BINDING PROTEIN HAVING H2L2 AND HCAB STRUCTURES
20230322953 · 2023-10-12
Assignee
Inventors
- Yun He (Shanghai, CN)
- Lei Shi (Shanghai, CN)
- Haishan LUO (Shanghai, CN)
- Qiang Lv (Shanghai, CN)
- Jinqiu HE (Shanghai, CN)
- Zenglin PEI (Shanghai, CN)
- Yongqiang Wang (Shanghai, CN)
- Chen ZHONG (Shanghai, CN)
- Bing HUANG (Shanghai, CN)
- Jianxun ZHAO (Shanghai, CN)
- Xingxing JIA (Shanghai, CN)
- Xuekun ZHANG (Shanghai, CN)
- Chuchu ZHAO (Shanghai, CN)
- Fei Chen (Shanghai, CN)
- Lei NIU (SHANGHAI, CN)
Cpc classification
C07K2317/569
CHEMISTRY; METALLURGY
C07K2317/51
CHEMISTRY; METALLURGY
C07K2317/33
CHEMISTRY; METALLURGY
C07K2317/732
CHEMISTRY; METALLURGY
C07K2317/73
CHEMISTRY; METALLURGY
C07K2317/70
CHEMISTRY; METALLURGY
C07K2317/92
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
C07K16/2809
CHEMISTRY; METALLURGY
C07K2317/66
CHEMISTRY; METALLURGY
C12N15/63
CHEMISTRY; METALLURGY
C07K2317/94
CHEMISTRY; METALLURGY
C07K2317/64
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
C07K16/2878
CHEMISTRY; METALLURGY
International classification
C12N15/63
CHEMISTRY; METALLURGY
Abstract
Disclosed is a binding protein having at least two protein functional regions, the binding protein comprising a protein functional region A and a protein functional region B; the protein functional region A and the protein functional region B target different antigens or epitopes, the protein functional region A is a Fab or a scFv structure, the protein functional region B is a VH structure, and there are one or more of each of the protein functional region A and the protein functional region B. A multi-specific binding protein has a smaller molecular weight, fewer polypeptide chains, and a simpler structure. By means of different structure types, relative positions, binding valence and other parameters, the functional activities for different targets can be adjusted, and then different combinations of activities can be designed so as to meet the needs of different dose combinations of clinical combinations.
Claims
1-19. (canceled)
20. A binding protein comprising at least two protein functional regions, wherein the binding protein comprises a protein functional region A and a protein functional region B, wherein the protein functional region A and the protein functional region B target different antigens or antigenic epitopes, the protein functional region A is of a Fab or scFv structure, the protein functional region B is of a VH structure, and the number of each of the protein functional region A and the protein functional region B is one or more, wherein: (A) the binding protein has three polypeptide chains, including one polypeptide chain 1, one polypeptide chain 2 and one polypeptide chain 3, wherein (14) the polypeptide chain 1 comprises VL_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VH_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (11) the polypeptide chain 1 comprises VL_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VH_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (12) the polypeptide chain 1 comprises VH_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (13) the polypeptide chain 1 comprises VH_A-CH1 sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CL-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (15) the polypeptide chain 1 comprises VL_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VH_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_C-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (16) the polypeptide chain 1 comprises VH_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (17) the polypeptide chain 1 comprises VH_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_C-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (18) the polypeptide chain 1 comprises VH_A-CH1 sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CL-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (19) the polypeptide chain 1 comprises VH_A-CH1 sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VL_A-CL-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_C-L-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (26) the polypeptide chain 1 comprises VL_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VH_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_B-L1-VH_B-L2-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (27) the polypeptide chain 1 comprises VL_A-CL sequentially from the N-terminus to the C-terminus, the polypeptide chain 2 comprises VH_A-CH1-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 3 comprises VH_D-L1-VH_C-L2-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; wherein the L, L1 and L2 are linker peptides, and the h is a hinge region or linker peptide such as “-”, GS or an amino acid sequence as set forth in any one of SEQ ID NOs: 495-519, (B) the binding protein has two polypeptide chains, including one polypeptide chain 1 and one polypeptide chain 2, wherein (23) the polypeptide chain 1 comprises VH_A-L1-VL_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_B-L2-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (20) the polypeptide chain 1 comprises VL_A-L-VH_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (21) the polypeptide chain 1 comprises VH_A-L-VL_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (22) the polypeptide chain 1 comprises VL_A-L1-VH_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_B-L2-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (24) the polypeptide chain 1 comprises VL_A-L1-VH_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_C-L2-VH_B-CH2-CH3 sequentially from the N-terminus to the C-terminus; or (25) the polypeptide chain 1 comprises VH_A-L1-VL_A-h-CH2-CH3 sequentially from the N-terminus to the C-terminus, and the polypeptide chain 2 comprises VH_C-L2-VH_B-h-CH2-CH3 sequentially from the N-terminus to the C-terminus; wherein the L, L1 and L2 are linker peptides, and the h is a hinge region or linker peptide such as “-”, GS or an amino acid sequence as set forth in any one of SEQ ID NOs: 495-519; or, (C) the binding protein has four polypeptide chains, including two identical short chains and two identical long chains, wherein (1) the short chain comprises VH_A-CH1 sequentially from the N terminus to the C terminus, and the long chain comprises VL_A-CL-L1-VH_B-L2-CH2-CH3 sequentially from the N terminus to the C terminus; or (2) the short chain comprises VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-L1-VH_B-L2-CH2-CH3 sequentially from the N terminus to the C terminus; or (3) the short chain comprises VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_B-L-VH_A-CH1-h-CH2-CH3 sequentially from the N terminus to the C terminus; or (4) the short chain comprises VH_B-L-VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-h-CH2-CH3 sequentially from the N terminus to the C terminus; or (5) the short chain comprises VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-h-CH2-CH3-L-VH_B sequentially from the N terminus to the C terminus; or (6) the short chain comprises VL_A-CL-L-VH_B sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-h-CH2-CH3 sequentially from the N terminus to the C terminus; or (7) the short chain comprises VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-h-CH2-CH3-L1-VH_B-L2-VH_B sequentially from the N terminus to the C terminus; or (8) the short chain comprises VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_A-CH1-h-CH2-CH3-L1-VH_B-L2-VH_C sequentially from the N terminus to the C terminus; or (9) the short chain comprises VH_B-L1-VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_B-L2-VH_A-CH1-h-CH2-CH3 sequentially from the N terminus to the C terminus; or (10) the short chain comprises VH_B-L1-VL_A-CL sequentially from the N terminus to the C terminus, and the long chain comprises VH_C-L2-VH_A-CH1-h-CH2-CH3 sequentially from the N terminus to the C terminus; wherein the L, L1 and L2 are linker peptides, and the h is a hinge region or linker peptide, such as “-”, GS or an amino acid sequence as set forth in any one of SEQ ID NOs: 495-519.
21. The binding protein according to claim 20, wherein the protein functional region A or the protein functional region B is selected from one of a CD3 antibody, a BCMA antibody, a PD-L1 antibody, an HER2 antibody, a B7H4 antibody, a CTLA4 antibody and a 4-1BB antibody.
22. The binding protein according to claim 20, wherein the protein functional region A is a CD3 antibody, a PD-L1 antibody, an HER2 antibody or a B7H4 antibody, and the protein functional region B is a BCMA antibody, a CTLA4 antibody or a 4-1BB antibody.
23. The binding protein according to claim 20, wherein the protein functional region A is a CD3 antibody, and the protein functional region B is a BCMA antibody; or, the protein functional region A is a PD-L1 antibody, and the protein functional region B is a CTLA4 antibody; or, the protein functional region A is a PD-L1 antibody, and the protein functional region B is a 4-1BB antibody; or, the protein functional region A is an HER2 antibody, and the protein functional region B is a CTLA4 antibody; or, the protein functional region A is a B7H4 antibody, and the protein functional region B is a 4-1BB antibody.
24. The binding protein according to claim 20, wherein the CD3 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; or the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 20, 68 and 128, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; or the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 245, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 257; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 281; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 244; or, the CD3 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 221, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 84 and 141, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 178, 197 and 222; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 223, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 86 and 141, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 179, 198 and 224, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 294; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 258; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 295; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 259; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 296; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 260; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 297; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 259; and, the BCMA antibody comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 75 and 133, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences set forth in SEQ ID NOs: 24, 76 and 134, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences set forth in SEQ ID NOs: 25, 77 and 135, respectively; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 248; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 249; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 250; or, the BCMA antibody comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 90 and 136; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 78 and 147; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 147, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 36, 90 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 147, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 148, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 136, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 136, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NO 35, 76 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 148, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 136, respectively; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 265; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 266; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 267; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 268; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 269; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 270; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 271; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 272; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 273; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 274; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 275; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 276; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 277; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 278; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 279; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 280; and the PD-L1 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 62 and 122, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 69 and 122, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 233; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 240; and, the PD-L1 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 169, 190 and 213, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 16, 64 and 124, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 284; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 235; and, the HER2 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NO: 171, 190 and 215, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 19, 67 and 127, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 176, 196 and 220, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 23, 74 and 132, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 286; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 238; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 293; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 247; and, the B7H4 antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 180, 191 and 225, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 32, 87 and 143, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 226, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 33, 88 and 144, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 298; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 261; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 299; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 262; and, the CTLA4 antibody comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 17, 65 and 125, respectively; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 236; and, the 4-1BB antibody comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NO: 170, 191 and 214, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 18, 66 and 126, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 170, 191 and 214, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 18, 71 and 126, respectively; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 285; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 237; or, the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 289; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 242; and, the 4-1BB antibody comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 27, 79 and 137, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 80 and 138, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 29, 82 and 138, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 89 and 145, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 81 and 139, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 83 and 140, respectively; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 252; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 253; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 255; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 264; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 254; or, the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 256.
25. The binding protein according to claim 20, (A) comprising a protein functional region A and a protein functional region B, wherein: the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 20, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 90 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 36, 90 and 146, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 147, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 148, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 146, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 146, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 146, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 148, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 146, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 78 and 147, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 147, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 221, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 84 and 141, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 178, 197 and 222, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 223, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 86 and 141, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 179, 198 and 224, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 20, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 24, 76 and 134, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 20, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 75 and 133, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 75 and 133, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 69 and 122, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 17, 65 and 125, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 62 and 122, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 17, 65 and 125, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 171, 190 and 215, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 19, 67 and 127, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 17, 65 and 125, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 176, 196 and 220, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 23, 74 and 132, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 17, 65 and 125, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 69 and 122, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 80 and 138, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 69 and 122, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 27, 79 and 137, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 167, 188 and 211, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 69 and 122, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 29, 82 and 138, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 180, 191 and 225, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 32, 87 and 143, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 80 and 138, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 180, 191 and 225, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 32, 87 and 143, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 27, 79 and 137, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 180, 191 and 225, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 32, 87 and 143, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 89 and 145, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 226, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 33, 88 and 144, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 80 and 138, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 226, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 33, 88 and 144, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 28, 81 and 139, respectively; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 226, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 33, 88 and 144, respectively; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 83 and 140, respectively; or, (B) comprising a protein functional region A, a protein functional region B and a protein functional region C, wherein: the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 25, 77 and 135, respectively; and the protein functional region C comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; or the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; and the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 75 and 133, respectively; and the protein functional region C comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 24, 76 and 134, respectively.
26. The binding protein according to claim 20, (A) comprising a protein functional region A and a protein functional region B, wherein: the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 245; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 257; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 281; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 265; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 269; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 270; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 271; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 272; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 273; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 274; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 275; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 276; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 277; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 278; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 279; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 280; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 266; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 267; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 263; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 268; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 244; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 249; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 244; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 294; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 258; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 295; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 259; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 296; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 260; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 297; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 259; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 245; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 249; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 245; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 248; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 257; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 248; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 240; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 236; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 233; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 236; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 286; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 238; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 236; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 293; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 247; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 236; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 240; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 253; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 240; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 252; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 282; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 240; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 255; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 298; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 261; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 253; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 298; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 261; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 252; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 298; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 261; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 264; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 299; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 262; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 253; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 299; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 262; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 254; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 299; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 262; and the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 256; or, (B) comprising a protein functional region A, a protein functional region B and a protein functional region C, wherein: the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 257; the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 250; and the protein functional region C comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 251; or, the protein functional region A comprises a light chain variable region and a heavy chain variable region, wherein the light chain variable region VL comprises an amino acid sequence as set forth in SEQ ID NO: 291; and the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 257; the protein functional region B comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 248; and the protein functional region C comprises a heavy chain variable region, wherein the heavy chain variable region VH comprises an amino acid sequence as set forth in SEQ ID NO: 249.
27. The binding protein according to claim 20, (1) comprising two polypeptide chains, wherein, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 371; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 372; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 371; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 373; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 362; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 364; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 365; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 364; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 366; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 369; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 370; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 394; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 395; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 310; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 396; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 362; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 394; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 363; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 395; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 368; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 378; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 379; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 380; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 381; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 382; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 383; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 385; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 388; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 389; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 374; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 375; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 386; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 387; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 401; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 402; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 305; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 403; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 402; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 409; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 359; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 404; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 405; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 315; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 359; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 406; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 376; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 377; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 397; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 398; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 399; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 400; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 402; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 401; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 402; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 403; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 405; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 404; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 405; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 406; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 371; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 486; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 460; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 461; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 462; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 487; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 488; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 455; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 456; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 457; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 458; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 459; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 419; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 412; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 419; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 414; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 440; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 428; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 441; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 428; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 442; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 428; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 443; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 428; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 487; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 520; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 521; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 371; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 522; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 360; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 523; or, (2) comprising three polypeptide chains, wherein, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 445; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 446; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 463; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 464; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 411; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 414; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 415; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 416; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 414; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 417; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 418; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 414; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 423; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 427; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 423; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 428; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 423; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 429; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 444; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 449; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 450; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 449; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 444; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 445; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 444; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 446; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 450; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 445; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 450; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 446; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 444; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 447; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 444; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 448; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 450; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 447; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 450; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 448; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 465; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 466; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 467; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 468; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 469; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 470; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 471; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 472; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 473; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 474; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 475; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 476; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 477; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 478; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 479; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 454; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 480; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 407; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 390; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 353; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 408; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 392; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 391; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 390; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 393; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 392; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 391; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 434; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 391; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 435; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 393; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 436; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 351; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 393; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 437; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 438; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 434; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 438; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 435; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 439; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 436; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 367; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 439; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 437; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 361; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 481; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 482; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 361; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 481; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 483; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 361; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 481; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 484; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 361; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 481; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 485; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 411; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 412; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 415; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 416; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 410; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 415; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 416; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 412; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 417; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 418; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 412; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 423; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 426; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 423; and a third polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 430.
28. The binding protein according to claim 20, wherein the binding protein further comprises a light chain constant region and/or the binding protein further comprises CH1, CH2 and/or CH3 of a heavy chain constant region.
29. An isolated nucleic acid encoding the binding protein according to claim 20.
30. An expression vector comprising the isolated nucleic acid according to claim 29.
31. A pharmaceutical composition comprising the binding protein according to claim 20.
32. A combination of kits comprising a kit I comprising the binding protein according to claim 20, and a kit II comprising an additional antibody or pharmaceutical composition for treating cancer.
33. A method for treating a cancer in a subject in need thereof, comprising administrating the binding protein according to claim 20 to the subject.
34. The method of claim 33, wherein the cancer is breast cancer, ovarian cancer, endometrial cancer, renal cancer, melanoma, lung cancer, gastric cancer, liver cancer, esophageal cancer, cervical cancer, head and neck tumor, cholangiocarcinoma, gallbladder cancer, bladder cancer, sarcoma, colorectal cancer, lymphoma or multiple myeloma.
35. A method for treating cancer in a subject in need thereof, comprising administering the combination of kits according to claim 32 to the subject.
36. A CD3 antibody, wherein the CD3 antibody comprises a light chain variable region and a heavy chain variable region; the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 30, 68 and 128, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 221, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 84 and 141, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 178, 197 and 222, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 177, 191 and 223, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 86 and 141, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 179, 198 and 224, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 31, 85 and 142, respectively; or, the light chain variable region VL comprises LCDR1, LCDR2 and LCDR3 with amino acid sequences as set forth in SEQ ID NOs: 172, 192 and 216, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 20, 68 and 128, respectively; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 291; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 263; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 294; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 258; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 295; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 259; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 296; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 260; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 297; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 259; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 291; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 245; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 291; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 257; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 291; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 281; or, the light chain variable region VL comprises the amino acid sequences as set forth in SEQ ID NOs: 291; the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 244; or, the CD3 antibody comprises two polypeptide chains, wherein, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 313; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 325; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 328; or, a first polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 357; and a second polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 346; or, the CD3 antibody comprises one polypeptide chain, wherein, the polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 489, an amino acid sequence as set forth in SEQ ID NO: 490, an amino acid sequence as set forth in SEQ ID NO: 491, an amino acid sequence as set forth in SEQ ID NO: 492, or, an amino acid sequence as set forth in SEQ ID NO: 493.
37. A BCMA antibody, wherein the BCMA antibody comprises a heavy chain variable region; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 78 and 136, respectively; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 15, 75 and 133, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 24, 76 and 134, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 25, 77 and 135, respectively; or, the BCMA antibody comprises a heavy chain variable region; the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 26, 90 and 136, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 78 and 147, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 147, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 36, 90 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 147, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 78 and 148, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 136, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 136, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 76 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 34, 76 and 146, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 148, respectively; or, the heavy chain variable region VH comprises HCDR1, HCDR2 and HCDR3 with amino acid sequences as set forth in SEQ ID NOs: 35, 90 and 136, respectively; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 251; or the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 248; or the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 249; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 250; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 265; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 266; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 267; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 268; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 269; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 270; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 271; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 272; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 273; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 274; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 275; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 276; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 277; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 278; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 279; or, the heavy chain variable region VH comprises the amino acid sequences as set forth in SEQ ID NOs: 280; or, the BCMA antibody comprises one polypeptide chain, wherein, the polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 319, an amino acid sequence as set forth in SEQ ID NO: 316, an amino acid sequence as set forth in SEQ ID NO: 317, or an amino acid sequence as set forth in SEQ ID NO: 318; or, the BCMA antibody comprises one polypeptide chain, wherein, the polypeptide chain comprises an amino acid sequence as set forth in SEQ ID NO: 330, or, an amino acid sequence as set forth in SEQ ID NO: 331, or, an amino acid sequence as set forth in SEQ ID NO: 332, or, an amino acid sequence as set forth in SEQ ID NO: 333, or, an amino acid sequence as set forth in SEQ ID NO: 334, or, an amino acid sequence as set forth in SEQ ID NO: 335, or, an amino acid sequence as set forth in SEQ ID NO: 336, or, an amino acid sequence as set forth in SEQ ID NO: 337, or, an amino acid sequence as set forth in SEQ ID NO: 338, or, an amino acid sequence as set forth in SEQ ID NO: 339, or, an amino acid sequence as set forth in SEQ ID NO: 340, or, an amino acid sequence as set forth in SEQ ID NO: 341, or, an amino acid sequence as set forth in SEQ ID NO: 342, or, an amino acid sequence as set forth in SEQ ID NO: 343, or, an amino acid sequence as set forth in SEQ ID NO: 344, or, an amino acid sequence as set forth in SEQ ID NO: 345.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
[0333] The embodiments of the present invention are described below with reference to specific examples, and other advantages and effects of the present invention will be readily apparent to those skilled in the art from the disclosure of the present specification.
[0334] In the present application, the term “antibody” or “H2L2” generally refers to a conventional four-chain antibody. Antibodies of most species exhibit a “Y”-type tetrameric structure comprising two identical heavy chains (H chains) and two identical light chains (L chains), which are also referred to as “H2L2”. The heavy chain comprises a heavy chain variable region (VH) near the N-terminus and a heavy chain constant region (CH) near the C-terminus; and the light chain comprises a light chain variable region (VL) near the N-terminus and a light chain constant region (CL) near the C-terminus. The heavy chain constant region of IgG antibody has 3 domains, namely CH1, CH2 and CH3; and has a hinge region between CH1 and CH2. According to the types κ and λ of the light chains, the light chain variable regions are further divided into Vκ and Vλ, and the corresponding light chain constant regions are Cκ and Cλ, respectively. The variable region of the antibody is the primary site where it recognizes and binds to the antigen; and the variable domains VH and VL and the constant domains CH1 and CL of the antibody together constitute the antigen-binding fragment (Fab). The CH2 and CH3 constitute the fragment crystallizable (Fc), which is the main region that exerts the effector functions of the antibody such as complement-dependent cytotoxicity (CDC) and antibody-dependent cell-mediated cytotoxicity (ADCC) effects, and affects the serum half-life of the antibody.
[0335] In the present application, the term “heavy-chain antibody” or “HCAb” generally refers to a class of antibodies that contain only a heavy chain dimer. A heavy-chain antibody (HCAb) lacking light chains is naturally present in the sera of Camelidae species and sharks. The heavy-chain antibody derived from Camelidae species has no CH1 region between the heavy chain variable region and the hinge region thereof, and contains only one heavy chain variable region (VHH) and two heavy chain constant domains (CH2 and CH3), in addition to the lack of light chains, as compared to the conventional H2L2 antibodies; and the basic structure thereof is a heavy chain dimer. The VHH fragment of the heavy-chain antibody of Camelidae species has different characteristics from the VH of the conventional antibodies, and the VHH structure cloned and expressed separately has structural stability and antigen-binding activity that are comparable to the original heavy-chain antibody, but has a molecular weight of only about 13 kDa, and is therefore also referred to as a nanobody or a single-domain antibody.
[0336] In the present application, the term “binding protein” or “antigen-binding protein” generally refers to a protein comprising an antigen-binding moiety, and optionally a scaffold or framework moiety that allows the antigen-binding moiety to adopt a conformation that facilitates the binding of the antigen-binding protein to the antigen. An antibody may typically comprise an antibody light chain variable region (VL) or an antibody heavy chain variable region (VH), or both. The VH and VL regions can be further divided into hypervariable regions termed complementarity determining regions (CDRs), which are scattered over more conserved regions termed framework regions (FRs). Each VH and VL can consist of three CDR regions and four FR regions arranged from amino-terminus to carboxyl-terminus in the following order: FR-1, CDR1, FR-2, CDR2, FR-3, CDR3 and FR-4. The variable regions of the heavy and light chains comprise binding domains that interact with antigens. The three CDRs of VH are denoted as HCDR1, HCDR2 and HCDR3, respectively, and may also be denoted as VH CDR1, VH CDR2 and VH CDR3, respectively; and the three CDRs of VL are denoted as LCDR1, LCDR2 and LCDR3, respectively, and may also be denoted as VL CDR1, VL CDR2 and VL CDR3, respectively. Examples of the antigen-binding proteins include, but are not limited to, antibodies, antigen-binding fragments (Fab, Fab′, F(ab).sub.2, Fv fragment, F(ab′).sub.2, scFv, di-scFv and/or dAb), immunoconjugates, multispecific antibodies (e.g., bispecific antibodies), antibody fragments, antibody derivatives, antibody analogs or fusion proteins, as long as they exhibit the desired antigen-binding activity.
[0337] In the present application, the amino acid sequences of the CDRs are shown according to the Chothia scheme. However, it is well known to those skilled in the art that the CDRs of an antibody can be defined in the art using a variety of methods, such as the Kabat scheme based on sequence variability (see Kabat et al., Sequences of Proteins of Immunological Interest, Fifth Edition, National Institutes of Health (U.S.), Bethesda, Maryland (1991)), and the Chothia scheme based on the location of the structural loop regions (see J Mol Biol 273: 927-48, 1997). In the technical solution of the present invention, the Combined scheme comprising the Kabat scheme and the Chothia scheme can also be used to determine the amino acid residues in a variable domain sequence. The Combined scheme combines the Kabat scheme with the Chothia scheme to obtain a larger range. See the table below for details. It will be understood by those skilled in the art that unless otherwise specified, the terms “CDR” and “complementary determining region” of a given antibody or a region (e.g., variable region) thereof are construed as encompassing complementary determining regions as defined by any one of the above known schemes described herein. Although the scope claimed in the present invention is the sequences shown based on the Chothia scheme, the amino acid sequences corresponding to the other schemes for numbering CDRs shall also fall within the scope of the present invention.
TABLE-US-00001 TABLE I The schemes for numbering the CDRs of the antibody of the present invention Kabat Chothia Combined LCDR1 L24--L34 L24--L34 L24-L34 LCDR2 L50--L56 L50--L56 L50-L56 LCDR3 L89--L97 L89--L97 L89-L97 HCDR1 H31--H35 H26--H32 H26-H35 HCDR2 H50--H65 H52--H56 H50-H65 HCDR3 H95--H102 H95--H102 H95-H102
[0338] Laa-Lbb can refer to an amino acid sequence from position aa (the Chothia scheme) to position bb (the Chothia scheme) beginning at the N-terminus of the light chain of the antibody; and Haa-Hbb can refer to an amino acid sequence from position aa (the Chothia scheme) to position bb (the Chothia scheme) beginning at the N-terminus of the heavy chain of the antibody. For example, L24-L34 can refer to the amino acid sequence from position 24 to position 34 according to the Chothia scheme beginning at the N-terminus of the light chain of the antibody; H26-H32 can refer to the amino acid sequence from position 26 to position 32 according to the Chothia scheme beginning at the N-terminus of the heavy chain of the antibody. It should be known to those skilled in the art that there are positions where insertion sites are present in numbering CDRs with the Chothia scheme (see http://bioinf.org.uk/abs/).
