640 (Invitrogen) with L-glutamine, sodium pyruvate, penicillin/streptomycin, and 10% heat-inactivated fetal bovine serum (FBS, Gibco Cat. No. 10437). Cells were grown to confluency in T-150 Falcon flasks. Subsequently, cells were trypsinized (Trypsin 0.25%-EDTA; Invitrogen) and growth was scaled up to sufficient cell number for inoculation. Peripheral blood lymphocytes (PBMCs) were isolated from heparinized blood using Lymphoprep™ in accordance with the manufactures' protocol (STEMCELL Technologies Inc.). Counted cell suspensions were combine such that each mouse received an injection of 0.75×10.sup.6 PBMCs and 3×10.sup.6 tumor cells in a single bolus injection of 0.1 mL in PBS. In order to facilitate the tumor cells grown in the mouse, another 0.1 mL matrigel was then mixed with the combined cell suspension and then immediately injected into prepare mice.
[0098] For each mouse, 0.2 mL volume of the combined cell suspension was injected subcutaneously into the right flank of the animal. After 7 days inoculation, the solid tumor is formed and reached around ˜100 mm.sup.3 and the bispecific antibody (10 mg/kg) or control antibody is challenged twice per week for three to four weeks with an intraperitoneal injection (i.p.). Tumor measurement was made via Pressier caliper twice per week as well as test sample administration for the duration of the experiments and body weights were also recorded. Tumor volume was calculated using the following calculation: length×width.sup.2×0.44=volume (mm.sup.3) and plotted in the
[0099] Collectively, these results indicated bi-specific antibody sustain its immune checkpoint blocking in PD-1/PD-L1 signaling and neutralized the pro-angiogenic protein, VEGF. Studies are ongoing to further investigate the biological activity of these proteins using proper animal model, such as the PC-3 tumor in the humanized NOD.Cg-Prkdc.sup.scid II2rg.sup.tmIwjI/SzJ (NSG) model.
[0100] The Fc region in the present invention could be from any immunoglobulin isotypes, subclasses, allotypes, or engineered mutants, such as knob and hole Fc fragment(s).
EXAMPLES
[0101] The example below describe the generation of monoclonal antibodies suitable for therapeutic purpose targeting human PD-L1 and VEGF. Composite, human anti—human PD-L1 and VEGF neutralized domains were generated from anti-PD-L1 antibody clone 6 and VEGF trapping domain from human VEGF receptors, respectively. Segments of human V region sequence were sourced from unrelated human antibody (germline and non-germline) sequence databases.
Example 1 Generation of IgG Antibodies That Bind to PD-L1 and VEGF
[0102] Certain antibodies provided by present invention were originally generated from Fabs bind to human PD-L1. The Fabs were selected from a phage display library, the OmniMab phagemid library, following alternating panning on corresponding Fc fusion proteins (PD-L1-Fc) and cells expressing human corresponding protein (PD-L1). After direct ELISA screening, the positive clones were then sequenced for heavy chain and light chain. These Fabs included those that are designated as “OM-PD-L1-6”, and “OM-PD-L1-32” etc. for PD-L1. PD-L1 antibodies PD-L1-Clone 6, and PD-L1-Clone 32 disclosed in this application were generated from “OM-PD-L1-6” and “OM-PD-L1-32” in HEK293 cell or CHO-S cells. And bispecific antibody targeting PD-L1 and VEGF simultaneously was designed as anti-PD-L1-VID (VEGF inhibition domain) antibody. The amino acid sequence of the light chain variable region and heavy chain variable region of a given Fab are identical to the amino acid sequence of the light chain variable region and heavy chain variable region, respectively.