[0339] In the present application, the term “monoclonal antibody” generally refers to an antibody obtained from a population of substantially homogeneous antibodies, that is, the individual antibodies in the population are identical except for a small amount of natural mutations that may exist. Monoclonal antibodies are generally highly specific for a single antigenic site. Moreover, unlike conventional polyclonal antibody preparations (which generally have different antibodies directed against different determinants), each monoclonal antibody is directed against a single determinant on the antigen. In addition to their specificity, monoclonal antibodies have the advantage that they can be synthesized by hybridoma culture without contamination by other immunoglobulins. The modifier “monoclonal” indicates the characteristic of the antibody obtained from a population of substantially homogeneous antibodies, and is not to be construed as requiring production of the antibody by any particular method. For example, monoclonal antibodies used according to the present invention can be prepared in hybridoma cells or can be prepared by the recombinant DNA method.
[0340] In this application, the term “fully human antibody” generally refers to an antibody that is expressed by a genetically engineered antibody gene-deleted animal into which the entire gene that encodes an antibody in human is transferred. All parts of the antibody (including the variable and constant regions of the antibody) are encoded by genes of human origin. The fully human antibody can greatly reduce the immune side effects caused in the human body by the heterologous antibody. Methods for obtaining fully human antibodies in the art can include phage display, transgenic mice, and the like.
[0341] In the present application, the term “fully human heavy-chain antibody” generally refers to a heavy-chain antibody having a human antibody variable region VH obtained using Harbour HCAb transgenic mice (Patent Application WO2007/096779). The endogenous antibody heavy chain locus and light chain locus of the transgenic mice are knocked out or inactivated, making it impossible to produce mouse antibodies; then, the human antibody heavy chain gene fragments (V, D, J fragments) are transferred into the mice, and antibodies with human antibody gene sequences are generated by the rearrangement and mutation mechanism of the mice, the variable regions of which are human VHs. The human VH and the human heavy chain constant region Fc are fused and recombined to obtain the fully human heavy-chain antibody.
[0342] In the present application, the term “specifically bind to” generally refers to that an antibody binds to an epitope via its antigen-binding domain, and that the binding requires some complementarity between the antigen-binding domain and the epitope. According to this definition, an antibody is said to “specifically bind to” an antigen when the antibody more easily binds to an epitope via its antigen-binding domain than binds to a random, unrelated epitope. “Epitope” refers to a specific atomic group (e.g., saccharide side chain, phosphoryl, sulfonyl) or an amino acid on an antigen that binds to an antigen-binding protein (e.g., an antibody).
[0343] In the present application, the term “Fab” generally refers to the portion of a conventional antibody (e.g., IgG) that binds to an antigen, including the heavy chain variable region VH, the light chain variable region VL, the heavy chain constant region domain CH1 and the light chain constant region CL of the antibody. In conventional antibodies, the C-terminus of VH is linked to the N-terminus of CH1 to form a heavy chain Fd fragment, the C-terminus of VL is linked to the N-terminus of CL to form a light chain, and the C-terminus of CH1 is further linked to the hinge region and other constant region domains of the heavy chain to form a heavy chain. In some embodiments, “Fab” also refers to a variant structure of the Fab. For example, in certain embodiments, the C-terminus of VH is linked to the N-terminus of CL to form one polypeptide chain, and the C-terminus of VL is linked to the N-terminus of CH1 to form another polypeptide chain, in which case an Fab (cross VH/VL) structure is formed; in certain embodiments, CH1 of the Fab is not linked to the hinge region, but rather the C-terminus of CL is linked to the hinge region of the heavy chain, in which case an Fab (cross Fd/LC) structure is formed.
[0344] In the present application, the term “VH” generally refers to the heavy chain variable region VH domain of an antibody, i.e., the heavy chain variable region VH of a conventional antibody (H2L2 structure) from human or other animals, the heavy chain variable region VHH of a heavy-chain antibody (HCAb structure) from animals such as those of Camelidae species, or the heavy chain variable region VH of a fully human heavy-chain antibody (HCAb structure) produced using a Harbour HCAb transgenic mouse.
[0345] In the present application, the term “binding domain” generally refers to any protein functional region that can specifically bind to the antigen, either “Fab” or “VH”, or other antigen-binding forms (e.g., derived protein structures such as lipocalins, neuronal cell adhesion molecules (NCAMs), fibronectins, designed ankyrin repeat proteins (DARPins) and the like).
[0346] In the present application, the term “binding valence” generally refers to the number of “binding domains” in a binding protein, and also refers to the maximum number of antigen molecules or epitopes to which the binding protein can bind. For example, a conventional IgG antibody has a binding valence of two because it is capable of binding to two identical antigen molecules simultaneously; whereas a Fab antibody has a binding valence of one.
[0347] In the present application, the term “bispecific binding protein” generally refers to a binding protein having two antigen-binding specificities. The two antigen-binding specificities may refer to binding to two different antigens or to two different epitopes on the same antigen. Bispecific binding proteins may typically include bispecific antibodies, derivatives thereof and the like.
[0348] In the present application, the term “multispecific binding protein” generally refers to a binding protein having two or more antigen-binding specificities. Multispecific binding proteins may typically include multispecific antibodies, derivatives thereof and the like.
[0349] In the present application, the term “MFI” (mean fluorescence intensity) generally refers to the fluorescence intensity signal and its mathematical mean value analyzed in flow cytometry FACS, which can generally be obtained by processing and analyzing data generated by flow cytometer with specialized software such as FlowJo (FlowJo, LLC).
[0350] In the present application, the term “PD-L1” generally refers to the programmed death ligand 1 protein, a functional variant thereof and/or a functional fragment thereof. PD-L1 is also known as cluster of differentiation 274 (CD274) or B7 homologue 1 (B7-H1) and is a protein encoded by the CD274 gene (in human). The sequence of PD-L1 is known in the art. For example, the amino acid sequence of an exemplary full-length human PD-L1 protein can be found under NCBI accession No. NP_054862 or UniProt accession No. Q9NZQ7; and the sequence of an exemplary full-length cynomolgus monkey PD-L1 protein can be found under NCBI accession No. XP_005581836 or Uniprot accession No. G7PSE7.
[0351] In the present application, the term “PD-1” generally refers to the programmed death 1 receptor (also known as CD279), a functional variant thereof and/or a functional fragment thereof. The sequence of PD-1 is known in the art. For example, the sequence of an exemplary full-length human PD-1 protein can be found under NCBI accession No. NP_005009; and the sequence of an exemplary full-length cynomolgus monkey PD-1 protein can be found under NCBI accession No. NP_001271065 or Uniprot accession No. B0LAJ3.
[0352] In the present application, the term “CD80” generally refers to the cluster of differentiation 80 (also known as B7-1), a functional variant thereof and/or a functional fragment thereof. The sequence of CD80 is known in the art. For example, the sequence of an exemplary full-length human CD80 can be found under Uniprot accession No. P33681.
[0353] In the present application, the term “CTLA4” generally refers to the cytotoxic T lymphocyte-associated antigen-4 (also known as CD152), a functional variant thereof and/or a functional fragment thereof. The sequence of CTLA4 is known in the art. For example, the sequence of an exemplary full-length human CTLA4 can be found under Uniprot accession No. P16410; and the sequence of an exemplary full-length cynomolgus monkey CTLA4 can be found under Uniprot accession No. G7PL88.
[0354] In the present application, the term “HER2” generally refers to the receptor tyrosine kinase erbB-2 (also known as ERBB2), a functional variant thereof and/or a functional fragment thereof. The sequence of HER2 is known in the art. For example, the sequence of an exemplary full-length human HER2 can be found under Uniprot accession No. P04626; and the sequence of an exemplary full-length cynomolgus monkey HER2 can be found under NCBI accession No. XP_005584091.
[0355] In the present application, the term “B7H4” generally refers to the V-Set domain-containing T-cell activation inhibitor 1 (also known as VTCN1), a functional variant thereof and/or a functional fragment thereof. The sequence of B7H4 is known in the art. For example, the sequence of an exemplary full-length human B7H4 can be found under Uniprot accession No. Q7Z7D3; the sequence of an exemplary full-length cynomolgus monkey B7H4 can be found under NCBI accession No. XP_005542249; and the sequence of an exemplary full-length mouse B7H4 can be found under Uniprot accession No. Q7TSP5.
[0356] In the present application, the term “4-1BB” generally refers to the tumor necrosis factor receptor superfamily member 9 (also known as CD137, 4-1BBL receptor), a functional variant thereof and/or a functional fragment thereof. The sequence of 4-1BB is known in the art. For example, the sequence of an exemplary full-length human 4-1BB can be found under Uniprot accession No. Q07011; and the sequence of an exemplary full-length cynomolgus monkey 4-1BB can be found under NCBI accession No. XP_005544945.
[0357] In the present application, the term “BCMA” generally refers to the tumor necrosis factor receptor superfamily member 17 (also known as CD269, B cell maturation protein), a functional variant thereof and/or a functional fragment thereof. The sequence of BCMA is known in the art. For example, the sequence of an exemplary full-length human BCMA can be found under Uniprot accession No. Q02223; and the sequence of an exemplary full-length cynomolgus monkey BCMA can be found under NCBI accession No. XP_005591343.
[0358] In the present application, the term “BAFF” generally refers to the tumor necrosis factor ligand superfamily member 13B (also known as CD257, B cell activating factor), a functional variant thereof and/or a functional fragment thereof. The sequence of BAFF is known in the art. For example, the sequence of an exemplary full-length human BAFF can be found under Uniprot accession No. Q9Y275.
[0359] In the present application, the term “APRIL” generally refers to the tumor necrosis factor ligand superfamily member 13 (also known as CD256, proliferation-inducing ligand), a functional variant thereof and/or a functional fragment thereof. The sequence of APRIL is known in the art. For example, the sequence of an exemplary full-length human APRIL can be found under Uniprot accession No. 075888.
[0360] In the present application, the term “CD3” generally refers to the TCR/CD3 receptor protein complex on T cells. The specificity of the T cell response is mediated by the recognition of pMHC by the molecular complex of TCR and CD3. TCR is a heterodimer formed by two different transmembrane polypeptide chains, and the peptide chains comprise four types: α, β, γ and δ. According to the different combinations of the peptide chains, TCR is divided into TCRαβ and TCRγδ. CD3 has different transmembrane polypeptide chains, i.e., γ, δ, ε and ζ, which interact to form homodimers or heterodimers as part of the TCR-CD3 complex. Since the cytoplasmic region of the TCR peptide chain is very short, it is believed that the activation signal generated by the recognition of antigen by TCR is transduced into T cells by the CD3 peptide chain.
[0361] In the present application, the term “CD3E” generally refers to the c peptide chain of “CD3”. The sequence of CD3E is known in the art. For example, the sequence of an exemplary full-length human CD3E can be found under Uniprot accession No. P07766; and the sequence of an exemplary full-length cynomolgus monkey CD3E can be found under Uniprot accession No. Q95115.
EXAMPLES
[0362] The present invention is further illustrated by the following examples, which are not intended to limit the present invention. The examples do not include detailed descriptions of conventional methods, such as those methods for constructing vectors and plasmids, methods for inserting genes encoding proteins into such vectors and plasmids, or methods for introducing plasmids into host cells. Such methods are well known to those of ordinary skill in the art and are described in numerous publications. Experimental procedures without specified conditions in the following examples are performed in accordance with conventional procedures and conditions, or in accordance with instructions.
Example 1. Structural Design of Multispecific Binding Proteins Based on HCAb
[0363] In this example, the structures of several Fc-containing, symmetric or asymmetric, multivalent and multispecific binding proteins constructed using fully human heavy-chain antibodies (HCAbs) and single-domain antibodies (sdAbs) derived therefrom were listed. In some structures, the domains are linked via linker peptides. In some structures, amino acid mutations were introduced into the Fc region of the heavy chain to alter its binding to Fc receptors, thereby altering the associated effector functions or other properties. In some structures, different amino acid mutations were introduced into the Fc regions of the two heavy chains to reduce the homodimerization of heavy chains.
[0364] The molecular structures of the multispecific binding proteins included in the present application are listed in Table 1-1 and
TABLE-US-00002 TABLE 1-1 Molecular structures of multispecific binding proteins based on HCAb listed in the present application Number of different Structure Binding polypeptide No. Structure mode Structure type valence Symmetry chains 1 Fab(CL)-VH-Fc Fab-HCAb Tetravalent Symmetric 2 2 Fab(CH1)-VH-Fc Fab-HCAb Tetravalent Symmetric 2 3 VH-IgG_HC IgG-VH Tetravalent Symmetric 2 4 VH-IgG_LC IgG-VH Tetravalent Symmetric 2 5 IgG_HC-VH IgG-VH Tetravalent Symmetric 2 6 IgG_LC-VH IgG-VH Tetravalent Symmetric 2 7 IgG_HC-VH-VH IgG-VH(2) Hexavalent Symmetric 2 8 IgG_HC-VH′-VH″ IgG-VH(2) Hexavalent Symmetric 2 9 2 × VH-IgG(HC + LC) 2 × VH-IgG Hexavalent Symmetric 2 10 (VH′ + VH″)-IgG(HC + LC) 2 × VH-IgG Hexavalent Symmetric 2 11 Fab-Fc-VH Fab-Fc-VH Bivalent Asymmetric 3 12 Fab(cross VH/VL)-Fc-VH Fab-Fc-VH Bivalent Asymmetric 3 13 Fab(cross Fd/LC)-Fc-VH Fab-Fc-VH Bivalent Asymmetric 3 14 Fab-Fc-VH-VH Fab-Fc-VH(2) Trivalent Asymmetric 3 15 Fab-Fc-VH′-VH″ Fab-Fc-VH(2) Trivalent Asymmetric 3 16 Fab(cross VH/VL)-Fc-VH-VH Fab-Fc-VH(2) Trivalent Asymmetric 3 17 Fab(cross VH/VL)-Fc-VH′-VH″ Fab-Fc-VH(2) Trivalent Asymmetric 3 18 Fab(cross Fd/LC)-Fc-VH-VH Fab-Fc-VH(2) Trivalent Asymmetric 3 19 Fab(cross Fd/LC)-Fc-VH′-VH″ Fab-Fc-VH(2) Trivalent Asymmetric 3 20 scFv(VL − VH)-Fc-VH scFv-Fc-VH Bivalent Asymmetric 2 21 scFv(VH − VL)-Fc-VH scFv-Fc-VH Bivalent Asymmetric 2 22 scFv(VL − VH)-Fc-VH-VH scFv-Fc-VH(2) Trivalent Asymmetric 2 23 scFv(VH − VL)-Fc-VH-VH scFv-Fc-VH(2) Trivalent Asymmetric 2 24 scFv(VL − VH)-Fc-VH′-VH″ scFv-Fc-VH(2) Trivalent Asymmetric 2 25 scFv(VH − VL)-Fc-VH′-VH″ scFv-Fc-VH(2) Trivalent Asymmetric 2 26 Fab-Fc-VH-VH-VH Fab-Fc-VH(3) Tetravalent Asymmetric 3 27 Fab-Fc-VH′-VH″-VH′″ Fab-Fc-VH(3) Tetravalent Asymmetric 3
TABLE-US-00003 TABLE 1-2 Sequences of linker peptides Name of linker peptide Length Sequence of linker peptide SEQ ID NO GS_2 2 GS None GS_4 4 GSGS 495 GS_5 5 GGGGS 496 GS_6 6 GGSGGS 497 GS_7 7 GGGGSGS 498 GS_15 15 GGGGSGGGGSGGGGS 499 GS_20 20 GGGGSGGGGSGGGGSGGGGS 500 GS_25 25 GGGGSGGGGSGGGGSGGGGSGGGGS 501 H1_15 15 EPKSSDKTHTPPPPP 502 UH1 6 EPKSSD 503 LH1 10 DKTHTCPPCP 504 G5-LH 15 GGGGGDKTHTCPPCP 505 H1_15-RT 17 EPKSSDKTHTPPPPPRT 506 AS-GS_15 17 ASGGGGSGGGGSGGGGS 507 L-GS_15-RT 18 LGGGGSGGGGSGGGGSRT 508 L-H1_15-RT 18 LEPKSSDKTHTPPPPPRT 509 KL-H1_15-RT 19 KLEPKSSDKTHTPPPPPRT 510 KL-H1_15-AS 19 KLEPKSSDKTHTPPPPPAS 511 RT-GS_5-KL 9 RTGGGGSKL 512 RT-GS_15-KL 19 RTGGGGSGGGGSGGGGSKL 513 RT-GS_25-KL 29 RTGGGGSGGGGSGGGGSGGGGSGGGGSKL 514 Human IgG1 hinge 15 EPKSCDKTHTCPPCP 515 Human IgG1 hinge 15 EPKSSDKTHTCPPCP 516 (C220S) Human IgG2 hinge 12 ERKCCVECPPCP 517 Human IgG4 hinge 12 ESKYGPPCPSCP 518 Human IgG4 hinge 12 ESKYGPPCPPCP 519 (S228P)
Example 1.1. Fab-HCAb Symmetric Structure
[0365] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0366] As shown in
Example 1.1.1. Structure (1): Fab(CL)-VH-Fc
[0367] The binding protein of structure (1) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VH_A-CH1 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VL_A-CL-L1-VH_B-L2-CH2-CH3 from the amino-terminus to the carboxyl-terminus. In structure (1), VL_A of the antibody A and VH_B of the heavy-chain antibody B are fused on the same polypeptide chain, so that the mismatched byproducts generated by the association of VL_A and VH_B can be avoided.
[0368] VH_B of the polypeptide chain 2 is linked to CH2 via a linker peptide L2; L2 may be a hinge region or a hinge region-derived linker peptide sequence of IgG or the sequence listed in Table 1-2, preferably the sequence of human IgG1 hinge region, human IgG1 hinge (C220S) or G5-LH.
[0369] In one embodiment, CL of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L1 is 0 in length. In another embodiment, CL of the polypeptide chain 2 is linked to VH_B via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
Example 1.1.2. Structure (2): Fab(CH1)-VH-Fc
[0370] The binding protein of structure (2) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-L1-VH_B-L2-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0371] VH_B of the polypeptide chain 2 is linked to CH2 via a linker peptide L2; L2 may be a hinge region or a hinge region-derived linker peptide sequence of IgG or the sequence listed in Table 1-2, preferably the sequence of human IgG1 hinge region, human IgG1 hinge (C220S) or G5-LH.
[0372] In one embodiment, CH1 of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L1 is 0 in length. In another embodiment, CH1 of the polypeptide chain 2 is linked to VH_B via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
Example 1.2. IgG-VH Tetravalent Symmetric Structure
[0373] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0374] As shown in
Example 1.2.1. Structure (3): VH-IgG_HC
[0375] The binding protein of structure (3) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_B-L-VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0376] In one embodiment, VH_B of the polypeptide chain 2 is fusion-linked directly to VH_A, i.e., L is 0 in length. In another embodiment, VH_B of the polypeptide chain 2 is linked to VH_A via a linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.2.2. Structure (4): VH-IgG_LC
[0377] The binding protein of structure (4) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VH_B-L-VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0378] In one embodiment, VH_B of the polypeptide chain 1 is fusion-linked directly to VL_A, i.e., L is 0 in length. In another embodiment, VH_B of the polypeptide chain 1 is linked to VL_A via linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.2.3. Structure (5): IgG_HC-VH
[0379] The binding protein of structure (5) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-h-CH2-CH3-L-VH_B from the amino-terminus to the carboxyl-terminus.
[0380] In one embodiment, CH3 of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L is 0 in length. In another embodiment, CH3 of the polypeptide chain 2 is linked to VH_B via a linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.2.4. Structure (6): IgG_LC-VH
[0381] The binding protein of structure (6) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL-L-VH_B from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0382] In one embodiment, CL of the polypeptide chain 1 is fusion-linked directly to VH_B, i.e., L is 0 in length. In another embodiment, CL of the polypeptide chain 1 is linked to VH_B via a linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.3. IgG-VH(2) Hexavalent Symmetric Structure
[0383] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0384] The present invention further provides a method for constructing a trispecific binding protein using three parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, and a heavy-chain antibody C binding to a third antigen.
[0385] As shown in
Example 1.3.1. Structure (7): IgG_HC-VH-VH
[0386] Structure (7) represents a bispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-h-CH2-CH3-L1-VH_B-L2-VH_B from the amino-terminus to the carboxyl-terminus.
[0387] In one embodiment, CH3 of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L1 is 0 in length. In another embodiment, CH3 of the polypeptide chain 2 is linked to VH_B via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0388] In one embodiment, a first VH_B of the polypeptide chain 2 is fusion-linked directly to a second VH_B, i.e., L2 is 0 in length. In another embodiment, a first VH_B of the polypeptide chain 2 is linked to a second VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.3.2. Structure (8): IgG_HC-VH′-VH″
[0389] Structure (8) represents a trispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_A-CH1-h-CH2-CH3-L1-VH_B-L2-VH_C from the amino-terminus to the carboxyl-terminus.
[0390] In one embodiment, CH3 of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L1 is 0 in length. In another embodiment, CH3 of the polypeptide chain 2 is linked to VH_B via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0391] In one embodiment, VH_B of the polypeptide chain 2 is fusion-linked directly to VH_C, i.e., L2 is 0 in length. In another embodiment, VH_B of the polypeptide chain 2 is linked to VH_C via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.4. 2×VH-IgG Hexavalent Symmetric Structure
[0392] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0393] The present invention further provides a method for constructing a trispecific binding protein using three parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, and a heavy-chain antibody C binding to a third antigen.
[0394] As shown in
Example 1.4.1. Structure (9): 2×VH-IgG(HC+LC)
[0395] Structure (9) represents a bispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VH_B-L1-VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_B-L2-VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0396] In one embodiment, VH_B of the polypeptide chain 1 is fusion-linked directly to VL_A, i.e., L1 is 0 in length. In another embodiment, VH_B of the polypeptide chain 1 is linked to VL_A via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0397] In one embodiment, VH_B of the polypeptide chain 2 is fusion-linked directly to VH_A, i.e., L2 is 0 in length. In another embodiment, VH_B of the polypeptide chain 2 is linked to VH_A via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
[0398] In one embodiment, L1 and L2 may be identical sequences. In another embodiment, L1 and L2 may be different sequences.
Example 1.4.2. Structure (10): (VH′+VH″)-IgG(HC+LC)
[0399] Structure (10) represents a trispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, also known as a short chain, comprising VH_B-L1-VL_A-CL from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, also known as a long chain, comprising VH_C-L2-VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0400] In one embodiment, VH_B of the polypeptide chain 1 is fusion-linked directly to VL_A, i.e., L1 is 0 in length. In another embodiment, VH_B of the polypeptide chain 1 is linked to VL_A via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0401] In one embodiment, VH_C of the polypeptide chain 2 is fusion-linked directly to VH_A, i.e., L2 is 0 in length. In another embodiment, VH_C of the polypeptide chain 2 is linked to VH_A via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
[0402] In one embodiment, L1 and L2 may be identical sequences. In another embodiment, L1 and L2 may be different sequences.
Example 1.5. Fab-Fc-VH Bivalent Asymmetric Structure
[0403] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0404] As shown in
[0405] In one embodiment, h in the polypeptide chain containing VH_B may be a hinge region or a hinge region-derived linker peptide sequence of IgG, such as the sequence of human IgG1 hinge (C220S) or G5-LH in Table 1-2.
Example 1.5.1. Structure (11): Fab-Fc-VH
[0406] The binding protein of structure (11) comprises three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3, comprising VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
Example 1.5.2. Structure (12): Fab(Cross VH/VL)-Fc-VH
[0407] The binding protein of structure (12) comprises three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3, comprising VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
Example 1.5.3. Structure (13): Fab(Cross Fd/LC)-Fc-VH
[0408] The binding protein of structure (13) comprises three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CH1 from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CL-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0409] In one embodiment, h in the polypeptide chain 2 is a hinge region or a linker peptide, the sequence of which may be the sequence of LH1 in Table 1-2.
Example 1.6. Fab-Fc-VH(2) Trivalent Asymmetric Structure
[0410] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0411] The present invention further provides a method for constructing a trispecific binding protein using three parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, and a heavy-chain antibody C binding to a third antigen.
[0412] As shown in
[0413] In one embodiment, h in the polypeptide chain containing VH_B may be a hinge region or a hinge region-derived linker peptide sequence of IgG, such as the sequence of human IgG1 hinge (C220S) or G5-LH in Table 1-2.
Example 1.6.1. Structure (14): Fab-Fc-VH-VH
[0414] Structure (14) represents a bispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_B-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0415] In one embodiment, the first VH_B of the polypeptide chain 3 is fusion-linked directly to the second VH_B, i.e., L is 0 in length. In another embodiment, the first VH_B of the polypeptide chain 3 is linked to the second VH_B via a linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.6.2. Structure (15): Fab-Fc-VH′-VH″
[0416] Structure (15) represents a trispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_C-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0417] In one embodiment, VH_C of the polypeptide chain 3 is fusion-linked directly to VH_B, i.e., L is 0 in length. In another embodiment, VH_C of the polypeptide chain 3 is linked to VH_B via linker peptide L; L may be the sequence listed in Table 1-2.
Example 1.6.3. Structure (16): Fab(Cross VH/VL)-Fc-VH-VH
[0418] Structure (16) represents a bispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_B-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0419] In one embodiment, the first VH_B of the polypeptide chain 3 is fusion-linked directly to the second VH_B, i.e., L is 0 in length. In another embodiment, the first VH_B of the polypeptide chain 3 is linked to the second VH_B via a linker peptide L; and L may be the sequence listed in Table 1-2.
Example 1.6.4. Structure (17): Fab(Cross VH/VL)-Fc-VH′-VH″
[0420] Structure (17) represents a trispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_C-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0421] In one embodiment, VH_C of the polypeptide chain 3 is fusion-linked directly to VH_B, i.e., L is 0 in length. In another embodiment, VH_C of the polypeptide chain 3 is linked to VH_B via linker peptide L; L may be the sequence listed in Table 1-2.
Example 1.6.5. Structure (18): Fab(Cross Fd/LC)-Fc-VH-VH
[0422] Structure (18) represents a bispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CH1 from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CL-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_B-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0423] In one embodiment, the first VH_B of the polypeptide chain 3 is fusion-linked directly to the second VH_B, i.e., L is 0 in length. In another embodiment, the first VH_B of the polypeptide chain 3 is linked to the second VH_B via a linker peptide L; and L may be the sequence listed in Table 1-2.
[0424] In one embodiment, h in the polypeptide chain 2 is a hinge region or a linker peptide, the sequence of which may be the sequence of LH1 in Table 1-2.
Example 1.6.6. Structure (19): Fab(Cross Fd/LC)-Fc-VH′-VH″
[0425] Structure (19) represents a trispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-CH1 from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VL_A-CL-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_C-L-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0426] In one embodiment, VH_C of the polypeptide chain 3 is fusion-linked directly to VH_B, i.e., L is 0 in length. In another embodiment, VH_C of the polypeptide chain 3 is linked to VH_B via linker peptide L; L may be the sequence listed in Table 1-2.
[0427] In one embodiment, h in the polypeptide chain 2 is a hinge region or a linker peptide, the sequence of which may be the sequence of LH1 in Table 1-2.
Example 1.7. scFv-Fc-VH Bivalent Asymmetric Structure
[0428] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0429] As shown in
[0430] In one embodiment, the sequence of the scFv may be VH-linker peptide-VL. In another embodiment, the sequence of the scFv may be VL-linker peptide-VH.
[0431] In one embodiment, L in the polypeptide chain is a linker peptide, and may be the sequence listed in Table 1-2, preferably the sequence of GS_15 or GS_20.
[0432] In one embodiment, h in the polypeptide chain is a hinge region or derived sequence of an IgG antibody, and may be the sequence listed in Table 1-2, preferably the sequence of human IgG1 hinge (C220S) or G5-LH.
Example 1.7.1. Structure (20): scFv(VL-VH)-Fc-VH
[0433] The binding protein of structure (20) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-L-VH_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, comprising VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
Example 1.7.2. Structure (21): scFv(VH-VL)-Fc-VH
[0434] The binding protein of structure (21) comprises two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-L-VL_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, comprising VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
Example 1.8. scFv-Fc-VH(2) Trivalent Asymmetric Structure
[0435] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0436] The present invention further provides a method for constructing a trispecific binding protein using three parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, and a heavy-chain antibody C binding to a third antigen.
[0437] As shown in
[0438] In one embodiment, the sequence of the scFv may be VH-linker peptide-VL. In another embodiment, the sequence of the scFv may be VL-linker peptide-VH.
[0439] In one embodiment, L1 in the polypeptide chain is a linker peptide linking VH and VL in the scFv, and may be the sequence listed in Table 1-2, preferably the sequence of GS_15 or GS_20.
[0440] In one embodiment, L2 in the polypeptide chain is a linker peptide linking the heavy chain variable regions of the two heavy-chain antibodies, and may be the sequence listed in Table 1-2. In another embodiment, the heavy chain variable regions of the two heavy-chain antibodies are directly fused, i.e., L2 is 0 in length.
[0441] In one embodiment, h in the polypeptide chain is a hinge region or derived sequence of an IgG antibody, and may be the sequence listed in Table 1-2, preferably the sequence of human IgG1 hinge (C220S) or G5-LH.
Example 1.8.1. Structure (22): scFv(VL-VH)-Fc-VH-VH
[0442] Structure (22) represents a bispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-L1-VH_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, comprising VH_B-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0443] In one embodiment, a first VH_B of the polypeptide chain 2 is fusion-linked directly to a second VH_B, i.e., L2 is 0 in length. In another embodiment, a first VH_B of the polypeptide chain 2 is linked to a second VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.8.2. Structure (23): scFv(VH-VL)-Fc-VH-VH
[0444] Structure (23) represents a bispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-L1-VL_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, comprising VH_B-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0445] In one embodiment, a first VH_B of the polypeptide chain 2 is fusion-linked directly to a second VH_B, i.e., L2 is 0 in length. In another embodiment, a first VH_B of the polypeptide chain 2 is linked to a second VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.8.3. Structure (24): scFv(VL-VH)-Fc-VH′-VH″
[0446] Structure (24) represents a trispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-L1-VH_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 2 or a second polypeptide chain, comprising VH_C-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0447] In one embodiment, VH_C of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L2 is 0 in length. In another embodiment, VH_C of the polypeptide chain 2 is linked to VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.8.4. Structure (25): scFv(VH-VL)-Fc-VH′-VH″
[0448] Structure (25) represents a trispecific binding protein comprising two different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VH_A-L1-VL_A-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_C-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0449] In one embodiment, VH_C of the polypeptide chain 2 is fusion-linked directly to VH_B, i.e., L2 is 0 in length. In another embodiment, VH_C of the polypeptide chain 2 is linked to VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.9. Fab-Fc-VH(3) Tetravalent Asymmetric Structure
[0450] The present invention provides a method for constructing a bispecific binding protein using two parent monoclonal antibodies: a conventional antibody A binding to a first antigen and a heavy-chain antibody B binding to a second antigen.
[0451] The present invention further provides a method for constructing a trispecific binding protein using three parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, and a heavy-chain antibody C binding to a third antigen.
[0452] The present invention further provides a method for constructing a tetraspecific binding protein using four parent monoclonal antibodies: a conventional antibody A binding to a first antigen, a heavy-chain antibody B binding to a second antigen, a heavy-chain antibody C binding to a third antigen, and a heavy-chain antibody D binding to a fourth antigen.
[0453] As shown in
[0454] In one embodiment, h in the polypeptide chain containing VH_B may be a hinge region or a hinge region-derived linker peptide sequence of IgG, such as the sequence of human IgG1 hinge (C220S) or G5-LH in Table 1-2.
Example 1.9.1. Structure (26): Fab-Fc-VH-VH-VH
[0455] Structure (26) represents a bispecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_B-L1-VH_B-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0456] In one embodiment, the first VH_B of the polypeptide chain 3 is fusion-linked directly to the second VH_B, i.e., L1 is 0 in length. In another embodiment, a first VH_B of the polypeptide chain 3 is linked to a second VH_B via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0457] In one embodiment, a second VH_B of the polypeptide chain 3 is fusion-linked directly to a third VH_B, i.e., L2 is 0 in length. In another embodiment, a second VH_B of the polypeptide chain 3 is linked to a third VH_B via a linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 1.9.2. Structure (27): Fab-Fc-VH′-VH″-VH′″
[0458] Structure (27) represents a tetraspecific binding protein comprising three different polypeptide chains: a polypeptide chain 1 or a first polypeptide chain, comprising VL_A-CL from the amino-terminus to the carboxyl-terminus; a polypeptide chain 2 or a second polypeptide chain, comprising VH_A-CH1-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus; and a polypeptide chain 3 or a third polypeptide chain, comprising VH_D-L1-VH_C-L2-VH_B-h-CH2-CH3 from the amino-terminus to the carboxyl-terminus.
[0459] In one embodiment, VH_D of the polypeptide chain 3 is fusion-linked directly to VH_C, i.e., L1 is 0 in length. In another embodiment, VH_D of the polypeptide chain 3 is linked to VH_C via a linker peptide L1; and L1 may be the sequence listed in Table 1-2.
[0460] In one embodiment, VH_C of the polypeptide chain 3 is fusion-linked directly to VH_B, i.e., L2 is 0 in length. In another embodiment, VH_C of the polypeptide chain 3 is linked to VH_B via linker peptide L2; and L2 may be the sequence listed in Table 1-2.
Example 2. Sequence Analysis, Expression and Purification, and Characterization and Analysis of Physicochemical Properties of Antibodies
Example 2.1. Sequence Analysis and Optimization of Antibodies
[0461] The sequences of the heavy chain variable domain of the antibody are derived from events such as gene rearrangements of germline gene V, D and J segments of heavy chain gene clusters and somatic hypermutations on chromosomes; the sequences of the light chain variable domain are derived from the events such as gene rearrangements of germline gene V, D and J segments of light chain gene clusters and somatic hypermutations. Gene rearrangement and somatic hypermutation are major factors in increasing antibody diversity. Antibodies derived from the same germline V gene segment may also produce different sequences, but with relatively high similarity overall. The germline gene segments that are likely to undergo gene rearrangement can be deduced from the antibody variable domain sequences using algorithms such as IMGT/DomainGapAlign (http://imgt.org/3Dstructure-DB/cgi/DomainGapAlign.cgi) or NCBI/IgBLAST (https://www.ncbi.nlm.nih.gov/igblast/).
[0462] Chemical modifications, sometimes introduced after amino acid chains of a protein or polypeptide is translated and synthesized in a cell, are called post-translational modifications (PTMs). For antibodies, some PTM sites are very conservative. For example, the conservative amino acid asparagine (Asn) at position 297 (EU numbering) of the constant domain of the human IgG1 antibody is often glycosylated to form a saccharide chain whose structure is critical for antibody structure and associated effector functions. However, PTMs may have a greater effect on antigen binding or result in changes in the physicochemical properties of the antibody, if they are present in the variable domains, particularly in the antigen binding regions (e.g., CDRs) of an antibody. For example, glycosylation, deamidation, isomerization, oxidation, and the like may increase the instability or heterogeneity of antibody molecules, thereby increasing the difficulty and risk of antibody development. Thus, it is very important for the development of therapeutic antibodies to avoid some potential PTMs. As experience has accumulated, it has been found that some PTMs are highly correlated with the composition of amino acid sequences, especially the “pattern” of the composition of adjacent amino acids, which makes it possible to predict potential PTMs from the primary amino acid sequences of a protein. For example, it can be predicted that there is an N-linked glycosylation site from the N-x-S/T sequence pattern (asparagine at the first position, any amino acid other than non-proline at the second position, and serine or threonine at the third position). The amino acid sequence patterns leading to PTMs may be derived from germline gene sequences, e.g., the human germline gene fragment IGHV3-33 naturally having a glycosylation pattern NST in the FR3 region; or they may also be derived from somatic hypermutations. For example, NGS or NLT may be a glycosylation site, NS may be a deamidation site, and DG may cause isomerization of aspartic acid.
[0463] The amino acid sequence patterns of PTMs may be disrupted by amino acid mutations, thereby reducing or eliminating the formation of specific PTMs. There are different methods for designing mutations depending on the antibody sequences and PTM sequence patterns. One method is to replace a “hot spot” amino acid (e.g., N or S in the NS pattern) with an amino acid with similar physicochemical properties (e.g., to mutate N into Q). If the PTM sequence pattern is derived from somatic hypermutations and is not present in the germline gene sequence, the other method can be to replace the sequence pattern with the corresponding germline gene sequence. In practice, a variety of methods for designing mutations may be used for the same PTM sequence pattern.
Example 2.2. Expression and Purification of Antibodies
[0464] In this example, a general method for preparing antibodies in mammalian host cells (e.g., human embryonic kidney cell HEK293 or Chinese hamster ovary CHO cells and derived cells thereof) by such techniques as transient transfection and expression, and affinity capture and separation is described. This method is applicable to an antibody of interest comprising an Fc region. The antibody of interest may consist of one or more protein polypeptide chains, and may be derived from one or more expression plasmids.
[0465] The amino acid sequences of the polypeptide chains of the antibody were converted into nucleotide sequences by codon optimization. The encoding nucleotide sequences were synthesized and cloned into expression vectors compatible with the host cell. The mammalian host cells were transfected simultaneously with plasmids encoding the polypeptide chains of the antibody in a particular ratio, and the recombinant antibody with correct folding and assembly of polypeptide chains could be obtained by the conventional recombinant protein expression and purification techniques. Specifically, FreeStyle™ 293-F cells (Thermo, #R79007) were expanded in FreeStyle™ F17 Expression Medium (Thermo, #A1383504). Before transient transfection, the cells were adjusted to a concentration of 6-8×10.sup.5 cells/mL, and cultured in a shaker at 37° C. with 8% CO.sub.2 for 24 h to make a concentration of 1.2×10.sup.6 cells/mL. 30 mL of cultured cells were taken. Plasmids encoding the polypeptide chains of the antibody were mixed in a certain ratio, and a total of 30 μg of the plasmids (the ratio of the plasmids to cells was 1 μg:1 mL) were dissolved in 1.5 mL of Opti-MEM reduced serum medium (Thermo, #31985088). The resulting mixture was filtered through a 0.22 μm filter membrane for sterilization. Then, 1.5 mL of Opti-MEM was dissolved in 120 μL of 1 mg/mL PEI (Polysciences, #23966-2), and the mixture was left to stand for 5 min PEI was slowly added to the plasmids, and the mixture was incubated at room temperature for 10 min. The mixed solution of plasmids and PEI was slowly added dropwise while shaking the culture flask, and the cells were cultured in a shaker at 37° C. with 8% CO.sub.2 for 5 days. Cell viability was measured after 5 days. The culture was collected and centrifuged at 3300 g for 10 min, and then the supernatant was collected and centrifuged at high speed to remove impurities. A gravity column (Bio-Rad, #7311550) containing MabSelect™ (GE Healthcare, #71-5020-91) was equilibrated with a PBS buffer (pH 7.4) and rinsed with 2-5 column volumes of PBS. The column was loaded with the supernatant sample, and rinsed with 5-10 column volumes of PBS buffer, followed by 0.1 M glycine at pH 3.5 to elute the target protein. The eluate was adjusted to neutrality with Tris-HCl at pH 8.0, and concentrated and buffer exchanged into PBS buffer or a buffer with other components with an ultrafiltration tube (Millipore, #UFC901024) to obtain a purified solution of the recombinant antibody. Finally, the purified antibody solution was determined for concentration using NanoDrop (Thermo, NanoDrop™ One), subpackaged and stored for later use.
Example 2.3. Analysis of Protein Purity and Polymers by SEC-HPLC
[0466] In this example, analytical size-exclusion chromatography (SEC) was used to analyze the protein sample for purity and polymer form. An analytical chromatography column TSKgel G3000SW×1 (Tosoh Bioscience, #08541, 5 μm, 7.8 mm×30 cm) was connected to a high-pressure liquid chromatograph HPLC (Agilent Technologies, Agilent 1260 Infinity II) and equilibrated with a PBS buffer at room temperature for at least 1 h. A proper amount of the protein sample (at least 10 μg) was filtered through a 0.22 μm filter membrane and then injected into the system, and an HPLC program was set: the sample was passed through the chromatography column with a PBS buffer at a flow rate of 1.0 mL/min for a maximum of 25 min. An analysis report was generated by the HPLC, with the retention time of the components with different molecular sizes in the sample reported.
[0467]
Example 2.4. Determination of Thermostability of Protein Molecules by DSF
[0468] Differential scanning fluorimetry (DSF) is a commonly used high-throughput method for determining the thermostability of proteins. In this method, changes in the fluorescence intensity of the dye that binds to unfolded protein molecules were monitored using a real-time quantitative fluorescence PCR instrument to reflect the denaturation process of the protein and thus to reflect the thermostability of the protein. In this example, the thermal denaturation temperature (Tm) of a protein molecule was measured by DSF. 10 μg of protein was added to a 96-well PCR plate (Thermo, #AB-0700/W), followed by the addition of 2 μL of 100× diluted dye SYPRO™ (Invitrogen, #2008138), and then the mixture in each well was brought to a final volume of 40 μL by adding buffer. The PCR plate was sealed, placed in a real-time quantitative fluorescence PCR instrument (Bio-Rad CFX96 PCR System), and incubated at 25° C. for 5 min, then at a temperature gradually increased from 25° C. to 95° C. at a gradient of 0.2° C./0.2 min, and at a temperature decreased to 25° C. at the end of the test. The FRET scanning mode was used and data analysis was performed using Bio-Rad CFX Maestro software to calculate the Tm of the sample.
Example 2.5. Determination of Molecular Stability and Molecular Aggregation of Proteins by Uncle
[0469] Uncle (Unchained Labs) is a multifunctional one-stop protein stability analysis platform that characterizes protein stability by total fluorescence, static light scattering (SLS) and dynamic light scattering (DLS) assay methods. The parameters of melting temperature (Tm), aggregation temperature (Tagg) and particle size (diameter) can be obtained simultaneously for the same group of samples. In this example, a “Tm & Tagg with optional DLS” application of Uncle was selected for the determination. 9 μL of sample was added to a Uni tube, and the temperature was set to gradually increase from 25° C. to 95° C. at a gradient of 0.3° C./min. Four acquisitions of data were performed at the beginning and end of DLS assay, each for 5 s. After the experimental run was finished, the Tm value of each sample was calculated according to a barycentric mean (BCM) formula using the Uncle analysis software, the Tagg value was calculated from a curve (aggregation curve) of fluorescence intensity of SLS at the wavelength of 266 nm or 473 nm, and the particle size and dispersion of the samples were calculated from DLS related functions.
Example 3. PD-L1×CTLA4 Bispecific Antibodies
Example 3.1. Background
[0470] Programmed death receptor 1 (PD-1) is mainly expressed in immune cells such as T cells. It has two ligands, i.e., programmed death ligand 1 (PD-L1) and PD-L2. PD-L1 is mainly expressed in antigen-presenting cells and a variety of tumor cells. The interaction between PD-L1 and PD-1 can down-regulate the activity of T cells, reduce the secretion of cytokines and play a role in immunosuppression. The expression of the PD-L1 protein can be detected in many human tumor tissues. The microenvironment at the tumor site can induce the expression of PD-L1 on tumor cells, and the expressed PD-L1 facilitates the occurrence and growth of tumors, induces the apoptosis of anti-tumor T cells and further protects the tumor cells from immune attack. The PD-1/PD-L1 pathway inhibitor can block the binding of PD-1 to PD-L1, block negative regulation signals, restore the activity of T cells, and play a role in killing tumor cells, thereby inhibiting tumor growth. Therefore, the immunoregulation targeting PD-1/PD-L1 is of great significance for tumor growth inhibition.
[0471] Cytotoxic T lymphocyte-associated antigen 4 (CTLA4) is a negative regulator expressed on T cells. After binding to CD80 or CD86 on antigen presenting cells, the CTLA4 blocks the co-stimulatory signal of CD28 and simultaneously down-regulates the activity of T cells, thereby playing a role in immunosuppression. CTLA4-mediated inhibition mechanisms are often responsible for the escape of tumor cells from the immune system. By blocking the interaction between CTLA4 and its ligand, the activity of T cells can be restored, and the anti-tumor ability can be enhanced.
[0472] At present, blocking antibodies against PD-1, PD-L1 and CTLA4 all show excellent anti-tumor effects in the clinic, and a plurality of antibody drugs are approved for marketing. Nevertheless, those drugs and treatments still face many clinical challenges, such as low response rates. Therefore, many clinical trials based on the combination regimens of blocking antibodies such as PD-1, PD-L1 and CTLA4 are actively underway. Since the CTLA4 inhibitor shows significant toxic and side effects, in the existing combination regimens of the PD-1/PD-L1 inhibitor and the CTLA4 inhibitor, the CTLA4 inhibitor is usually selected at a lower dose. For example, in a clinical trial of a combination of the anti-PD-1 antibody nivolumab and the anti-CTLA-4 antibody ipilimumab in the treatment of colorectal cancer and renal cell carcinoma, nivolumab and ipilimumab are at doses of 3 mg/kg and 1 mg/kg, respectively. In a clinical trial of a combination of the anti-PD-L1 antibody durvalumab, and the anti-CTLA-4 antibody tremelimumab in the treatment of non-small cell lung cancer, durvalumab and tremelimumab are at doses of 10-20 mg/kg and 1 mg/kg, respectively.
[0473] In another aspect, there is a growing understanding of the biological mechanisms related to tumor immunity. It has been found that blocking the CTLA4 signaling pathway will lead to high expression of PD-1 on tumor infiltrating lymphocytes (TILs), and blocking the PD-1 signaling pathway will up-regulate the expression of CTLA4 on TILs (Rev Assoc Med Bras 2017; 63(9): 814-823). This suggests that there may be a drug resistance mechanism induced by blocking a single co-inhibitory signaling pathway, whereas by combining those antibodies to block multiple co-inhibitory signaling pathways simultaneously, there may be a synergistic effect on T cell activation. Moreover, the latest study reported a new mechanism of interaction between PD-1 and CTLA4 signaling pathways, illustrating a synergistic effect of PD-L1 and CTLA4 antibodies (Zhao et al, 2019, Immunity 51, 1059-1073).
[0474] Based on the existing knowledge, we believe that bispecific antibodies targeting both PD-L1 and CTLA4 can improve anti-tumor efficacy and safety by one or more mechanisms of action. Firstly, the PD-L1×CTLA4 bispecific antibody activates T cells at different stages by blocking the CTLA4 signaling pathway and PD-1/PD-L1 signaling pathway; the cis interaction of PD-L1 and CD80 allows for a better synergy with CTLA4. Secondly, PD-L1 is highly expressed in tumor tissues, and the PD-L1×CTLA4 bispecific antibody can specifically remove CTLA4 inhibition signals in a tumor microenvironment to activate T cells and reduce toxic and side effects caused by non-specific activation of CTLA4 monoclonal antibodies in a peripheral system. Thirdly, the PD-L1×CTLA4 bispecific antibody can selectively retain Fc effector function (e.g., ADCC), thereby specifically killing inhibitory T cells highly expressing CTLA4 such as Treg cells by CTLA4 or specifically killing tumor cells highly expressing PD-L1 by PD-L1 in a tumor microenvironment. In addition, the bispecific antibody, as a drug product, is more advantageous in terms of economy and convenience of administration than the combination of two drug products.
Example 3.2. Acquisition of Anti-PD-L1 IgG Antibodies and Anti-CTLA4 HCAb Antibodies
Example 3.2.1. Acquisition of Fully Human Anti-PD-L1 IgG Antibodies
[0475] The Harbour H2L2 mouse (Harbour Antibodies BV) is a transgenic mouse carrying an immune repertoire of human immunoglobulins that produces antibodies with intact human antibody variable domains and rat constant domains.
[0476] Harbour H2L2 mice were subjected to multiple rounds of immunization with a soluble recombinant human PD-L1 protein (NovoProtein, #CM06). When the titer of the PD-L1-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken and fused with a myeloma cell line to obtain hybridoma cells. After multiple rounds of screening and cloning of the hybridoma cells, several monoclonal antibody molecules specifically recognizing PD-L1 were identified. Those monoclonal antibodies were further identified, and several candidate antibody molecules were preferentially selected according to parameters such as the binding ability to human PD-L1, the binding ability to cynomolgus monkey PD-L1, and the ability to inhibit the binding of PD-L1 to PD-1. The candidate antibody molecules were then subjected to sequence analysis and optimization to obtain several variant sequences. The VL and VH sequences of the antibody were fused to the corresponding human κ light chain constant region and IgG1 heavy chain constant region sequences and expressed to obtain recombinant fully human antibody molecules. The recombinant fully human anti-PD-L1 IgG antibodies are listed in Table 3-9.
Example 3.2.2. Acquisition of Fully Human Anti-CTLA4 HCAb Antibodies
[0477] The Harbour HCAb mouse (Harbour Antibodies BV, WO2010/109165A2) is a transgenic mouse carrying an immune repertoire of human immunoglobulins, capable of producing heavy chain-only antibodies that are only half the size of conventional IgG antibodies. The antibodies produced have only human antibody heavy chain variable domains and mouse Fc constant domains.
[0478] Harbour HCAb mice were subjected to multiple rounds of immunization with a soluble recombinant human CTLA4 protein (ACRO Biosystems, #CT4-H5229). When the titer of the CTLA4-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken, from which B cells were isolated, and the CD138-positive plasma cells were sorted using a mouse plasma cell isolation kit (Miltenyi, #130-092-530). The human VH gene was amplified from plasma cells using conventional molecular biology techniques, and the amplified human VH gene fragments were constructed into mammalian cell expression plasmid pCAG vectors encoding the sequence of the heavy chain Fc region of the human IgG1 antibody. Mammal host cells (e.g., human embryonic kidney cell HEK293) were transfected with the plasmids and allowed to express antibodies to obtain a supernatant with fully human HCAb antibodies. Positive HCAb antibodies were identified by testing the supernatant with HCAb antibodies for binding to recombinant human CTLA4 proteins by ELISA. Those HCAb antibodies were further identified, and several candidate HCAb antibody molecules were preferentially selected according to parameters such as the binding ability to human CTLA4, the binding ability to cynomolgus monkey CTLA4, and ability to inhibit the binding of CTLA4 to B7-1. The candidate HCAb antibody molecules were then subjected to sequence analysis and optimization to obtain several variant sequences. The VH sequence of the HCAb antibody and the Fc sequence of the heavy chain of human IgG1 were fused and expressed to obtain fully human recombinant HCAb antibody molecules. The recombinant fully human anti-CTLA4 HCAb antibodies are listed in Table 3-9.
Example 3.3. Construction of Bispecific Antibody Molecules Using Anti-PD-L1 IgG Antibodies and Anti-CTLA4 HCAb Antibodies
[0479] In this example, PD-L1×CTLA4 bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-PD-L1 IgG antibody PR000070 or PR000265 and the antigen-binding domain VH of the anti-CTLA4 HCAb antibody PR000184.
[0480] In this and subsequent examples, the anti-PD-L1 IgG monoclonal antibody PR000070, PR000416 or PR000265 was used as an anti-PD-L1 positive control molecule, and was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×CTLA4 bispecific antibody molecule. PR000070, PR000265 and PR000416 are all derived from the same anti-PD-L1 monoclonal antibody. PR000070 and PR000265 are both human IgG1 subtypes and both have an N297A mutation in their Fc regions, the only difference between which was that PR000265 had one amino acid mutation in the heavy chain variable region VH. PR000265 and PR000416 are both human IgG1 subtypes and have identical Fab structures, the only difference between which was that PR000265 had an N297A mutation in the Fc region.