Example 2 In Vitro Binding of Anti-PD-L1-VID Bispecific Antibody to its Corresponding Target
[0103] Anti-PD-L1-VID bispecific antibody was constructed as shown in the
Example 3 Antigen Binding Specificity of Anti-PD-L1-VID by FACS Analysis
[0104] To test anti-PD-L1-VID Abs binding specificity, stable PD-L1 expression 293 cells (human embryonic kidney cells), IFN-y stimulated A549 (lung carcinoma) or NCI-H292 (mucoepidermoid pulmonary carcinoma) were stained a 3-folds serial dilution from 30 nM with 1 μg/mL anti-PD-L1-VID Abs antibody for 1 hr on ice before wash three times with 1×PBS. The bound antibody fusion proteins were detected with Alexa-488 conjugated goat IgG (H+L) followed by FACS analysis. Isotype antibody was used as negative control for the test. Results showed anti-PD-L1-VID Abs sustains its antigen binding specificity as compared with anti-PD-L1 alone (
Example 4 In Vitro Immunomodulatory Effect of Anti-PD-L1-VID Bi-Specific Antibody
[0105] To measure the ability of the anti-PD-L1-VID Abs to modulate T cell responsiveness purified T cells will be cultured with allogeneic dendritic cells, prepared by culturing monocytes in GM-CSF and IL-4 for few days. Parallel plates were set up to allow collection of supernatants at day 3 and day 5 to measure IL-2 and IFN-γ respectively using a commercial ELISA kit. Genentech/Roche's humanized anti-PD-L1, MPDL3280A, will be produced in-house and used as positive control. As the data shown in the
Example 5 Human Leukocyte Expansion Induced by Bispecific Antibodies in Vivo
[0106] The lack of detectable cross-reactivity of the PD-L1 antibody with murine PD-L1 and the requirement for the presence of human immune cells required the development of models for the in vivo functional assessment of the bispecific antibodies. Mice with the NOD genetic background carrying the severe combined immunodeficient (SCID) mutation and deficiency in the IL-2 receptor common gamma chain (commonly termed NSG) are able to support the engraftment of large number of human peripheral blood leukocytes (huPBL) and maintain engraftment for at least 30 days (King et al., 2008). This mouse model, also known as huPBL-NSG model, was used to assess the functional effect of in vivo systemic administration of the antibodies on human immune cells.
[0107] Specifically, 6 million freshly isolated human PBMCs were adoptively transferred via intravenous injection into huPBL-NSG mice. Nine days post PBMC injections, the animals were administered a single 1 mg/kg of mono-antibody, bispecific antibody or isotype control antibody via intraperitoneal injection. At day 24 to 28 post PBMC engraftment, PBMC were stained with antibodies to human and murine CD45 assessed via flow cytometry. Forward and side scatter profiles were used to determine a lymphocyte gate. Bispecific antibodies were able to enhance expansion of human leukocytes as evidenced by increased proportion of human CD45.sup.+ cells in the peripheral blood of engrafted mice. For each group, n≥6 mice.
Example 6 Inhibition of PC-3 or A498 Tumor Cell Growth in huPBL-NSG by Anti-PD-L1-VID/eIgG1 Antibody
[0108] PD-L1 positive human prostate cancer cell line, PC-3 (ATCC#CRL-1435) or kidney cancer cell line, A498 (ATCC® HTB-44™) can be used to establish xenograft models in huPBL-NSG mice. For tumor formation, 3×10.sup.6 PC-3 cells (or A498 cells)/mouse will be injected subcutaneously in huPBL-NSG mice as described above. In order to assess the inhibitory effects on the tumor growth, different concentrations of anti-PD-L1-VID/eIgG1 antibody, reference antibody, or isotype antibody from 0.1-3 mg/kg will be administered intravenously twice weekly for 4 weeks in the mice after 14 days tumor cells implantation. The tumor growth will be measured twice per week up to 5 weeks as described in the Fox Chase SCID®Beige mice model.
Example 7 Pharmacokinetic Assessment of Anti-PD-L1-VID/eIgG1 in Mice and Monkeys
[0109] 10 mg/kg to 40 mg/kg of bi-functional proteins, anti-PD-L1-VID/eIgG1 will be administered into mice or monkeys via subcutaneous injection or intravenous injection. Serum samples will be taken at different time points after the injection up to 15 days. Concentrations of the Fc fusion protein in the serum samples will be determined using a sandwiched ELISA assay.
[0110] While the disclosure has been described by way of example(s) and in terms of the preferred embodiment(s), it is to be understood that the disclosure is not limited thereto.
[0111] On the contrary, it is intended to cover various modifications and similar arrangements and procedures, and the scope of the appended claims therefore should be accorded the broadest interpretation so as to encompass all such modifications and similar arrangements and procedures.