[0481] In this and subsequent examples, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as an anti-CTLA4 positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule.
Example 3.3.1. Construction of Molecules of Fab-HCAb Symmetric Structures
[0482] PD-L1×CTLA4 bispecific antibody molecules of Fab-HCAb symmetric structures were designed according to the structures described in Example 1.1 using anti-PD-L1 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 3-1. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 3-2.
TABLE-US-00004 TABLE 3-1 PD-L1×CTLA4 bispecific antibody molecules of Fab-HCAb symmetric structures Second linker First linker peptide Bispecific PD-L1 CTLA4 peptide (between Structure antibody Antibody Antibody (between Fab VH_B and Fc type No. molecules (Fab) (VH_B) and VH_B) CH2) (mutation) 1 PR000403 PR000265 PR000184 None Human IgG1 Human IgG1 hinge (L234A, L235A, and P329G) 1 PR000404 PR000265 PR000184 None Human IgG1 Human IgG1 hinge
TABLE-US-00005 TABLE 3-2 Expression of PD-L1 × CTLA4 bispecific antibody molecule proteins of Fab-HCAb symmetric structures Plasmid Bispecific transfection ratio Yield (mg/L) Structure antibody Expression system (short chain:long after first SEC-HPLC No. molecules and volume chain) purification purity (%) 1 PR000403 HEK293-F (30 ml) 3:2 32.00 97.57 1 PR000404 HEK293-F (30 ml) 3:2 19.67 97.02
Example 3.3.2. Construction of Molecules of IgG-VH Tetravalent Symmetric Structure
[0483] PD-L1×CTLA4 bispecific antibody molecules of IgG-VH tetravalent symmetric structures were designed according to the structures described in Example 1.2 using anti-PD-L1 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 3-3. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 3-4.
TABLE-US-00006 TABLE 3-3 PD-L1×CTLA4 bispecific antibody molecules of IgG-VH tetravalent symmetric structures Bispecific PD-L1 CTLA4 VH B Structure antibody Antibody Antibody position Linker Fc type No. molecules (IgG) (VH_B) relative to IgG peptide (mutation) 3 PR000300 PR000070 PR000184 N-terminus of KL-H1_15-RT Human IgG1 heavy chain 4 PR000301 PR000070 PR000184 N-terminus of KL-H1_15-RT Human IgG1 light chain 6 PR000302 PR000070 PR000184 C-terminus of H1 15 Human IgG1 light chain 5 PR000303 PR000070 PR000184 C-terminus of L-H1_15-RT Human IgG1 heavy chain 5 PR000401 PR000265 PR000184 C-terminus of L-H1_15-RT Human IgG1 heavy chain (L234A, L235A, P329G) 5 PR000402 PR000265 PR000184 C-terminus of L-GS_15-RT Human IgG1 heavy chain (L234A, L235A, P329G) 3 PR001573 PR000265 PR000184 N-terminus of KL-H1_15-RT Human IgG1 heavy chain 3 PR001576 PR000265 PR000184 N-terminus of KL-H1_15-RT Human IgG1 heavy chain (S239D, I332E) 4 PR001574 PR000265 PR000184 N-terminus of KL-H1_15-RT Human IgG1 light chain 4 PR001577 PR000265 PR000184 N-terminus of KL-H1_15-RT Human IgG1 light chain (S239D, I332E)
TABLE-US-00007 TABLE 3-4 Expression of PD-L1 × CTLA4 bispecific antibody molecule proteins of IgG-VH tetravalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 3 PR000300 HEK293-F (30 ml) 27.33 100.0 4 PR000301 HEK293-F (30 ml) 20.64 100.0 6 PR000302 HEK293-F (30 ml) 29.11 100.0 5 PR000303 HEK293-F (30 ml) 42.57 100.0 5 PR000401 HEK293-F (30 ml) 2.67 96.77 5 PR000402 HEK293-F (30 ml) 5.33 96.41 3 PR001573 HEK293-F (50 ml) 20.00 100.0 3 PR001576 HEK293-F (50 ml) 0.4 n.d. 4 PR001574 HEK293-F (30 ml) 20.00 100.0 4 PR001577 HEK293-F (30 ml) 26.00 100.0
Example 3.3.3. Construction of Molecules of 2×VH-IgG Hexavalent Symmetric Structures
[0484] PD-L1×CTLA4 bispecific antibody molecules of 2×VH-IgG hexavalent symmetric structures were designed according to the structures described in Example 1.4 using anti-PD-L1 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 3-5. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 3-6.
TABLE-US-00008 TABLE 3-5 PD-L1×CTLA4 bispecific antibody molecules of 2×VH-IgG hexavalent symmetric structures First linker Second linker peptide peptide Bispecific PD-L1 CTLA4 (between (between Structure antibody Antibody Antibody VH_B and VH_B and Fc type No. molecules (IgG) (VH_B) VL_A) VHL_A) (mutation) 9 PR001572 PR000070 PR000184 KL-H1_15-RT KL-H1_15-RT Human IgG1 9 PR001575 PR000265 PR000184 KL-H1_15-RT KL-H1_15-RT Human IgG1 9 PR001578 PR000265 PR000184 KL-H1_15-RT KL-H1_15-RT Human IgG1 (S239D, I332E)
TABLE-US-00009 TABLE 3-6 Expression of PD-L1 × CTLA4 bispecific antibody molecule proteins of 2 × VH-IgG hexavalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 9 PR001572 HEK293-F (30 ml) 3.7 n.d. 9 PR001575 HEK293-F (30 ml) 5 100 9 PR001578 HEK293-F (30 ml) 4.3 100
Example 3.3.4. Construction of Molecules of Fab-Fc-VH Bivalent Asymmetric Structures
[0485] PD-L1×CTLA4 bispecific antibody molecules of Fab-Fc-VH bivalent asymmetric structures were designed according to the structures described in Example 1.4 using anti-PD-L1 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 3-7. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 3-8.
TABLE-US-00010 TABLE 3-7 PD-L1×CTLA4 bispecific antibody molecules of Fab-Fc-VHI bivalent asymmetric structures Bispecific PD-L1 CTLA4 Structure Fc type of Structure antibody Antibody Antibody of Fab Fc type of Fab VH_B end No. molecules (Fab) (VH_B) enc end (mutation) (mutation) 11 PR001609 PR000265 PR000184 Normal Human IgG1 Human IgG1 (knob) (hole) 11 PR001610 PR000265 PR000184 Normal Human IgG1 Human IgG1 (knob, DE) (hole, DE)
[0486] (mutation code: Knob: S354C, T366W; Hole: Y349C, T366S, L368A, Y407V; DE: S239D, I332E.)
TABLE-US-00011 TABLE 3-8 Expression of PD-L1 × CTLA4 bispecific antibody molecule proteins of Fab-Fc-VH bivalent asymmetric structures Bispecific Plasmid Yield (mg/L) Structure antibody Expression system transfection ratio after first SEC-HPLC No. molecules and volume (chain 1:2:3) purification purity (%) 11 PR001609 HEK293-F (30 ml) 1:1:1 40 98.27 11 PR001610 HEK293-F (30 ml) 1:1:1 12.33 95.68
Example 3.3.5. Sequences of PD-L1×CTLA4 Bispecific Antibody Molecules and Control Molecules
[0487] The sequence numbers corresponding to the sequences of the PD-L1×CTLA4 bispecific antibody molecules constructed in this example, the corresponding parent monoclonal antibody molecules such as the PD-L1 monoclonal antibody and the CTLA4 monoclonal antibody, and the control molecules are listed in Table 3-9, Table 3-10 and Table 3-11. The structure numbers in Table 3-11 correspond to those in Table 1-1 and
TABLE-US-00012 TABLE 3-9 Control molecules and parent monoclonal antibodies Antibody No. Antibody PR000070 Anti-PD-L1 91G3H5H3, hIgG1(N297A) PR000265 Anti-PD-L1 91G3H5H3(D54E), hIgG1(N297A) PR000416 Anti-PD-L1 91G3H5H3(D54E), hIgG1 PR000184 Anti-CTLA4 heavy-chain antibody CL5v3 PR000149 Anti-CTLA4 monoclonal antibody iplimumab analog, hIgG1 PR000151 Anti-PD-L1 monoclonal antibody atezolizumab analog, hIgG1(N297A)
TABLE-US-00013 TABLE 3-10 Sequence numbers of sequences and CDR sequences of control molecules and parent monoclonal antibodies Antibody Light Heavy No. chain chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 PR000070 347 300 282 233 167 188 211 15 62 122 PR000265 353 308 282 240 167 188 211 15 69 122 PR000416 353 310 282 240 167 188 211 15 69 122 PR000184 None 303 None 236 None None None 17 65 125 PR000149 348 301 283 234 168 189 212 15 63 123 PR000151 349 302 284 235 169 190 213 16 64 124
TABLE-US-00014 TABLE 3-11 Sequence numbers of PD-L1 × CTLA4 bispecific antibody molecules of this example Structure Antibody Polypeptide Polypeptide Polypeptide No. No. chain 1 chain 2 chain 3 3 PR000300 353 362 None 4 PR000301 363 364 None 6 PR000302 365 364 None 5 PR000303 353 366 None 5 PR000401 353 369 None 5 PR000402 353 370 None 1 PR000403 371 372 None 1 PR000404 371 373 None 9 PR001572 363 362 None 3 PR001573 353 394 None 4 PR001574 363 310 None 9 PR001575 363 394 None 3 PR001576 353 395 None 4 PR001577 363 396 None 9 PR001578 363 395 None 11 PR001609 353 407 390 11 PR001610 353 408 392
TABLE-US-00015 TABLE 3-12 Sequence numbers of CDRs of antigen-binding domains of PD-L1 × CTLA4 bispecific antibody molecules Structure Antibody Antigen-binding No. No. domain No. LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 1 PR000403, #1 167 188 211 15 69 122 PR000404 #2 None None None 17 65 125 3 PR000300 #1 167 188 211 15 62 122 #2 None None None 17 65 125 3 PR001573, #1 167 188 211 15 69 122 PR001576 #2 None None None 17 65 125 4 PR000301 #1 167 188 211 15 62 122 #2 None None None 17 65 125 4 PR001574, #1 167 188 211 15 69 122 PR001577 #2 None None None 17 65 125 5 PR000303 #1 167 188 211 15 62 122 #2 None None None 17 65 125 5 PR000401, #1 167 188 211 15 69 122 PR000402 #2 None None None 17 65 125 6 PR000302 #1 167 188 211 15 62 122 #2 None None None 17 65 125 9 PR001572 #1 167 188 211 15 62 122 #2 None None None 17 65 125 9 PR001575, #1 167 188 211 15 69 122 PR001578 #2 None None None 17 65 125 11 PR001609, #1 167 188 211 15 69 122 PR001610 #2 None None None 17 65 125
Example 3.4. Binding to CTLA4
[0488] This example is intended to investigate the binding activity of the PD-L1×CTLA4 bispecific antibody molecules to CTLA4.
Example 3.4.1. Binding to Human CTLA4 Extracellular Domain Recombinant Protein
[0489] The binding ability of the antibody molecules to human CTLA4 recombinant protein was determined by enzyme-linked immunosorbent assay (ELISA). Specifically, a 96-well plate was firstly coated with 2 μg/mL human CTLA4-His protein (ACRO Biosystems, #CT4-H5229) at 100 μL/well and incubated at 4° C. overnight. The plate was then rinsed 3 times with a PBST buffer (a PBS buffer containing 0.05% Tween-20), added with a blocking buffer (a PBS buffer containing 5% skim milk powder), and incubated at 37° C. for 1 h. The plate was then rinsed 3 times with a PBST buffer. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 30 nM were added at 100 μL/well. The mixture was mixed well and incubated at 37° C. for 1 h. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The plate was then rinsed 3 times with a PBST buffer. Then, the HRP-labeled goat anti-human IgG Fc secondary antibody (Sigma, #A0170, diluted in a 1:5000 ratio) was added at 100 μL/well, and the mixture was incubated at 37° C. for 0.5 h. The plate was then rinsed 3 times with a PBST buffer. Then, TMB chromogenic solution was added at 100 μL/well for reaction for 15 min. Finally, a stop buffer was added to stop the reaction. The absorbance value (OD value) was read at 450 nM using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.). The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0490] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule.
[0491] As shown in
TABLE-US-00016 TABLE 3-13 Binding to human CTLA4 protein Maximum Antibody EC.sub.50 (nM) OD450 PR000184 0.599 3.01 PR000300 0.567 2.95 PR000301 0.35 2.92 PR000302 10.6 3.55 PR000303 1.566 2.72
Example 3.4.2. Binding to CHO-K1 Cells CHO-K1/hCTLA4 Highly Expressing Human CTLA4 or HEK293 Cells HEK293/hCTLA4 Highly Expressing Human CTLA4
[0492] The binding ability of antibody molecules to cells such as a CHO-K1 cell line CHO-K1/hCTLA4 (KYinno, KC-1406) highly expressing human CTLA4 or an HEK293T cell line HEK293/hCTLA4 (KYinno, KC-0209) highly expressing human CTLA4 was determined by flow cytometry FACS. Specifically, CHO-K1/hCTLA4 and HEK293/hCTLA4 cells were digested and resuspended in an F12K medium and a DMEM medium, respectively, with the cell density adjusted to 1×10.sup.6 cells/mL. Thereafter, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 300 nM, or a total of 8 concentrations obtained by a 4-fold gradient dilution from the highest final concentration of 100 nM were added to the 96-well plate at 100 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Alexa Fluor 488 anti-human IgG Fc, Biolegend, #409322, diluted in a 1:1000 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0493] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule. The Ipilimumab analog was also used as a positive control molecule. The results are shown in
[0494] As shown in
[0495] As shown in
[0496] As shown in
[0497] As shown in
TABLE-US-00017 TABLE 3-14 Binding to CHO-K1/hCTLA4 EC.sub.50 Maximum EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR000184 1.688 1668 PR001573 9.905 780.8 PR001609 n.d. 355.4 PR000300 2.914 2621 PR001574 11.98 677.2 PR001610 n.d. 467.9 PR000301 1.935 2360 PR001577 8.516 584.9 PR000403 20.54 343.2 PR000302 26.15 1566 PR001572 2.911 433.7 PR000404 26.92 338.6 PR000303 4.362 2040 PR001575 5.075 415.3 PR000184 4.642 722 PR001578 4.646 401.3 Ipilimumab 3.412 420.3 Test 1 Test 2
TABLE-US-00018 TABLE 3-15 Binding to HEK293/hCTLA4 Maximum Antibody EC.sub.50 (nM) MFI PR000401 5.173 1911 PR000402 2.4 1764 PR000403 16.3 1408 PR000404 37.22 1615 PR000184 1.147 2261
Example 3.5. Blocking the Binding of CTLA4 to its Ligand
[0498] This example is intended to investigate the inhibitory activity of the PD-L1×CTLA4 bispecific antibody molecules for the binding of CTLA4 to its ligand B7-1/CD80.
Example 3.5.1. Blocking the Binding of Human CTLA4 Protein to its Ligand Protein
[0499] The inhibitory activity of the antibody molecules for the binding of human CTLA4 protein to its ligand B7-1/CD80 was determined by enzyme-linked immunosorbent assay (ELISA). Specifically, a 96-well plate was firstly coated with 2 μg/mL protein human B7-1-Fc (ACRO Biosystems, #B71-H5259) at 100 μL/well and placed at 4° C. overnight. The plate was then rinsed 3 times with a PBST buffer (a PBS buffer containing 0.05% Tween-20), added with a blocking buffer (a PBS buffer containing 5% skim milk powder), and incubated at 37° C. for 1 h. Then, the antibody molecules at a total of 7 concentrations obtained by a 4-fold gradient dilution with the highest final concentration of 180 nM were added at 90 μL/well. The mixture was mixed well and incubated at 37° C. for 20 min. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. Then, biotinylated human CTLA4-Fc protein (ACRO Biosystems, #CT4-H82F3) was added at 10 μL/well to make a final concentration of 0.25 μg/mL, and the mixture was incubated at 37° C. for 1 h. The plate was then rinsed 3 times with a PBST buffer. Then, a label Precision Protein™ StrepTactin-HRP conjugate (Bio-RAD, #1610380, diluted in a 1:4000 ratio) was added at 100 μL/well, and the mixture was incubated at 37° C. for 0.5 h. The plate was then rinsed 3 times with a PBST buffer. Then, TMB chromogenic solution was added at 100 μL/well for reaction for 15 min. Finally, a stop buffer was added to stop the reaction. The absorbance value (OD value) was read at 490 nM using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.). The data were processed and analyzed by plotting using GraphPad Prism 8 software to convert the OD value into the inhibition rate, and inhibition curves, IC.sub.50 values, the maximum inhibition rates and other parameters were obtained through a four-parameter nonlinear fitting.
[0500] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule. The results are shown in
[0501] As shown in
TABLE-US-00019 TABLE 3-16 Blocking the binding of human CTLA4 protein to B7-1 protein Maximum inhibition Antibody IC.sub.50 (nM) rate (%) PR000184 2.673 97.20 PR000300 2.091 98.17 PR000301 2.511 98.31 PR000302 11.57 98.91 PR000303 4.121 97.26
Example 3.5.2. Blocking the Binding of Human CTLA4 Cell to its Ligand Protein
[0502] The inhibitory activity of the antibody molecules for the binding of cells expressing CTLA4 to the ligand B7-1/CD80 of CTLA4 was determined by flow cytometry FACS. Specifically, a CHO-K1 cell line CHO-K1/hCTLA4 (KYinno, KC-1406) highly expressing human CTLA4 was digested and resuspended in an F12K medium, with the cell density adjusted to 1×10.sup.6 cells/mL. The cells were incubated in an FACS buffer (a PBS buffer containing 2% FBS) at 37° C. for 15 min. The FACS buffer was added to a 96-well plate at 200 μL/well for blocking. After incubation at 37° C. for 1 h, the blocking buffer in the wells was discarded. Thereafter, the CHO-K1/hCTLA4 cells were seeded in the 96-well plate at 200 μL/well (2×10.sup.5 cells/well) and centrifuged at 500 g at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 3-fold gradient dilution from the highest final concentration of 200 nM, or a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 400 nM were added to the 96-well plate at 100 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. Then, 1 μg/mL biotinylated ligand protein human B7-1-Fc (ACRO Biosystems, #B71-H82F2) was added to the 96-well plate at 100 μL/well, and the mixture was mixed well. The 96-well plate was incubated at 4° C. for 1.5 h away from light. Then, the cells in each well were rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent label (Streptavidin, Alexa Fluor™ 488 conjugate, Thermo, #S11223, diluted in a 1:500 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed three times with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software to convert the fluorescence signal (MFI) into the inhibition rate, and inhibition curves, IC.sub.50 values, the maximum inhibition rates and other parameters were obtained through four-parameter nonlinear fitting.
[0503] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule. The results are shown in
[0504] As shown in
[0505] As shown in
[0506] As shown in
TABLE-US-00020 TABLE 3-17 Blocking the binding of CHO-K1/hCTLA4 cell to B7-1 protein Maximum Maximum Maximum IC.sub.50 inhibition IC.sub.50 inhibition IC.sub.50 inhibition Antibody (nM) rate (%) Antibody (nM) rate (%) Antibody (nM) rate (%) PR000184 4.132 99.71 PR001573 6.222 99.2 PR001578 2.966 100 PR000300 6.417 100.8 PR001574 4.488 99.8 PR001609 98.33 95 PR000301 3.21 99.88 PR001577 4.883 99.7 PR001610 96.56 61.3 PR000302 71.23 48.98 PR001572 2.982 100 PR000184 3.009 100 PR000303 9.712 83.3 PR001575 3.795 100 Test 1 Test 2
Example 3.6. ADCC Effect Mediated by CTLA4
[0507] This example is intended to investigate the antibody-dependent cell-mediated cytotoxicity (ADCC) of PD-L1×CTLA4 bispecific antibody molecules to 293F-hCTLA4 cells (ChemPartner) highly expressing human CTLA4. In the first step, target cells were labeled with DELFIA BATDA (Perkin Elmer, #C136-100). The specific labeling method was as follows. 1×10.sup.6 target cells were labeled with 2 μL of DELFIA BATDA reagent; the cells were incubated in an incubator at 37° C. with CO.sub.2 for 20 min, washed 4 times with PBS, and centrifuged at 1000 rpm for 5 min; after the last wash, the precipitate was resuspended in a complete medium, with the cell density adjusted to 1×10.sup.5/mL. In the second step, the labeled target cells were seeded in a 96-well plate (Corning, #3599) at 100 μL/well. Then, the antibody molecules at a total of 7 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 0.8 nM were added at 50 μL/well. The mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 10 min. In the third step, the NK-92 MI/CD16a cells (ChemPartner) were collected as effector cells, and the cell density of NK-92 MI/CD16a was adjusted to 6×10.sup.5/mL. Then, the cells were added to the 96-well plate at 50 μL/well in an effect-to-target ratio of 3:1. Thereafter, the cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 2 h. In the fourth step, the cells were centrifuged at 500 g for 5 min, and then 25 μL of supernatant from each well was added to a new 96-well assay plate. Then, a DELFIA® Europium solution (Perkin Elmer, #C135-100) was added at 200 μL/well, and the plate was shaken at 250 rpm at room temperature for 15 min. Finally, fluorescence values were measured using an EnVision® 2015 multifunctional microplate reader (Perkin Elmer, Inc.).
[0508] The killing rate was calculated according to the following formula:
Kill rate (%)=(ER−ETSR)/(TMR−ETSR)×100%
[0509] wherein: [0510] ER=experimental well (antibody+ effector cell+target cell); ETSR=spontaneous release well for mixed effector cell and target cell (effector cell+target cell); TMR=maximum release well for target cell (target cell+lysis buffer)
[0511] The data were processed and analyzed by plotting using GraphPad Prism 8 software, and killing rate curves of the antibodies to target cells, EC.sub.50 values, maximum killing rates and other parameters were obtained through four-parameter nonlinear fitting.
[0512] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 (hIgG1 subtype) was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the PD-L1×CTLA4 bispecific antibody molecule. The anti-PD-L1 monoclonal antibody PR000416 (hIgG1 subtype) was used as a negative control molecule.
[0513] As shown in
TABLE-US-00021 TABLE 3-18 Killing target cells by ADCC effect Maximum killing Antibody EC.sub.50 (nM) rate (%) PR000300 0.008 23.81 PR000301 0.031 36.62 PR000184 0.015 30.20
Example 3.7. Binding to PD-L1
[0514] This example is intended to investigate the binding activity of the PD-L1×CTLA4 bispecific antibody molecules to PD-L1.
Example 3.7.1. Binding to Human PD-L1 Extracellular Domain Recombinant Protein
[0515] The binding ability of the antibody molecules to PD-L1 recombinant protein was determined by enzyme-linked immunosorbent assay (ELISA). Specifically, a 96-well plate (Corning, #9018) was firstly coated with 2 μg/mL human PD-L1-His protein (ACRO Biosystems, #PD1-H5229) at 100 μL/well and placed at 4° C. overnight. Then, the protein-coated plate was rinsed 3 times with a PBST buffer (a PBS buffer containing 0.05% Tween-20), added with a blocking buffer containing 2% BSA, and incubated at 37° C. for 1 h. The blocking buffer was discarded, and the plate was rinsed 3 times with a PBST buffer. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 30 nM were added at 100 μL/well. The mixture was mixed well and incubated at 37° C. for 1 h. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The plate was then rinsed 3 times with a PBST buffer. Then, the HRP-labeled goat anti-human IgG Fc secondary antibody (Sigma, #A0170, diluted in a 1:5000 ratio) was added at 100 μL/well, and the mixture was incubated at 37° C. for 0.5 h. The plate was then rinsed 3 times with a PBST buffer. Then, TMB chromogenic solution was added at 100 μL/well for reaction for 15 min. Finally, a stop buffer was added to stop the reaction. The absorbance value (OD value) was read at 450 nM using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.).
[0516] The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0517] In this example, the anti-PD-L1 monoclonal antibody PR000070 was used as a positive control molecule, and was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×CTLA4 bispecific antibody molecule.
[0518] As shown in
TABLE-US-00022 TABLE 3-19 Binding to human PDL1 protein Maximum Antibody EC.sub.50 (nM) OD450 PR000070 0.146 3.454 PR000300 0.108 3.519 PR000301 0.131 3.528 PR000302 0.152 3.542 PR000303 0.241 3.523
Example 3.7.2. Binding to CHO-K1 Cells CHO-K1/hPDL1 Highly Expressing Human PD-L1 or Tumor Cells MDA-MB-231 Highly Expressing Human PD-L1
[0519] The binding ability of the antibody molecules to a CHO-K1 cell line CHO-K1/hPDL1 (GenScript, M00543) highly expressing human PD-L1 or a tumor cell line MDA-MB-231 (ATCC, HTB-26) highly expressing human PD-L1 and other cells was determined by flow cytometry FACS. Specifically, the cells were digested and resuspended in a complete medium, with the cell density adjusted to 1×10.sup.6 cells/mL. Thereafter, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 60 nM, or a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 300 nM, or a total of 8 concentrations obtained by a 4-fold gradient dilution from the highest final concentration of 100 nM were added to the 96-well plate at 100 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Goat human IgG (H+L) Alexa Fluor 488 conjugation, Thermo, #A11013, 1:1000 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0520] In this example, the anti-PD-L1 monoclonal antibody PR000070 or PR000416 (or PR000265) was used as a positive control molecule, and was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×CTLA4 bispecific antibody molecule. The results are shown in
[0521] As shown in
[0522] As shown in
[0523] As shown in
[0524] As shown in
TABLE-US-00023 TABLE 3-20 Binding to CHO-K1/hPDL1 cells EC.sub.50 Maximum EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR000070 0.747 22681 PR001573 0.83 8308 PR001609 1.51 11168 PR000300 0.884 21029 PR001574 0.93 6712 PR001610 1.37 11146 PR000301 0.918 16556 PR001577 0.96 6609 PR000403 0.73 8094 PR000302 0.737 18580 PR001572 1.07 5828 PR000404 0.78 8102 PR000303 0.848 17992 PR001575 2.41 5879 PR000416 0.5 8379 PR001578 1.94 5658 Experiment 1 Experiment 2
TABLE-US-00024 TABLE 3-21 Binding to MDA-MB-231 cells Maximum Antibody EC.sub.50 (nM) MFI PR000401 0.288 994 PR000402 0.259 841 PR000265 0.163 958
Example 3.8. Blocking the Binding of PD-L1 to its Ligand
[0525] This example is intended to investigate the inhibitory activity of the PD-L1×CTLA4 bispecific antibody molecules for the binding of PD-L1 to its ligand PD-1.
Example 3.8.1. Blocking the Binding of Human PD-L1 Cell to its Ligand Protein
[0526] The inhibitory activity of the antibody molecules for the binding of cells expressing PD-L1 to the ligand PD-1 of PD-L1 was determined by flow cytometry FACS. Specifically, a CHO-K1 cell line CHO-K1/hPDL1 (GenScript, M00543) highly expressing human PD-L1 was digested and resuspended in an F12K medium, with the cell density adjusted to 2×10.sup.6 cells/mL. The cells were incubated in an FACS buffer (a PBS buffer containing 1% BSA) at 37° C. for 15 min. A blocking buffer was added to a 96-well plate at 200 μL/well. After incubation at 37° C. for 1 h, the blocking buffer in the wells was discarded. Thereafter, the CHO-K1/hPDL1 cells were seeded in the 96-well plate (1×10.sup.5 cells/well) at 50 μL/well. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 100 nM were added to the 96-well plate at 100 μL/well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 0.5 h away from light. Then, a PBS buffer was added at 100 μL/well, the mixture was centrifuged at 500 g at 4° C. for 5 min, and the supernatant was discarded. Then, 1 μg/mL biotinylated ligand protein human PD-1 protein (ACRO Biosystems, #PD1-H82F2) was added to the 96-well plate at 50 μL/well, and the mixture was mixed well. The 96-well plate was incubated at 4° C. for 0.5 h away from light. Then, the cells in each well were then rinsed twice with 100 μL of pre-cooled PBS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (PE Streptavidin, BD Biosciences, #554061, 1:200 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 0.5 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled PBS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software to convert the fluorescence signal (MFI) into the inhibition rate, and inhibition curves, IC.sub.50 values, the maximum inhibition rates and other parameters were obtained through four-parameter nonlinear fitting.
[0527] In this example, the anti-PD-L1 monoclonal antibody PR000070 or PR000416 (or PR000265) was used as a positive control molecule, and was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×CTLA4 bispecific antibody molecule. The results are shown in
[0528] As shown in
[0529] As shown in
[0530] As shown in
[0531] As shown in
TABLE-US-00025 TABLE 3-22 Blocking the binding of CHO-K1/hPDL1 to PD1 protein Maximum Maximum Maximum IC.sub.50 inhibition IC.sub.50 inhibition IC.sub.50 inhibition Antibody (nM) rate (%) Antibody (nM) rate (%) Antibody (nM) rate (%) PR000070 0.725 96.8 PR001573 0.5 82.3 PR001609 1.12 81.6 PR000300 0.677 96.61 PR001574 0.88 81.1 PR001610 1.23 80.2 PR000301 0.882 96.18 PR001577 0.61 81 PR000403 0.42 81.4 PR000302 0.64 96.72 PR001572 1.4 80.7 PR000404 0.6 81.1 PR000303 0.695 95.88 PR001575 1.74 81.7 PR000416 0.27 79.8 PR001578 1.69 81.4 Experiment 1 Experiment 2
Example 3.9. Superantigen SEB Stimulation Assay
[0532] This example is intended to investigate the activation effect of PD-L1×CTLA4 bispecific antibody molecules on peripheral blood mononuclear cells (PBMCs). In the first step, the isolated human PBMC cells (MT-Bio) were firstly added to a 96-well plate (Corning, #3799) at 100 μL/well (1×10.sup.5 cells/well). Then, the antibody molecules at different concentrations were added at 100 μL/well, wherein the antibody concentrations may be the final concentration of (100 nM, 10 nM, 1 nM, 0.1 nM, 0.01 nM), or a concentration obtained by mixing two antibodies in a certain ratio, and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The mixture was incubated at 37° C. for 30 min. Thereafter, the superantigen staphylococcal enterotoxin B (SEB) was added at 50 μL/well to make a final concentration of 100 ng/mL or 10 ng/mL. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 96 h or 120 h, and the supernatant was collected. In the second step, the concentration of IL-2 in the collected supernatant was determined using an IL-2 ELISA kit (Biolegend, #431805), and the procedures were as described in the specification of the kit. The data were processed and analyzed by plotting using a GraphPad Prism 8 software.
[0533] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 and anti-PD-L1 IgG monoclonal antibody PR000416 were used as positive control molecules.
[0534] As shown in
[0535] As shown in
[0536] As shown in
[0537] As shown in
[0538] As shown in
Example 3.10. Mixed Lymphocyte Reaction (MLR)
[0539] This example is intended to investigate the T cell activation effect of PD-L1×CTLA4 bispecific antibody molecules by the mixed lymphocyte reaction (MLR). In the first step, the recombinant human interleukin 4 (IL-4, R&D Systems, #204-GMP) and the recombinant human GM-CSF (R&D Systems, #215-GM) were added to the first donor PBMC cells (MT-Bio). After 6 days of induction, immature human CD14.sup.+ dendritic cells (iDC cells) were obtained. 1 μg/mL lipopolysaccharide (LPS, Sigma, #L2630) was then added, and after 24 h of induction, mature dendritic cells (mDC cells) were obtained. In the second step, T lymphocytes were isolated from the second donor PBMC cells (MT-Bio) using a T cell isolation kit (StemCell, #17951). In the third step, the obtained T cells and mDC cells were seeded in a 96-well plate (T cells at 1×10.sup.5/well and mDC cells at 1×10.sup.4/well) at a ratio of 10:1. Then, antibody molecules at different concentrations were added at 100 μL/well, wherein the antibody concentrations may be the final concentration of (100 nM, 10 nM, 1 nM, 0.1 nM, 0 nM), or a concentration obtained by mixing two antibodies in a certain ratio, and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 5 days. In the fourth step, supernatants on day 3 and on day 5 were each collected. The IL-2 concentration in the 3-day supernatant was determined using an IL-2 ELISA kit (Thermo, #88-7025-88), and the IFN-γ concentration in the 5-day supernatant was determined using an IFN-γ ELISA kit (Thermo, #88-7316-88).
[0540] As shown in
[0541] As shown in
Example 3.11. Anti-Tumor Efficacy of Bispecific Antibody Molecules
[0542] In this study, in order to evaluate the in vivo anti-tumor effect of PD-L1×CTLA4 antibody, female B6-PD1/CTLA4 transgenic mice aged 6-8 weeks were subcutaneously inoculated with MC38-hPDL1 cells (human PD-L1 was overexpressed on MC38 cells). When the mean tumor value reached about 100 mm.sup.3, tumor-bearing mice were grouped according to tumor volume, and then the antibody drug diluted with PBS at a specific concentration was administered intraperitoneally (i.p.) at a specific dose and frequency. The dosing regimen used in this example: twice a week for a total of 8 doses (BIW×4 weeks). PBS was used as a blank control, 3 mg/kg PR001573 was used as a bispecific antibody administration group, and 3 mg/kg ipilimumab plus 3 mg/kg atezolizumab were used as a combination administration group. Tumor volume and body weight of mice were measured on days 6, 9, 12, 15, 19, 22, 26, 29 and 33 after tumor inoculation.
[0543] The tumor volume was calculated as follows:
tumor volume (mm.sup.3)=0.5×(long diameter of tumor×short diameter of tumor.sup.2).
[0544] As shown in
Example 3.12. Summary
[0545] In this example, PD-L1×CTLA4 bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-PD-L1 IgG antibody and the antigen-binding domain VH of anti-CTLA4 HCAb antibody. This shows the flexibility of constructing a bispecific antibody molecular structure based on HCAb. By regulating the functional activity of PD-L1 and CTLA4 ends through different structure types, relative positions, binding valence and other parameters, different activity combinations are designed to meet the requirements of different dose combinations of combination drugs in the clinic.
[0546] For example, when VH of anti-CTLA4 antibody is at N-terminus of anti-PD-L1 IgG antibody, both PD-L1 end and CTLA4 end of the bispecific antibody molecules PR000300 and PR000301 can almost completely retain activity comparable to their parent monoclonal antibody, and those bispecific antibody molecules show comparable or even stronger T cell activation ability than the 1:1 concentration combination of the bispecific antibody molecule and parent monoclonal antibody in in vitro functional experiments such as mixed lymphocyte reaction and superantigen stimulation experiments. Therefore, this structure can be used to achieve a 1:1 dose combination of combination drugs. The mouse tumor efficacy model also proves that the bispecific antibody PR001573 of that structure has the same efficacy as the combination drugs.
[0547] For another example, when VH of anti-CTLA4 is at the C-terminus of anti-PD-L1 IgG or in Fab-HCAb structure, the PD-L1 ends of bispecific antibody molecules PR000302, PR000303 and PR000404 almost completely retain activity comparable to their parent monoclonal antibody, but the CTLA4 ends of those bispecific antibody molecules have weakened activity to different degrees. Therefore, this structure can be used to achieve a 3:1 or even 10:1 dose combination of combination drugs in the clinic.
Example 4. HER2×CTLA4 Bispecific Antibodies
Example 4.1. Background
[0548] Cytotoxic T lymphocyte-associated antigen 4 (CTLA4) is a negative regulator expressed on T cells. After binding to CD80 or CD86 on antigen presenting cells, the CTLA4 blocks the co-stimulatory signal of CD28 and simultaneously down-regulates the activity of T cells, thereby playing a role in immunosuppression. CTLA4-mediated inhibition mechanisms are often responsible for the escape of tumor cells from the immune system. By blocking the interaction between CTLA4 and its ligand, the activity of T cells can be restored, and the anti-tumor ability can be enhanced. Ipilimumab (trade name: Yervoy®) is the first anti-CTLA4 monoclonal antibody drugs approved for marketing, and is also the first product in t the era of tumor immunotherapy. Ipilimumab has a better therapeutic effect on the treatment of advanced melanoma, but also brings high immune-related side effects, with an incidence rate of the related grade 3-5 adverse reactions of up to 50%, which seriously influences its clinical application. The toxic and side effects of ipilimumab are mostly related to the CTLA4 targets, and in the current combination regimens of the PD-1/PD-L1 inhibitor and the CTLA4 inhibitor, the CTLA4 inhibitor, whether ipilimumab or tremelimumab, is usually selected at a lower dose.
[0549] In order to reduce the toxic and side effects of CTLA4 inhibitors, one of the methods worth trying is the targeted delivery of CTLA4 inhibitors into tumor tissues, so that the relevant T cell-mediated responses are limited to the tumor microenvironment, thereby reducing the risk of cytokine release syndrome. This targeted delivery can be achieved by intratumoral injection of CTLA4 inhibitors, but the intratumoral injection method involves both the risk of surgical operation and is limited to some superficial accessible tumor tissues. This example provides another targeted delivery method, in which antibodies that recognize tumor-associated antigens were used to redirect CTLA4 inhibitors into a specific tumor microenvironment where they can relieve T cell immunosuppressive signals and restore T cell function.
[0550] In this example, we constructed bispecific antibodies targeting both HER2 and CTLA4 to improve anti-tumor efficacy and safety through one or more mechanisms of action. Firstly, the HER2×CTLA4 bispecific antibody activates T cells by blocking the CTLA4 signaling pathway, while retaining the original mechanism of action of HER2 inhibitors (preventing dimerization of HER2, promoting internalization and degradation of HER2, and inhibiting downstream phosphorylation signals). Secondly, the HER2×CTLA4 bispecific antibody is enriched in tumor tissue highly expressing HER2 and can specifically relieve CTLA4 inhibition signals in a tumor microenvironment to activate T cells, so that toxic and side effects caused by non-specific activation of CTLA4 monoclonal antibodies in a peripheral system are reduced. Thirdly, the HER2×CTLA4 bispecific antibody can selectively retain Fc effector function (e.g., ADCC), thereby specifically killing inhibitory T cells highly expressing CTLA4 such as Treg cells by CTLA4 or specifically killing tumor cells highly expressing HER2 by HER2 in a tumor microenvironment. In addition, the bispecific antibody, as a drug product, is more advantageous in terms of economy and convenience of administration than the combination of two drug products.
Example 4.2. Acquisition of Anti-HER2 IgG Antibodies and Anti-CTLA4 HCAb Antibodies
[0551] In this example, anti-HER2 IgG antibodies trastuzumab and pertuzumab were used, the corresponding amino acid sequences of which were derived from the IMGT database, see Table 4-11.
[0552] The fully human anti-CTLA4 HCAb antibody PR000184 (Table 4-11) used in this example was derived from Harbour HCAb mice, and was found as described in Example 3.2.2.
Example 4.3. Construction of Bispecific Antibody Molecules Using Anti-HER2 IgG Antibodies and Anti-CTLA4 HCAb Antibodies
[0553] In this example, anti-HER2×CTLA4 bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-HER2 IgG antibody PR000210 (trastuzumab analog) or PR000672 (pertuzumab analog) and the antigen-binding domain VH of the anti-CTLA4 HCAb antibody PR000184.
[0554] In this and subsequent examples, the anti-HER2 IgG monoclonal antibody PR000210 (trastuzumab analog) or PR000672 (pertuzumab analog) was used as a positive control molecule, and was also the parent monoclonal antibody of the HER2 end of the HER2×CTLA4 bispecific antibody molecule.
[0555] In this and subsequent examples, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the HER2×CTLA4 bispecific antibody molecule.
Example 4.3.1. Construction of Molecules of Fab-HCAb Symmetric Structures
[0556] HER2×CTLA4 bispecific antibody molecules of Fab-HCAb symmetric structures were designed according to the structures described in Example 1.1 using anti-HER2 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 4-1. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 4-2.
TABLE-US-00026 TABLE 4-1 HER2 × CTLA4 bispecific antibody molecules of Fab-HCAb symmetric structures First Second linker linker peptide peptide Bispecific HER2 CTLA4 (between (between Structure antibody antibody antibody Fab and VH_B and Fc type No. molecules (Fab) (VH_B) VH_B) CH2) (mutation) 1 PR000305 PR000210 PR000184 None Human IgG1 Human IgG1 hinge 1 PR000653 PR000210 PR000184 GS_7 Human IgG1 Human IgG1 hinge 1 PR000654 PR000210 PR000184 GS_15 Human IgG1 Human IgG1 hinge 1 PR000655 PR000210 PR000184 H1_15 Human IgG1 Human IgG1 hinge 1 PR000656 PR000210 PR000184 None Human IgG1 Human IgG1 hinge (C220S) 1 PR000658 PR000210 PR000184 GS_15 Human IgG1 Human IgG1 hinge (C220S) 1 PR000659 PR000210 PR000184 H1_15 Human IgG1 Human IgG1 hinge (C220S) 1 PR000706 PR000210 PR000184 GS_7 G5-LH Human IgG1 1 PR000716 PR000210 PR000184 GS_15 Human IgG1 Human IgG1 hinge (L234A, (C220S) L235A, P329G) 1 PR000717 PR000210 PR000184 GS_15 Human IgG1 Human IgG1 hinge (S239D, (C220S) I332E)
TABLE-US-00027 TABLE 4-2 Expression of HER2 × CTLA4 bispecific antibody molecule proteins of Fab-HCAb symmetric structures Plasmid Bispecific transfection ratio Yield (mg/L) Structure antibody Expression system (short chain:long after first SEC-HPLC No. molecules and volume chain) purification purity (%) 1 PR000305 HEK293-F (30 ml) 2:3 70.00 87.17 1 PR000653 HEK293-F (30 ml) 3:2 69.85 100.00 1 PR000654 HEK293-F (30 ml) 3:2 62.87 100.00 1 PR000655 HEK293-F (30 ml) 3:2 102.14 97.82 1 PR000656 HEK293-F (30 ml) 3:2 79.67 99.52 1 PR000658 HEK293-F (30 ml) 3:2 77.33 97.10 1 PR000659 HEK293-F (30 ml) 3:2 86.88 95.18 1 PR000706 HEK293-F (30 ml) 3:2 40.87 100.00 1 PR000716 HEK293-F (30 ml) 3:2 54.39 100.00 1 PR000717 HEK293-F (30 ml) 3:2 38.33 100.00
Example 4.3.2. Construction of molecules of IgG-VH tetravalent symmetric structure
[0557] HER2×CTLA4 bispecific antibody molecules of IgG-VH tetravalent symmetric structures were designed according to the structures described in Example 1.2 using anti-HER2 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 4-3. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 4-4.
TABLE-US-00028 TABLE 4-3 HER2 × CTLA4 bispecific antibody molecules of IgG-VH tetravalent symmetric structures VH_B Bispecific HER2 CTLA4 position Structure antibody antibody antibody relative to Linker Fc type No molecules (IgG) (VH_B) IgG peptide (mutation) 5 PR000539 PR000210 PR000184 C-terminus of L-GS_15-RT Human IgG1 heavy chain 5 PR000540 PR000210 PR000184 C-terminus of L-H1_15-RT Human IgG1 heavy chain 5 PR000714 PR000210 PR000184 C-terminus of L-GS_15-RT Human IgG1 heavy chain (L234A, L235A, P329G) 5 PR000715 PR000210 PR000184 C-terminus of L-GS_15-RT Human IgG1 heavy chain (S239D, I332E) 3 PR001583 PR000210 PR000184 N-terminus of KL-H1_15- Human IgG1 heavy chain RT 4 PR001584 PR000210 PR000184 N-terminus of KL-H1_15- Human IgG1 light chain AS 3 PR001586 PR000210 PR000184 N-terminus of KL-H1_15- Human IgG1 heavy chain RT (S239D, I332E) 4 PR001974 PR000210 PR000184 N-terminus of KL-H1_15- Human IgG1 light chain AS (S239D, I332E) 3 PR001588 PR000672 PR000184 N-terminus of KL-H1_15- Human IgG1 heavy chain RT 4 PR001589 PR000672 PR000184 N-terminus of KL-H1_15- Human IgG1 light chain AS 3 PR001591 PR000672 PR000184 N-terminus of KL-H1_15- Human IgG1 heavy chain RT (S239D, I332E)
TABLE-US-00029 TABLE 4-4 Expression of HER2 × CTLA4 bispecific antibody molecule proteins of IgG-VH tetravalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 5 PR000539 HEK293-F (30 ml) 188.33 100.00 5 PR000540 HEK293-F (30 ml) 261.33 99.94 5 PR000714 HEK293-F (30 ml) 34.33 98.21 5 PR000715 HEK293-F (30 ml) 32.00 99.05 3 PR001583 HEK293-F (40 ml) 153.25 96.07 4 PR001584 HEK293-F (40 ml) 147.25 95.15 3 PR001586 HEK293-F (40 ml) 112.50 96.26 4 PR001974 HEK293-F (40 ml) 75.00 100 3 PR001588 HEK293-F (50 ml) 35.21 100 4 PR001589 HEK293-F (50 ml) 39.45 100 3 PR001591 HEK293-F (50 ml) 25.94 100
Example 4.3.3. Construction of Molecules of IgG-VH(2) Hexavalent Symmetric Structures
[0558] HER2×CTLA4 bispecific antibody molecules of IgG-VH(2) hexavalent symmetric structures were designed according to the structures described in Example 1.3 using anti-HER2 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 4-5. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 4-6.
TABLE-US-00030 TABLE 4-5 HER2 × CTLA4 bispecific antibody molecules of IgG-VH(2) hexavalent symmetric structures Second linker First linker peptide Bispecific HER2 CTLA4 peptide (between Structure antibody antibody antibody (between Fc VH_B and Fc type No. molecules (IgG) (VH_B) and VH_B) VH_B) (mutation) 7 PR000541 PR000210 PR000184 L-GS_15-RT GS_5 Human IgG1 7 PR000542 PR000210 PR000184 L-H1_15-RT GS_5 Human IgG1 7 PR001579 PR000210 PR000184 L-H1 15-RT GS_15 Human IgG1 7 PR001580 PR000210 PR000184 L-H1_15-RT GS 20 Human IgG1 7 PR001581 PR000210 PR000184 L-H1_15-RT H1_15 Human IgG1 7 PR001582 PR000210 PR000184 GS_15 GS_5 Human IgG1 (S239D, I332E)
TABLE-US-00031 TABLE 4-6 Expression of HER2 × CTLA4 bispecific antibody molecule proteins of IgG-VH(2) hexavalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 7 PR000541 HEK293-F (30 ml) 66 98.75 7 PR000542 HEK293-F (30 ml) 125 99.83 7 PR001579 HEK293-F (40 ml) 127 98.23 7 PR001580 HEK293-F (40 ml) 120 98.04 7 PR001581 HEK293-F (40 ml) 140 98.18 7 PR001582 HEK293-F (40 ml) 39.5 98.19
Example 4.3.4. Construction of Molecules of 2×VH-IgG Hexavalent Symmetric Structures
[0559] HER2×CTLA4 bispecific antibody molecules of 2×VH-IgG hexavalent symmetric structures were designed according to the structures described in Example 1.4 using anti-HER2 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 4-7. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 4-8.
TABLE-US-00032 TABLE 4-7 HER2 × CTLA4 bispecific antibody molecules of 2 × VH-IgG hexavalent symmetric structures First linker Second linker peptide peptide Bispecific HER2 CTLA4 (between (between Structure antibody antibody antibody VH_B and VH_B and Fc type No. molecules (IgG) (VH_B) VL_A) VH_A) (mutation) 9 PR001585 PR000210 PR000184 KL-H1_15- KL-H1_15-RT Human AS IgG1 9 PR001587 PR000210 PR000184 KL-H1_15- KL-H1_15-RT Human AS IgG1 (S239D, I332E) 9 PR001590 PR000672 PR000184 KL-H1 15- KL-H1_15-RT Human AS IgG1 9 PR001592 PR000672 PR000184 KL-H1_15- KL-H1_15-RT Human AS IgG1 (S239D, I332E)
TABLE-US-00033 TABLE 4-8 Expression of HER2 × CTLA4 bispecific antibody molecule proteins of 2 × VH-IgG hexavalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 9 PR001585 HEK293-F (50 ml) 27.6 100 9 PR001587 HEK293-F (50 ml) 19.8 100 9 PR001590 HEK293-F (50 ml) 8.2 n.d. 9 PR001592 HEK293-F (50 ml) 6.4 n.d.
Example 4.3.5. Construction of Molecules of Fab-Fc-VH(n) Bivalent or Trivalent Asymmetric Structures
[0560] HER2×CTLA4 bispecific antibody molecules of Fab-Fc-VH(n, n={1, 2}) asymmetric structures were designed according to the structures described in Example 1.5 and Example 1.6 using anti-HER2 IgG antibodies and anti-CTLA4 heavy-chain antibodies, with the results summarized in Table 4-9. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 4-10.
TABLE-US-00034 TABLE 4-9 HER2 × CTLA4 bispecific antibody molecules of Fab-Fc-VH(n) asymmetric structures Bispecific HER2 CTLA4 Structure Number of Fc type of Fc type of Structure antibody antibody antibody of Fab repetition n Linker Fab end VH_B end No. molecules (Fab) (VH_B) end for VH_B peptide (mutation) (mutation) 11 PR000916 PR000210 PR000184 Normal 1 None Human IgG1 Human IgG1 (knob) (hole) 11 PR000917 PR000210 PR000184 Normal 1 None Human IgG1 Human IgG1 (knob, DE) (hole, DE) 14 PR002666 PR000210 PR000184 Normal 2 GS_5 Human IgG1 Human IgG1 (knob) (hole) 12 PR002667 PR000210 PR000184 Normal 2 GS_15 Human IgG1 Human IgG1 (knob) (hole) 4 PR002668 PR000210 PR000184 Normal 2 GS_5 Human IgG1 Human IgG1 (knob, DE) (hole, DE) 1 PR002669 PR000210 PR000184 Normal 2 GS_15 Human IgG1 Human IgG1 (knob, DE) (hole, DE) 18 PR002670 PR000210 PR000184 cross 2 GS_5 Human IgG1 Human IgG1 Fd/LC (knob) (hole) 18 PR002671 PR000210 PR000184 cross 2 GS_15 Human IgG1 Human IgG1 Fd/LC (knob) (hole) 18 PR002672 PR000210 PR000184 cross 2 GS_5 Human IgG1 Human IgG1 Fd/LC (knob, DE) (hole, DE) 18 PR002673 PR000210 PR000184 cross 2 GS_15 Human IgG1 Human IgG1 Fd/LC (knob, DE) (hole, DE)
[0561] (mutation code: Knob: S354C, T366W; Hole: Y349C, T366S, L368A, Y407V; DE: S239D, I332E.)
TABLE-US-00035 TABLE 4-10 Expression of HER2 × CTLA4 bispecific antibody molecule proteins of Fab-Fc-VH(n) asymmetric structures Bispecific Plasmid Yield (mg/L) Structure antibody Expression system transfection ratio after first SEC-HPLC No. molecules and volume (chain 2:3:1) purification purity (%) 11 PR000916 HEK293-F (50 ml) 1:1:1 30.4 98.54 11 PR000917 HEK293-F (50 ml) 1:1:1 13.9 97.62 14 PR002666 HEK293-F (40 ml) 3:2:5 147.8 79.59 14 PR002667 HEK293-F (40 ml) 3:2:5 196.5 79.31 14 PR002668 HEK293-F (40 ml) 3:2:5 10.8 82.76 14 PR002669 HEK293-F (40 ml) 3:2:5 35.5 70 18 PR002670 HEK293-F (40 ml) 3:2:5 94.8 74.19 18 PR002671 HEK293-F (40 ml) 3:2:5 150 76.19 18 PR002672 HEK293-F (40 ml) 3:2:5 3 84.9 18 PR002673 HEK293-F (40 ml) 3:2:5 8 81.31
Example 4.3.6. Sequences of HER2×CTLA4 Bispecific Antibody Molecules and Control Molecules
[0562] The sequence numbers corresponding to the sequences of the HER2×CTLA4 bispecific antibody molecules constructed in this example, the corresponding parent monoclonal antibody molecules such as the HER2 monoclonal antibody and the CTLA4 monoclonal antibody, and the control molecules are listed in Table 4-11, Table 4-12 and Table 4-13. The structure numbers in Table 4-13 correspond to those in Table 1-1 and
TABLE-US-00036 TABLE 4-11 Control molecules and parent monoclonal antibodies Antibody No. Antibody PR000210 Anti-HER2 monoclonal antibody trastuzumab analog, hIgG1 PR000672 Anti-HER2 monoclonal antibody pertuzumab analog, hIgG1 PR000184 Anti-CTLA4 heavy-chain antibody CL5v3, hIgG1 PR000218 Anti-CTLA4 heavy-chain antibody CL5v3, hIgG1(S239D, I332E)
TABLE-US-00037 TABLE 4-12 Sequence numbers of sequences and CDR sequences of control molecules and parent monoclonal antibodies Antibody Light Heavy No. chain chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 PR000210 351 305 286 238 171 190 215 19 67 127 PR000672 359 315 293 247 176 196 220 23 74 132 PR000184 None 303 None 236 None None None 17 65 125 PR000218 None 306 None 236 None None None 17 65 125
TABLE-US-00038 TABLE 4-13 Sequence numbers of HER2 × CTLA4 bispecific antibody molecules of this example Structure Antibody Polypeptide Polypeptide Polypeptide No. No. chain 1 chain 2 chain 3 1 PR000305 367 368 None 5 PR000539 351 374 None 5 PR000540 351 375 None 7 PR000541 351 376 None 7 PR000542 351 377 None 1 PR000653 367 378 None 1 PR000654 367 379 None 1 PR000655 367 380 None 1 PR000656 367 381 None 1 PR000658 367 382 None 1 PR000659 367 383 None 1 PR000706 367 385 None 5 PR000714 351 386 None 5 PR000715 351 387 None 1 PR000716 367 388 None 1 PR000717 367 389 None 11 PR000916 351 391 390 11 PR000917 351 393 392 7 PR001579 351 397 None 7 PR001580 351 398 None 7 PR001581 351 399 None 7 PR001582 351 400 None 3 PR001583 351 401 None 4 PR001584 402 305 None 9 PR001585 402 401 None 3 PR001586 351 403 None 9 PR001587 402 403 None 3 PR001588 359 404 None 4 PR001589 405 315 None 9 PR001590 405 404 None 3 PR001591 359 406 None 9 PR001592 405 406 None 4 PR001974 402 409 None 14 PR002666 351 391 434 14 PR002667 351 391 435 14 PR002668 351 393 436 14 PR002669 351 393 437 18 PR002670 367 438 434 18 PR002671 367 438 435 18 PR002672 367 439 436 18 PR002673 367 439 437
TABLE-US-00039 TABLE 4-14 Sequence numbers of CDRs of antigen-binding domains of HER2 × CTLA4 bispecific antibody molecules Antigen- Structure binding No. Antibody No. domain No. LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 1 PR000305, PR000653, #1 171 190 215 19 67 127 PR000656, PR000658, #2 None None None 17 65 125 PR000659, PR000706, PR000716, PR000717 PR000654, PR000655, 3 PR001583, PR001586 #1 171 190 215 19 67 127 #2 None None None 17 65 125 3 PR001588, PR001591 #1 176 196 220 23 74 132 #2 None None None 17 65 125 4 PR001584, PR001974 #1 171 190 215 19 67 127 #2 None None None 17 65 125 4 PR001589 #1 176 196 220 23 74 132 #2 None None None 17 65 125 5 PR000539, PR000540, #1 171 190 215 19 67 127 PR000714, PR000715 #2 None None None 17 65 125 7 PR000541, PR000542, #1 171 190 215 19 67 127 PR001581, PR001582 #2 None None None 17 65 125 PR001579, PR001580, 9 PR001585, PR001587 #1 171 190 215 19 67 127 #2 None None None 17 65 125 9 PR001590, PR001592 #1 176 196 220 23 74 132 #2 None None None 17 65 125 11 PR000916, PR000917 #1 171 190 215 19 67 127 #2 None None None 17 65 125 14 PR002666, PR002667, #1 171 190 215 0 67 127 PR002668, PR002669 #2 None None None 17 65 125 18 PR002670, PR002671, #1 171 190 215 19 67 127 PR002672, PR002673 #2 None None None 17 65 125
Example 4.4. Binding to CTLA4
[0563] This example is intended to investigate the binding activity of the HER2×CTLA4 bispecific antibody molecules to CTLA4.
Example 4.4.1. Binding to CHO-K1 Cells CHO-K1/hCTLA4 Highly Expressing Human CTLA4
[0564] The binding ability of the antibody molecules to a CHO-K1 cell line CHO-K1/hCTLA4 cells (ChemPartner) and other cells highly expressing human CTLA4 was determined by flow cytometry FACS. Specifically, CHO-K1/hCTLA4 cells were digested and resuspended in an F12K medium, with the cell density adjusted to 2×10.sup.6 cells/mL. Thereafter, the CHO-K1/hCTLA4 cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 300 nM, or a total of 12 concentrations obtained by a 4-fold gradient dilution from the highest final concentration of 300 nM were added to the 96-well plate at 100 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Goat human IgG (H+L) Alexa Fluor 488 conjugation, Thermo, #A11013, 1:1000 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0565] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the HER2×CTLA4 bispecific antibody molecule. The results are shown in
[0566] As shown in
[0567] As shown in
[0568] As shown in
[0569] As shown in
[0570] As shown in
TABLE-US-00040 TABLE 4-15 Binding to CHO-K1/hCTLA4 Antibody EC.sub.50 (nM) Maximum MFI Antibody EC.sub.50 (nM) Maximum MFI Antibody EC.sub.50 (nM) Maximum MFI PR000184 1.588 214.1 PR000184 1.792 1083 PR000184 3.046 2167 PR000305 5.016 157.1 PR001583 4.426 1934 PR002672 2.785 1804 PR000653 2.507 156.1 PR001584 4.531 1524 PR000654 1.612 154.2 PR001586 6.131 1861 PR000655 1.866 147.7 PR001588 7.257 2168 PR000656 3.421 144 PR001589 9.39 1866 PR000658 1.491 148.1 PR001591 5.149 2074 PR000659 1.943 158.8 PR001579 3.193 1078 PR000706 2.108 141.3 PR001580 2.649 1078 PR000716 1.395 130.6 PR001581 3.469 1074 PR000717 1.344 129.9 PR001582 22.83 1034 PR000539 1.703 148.3 PR001585 1.585 1051 PR000540 2.029 185.3 PR001587 1.717 1044 PR000714 1.64 146.5 PR001590 5.444 1048 PR000715 1.864 143 PR001592 10.4 1299 PR000541 1.711 203.2 PR000542 1.766 235.2 PR000916 4.681 150.9 PR000917 9.803 142.1 Experiment 1 Experiment 2 Experiment 3
Example 4.5. Blocking the Binding of CTLA4 to its Ligand
[0571] This example is intended to investigate the inhibitory activity of the HER2×CTLA4 bispecific antibody molecules for the binding of CTLA4 to its ligand B7-1/CD80.
Example 4.5.1. Blocking the Binding of Human CTLA4 Protein to its Ligand Protein
[0572] The inhibitory activity of the antibody molecules for the binding of human CTLA4 protein to its ligand B7-1/CD80 protein was determined by enzyme-linked immunosorbent assay (ELISA). Specifically, a 96-well plate was firstly coated with 2 μg/mL protein human B7-1-Fc (ACRO Biosystems, #B71-H5259) at 100 μL/well and placed at 4° C. overnight. The plate was then rinsed 3 times with a PBST buffer (a PBS buffer containing 0.05% Tween-20), added with a blocking buffer (a PBS buffer containing 5% skim milk powder), and incubated at 37° C. for 1 h. Then, the antibody molecules at a total of 7 concentrations obtained by a 3-fold gradient dilution with the highest final concentration of 200 nM were added at 90 μL/well. The mixture was mixed well and incubated at 37° C. for 20 min. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. Then, biotinylated human CTLA4-Fc protein (ACRO Biosystems, #CT4-H82F3) was added at 10 μL/well to make a final concentration of 0.25 μg/mL, and the mixture was incubated at 37° C. for 1 h. The plate was then rinsed 3 times with a PBST buffer. Then, a label Precision Protein™ StrepTactin-HRP conjugate (Bio-RAD, #1610380, diluted in a 1:4000 ratio) was added at 100 μL/well, and the mixture was incubated at 37° C. for 0.5 h. The plate was then rinsed 3 times with a PBST buffer. Then, TMB chromogenic solution was added at 100 μL/well for reaction for 15 min. Finally, a stop buffer was added to stop the reaction. The absorbance value (OD value) was read at 490 nM using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.). The data were processed and analyzed by plotting using GraphPad Prism 8 software, and inhibition curves, IC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0573] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the HER2×CTLA4 bispecific antibody molecule. The results are shown in
[0574] As shown in
[0575] As shown in
[0576] As shown in
[0577] As shown in
TABLE-US-00041 TABLE 4-16 Blocking the binding of human CTLA4 protein to B7-1 protein Antibody IC.sub.50 (nM) Antibody IC.sub.50 (nM) Antibody IC.sub.50 (nM) PR000184 2.464 PR000184 1.687 PR001579 1.152 PR000654 5.307 PR001583 2.426 PR001580 1.132 PR000655 4.024 PR001584 2.762 PR001581 1.145 PR000539 5.406 PR001586 2.012 PR001582 2.149 PR000540 6.374 PR001588 2.197 PR001585 1.306 PR000715 6.281 PR001589 2.588 PR001587 1.455 PR000541 3.314 PR001591 2.703 PR001590 1.985 PR000542 2.816 PR000541 1.718 PR001592 3.213 Experiment 1 Experiment 2
Example 4.5.2. Blocking the Binding of Human CTLA4 Cell to its Ligand Protein
[0578] The inhibitory activity of the antibody molecules for the binding of cells expressing CTLA4 to the ligand B7-1/CD80 of CTLA4 was determined by flow cytometry FACS. Specifically, a CHO-K1 cell line CHO-K1/hCTLA4 (ChemPartner) highly expressing human CTLA4 was digested and resuspended in an FACS buffer (a PBS buffer containing 2% FBS), with the cell density adjusted to 3×10.sup.6 cells/mL. The CHO-K1/hCTLA4 cells were seeded in a 96 well plate (3×10.sup.5 cells/well) at 100 μL/well and centrifuged at 500 g at 4° C. for 5 min, and the supernatant was discarded. Then, the serially diluted antibody molecules were added to the 96-well plate at 100 μL/well, and the mixtures were well mixed. The antibody molecules might serially diluted 3-fold from the highest final concentration 200 nM to obtain a total of 8 concentrations. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. Then, 3 μg/mL biotinylated ligand protein human B7-1-Fc-biotin (ACRO Biosystems, #B71-H82F2) was added to the 96-well plate at 100 μL/well, and the mixture was mixed well. The 96-well plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent label (Streptavidin, Alexa Fluor™ 488 conjugate, Thermo, #S32354, diluted in a 1:1000 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed three times with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software to convert the fluorescence signal (MFI) into the inhibition rate, and inhibition curves, IC.sub.50 values, the maximum inhibition rates and other parameters were obtained through four-parameter nonlinear fitting.
[0579] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the HER2×CTLA4 bispecific antibody molecule. The results are shown in
[0580] As shown in
[0581] As shown in
TABLE-US-00042 TABLE 4-17 Blocking the binding of human CTLA4 cell to B7-1 protein Maximum Maximum inhibition inhibition Antibody IC.sub.50 (nM) rate (%) Antibody IC.sub.50 (nM) rate (%) PR000184 1.685 99.62 PR000184 0.239 99.42 PR000539 9.0 88.02 PR002672 0.983 98.97 PR000715 10.24 89.82 PR000541 1.634 99.55 Experiment 1 Experiment 2
Example 4.6. Binding to HER2
[0582] This example is intended to investigate the binding activity of the HER2×CTLA4 bispecific antibody molecules to HER2.
Example 4.6.1. Binding to SK-BR-3 Cells Highly Expressing Human HER2
[0583] The binding ability of the antibodies to a tumor cell line SK-BR-3 (ATCC, HTB-30) highly expressing human HER2 was determined by flow cytometry FACS. Specifically, the SK-BR-3 cells were digested and resuspended in a DMEM complete medium, with the cell density adjusted to 1×10.sup.6 cells/mL. Then, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 100 nM were added at 100 μL/well. The mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Thereafter, the mixture was centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the cells in each well were rinsed twice with 200 μL of pre-cooled FACS buffer (a PBS buffer containing 0.5% BSA), and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Goat human IgG (H+L) Alexa Fluor 488 conjugation, Thermo, #A11013, 1:1000 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0584] In this example, the anti-HER2 monoclonal antibody PR000210 (trastuzumab analog) or PR000672 (pertuzumab analog) was used as a positive control molecule, and was also the parent monoclonal antibody of the HER2×CTLA4 bispecific antibody molecule. The results are shown in
[0585] As shown in
[0586] As shown in
[0587] As shown in
[0588] As shown in
[0589] As shown in
TABLE-US-00043 TABLE 4-18 Binding to SK-BR-3 EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI PR000210 1.332 11868 PR000210 2.929 31552 PR000305 1.538 12604 PR001583 3.915 32008 PR000653 1.668 12781 PR001584 7.502 32880 PR000654 1.712 13168 PR001586 4.717 35248 PR000655 1.57 12201 PR001579 3.056 36444 PR000656 1.664 12358 PR001580 3.421 35754 PR000658 1.474 12964 PR001581 3.687 34744 PR000659 1.653 13672 PR001582 3.665 30517 PR000706 1.562 13355 PR001585 n.d. 26700 PR000716 1.386 13418 PR001587 n.d. 26800 PR000717 1.466 13684 PR000539 1.323 9460 PR000540 1.471 10894 PR000541 1.282 7378 PR000542 1.295 9019 EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI PR000210 1.913 7692 PR000210 1.863 10438 PR000916 3.688 9874 PR001586 2.975 9436 PR001974 4.119 8478 EC.sub.50 Maximum Antibody (nM) MFI PR000672 3.119 33400 PR001588 8.445 37900 PR001589 5.52 37100 PR001591 6.861 35900 PR001590 n.d. 34000 PR001592 n.d. 32800
Example 4.7. Superantigen SEB Stimulation Assay
[0590] This example is intended to investigate the activation effect of HER2×CTLA4 bispecific antibody molecules on peripheral blood mononuclear cells (PBMCs). In the first step, the isolated human PBMCs (MT-Bio) were firstly adjusted to 5×10.sup.6 cells/mL. Thereafter, PBMC was added to a 96-well plate (Corning, #3799) at 50 μL/well. Then, the antibody molecules at different concentrations were added at 100 μL/well, wherein the antibody concentrations may be the final concentration gradient of (150 nM, 30 nM, 1 nM) or (80 nM, 8 nM, 0.8 nM, 0.08 nM); and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The mixture was incubated at 37° C. for 30 min. Thereafter, 400 ng/mL superantigen staphylococcal enterotoxin B (SEB) was added at 50 μL/well to make a final concentration of 100 ng/mL. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 72 h or 96 h, and the supernatant was collected. In the second step, the concentration of IL-2 in the collected supernatant was determined using an IL-2 assay kit (Thermo, #88-7025-77). The data were processed and analyzed by plotting using a GraphPad Prism 8 software.
[0591] In this example, the anti-CTLA4 HCAb monoclonal antibody PR000184 or PR000218 was used as a positive control molecule, and was also the parent monoclonal antibody of the CTLA4 end of the HER2×CTLA4 bispecific antibody molecule. PR000218 was an ADCC-enhanced variant constructed by Fc mutation on the basis of PR000184.
[0592] As shown in
[0593] As shown in
[0594] As shown in
[0595] As shown in
[0596] As shown in
[0597] As shown in
Example 4.8. Inhibition on Proliferation of HER2.SUP.+ Cells
[0598] This example is intended to investigate the inhibition of the HER2×CTLA4 bispecific antibody molecules on the proliferation of the tumor cell line SK-BR-3 (ATCC, HTB-30) highly expressing human HER2. Specifically, SK-BR-3 cells were digested and resuspended in a DMEM complete medium. The cells were seeded in a 96-well plate (Perkin Elmer, #6005225) at 2000 cells/50 μL, and incubated in an incubator at 37° C. with 5% CO.sub.2 overnight. The next day, the antibody molecules at a total of 6 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 100 nM were added at 50 μL/well. The mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 7 days. Thereafter, 100 μL of CellTiter-Glo (Promega, #G7573) was added to each well, and the mixture was mixed on a horizontal shaker for 10 min to induce cell lysis. Finally, chemiluminescence values were measured using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.). The data were processed and analyzed by plotting using GraphPad Prism 8 software, and inhibition rates and other parameters were obtained through four-parameter nonlinear fitting.
[0599] In this example, the anti-HER2 monoclonal antibody PR000210 (trastuzumab analog) was used as a positive control molecule, and was also the parent monoclonal antibody of the HER2×CTLA4 bispecific antibody molecule. The results are shown in
[0600] As shown in
[0601] As shown in
[0602] As shown in
[0603] As shown in
TABLE-US-00044 TABLE 4-19 Inhibition on proliferation of SK-BR-3 Maximum Maximum inhibition inhibition Antibody IC.sub.50 (nM) rate (%) Antibody IC.sub.50 (nM) rate (%) PR000655 0.4428 28.07 PR000210 0.19 59.39 PR000210 0.7036 36.09 PR001583 0.5974 59.68 PR000539 0.5134 35.58 PR001584 0.7672 61.11 PR000540 0.6929 39.15 PR001586 0.5712 59.35 PR000714 0.8239 37.95 PR001579 0.2543 58.32 PR000715 0.2101 40.05 PR001580 0.3418 57.62 PR000542 0.6676 27.54 PR001581 0.3581 58.55 PR001582 0.4055 60.02 PR001585 1.357 52.59 PR001587 1.732 60.67 Experiment 1 Experiment 2
Example 4.9. ADCC Effect Mediated by HER2
[0604] This example is intended to investigate the antibody-dependent cell-mediated cytotoxicity (ADCC) of HER2×CTLA4 bispecific antibody molecules to the tumor cell line BT-474 (ATCC, HTB-20) highly expressing human HER2. In the first step, target cells were labeled with DELFIA BATDA (Perkin Elmer, #C136-100). The specific labeling method was as follows. 1×10.sup.6 target cells were labeled with 2 μL of DELFIA BATDA reagent; the cells were incubated in an incubator at 37° C. with CO.sub.2 for 20 min, washed 4 times with PBS, and centrifuged at 1000 rpm for 5 min; after the last wash, the precipitate was resuspended in an RPMI-1640 medium containing 20% FBS (Thermo, #A 10491), with the cell density adjusted to 1×10.sup.5/mL. In the second step, the labeled target cells were seeded in a 96-well plate (Corning, #3599) at 100 μL/well. Then, the antibody molecules at a total of 10 concentrations obtained by a 5-fold gradient dilution with the highest final concentration of 100 nM were added at 50 μL/well. The mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 10 min. In the third step, the NK-92 MI/CD16a cells (ChemPartner) were collected as effector cells, and the cell density of NK-92 MI/CD16a was adjusted to 1.2×10.sup.6/mL. Then, the cells were added to the 96-well plate at 50 μL/well in an effect-to-target ratio of 6:1. Thereafter, the cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 4 h. In the fourth step, the cells were centrifuged at 500 g for 5 min, and then 25 μL of supernatant from each well was added to a new 96-well assay plate. Then, a DELFIA® Europium solution (Perkin Elmer, #C135-100) was added at 200 μL/well, and the plate was shaken at 250 rpm at room temperature for 15 min Finally, fluorescence values were measured using an EnVision® 2015 multifunctional microplate reader (Perkin Elmer, Inc.).
[0605] The killing rate was calculated according to the following formula:
Kill rate (%)=(ER−ETSR)/(TMR−ETSR)×100%
[0606] wherein: [0607] ER=experimental well (antibody+ effector cell+target cell); ETSR=spontaneous release well for mixed effector cell and target cell (effector cell+target cell); TMR=maximum release well for target cell (target cell+lysis buffer)
[0608] The data were processed and analyzed by plotting using GraphPad Prism 8 software, and killing rate curves of the antibodies to target cells, EC.sub.50 values, maximum killing rates and other parameters were obtained through four-parameter nonlinear fitting.
[0609] In this example, the anti-HER2 monoclonal antibody PR000210 (trastuzumab analog) was used as a positive control molecule, and was also the parent monoclonal antibody of the HER2×CTLA4 bispecific antibody molecule.
[0610] As shown in
TABLE-US-00045 TABLE 4-20 Killing target cell BT-474 by ADCC effect Maximum killing Antibody EC.sub.50 (nM) rate (%) PR000210 0.183 41.95 PR001582 0.055 94.65 PR001586 0.053 94.66
Example 4.10. Determination of the Binding Ability of Bispecific Antibody Molecules to Two Cells Simultaneously by Flow Cytometry
[0611] This example is intended to investigate the binding ability of the HER2×CTLA4 bispecific antibody molecule to SK-BR-3 cells (ATCC, HTB-30) expressing human HER2 and CHO-K1/hCTLA4 cells (ChemPartner) expressing human CTLA4 simultaneously. In the first step, CHO-K1/hCTLA4 cells and SK-BR-3 cells were fluorescently labeled with CFSE (Thermo, #C34554) and Far red (Thermo, #C34564) dyes, respectively. The specific procedures were as follows. CHO-K1/hCTLA4 cells and SK-BR-3 cells were separately resuspended in PBS and adjusted to 2×10.sup.6/mL. 5 μM CFSE and 1 μM Far red were added to CHO-K1/hCTLA4 cells and SK-BR-3 cells, respectively. The cells were incubated at 37° C. for 10 min with occasional shaking. 5-fold amount of a complete medium was added to stop staining. Thereafter, the mixture was centrifuged at 4° C. for 5 min, and the supernatant was discarded, followed by washing twice with PBS. The densities of the labeled CHO-K1/hCTLA4 cells and SK-BR-3 cells were adjusted to 4×10.sup.6/mL and 2×10.sup.6/mL, respectively. In the second step, 25 μL each of the labeled CHO-K1/hCTLA4 cells and SK-BR-3 cells were taken, and mixed well with 50 μL of antibody molecules at a total of 6 concentrations obtained by a four-fold gradient dilution with the highest final concentration of 31.25 nM. The mixture was added to a 96-well plate. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The plate was incubated at 4° C. for 1 h away from light. Thereafter, 100 μL of 4% paraformaldehyde (PFA) was added to each well to fix the cells for 10 min. Finally, fluorescence signal values were read using a BD FACS CANTOII flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The cell numbers in different quadrants were counted according to different fluorescent labels, respectively: Q1 is Far-red labeled SK-BR-3 cells (SK-BR-3.sup.+); Q3 is CFSE-labeled CHO-K1/hCTLA4 cells (CTLA4.sup.+); Q2 contains two labeled cell populations (CTLA4.sup.+& SK-BR-3.sup.+) formed by the simultaneous binding of bispecific antibody molecules to two cells. The percentage of the double-labeled positive cell population (Q2) relative to all labeled SK-BR-3 cells (Q1.sup.+ Q2) was calculated according to the following equation, which reflected the binding ability of the bispecific antibody molecules to two cells simultaneously.
Cell ratio of Q2:(Q2/(Q1+Q2))×100%
[0612] The data were processed and analyzed by plotting using GraphPad Prism 8 software, and curves of the antibodies simultaneously binding to two target cells were obtained through four-parameter nonlinear fitting.
[0613] In this example, the anti-HER2 monoclonal antibody PR000210 (trastuzumab analog) and the anti-CTLA4 monoclonal antibody PR000184 were used as control molecules, and were also parent monoclonal antibodies of the HER2×CTLA4 bispecific antibody molecule.
[0614] The panels A, B and C of
Example 4.11. Pharmacokinetic Study
[0615] In this example, the pharmacokinetic properties of antibody molecules in mice were investigated. The following antibodies were tested in this example: an anti-HER2 monoclonal antibody, PR000210 (trastuzumab analog); an HER2×CTLA4 bispecific antibody molecule of an IgG-VH tetravalent symmetric structure, PR000540; and an HER2×CTLA4 bispecific antibody molecule of an IgG-VH-VH hexavalent symmetric structure, PR000541.
[0616] The test was performed as follows: for each test antibody molecule, 3 female C57BL/6 mice weighing 18-22 g were selected and administered by intravenous injection at a dose of 5 mg/kg. The whole blood was collected before the administration and 0.5 h, 24 h (1 day), 2 days, 4 days, 7 days, 10 days and 14 days after the administration, left to stand for 30 min for coagulation, and centrifuged at 12,000 g at 4° C. for 5 min, and the isolated serum sample was cryopreserved at −80° C. until it was taken for analysis.
[0617] In this example, the drug concentration in the serum of mice was quantitatively determined by an Fc end ELISA method. The method was performed by capturing a fusion protein containing human Fc in the serum of mice using a goat anti-human Fc polyclonal antibody coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody. The plasma concentration data were analyzed using a non-compartmental analysis (NCA) model of Phoenix WinNonlin software (version 6.4) to evaluate the pharmacokinetics.
[0618] As shown in
TABLE-US-00046 TABLE 4-21 Pharmacokinetics in mice CL Vss *Terminal AUClast AUCINF Structure Antibody (mL/day/kg) (mL/kg) t½ (day) (day*ug/mL) (day*ug/mL) IgG PR000210 4.99 ± 0.93 96.2 ± 4.2 14.0 ± 1.9 470 ± 38 926 ± 177 IgG_HC-VH PR000540 4.85 ± 0.59 142 ± 18 23.1 ± 3.2 374 ± 37 884 ± 109 IgG_HC-VH- PR000541 14.3 ± 1.41 152 ± 5.86 7.58 ± 0.58 251 ± 15.7 353 ± 33.4 VH
Example 4.12. Summary
[0619] In this example, HER2×CTLA4 bispecific antibody molecules of a variety of structures are constructed using the antigen-binding domain Fab of the anti-HER2 IgG antibody and the antigen-binding domain VH of the anti-CTLA4 HCAb antibody. This shows the flexibility of constructing a bispecific antibody molecular structure based on HCAb. By regulating the functional activity of HER2 and CTLA4 ends through different structure types, relative positions, binding valence and other parameters, different activity combinations are designed to meet the requirements of different mechanisms of action. Currently, the recommended initial dose of the anti-HER2 monoclonal antibody trastuzumab is 4 mg/kg for the treatment of breast cancer and 8 mg/kg for the treatment of gastric cancer. It is slightly higher than the recommended dose of 3 mg/kg of the anti-CTLA4 monoclonal antibody Ipilimumab for the treatment of melanoma.
[0620] For example, when VH of anti-CTLA4 is at the N-terminus of anti-PD-L1 IgG, both the HER2 and CTLA4 ends of the bispecific antibody molecules (e.g., PR001583 and PR001584) can almost completely retain comparable activity to their parent monoclonal antibodies, and show similar ability to the corresponding parent monoclonal antibody in in vitro functional experiments such as a tumor cell proliferation inhibition experiment and a superantigen stimulation experiment. Therefore, this structure can be used to achieve a 1:1 dose combination of combination drugs.
[0621] For another example, both the HER2 and CTLA4 ends of bispecific antibody molecules of IgG-VH-VH hexavalent symmetric structures (e.g., PR001579, PR001580, and PR001581) can also almost completely retain comparable activity to their parent monoclonal antibodies. Therefore, this structure can be used to achieve a 1:1 dose combination of combination drugs.
[0622] For another example, when VH of anti-CTLA4 is at the C terminus of anti-HER2 IgG or in the Fab-HCAb structure, the activity of the HER2 ends of the bispecific antibody molecules (e.g., PR000539, PR000540, and PR000655) is almost comparable to their parent monoclonal antibodies, but the activity of the CTLA4 ends is weakened to different degrees. Therefore, this structure can be used to achieve the requirements for moderate or low doses of CTLA4 inhibitors in the clinic.
[0623] For another example, in the Fab-Fc-VH(2) asymmetric structure, the HER2-binding domain of the bispecific antibody molecule is a monovalent Fab structure, but its binding ability to HER2 is very close to that of the bivalent parent monoclonal antibody. This structure contains two CTLA4-binding domains formed in tandem, with similar binding ability to CTLA4 as the parent monoclonal antibody, but with reduced T cell activation ability as compared to the parent monoclonal antibody. Therefore, this structure can bring tumor target cells and T cells together to promote the formation of immune synapses, and can be used to achieve the requirements for moderate or low doses of CTLA4 inhibitors in the clinic, while also increasing the ability to specifically target tumors.
Example 5. PD-L1×4-1BB Bispecific Antibodies
Example 5.1. Background
[0624] Programmed death receptor 1 (PD-1) is mainly expressed in immune cells such as T cells. It has two ligands, i.e., programmed death ligand 1 (PD-L1) and PD-L2. PD-L1 is mainly expressed in antigen-presenting cells and a variety of tumor cells. The interaction between PD-L1 and PD-1 can down-regulate the activity of T cells, weaken the secretion of cytokines and play a role in immunosuppression. The expression of the PD-L1 protein can be detected in many human tumor tissues. The microenvironment at the tumor site can induce the expression of PD-L1 on tumor cells, and the expressed PD-L1 facilitates the occurrence and growth of tumors, induces the apoptosis of anti-tumor T cells and further protects the tumor cells from immune attack.
[0625] 4-1BB (TNFRSF9, CD137) is a transmembrane protein belonging to the TNF receptor superfamily 4-1BB is a co-stimulatory molecule expressed on a variety of immune cells. It is a multifunctional modulator of immune activity. Its expression is induced in activated T cells, NK cells and other immune cells. 4-1BB activates T cells through trimerization mediated by its ligand 4-1BBL, promoting cell proliferation and cytokine release. Anti-4-1BB agonistic antibodies have the function of inhibiting tumors. The first 4-1BB antibodies to be subjected to clinical trials were Utomilumab from Pfizer and Urelumab (BMS-663513) from Bristol-Myers Squibb. The initial clinical results of urelumab were published in 2008. Although encouraging efficacy was observed in some patients, the data showed Urelumab to cause target and dose-associated hepatotoxicity. Moreover, two patients in the clinical trial died from hepatotoxicity, resulting in the discontinuation of related clinical trials. Utomilumab has better safety enabling the dose to be increased to 10 mg/kg, but still has a poor therapeutic effect.
[0626] In this example, we constructed bispecific antibodies targeting both PD-L1 and 4-1BB to improve anti-tumor efficacy and safety through one or more mechanisms of action. Firstly, the PD-L1×4-1BB bispecific antibody can activate T cells by blocking the PD-1/PD-L1 signaling pathway. Secondly, the PD-L1 molecules highly expressed on the tumor cell surfaces can use the bispecific antibody molecules to promote the crosslinking and trimerization of the 4-1BB molecules on the T cell surfaces and activate the downstream signaling pathway, thereby promoting T cell activation and proliferation. Thirdly, the bispecific antibody molecule-mediated T cell activation is limited to the tumor microenvironment, so that the toxic and side effects caused by over-activation of T cells in normal tissues by monoclonal antibodies similar to Urelumab can be avoided.
Example 5.2. Acquisition of Anti-PD-L1 IgG Antibodies and Anti-4-1BB H2L2 or HCAb Antibodies
Example 5.2.1. Acquisition of Fully Human Anti-PD-L1 IgG Antibodies
[0627] The fully human anti-PD-L1 IgG antibody PR000265 (Table 5-8) used in this example was derived from Harbour H2L2 mice and was found as described in Example 3.2.1.
Example 5.2.2. Acquisition of Fully Human Anti-4-1BB H2L2 Antibodies
[0628] The Harbour H2L2 mouse (Harbour Antibodies BV) is a transgenic mouse carrying an immune repertoire of human immunoglobulins that produces antibodies with intact human antibody variable domains and rat constant domains.
[0629] Harbour H2L2 mice were subjected to multiple rounds of immunization with a soluble recombinant human 4-1BB-Fc fusion protein (GenScript Biotech). When the titer of the 4-1BB-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken and fused with a myeloma cell line to obtain hybridoma cells. After multiple rounds of screening and cloning of the hybridoma cells, several monoclonal antibody molecules specifically recognizing 4-1BB were identified. The monoclonal antibodies were further identified, and several candidate antibody molecules were preferentially selected according to parameters such as the binding ability to human 4-1BB, the binding ability to cynomolgus monkey 4-1BB, and the T cell activation ability. The candidate antibody molecules were then subjected to sequence analysis and optimization to obtain several variant sequences. The VL and VH sequences of the antibody were fused to the corresponding human κ light chain constant region and IgG1 heavy chain constant region sequences and expressed to obtain recombinant fully human antibody molecules. The recombinant fully human anti-4-1BB IgG antibodies PR000197 and PR000448 are listed in Table 5-8.
[0630] The binding ability of the 4-1BB antibodies PR000197 and PR000448 to a CHO-K1 cell line CHO-K1/hu 4-1BB (GenScript Biotech, M00538) highly expressing human 4-1BB was tested by flow cytometry FACS and the method described in Example 5.6. As shown in
Example 5.2.3. Acquisition of Fully Human Anti-4-1BB HCAb Antibodies
[0631] The Harbour HCAb mouse (Harbour Antibodies BV, WO2010/109165A2) is a transgenic mouse carrying an immune repertoire of human immunoglobulins, capable of producing heavy chain-only antibodies that are only half the size of conventional IgG antibodies. The antibodies produced have only human antibody heavy chain variable domains and mouse Fc constant domains.
[0632] Harbour HCAb mice were subjected to multiple rounds of immunization with a soluble recombinant human 4-1BB-Fc fusion protein (ChemPartner) or human 4-1BB-overexpressing NIH-3T3 cells (ChemPartner). When the titer of the 4-1BB-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken, from which B cells were isolated, and the CD138-positive plasma cells were sorted using a mouse plasma cell isolation kit (Miltenyi, #130-092-530). The human VH gene was amplified from plasma cells using conventional molecular biology techniques, and the amplified human VH gene fragments were constructed into mammalian cell expression plasmid pCAG vectors encoding the sequence of the heavy chain Fc region of the human IgG1 antibody. Mammal host cells (e.g., human embryonic kidney cell HEK293) were transfected with the plasmids and allowed to express antibodies to obtain a supernatant with fully human HCAb antibodies. Positive HCAb antibodies were identified by testing the supernatant with HCAb antibodies for binding to CHO-K1 cell CHO-K1/hu4-1BB highly expressing human 4-1BB by FACS. These HCAb antibodies were further identified, and several candidate HCAb antibody molecules were preferentially selected according to parameters such as the binding ability to human 4-1BB, the binding ability to cynomolgus monkey 4-1BB, and the T cell activation ability. The candidate HCAb antibody molecules were then subjected to sequence analysis and optimization to obtain several variant sequences. The VH sequence of the HCAb antibody and the Fc sequence of the heavy chain of human IgG1 were fused and expressed to obtain fully human recombinant HCAb antibody molecules. The recombinant fully human anti-4-1BB HCAb antibodies PR001758, PR001760 and PR001836 are listed in Table 5-8.
[0633] The binding ability of the 4-1BB heavy chain antibodies to CHO-K1/hu 4-1BB cells (GenScript Biotech, M00538) was tested by flow cytometry FACS and the method described in Example 5.6. As shown in
Example 5.3. Construction of Bispecific Antibody Molecules of FIT-Ig Structure Using Anti-PD-L1 IgG Antibodies and Anti-4-1BB IgG Antibodies
[0634] In this example, anti-PD-L1×4-1BB bispecific antibody molecules of FIT-Ig structures were constructed using the antigen-binding domain Fab of the anti-PD-L1 IgG antibody PR000265 or PR000151 (atezolizumab analog) and the antigen-binding domain Fab of the anti-4-1BB IgG antibody PR000197 or PR000448. The FIT-Ig structures can be designed by referring to WO2015/103072A1, with the structures shown in
TABLE-US-00047 TABLE 5-1 PD-L1 × 4-1BB bispecific antibody molecules of FIT-Ig structures Struc- Bispecific PD-L1 4-1BB 4-1BB Linker Fc type ture antibody antibody antibody Fab pep- (mu- No. molecules (Fab A) (Fab B) position tide tation) FIT-Ig PR000701 PR000265 PR000197 Close None Human to Fc IgG4 FIT-Ig PR003052 PR000151 PR000448 Close None Human to Fc IgG4
TABLE-US-00048 TABLE 5-2 Expression of PD-L1 × 4-1BB bispecific antibody molecule proteins of FIT-Ig structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) FIT-Ig PR000701 HEK293-F (30 ml) 198.0 79.88 FIT-Ig PR003052 HEK293-6E (40 ml) 47.5 87.76
TABLE-US-00049 TABLE 5-3 Sequence numbers of PD-L1 × 4-1BB bispecific antibody molecules of FIT-Ig structures Antibody Polypeptide Polypeptide Polypeptide No. chain 1 chain 2 chain 3 PR000701 384 371 355 PR003052 452 451 355
Example 5.4. Construction of Bispecific Antibody Molecules Using Anti-PD-L1 IgG Antibodies and Anti-4-1BB HCAb Antibodies
[0635] In this example, PD-L1×4-1BB bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-PD-L1 IgG antibody PR000265 and the antigen-binding domain VH of the anti-4-1BB HCAb antibody PR001758, PR001760, or PR001836.
[0636] In this and subsequent examples, the anti-PD-L1 IgG monoclonal antibody PR000265 was used as a positive control molecule, and was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×4-1BB bispecific antibody molecules. The anti-4-1BB IgG monoclonal antibody Urelumab (IgG4) or Utomilumab (IgG2) was used as a positive control molecule. The PD-L1×4-1BB bispecific antibody molecule PR001289 was used as a positive control molecule, the sequences of which are derived from the sequences of the 4-1BB×PD-L1 single-domain antibody disclosed in the patent WO2017/123650A2.
Example 5.4.1. Construction of Molecules of Fab-HCAb Symmetric Structures
[0637] PD-L1×4-1BB bispecific antibody molecules of Fab-HCAb symmetric structures were designed according to the structures described in Example 1.1 using anti-PD-L1 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 5-4. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 5-5.
TABLE-US-00050 TABLE 5-4 PD-L1 × 4-1BB bispecific antibody molecules of Fab-HCAb symmetric structures First Second linker linker peptide peptide (between (between Struc- Bispecific PD-L1 4-1BB Fab VH_B Fc type ture antibody antibody antibody and and mut- No. molecules (Fab) (VH_B) VH_B) CH2) (ation) 1 PR004270 PR000265 PR001760 H1_15 Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A) 2 PR007163 PR000265 PR001760 None Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A) 1 PR007164 PR000265 PR001760 None Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A)
TABLE-US-00051 TABLE 5-5 Expression of PD-L1 × 4-1BB bispecific antibody molecule proteins of Fab-HCAb symmetric structures Plasmid Bispecific transfection ratio Yield (mg/L) Structure antibody Expression system (short chain:long after first SEC-HPLC No. molecules and volume chain) purification purity (%) 1 PR004270 HEK293-6E (40 ml) 3:2 77.50 92.33 2 PR007163 HEK293 (100 ml) 3:1 13 97.84 1 PR007164 HEK293 (100 ml) 3:1 47 93.37
Example 5.4.2. Construction of Molecules of IgG-VH Tetravalent Symmetric Structure
[0638] PD-L1×4-1BB bispecific antibody molecules of IgG-VH tetravalent symmetric structures were designed according to the structures described in Example 1.2 using anti-PD-L1 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 5-6. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 5-7.
TABLE-US-00052 TABLE 5-6 PD-L1 × 4-1BB bispecific antibody molecules of IgG- VH tetravalent symmetric structures VH_B position Struc- Bispecific PD-L1 4-1BB relative ture antibody antibody antibody to Linker Fc type No. molecules (IgG) (VH_B) IgG peptide (mutation) 5 PR003549 PR000265 PR001758 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A, P329G) 5 PR003550 PR000265 PR001760 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A, P329G) 5 PR003551 PR000265 PR001836 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A, P329G)
TABLE-US-00053 TABLE 5-7 Expression of PD-L1 × 4-1BB bispecific antibody molecule proteins of IgG-VH tetravalent symmetric structures Bispecific Yield (mg/L) Structure antibody Expression system after first SEC-HPLC No. molecules and volume purification purity (%) 5 PR003549 HEK293-F (30 ml) 24.51 98.31 5 PR003550 HEK293-F (30 ml) 42.16 95.41 5 PR003551 HEK293-F (30 ml) 2.28 99.39
Example 5.4.3. Sequences of PD-L1×4-1BB Bispecific Antibody Molecules and Control Molecules
[0639] The sequence numbers corresponding to the sequences of the PD-L1×4-1BB bispecific antibody molecules constructed in this example, the corresponding parent monoclonal antibody molecules such as the PD-L1 monoclonal antibody and the 4-1BB monoclonal antibody, and the control molecules are listed in Table 5-8, Table 5-9 and Table 5-10. The structure numbers in Table 5-10 correspond to those in Table 1-1 and
TABLE-US-00054 TABLE 5-8 Control molecules and parent monoclonal antibodies Antibody No. Antibody PR000265 Anti-PD-L1 91G3H5H3 (D54E), hIgG1 (N297A) PR000151 Anti-PD-L1 monoclonal antibody atezolizumab analog, hIgG1 (N297A) PR000448 Anti-4-1BB 79B10G8D4 (H: N52Q; L: F2I), hIgG4 (S228P) PR000197 Anti-4-1BB 79B10G8D4, hIgG4 (S228P) PR001758 Anti-4-1BB heavy-chain antibody 1016P0010B11, hIgG1 PR001760 Anti-4-1BB heavy-chain antibody 1016P0011G10, hIgG1 PR001836 Anti-4-1BB heavy-chain antibody 1016P0020G4, hIgG1 PR000628 Anti-4-1BB monoclonal antibody urelumab analog, hIgG4 (S228P) PR000483 Anti-4-1BB monoclonal antibody utomilumab analog, hIgG2 PR001289 PD-L1 × 4-1BB bispecific antibody molecule, with only one different polypeptide chain, the sequences of which are derived from the sequence of the 4-1BB × PD-L1 single- domain antibody disclosed in the patent WO2017/123650A2, hIgG1(LALA)
TABLE-US-00055 TABLE 5-8 Control molecules and parent monoclonal antibodies Antibody Light Heavy No. chain chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 PR000265 353 308 282 240 167 188 211 15 69 122 PR000151 349 302 284 235 169 190 213 16 64 124 PR000197 350 304 285 237 170 191 214 18 66 126 PR000448 355 311 289 242 170 191 214 18 71 126 PR001758 None 320 None 252 None None None 27 79 137 PR001760 None 321 None 253 None None None 28 80 138 PR001836 None 323 None 255 None None None 29 82 138 PR000628 358 314 292 246 175 195 219 18 73 131 PR000483 356 312 290 243 174 194 218 22 72 130 PR001289 None 494 None None None None None None None None
TABLE-US-00056 TABLE 5-10 Sequence numbers of PD-L1 × 4-1BB bispecific antibody molecules of this example Structure Antibody Polypeptide chain 1 Polypeptide chain 2 No. No. (short chain) (long chain) 5 PR003549 353 460 5 PR003550 353 461 5 PR003551 353 462 1 PR004270 371 486 2 PR007163 353 521 1 PR007164 371 522
TABLE-US-00057 TABLE 5-11 Sequence numbers of CDRs of antigen-binding domains of PD-L1 × 4-1BB bispecific antibody molecules Antigen binding Structure Antibody domain No. No. No. LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 1 PR004270, #1 167 188 211 15 69 122 PR007164 #2 None None None 28 80 138 2 PR007163 #1 167 188 211 15 69 122 #2 None None None 28 80 138 5 PR003549 #1 167 188 211 15 69 122 #2 None None None 27 79 137 5 PR003550 #1 167 188 211 15 69 122 #2 None None None 28 80 138 5 PR003551 #1 167 188 211 15 69 122 #2 None None None 29 82 138 FIT- PR000701 #1 167 188 211 15 69 122 Ig #2 170 191 214 18 66 126 FIT- PR003052 #1 169 190 213 16 64 124 Ig #2 170 191 214 18 71 126
Example 5.5. Binding to PD-L1
[0640] This example is intended to investigate the binding activity of the PD-L1×4-1BB bispecific antibody molecules to PD-L1.
Example 5.5.1. Binding to CHO-K1 Cells CHO-K1/hPDL1 Highly Expressing Human PD-L1
[0641] The binding ability of the antibody molecules to a CHO-K1 cell line CHO-K1/hPDL1 (GenScript Biotech, M00543) highly expressing human PD-L1 was tested by flow cytometry FACS. Specifically, CHO-K1/hPDL1 cells were digested and resuspended in a complete medium, with the cell density adjusted to 1×10.sup.6 cells/mL. Thereafter, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the serially diluted antibody molecules were added to the 96-well plate at 100 μL/well, and the mixtures were well mixed. The antibody molecules might serially diluted 3-fold from the highest final concentration 200 nM to obtain a total of 12 concentrations. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Goat human IgG (H+L) Alexa Fluor 488 conjugation, Thermo, #A11013, 1:1000 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0642] In this examples, the anti-PD-L1 monoclonal antibody PR000265 was used as a positive control molecule. It was also the parent monoclonal antibody of the PD-L1 end of the PD-L1×4-1BB bispecific antibody molecules. The results are shown in
[0643] As shown in
[0644] As shown in
[0645] As shown in
TABLE-US-00058 TABLE 5-12 Binding to CHO-K1/hPDL1 EC.sub.50 Maximum EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR003052 1.75 2006 PR004270 0.963 14716 PR007163 2.258 51309 PR000701 1.723 1714 PR000265 0.356 12960 PR007164 1.926 51400 PR003549 1.558 2224 PR000265 1.561 47006 PR003550 1.111 2254 PR003551 1.294 2149 PR000265 0.7807 2004 Experiment 1 Experiment 2 Experiment 3
Example 5.6. Binding to 4-1BB
[0646] This example is intended to investigate the binding activity of the PD-L1×4-1BB bispecific antibody molecules to 4-1BB.
[0647] The binding abilities of the antibody molecules to a CHO-K1 cell strain highly expressing human 4-1BB (CHO-K1/hu4-1BB, GenScript, M00538) and a CHO-K1 cell strain highly expressing cynomolgus monkey 4-1BB (CHO-K1/cyno4-1BB, GenScript, M00569) were determined by flow cytometry FACS. Specifically, the cells were digested and resuspended in a complete medium, with the cell density adjusted to 2×10.sup.6 cells/mL. Then, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well (2×10.sup.5 cells/well) and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the serially diluted antibody molecules were added to the 96-well plate at 100 μL/well, and the mixtures were well mixed. The antibody molecules might serially diluted 3-fold from the highest final concentration 200 nM to obtain a total of 12 concentrations. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Goat human IgG (H+L) Alexa Fluor 488 conjugation, Thermo, #A11013, 1:1000 dilution) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled FACS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0648] In this example, the anti-4-1BB monoclonal antibody Urelumab or Utomilumab was used as a positive control molecule.
Example 5.6.1. Binding to CHO-K1 Cells CHO-K1/Hu4-1BB Highly Expressing Human 4-1BB
[0649] The results are shown in
[0650] As shown in
[0651] As shown in
[0652] As shown in
TABLE-US-00059 TABLE 5-13 Binding to CHO-K1/hu 4-1BB Maxi- Maxi- Maxi- EC.sub.50 mum EC.sub.50 mum EC.sub.50 mum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR000197 0.673 15488 PR000448 0.947 8182 PR001838 0.8512 101674 Utomilumab 0.553 13223 Utomilumab 0.627 7747 PR004469 1.295 109216 Urelumab 0.6834 61805 Maxi- Maxi- EC.sub.50 mum EC.sub.50 mum Antibody (nM) MFI Antibody (nM) MFI PR001758 0.2122 1644 PR001836 0.2798 1833 PR001760 0.1981 1742 PR001838 0.2658 1832 PR001771 0.5323 1716 PR001840 0.4302 1789 Urelumab 0.2223 1381 Urelumab 0.2197 1278 Utomilumab 0.1297 1584 Utomilumab 0.1771 1643 Maxi- Maxi- Maxi- EC.sub.50 mum EC.sub.50 mum EC.sub.50 mum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR003052 36 1390 PR004270 1.576 46812 PR007163 3.762 65156 PR000701 10.15 1338 Urelumab 0.3469 21640 PR007164 3.17 63217 PR003549 1.898 1546 Utomilumab 0.4635 37245 PR001760 3.761 83588 PR003550 1.523 1567 PR003551 3.148 1570 Urelumab 1.014 570
Example 5.6.2. Binding to CHO-K1 Cell CHO-K1/Cyno 4-1BB Highly Expressing Cynomolgus Monkey 4-1BB
[0653] As shown in
TABLE-US-00060 TABLE 5-14 Binding to CHO-K1/cyno 4-1BB EC.sub.50 Maximum EC.sub.50 Maximum Antibody (nM) MFI Antibody (nM) MFI PR003549 1.859 4977 PR004270 1.554 6103 PR003550 1.321 5365 Utomilumab 0.3368 5271 Utomilumab 0.3469 5389 Urelumab No binding Urelumab No binding Experiment 1 Experiment 2
Example 5.7. T Cell Specific Activation Mediated by Target Cells Highly Expressing PD-L1
[0654] This example is intended to investigate the activity of the PD-L1×4-1BB bispecific antibody molecules to activate T cells by binding to 4-1BB in the presence of target cells. The target cells may be cells expressing PD-L1 at different levels, e.g., CHO-K1/hPDL1 (GenScript, M00543) highly expressing human PD-L1 or MDA-MB-231 (ATCC, HTB-26) highly expressing human PD-L1. The effector cells may be isolated human PBMCs or T cells.
[0655] Specifically, a 96-well plate (Corning, #3599) was coated first with 0.3 μg/mL anti-CD3 antibody OKT3 (Thermo, #16-0037-81) at 100 μL/well. Then, the density of human T cells (isolated from human PBMCs with a T cell isolation kit (Miltenyi, #130-096-535)) was adjusted to 2×10.sup.6 cells/mL, and the density of target cells was adjusted to 3×10.sup.5 cells/mL. The two cell suspensions were each seeded into a 96-well plate at 50 μL/well, with a final effector-to-target ratio of 20:3. Then, antibody molecules at different concentrations were added at 100 μL/well, wherein the antibody concentrations may be the final concentration of (10 nM, 1 nM) or 20 nM, or a total of 8 concentrations obtained by a 5-fold gradient dilution from the highest final concentration of 20 nM; and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) and hIgG4 iso (CrownBio, #C0045) were used as controls. The 96-well plate was incubated in an incubator at 37° C. with 5% CO.sub.2 for 3 days. Supernatants after 48 h and 72 h of culture were each collected. The IL-2 concentration in the 48-hour supernatant was determined using an IL-2 ELISA kit (Thermo, #88-7025-88), and the IFN-γ concentration in the 72-hour supernatant was determined using an IFN-γ ELISA kit (Thermo, #88-7316-77). The ELISA assay was performed by referring to the instructions of relevant kit. The data were processed and analyzed by plotting using a GraphPad Prism 8 software.
[0656] In this example, the anti-4-1BB monoclonal antibody Urelumab was used as a positive control molecule.
Example 5.7.1. CHO-K1/hPDL1-Mediated T Cell Specific Activation
[0657] As shown in
Example 5.7.2. MDA-MB-231-Mediated T Cell Specific Activation
[0658] As shown in
[0659] As shown in
TABLE-US-00061 TABLE 5-15 Levels of cytokines IFN-γ IL-2 Antibody EC.sub.50 (nM) Maximum EC.sub.50 (nM) Maximum PR003549 0.0695 16735 0.1203 1526 Urelumab 0.536 18131 2.944 1554
Example 5.8. Mixed Lymphocyte Reaction (MLR)
[0660] This example is intended to investigate the T cell activation effect of PD-L1×4-1BB bispecific antibody molecules by the mixed lymphocyte reaction (MLR).
[0661] In the first step, monocytes were isolated from PBMCs (MT-Bio) of a first donor using CD14 magnetic beads (Meltenyi, #130-050-201) according to the instructions of the relevant kit. Then, 50 ng/mL of recombinant human IL-4 (PeproTech, #200-02-A) and 100 ng/mL of recombinant human GM-CSF (PeproTech, #300-03-A) were added, and after 7 days of induction at 37° C., immature dendritic cells (iDC cells) were obtained. 1 μg/mL lipopolysaccharide (LPS, Sigma, #L6529) was then added, and after 24 h of induction, mature dendritic cells (mDC cells) were obtained. In the second step, T lymphocytes were isolated from PBMCs (MT-Bio) of a second donor using a T cell isolation kit (Meltenyi, #130-096-535). In the third step, the obtained T cells and mDC cells were seeded in a 96-well plate (T cells at 1×10.sup.5/well and mDC cells at 2×10.sup.4/well) at a ratio of 5:1. Then, antibody molecules at different concentrations were added at 50 μL/well, wherein the antibody concentration may be the final concentration of (10 nM, 1 nM), or a total of 8 concentrations obtained by a 3-fold gradient dilution from the highest final concentration of 50 nM; and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) or a blank well was used as a control. The cells were incubated in an incubator at 37° C. with 5% CO.sub.2 for 5 days. In the fourth step, supernatants on day 3 and on day 5 were each collected. The IL-2 concentration in the 3-day supernatant was determined using an IL-2 ELISA kit (Thermo, #88-7025-77), and the IFN-γ concentration in the 5-day supernatant was determined using an IFN-γ ELISA kit (Thermo, #88-7316-88). The ELISA assay was performed by referring to the instructions of relevant kit.
[0662] As shown in
[0663] As shown in
[0664] As shown in
Example 5.9. Pharmacokinetic Study
[0665] In this example, the pharmacokinetic properties of the PD-L1×4-1BB bispecific antibody molecule of a Fab-HCAb symmetric structure (PR004270) in mice were investigated.
[0666] The test was performed as follows: for each test antibody molecule, 6 female BALB/c mice weighing 18-22 g were selected and were administered with the bispecific antibody by intravenous injection at a dose of 5 mg/kg. The whole blood of 3 mice in one group was collected before the administration and 15 min, 24 h (1 day), 4 days and 10 days after the administration, and the whole blood of 3 mice in the other group was collected before the administration and 5 h, 2 days, 7 days and 14 days after the administration. The whole blood was left to stand for 30 min for coagulation and centrifuged, and the isolated serum sample was cryopreserved at −80° C. until it was taken for analysis. In this example, the drug concentration in the serum of mice was quantitatively determined by two ELISA methods. The ELISA method I, namely the Fc end detection (overall detection) method, was performed by capturing the antibody containing human Fc in the serum of mice using a goat anti-human Fc polyclonal antibody coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody; and the ELISA method II, namely the PD-L1-end detection (functional domain detection) method, was performed by capturing an antibody specifically recognizing PD-L1 in the serum of mice using a human PD-L1 protein coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody. Pharmacokinetic parameters were analyzed using Phoenix WinNonlin software version 8.2 by non-compartmental analysis (NCA).
[0667] As shown in
TABLE-US-00062 TABLE 5-16 Pharmacokinetics of PR004270 in BALB/c mice Bispecific antibody molecules PR004270 Animals (number) BALB/c mice (n = 6) Antibody dosage 5 mg/kg, I.V. PD-L1 end PK parameters Fc end detection detection T½ (hour) 465.6 256.5 Vd (mL/kg) 75.7 83.9 AUC (μg*hour/mL) 17,536 13,126 Cl (mL/hour/kg) 0.11 0.23 C0 (μg/mL) 119.7 81.7
Example 5.10. Summary
[0668] In this example, PD-L1×4-1BB bispecific antibody molecules of a variety of structures are constructed using the antigen-binding domain Fab of the anti-PD-L1 IgG antibody and the antigen-binding domain VH of the 4-1BB HCAb antibody. This shows the flexibility of constructing the molecular structure of bispecific antibodies based on HCAbs, and the T cell function-activating activity is regulated through different structure types, relative positions, binding valences and other parameters.
[0669] The activation of T cells by Urelumab is not target-specific, which is one of the causes for its clinical toxic and side effects. The T cell activation effect of PD-L1×4-1BB bispecific antibodies is specifically dependent on the expression of PD-L1. Crosslinking-dependent anti-4-1BB monoclonal antibodies are unable to directly activate T cells, but the PD-L1×4-1BB bispecific antibodies constructed using those anti-4-1BB monoclonal antibodies are able to specifically activate T cells in the presence of cells highly expressing PD-L1.
[0670] In one aspect, HCAb-based bispecific antibody structures, especially bispecific antibody molecules of IgG-VH tetravalent symmetric structures or bispecific antibody molecules of Fab-HCAb structures, retain the activity of the PD-L1 end and exhibit better T cell activation ability than the corresponding anti-PD-L1 parent monoclonal antibody in MLR experiments; in another aspect, the PD-L1 molecules highly expressed on target cells can mediate crosslinking and trimerization of 4-1BB to transmit T cell activation signals, and their T cell activation ability was even superior to that of Urelumab. Moreover, the bispecific antibody molecules of IgG-VH tetravalent symmetric structures or Fab-HCAb symmetric structures demonstrate better T cell activation ability than bispecific antibody molecules of FIT-Ig structures.
[0671] In conclusion, the PD-L1×4-1BB bispecific antibody molecules with good safety, outstanding functional activity and good molecular stability are constructed in this example.
Example 6. B7H4×4-1BB Bispecific Antibodies
Example 6.1. Background
[0672] B7-H4 (VTCN1, B7h.5, B7S1, B7×) is a transmembrane protein belonging to the B7/CD28 superfamily. The B7-H4 protein is expressed in some immune cells such as monocytes and dendritic cells, and is possibly involved in the negative regulation of immune response of T cells. In addition, B7H4 is highly expressed on the surface of tumor cells of breast cancer, ovarian cancer, endometrial cancer, non-small cell lung cancer, kidney cancer, etc., while it is not expressed or is very little expressed in most normal tissues. As an emerging target for these tumors, B7-H4 has received attention in recent years. Anti-B7-H4 antibodies can act on tumor cells through multiple mechanisms, but its development is mainly focused on monoclonal antibodies, and no bispecific antibody therapy is available at present.
[0673] 4-1BB (TNFRSF9, CD137) is a transmembrane protein belonging to the TNF receptor superfamily 4-1BB is a co-stimulatory molecule expressed on a variety of immune cells. It is a multifunctional modulator of immune activity. Its expression is induced in activated T cells, NK cells and other immune cells. 4-1BB activates T cells through trimerization mediated by its ligand 4-1BBL, promoting cell proliferation and cytokine release. Anti-4-1BB agonistic antibodies have the function of inhibiting tumors. The first 4-1BB antibodies to be subjected to clinical trials were Utomilumab from Pfizer and Urelumab (BMS-663513) from Bristol-Myers Squibb. The initial clinical results of Urelumab were published in 2008. Although encouraging efficacy was observed in some patients, the data showed urelumab to cause target and dose-associated hepatotoxicity. Moreover, two patients in the clinical trial died from hepatotoxicity, resulting in the discontinuation of related clinical trials. Utomilumab has better safety enabling the dose to be increased to 10 mg/kg, but still has a poor therapeutic effect.
[0674] In this example, we constructed bispecific antibodies targeting both B7H4 and 4-1BB to improve anti-tumor efficacy and safety through one or more mechanisms of action. Firstly, B7H4×4-1BB bispecific antibodies can activate T cells by relieving the negative regulatory signals of B7H4. Secondly, B7H4×4-1BB bispecific antibodies are enriched in tumor tissues with high B7H4 expression, and immune cells and tumor cells are combined together through the bispecific antibody molecules in a tumor microenvironment to promote the formation of immune synapses; meanwhile, the B7H4 molecules highly expressed on the surface of the tumor cells can promote the crosslinking of 4-1BB molecules on the surface of the T cell through bispecific antibody molecules, activate a downstream signaling pathway and provide a co-stimulation signal, thereby promoting the activation and proliferation of T cells and improving the anti-tumor activity. Thirdly, the anti-4-1BB agonistic antibodies used in this example have the function dependent on molecular crosslinking, and they can only mediate T cell activation using target cells in a tumor microenvironment to avoid the toxic and side effects caused by over-activation of T cells in normal tissues by monoclonal antibodies similar to Urelumab.
Example 6.2. Acquisition of Anti-B7H4 IgG Antibodies and Anti-4-1BB HCAb Antibodies
Example 6.2.1. Acquisition of Fully Human Anti-B7H4 H2L2 Antibodies
[0675] The Harbour H2L2 mouse (Harbour Antibodies BV) is a transgenic mouse carrying an immune repertoire of human immunoglobulins that produces antibodies with intact human antibody variable domains and rat constant domains.
[0676] Harbour H2L2 mice were subjected to multiple rounds of immunization with a soluble recombinant human B7H4-mFc fusion protein (Sino Biological Inc., #10738-H05H). When the titer of the B7H4-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken and fused with a myeloma cell line to obtain hybridoma cells. After multiple rounds of screening and cloning of the hybridoma cells, several monoclonal antibody molecules specifically recognizing B7H4 were identified. The monoclonal antibodies were further identified, and several candidate antibody molecules were preferentially selected according to parameters such as the binding ability to human B7H4, the binding ability to cynomolgus monkey B7H4, and the internalization ability of target cell receptors. The candidate antibody molecules were then subjected to sequence analysis and optimization to obtain several variant sequences. The VL and VH sequences of the antibody were fused to the corresponding human κ light chain constant region and IgG1 heavy chain constant region sequences and expressed to obtain recombinant fully human antibody molecules. The recombinant fully human anti-B7H4 IgG antibodies PR002408 and PR002410 are listed in Table 6-9.
Example 6.2.2. Acquisition of Fully Human Anti-4-1BB HCAb Antibodies
[0677] The fully human anti-4-1BB HCAb antibodies PR001758, PR001760, PR001771, PR001840 and PR004469 (Table 6-9) used in this example were derived from Harbour HCAb mice, and were found as described in Example 5.2.3.
[0678] The binding ability of the 4-1BB heavy chain antibodies to CHO-K1/hu 4-1BB cells (GenScript Biotech, M00538) was tested by flow cytometry FACS and the method described in Example 5.6. As shown in
Example 6.3. Construction of Bispecific Antibody Molecules Using Anti-B7H4 IgG Antibodies and Anti-4-1BB HCAb Antibodies
[0679] In this example, B7H4×4-1BB bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-B7H4 IgG antibody PR002408 or PR002410 and the antigen-binding domain VH of the anti-4-1BB HCAb antibody PR001758, PR001760, PR001771, PR001840 or PR004469.
[0680] In this and subsequent examples, the anti-B7H4 IgG monoclonal antibody PR002408 was used as a positive control molecule, and was also the parent monoclonal antibody of the B7H4 end of the B7H4×4-1BB bispecific antibody molecules.
[0681] In this and subsequent examples, the anti-4-1BB IgG monoclonal antibody urelumab was used as a positive control molecule.
Example 6.3.1. Construction of Molecules of Fab-HCAb Symmetric Structures
[0682] B7H4×4-1BB bispecific antibody molecules of Fab-HCAb symmetric structures were designed according to the structures described in Example 1.1 using anti-B7H4 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 6-1. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 6-2.
TABLE-US-00063 TABLE 6-1 B7H4 × 4-1BB bispecific antibody molecules of Fab-HCAb tetravalent symmetric structures First Second linker linker peptide peptide (be- (be- tween tween Struc- Bispecific B7H4 4-1BB Fab VH_B Fc type ture antibody antibody antibody and and (mu- No. molecules (IgG) (VH_B) VH_B) CH2) tation) 1 PR004279 PR002408 PR001760 H1_15 Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A) 1 PR005189 PR002408 PR001760 None Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A) 2 PR007165 PR002408 PR001760 None Human Human IgG1 IgG1 hinge (L234A, (C220S) L235A)
TABLE-US-00064 TABLE 6-2 Expression of B7H4 × 4-1BB bispecific antibody molecule proteins of Fab-HCAb tetravalent symmetric structures Plasmid Bispecific transfection ratio Yield (mg/L) Structure antibody Expression system (short chain:long after first SEC-HPLC No. molecules and volume chain) purification purity (%) 1 PR004279 HEK293-F (30 ml) 1:1 11.375 79.18
Example 6.3.2. Construction of Molecules of IgG-VH Tetravalent Symmetric Structure
[0683] B7H4×4-1BB bispecific antibody molecules of IgG-VH tetravalent symmetric structures were designed according to the structures described in Example 1.2 using anti-B7H4 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 6-3. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 6-4.
TABLE-US-00065 TABLE 6-3 B7H4 × 4-1BB bispecific antibody molecules of IgG-VH tetravalent symmetric structures VH_B Struc- Bispecific B7H4 4-1BB position Fc type ture antibody antibody antibody relative Linker (mu- No. molecules (IgG) (VH_B) to IgG peptide tation) 5 PR003334 PR002408 PR001758 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A) 5 PR003335 PR002408 PR001760 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A) 5 PR003338 PR002408 PR004469 C- H1_ Human terminus 15-RT IgG1 of heavy (L234A, chain L235A)
TABLE-US-00066 TABLE 6-4 B7H4 × 4-1BB bispecific antibody molecule proteins of IgG-VH tetravalent symmetric structures Ex- Plasmid pression transfection Yield SEC- Struc- Bispecific system ratio (short (mg/L) HPLC DSF ture antibody and chain:long after first purity Tm1 No. molecules volume chain) purification (%) (° C.) 5 PR003334 ExpiCHO 3:2 38.2 97.98 60.32 (200 ml) 5 PR003335 ExpiCHO 3:2 68.9 99.29 65.59 (200 ml) 5 PR003338 HEK293-F 3:2 74.6 98.02 62.17 (10 ml)
Example 6.3.3. Construction of Molecules of IgG-VH(2) Hexavalent Symmetric Structures
[0684] B7H4×4-1BB bispecific antibody molecules of IgG-VH(2) hexavalent symmetric structures were designed according to the structures described in Example 1.3 using anti-B7H4 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 6-5. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 6-6.
TABLE-US-00067 TABLE 6-5 B7H4 × 4-1BB bispecific antibody molecules of IgG-VH(2) hexavalent symmetric structures Second First linker linker peptide peptide (between Struc- Bispecific B7H4 4-1BB (between VH_B Fc type ture antibody antibody antibody Fc and and (mu- No. molecules (IgG) (VH_B) VH_B) VH_B) tation) 7 PR003487 PR002408 PR001760 H1_ None Human 15-RT IgG1 (L234A, L235A) 7 PR003488 PR002408 PR001760 H1_ GS_5 Human 15-RT IgG1 (L234A, L235A)
TABLE-US-00068 TABLE 6-6 Expression of B7H4x4-1BB bispecific antibody molecule proteins of IgG-VH(2) hexavalent symmetric structures Bispecific Expression Yield (mg/L) Structure antibody system after first SEC-HPLC No. molecules and volume purification purity (%) 7 PR003487 HEK293-F (30 ml) 19 84 7 PR003488 HEK293-F (30 ml) 17.39 85
Example 6.3.4. Construction of Molecules of Fab-Fc-VH(n) Asymmetric Structures
[0685] B7H4×4-1BB bispecific antibody molecules of Fab-Fc-VH(n, n={2,3}) asymmetric structures were designed according to the structures described in Example 1.6 and Example 1.9 using anti-B7H4 IgG antibodies and anti-4-1BB heavy chain antibodies, with the results summarized in Table 6-7. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 6-8. The mutation based on the “knob-into-hole” structure was used and the L234A and L235A double mutation was introduced in the Fc region of the molecules.
TABLE-US-00069 TABLE 6-7 B7H4 × 4-1BB bispecific antibody molecules of Fab-Fc-VH(n) asymmetric structures Number of repetition Bispecific B7H4 4-1BB Structure n for First Second Structure antibody antibody antibody of Fab VH_ linker linker No. molecules (Fab) (VH_B) end B peptide peptide 14 PR004160 PR002410 PR001760 Normal 2 GS_15 None 26 PR004161 PR002410 PR001760 Normal 3 GS_15 AS- GS_15 26 PR004181 PR002410 PR001771 Normal 3 GS_15 GS_15 26 PR004182 PR002410 PR001840 Normal 3 GS_15 GS_15
TABLE-US-00070 TABLE 6-8 Expression of B7H4x4-1BB bispecific antibody molecule proteins of Fab-Fc-VH(n) asymmetric structures Yield SEC- Struc- Bispecific Expression Plasmid (mg/L) HPLC ture antibody system transfection after first purity No. molecules and volume ratio purification (%) 14 PR004160 HEK293-F (30 ml) 1:1:1 29.36 89.41 26 PR004161 HEK293-F (30 ml) 1:1:1 31.62 85.47 26 PR004181 HEK293-F (30 ml) 1:1:1 87.25 87.19 26 PR004182 HEK293-F (30 ml) 1:1:1 24.75 79.14
Example 6.3.5. Sequences of B7H4×4-1BB Bispecific Antibody Molecules and Control Molecules
[0686] The sequence numbers corresponding to the sequences of the B7H4×4-1BB bispecific antibody molecules constructed in this example, the corresponding parent monoclonal antibody molecules such as the B7H4 monoclonal antibody and the 4-1BB monoclonal antibody, and the control molecules are listed in Table 6-9, Table 6-10 and Table 6-11. The structure numbers in Table 6-11 correspond to those in Table 1-1 and
TABLE-US-00071 TABLE 6-9 Control molecules and parent monoclonal antibodies Antibody No. Antibody PR002408 Anti-B7H4 monoclonal antibody 80C8-2E9 (H: G55A; L: N92Q), hIgG1 PR002410 Anti-B7H4 monoclonal antibody 1025_B-1H11 (L: C87Y), hIgG1 PR001758 Anti-4-1BB heavy-chain antibody 1016P0010B11, hIgG1 PR001760 Anti-4-1BB heavy-chain antibody 1016P0011G10, hIgG1 PR001771 Anti-4-1BB heavy-chain antibody 1016P0042C5, hIgG1 PR001840 Anti-4-1BB heavy-chain antibody 1016P0037D2, hIgG1 PR004469 Anti-4-1BB heavy-chain antibody PR001838_G53A, hIgG1 PR000628 Anti-4-1BB monoclonal antibody urelumab analog, hIgG4 (S228P)
TABLE-US-00072 TABLE 6-10 Sequence numbers of sequences and CDR sequences of control molecules and parent monoclonal antibodies Antibody Light Heavy No. chain chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 PR002408 360 326 298 261 180 191 225 32 87 143 PR002410 361 327 299 262 177 191 226 33 88 144 PR001758 None 320 None 252 None None None 27 79 137 PR001760 None 321 None 253 None None None 28 80 138 PR001771 None 322 None 254 None None None 28 81 139 PR001840 None 324 None 256 None None None 15 83 140 PR004469 None 329 None 264 None None None 28 89 145 PR000628 358 314 292 246 175 195 219 18 73 131
TABLE-US-00073 TABLE 6-11 Sequence numbers of B7H4x4-1BB bispecific antibody molecules of this example Structure Antibody Polypeptide chain 1 Polypeptide chain 2 No. No. (short chain) (long chain) 5 PR003334 360 455 5 PR003335 360 456 5 PR003338 360 457 7 PR003487 360 458 7 PR003488 360 459 1 PR004279 487 488 1 PR005189 487 520 2 PR007165 360 523 14 PR004160 361 481 26 PR004161 361 481 26 PR004181 361 481 26 PR004182 361 481
TABLE-US-00074 TABLE 6-12 Sequence numbers of CDRs of antigen-binding domains of B7H4 × 4-1BB bispecific antibody molecules Antigen- binding Structure Antibody domain No. No. No. LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 1 PR004279, #1 180 191 225 32 87 143 PR005189 #2 None None None 28 80 138 2 PR007165 #1 180 191 225 32 87 143 #2 None None None 28 80 138 5 PR003334 #1 180 191 225 32 87 143 #2 None None None 27 79 137 5 PR003335 #1 180 191 225 32 87 143 #2 None None None 28 80 138 5 PR003338 #1 180 191 225 32 87 143 #2 None None None 28 89 145 7 PR003487, #1 180 191 225 32 8' 143 PR003488 #2 None None None 28 80 138 14 PR004160 #1 177 191 226 33 88 144 #2 None None None 28 80 138 26 PR004161 #1 177 191 226 33 88 144 #2 None None None 28 80 138 26 PR004181 #1 177 191 226 33 88 144 #2 None None None 28 81 139 26 PR004182 #1 177 191 226 33 88 144 #2 None None None 15 83 140
Example 6.4. Binding to B7H4
[0687] This example is intended to investigate the binding activity of the B7H4×4-1BB bispecific antibody molecules to B7H4.
Example 6.4.1. Binding to SK-BR-3 Cells Highly Expressing Human B7H4
[0688] The binding ability of the antibodies to a tumor cell line SK-BR-3 (ATCC, HTB-30) highly expressing human B7H4 was tested by flow cytometry FACS. Specifically, SK-BR-3 cells were digested and resuspended in a complete medium, with the cell density adjusted to 2×10.sup.6 cells/mL. Then, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 50 μL/well. Then, antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution were added at 50 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 2 h away from light. Then, the cells in each well were then rinsed twice with 100 μL of pre-cooled PBS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Alexa Fluor 647-conjugated AffiniPure Goat Anti-Human IgG, Fcγ Fragment Specific, Jackson ImmunoResearch, #109-605-098, diluted in a 1:1000 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 100 μL of pre-cooled PBS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer (ACEA Biosciences Inc.), and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0689] As shown in
TABLE-US-00075 TABLE 6-13 Binding to SK-BR-3 Maxi- Maxi- Maxi- EC.sub.50 mum EC.sub.50 mum EC.sub.50 mum Antibody (nM) MFI Antibody (nM) MFI Antibody (nM) MFI PR003334 0.9685 254417 PR003335 2.725 127965 PR004279 0.6201 25718 PR003335 1.102 244159 PR003487 2.593 131617 PR003335 1.108 25113 PR003338 0.8207 241092 PR003488 2.626 132285 PR004181 9.254 41920 PR007165 3.462 37793 PR004160 11.33 32312 PR004182 2.616 43637 PR005189 3.173 37457 PR004161 23.44 41230 PR002408 2.853 36029
Example 6.5. Binding to 4-1BB
[0690] This example is intended to investigate the binding activity of the B7H4×4-1BB bispecific antibody molecules to 4-1BB.
Example 6.5.1. Binding to CHO-K1 Cells CHO-K1/Hu4-1BB Highly Expressing Human 4-1BB
[0691] The binding ability of the antibody molecules to a CHO-K1 cell line CHO-K1/hu 4-1BB (GenScript Biotech, M00538) highly expressing human 4-1BB was tested by flow cytometry FACS. Specifically, the cells were digested and resuspended in a complete medium, with the cell density adjusted to 2×10.sup.6 cells/mL. Then, the cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well (2×10.sup.5 cells/well) and centrifuged at 4° C. for 5 min, and the supernatant was discarded. Then, the antibody molecules at a total of 8 concentrations obtained by a 5-fold gradient dilution were added into a 96-well plate at 100 μL/well, and the mixture was mixed well. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled PBS buffer, and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Alexa Fluor® 488, Goat Anti-Human IgG, Fcγ fragment specific, Jackson ImmunoResearch, #109-545-098, diluted in a 1:1000 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 1 h away from light. Then, the cells in each well were then rinsed twice with 200 μL of pre-cooled PBS buffer and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, a pre-cooled FACS buffer (PBS buffer containing 0.5% BSA) was added at 200 μL/well to resuspend the cells. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0692] In this example, the anti-4-1BB monoclonal antibody Urelumab was used as a positive control molecule. The results are shown in
[0693] As shown in
TABLE-US-00076 TABLE 6-14 Binding to CHO-K1/hu 4-1BB Maximum Maximum Maximum Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI PR003334 0.4831 162519 PR003487 0.755 95740 PR004279 0.5035 104957 PR003335 0.7395 173076 PR003488 0.7735 98153 PR003335 1.349 91013 PR003338 0.6708 163354 Urelumab 0.7945 101473 Urelumab 0.4241 118060 PR007165 3.996 71246 PR004160 1.943 158311 PR004181 0.4487 69865 PR005189 4.255 92381 PR004161 1.266 126124 PR004182 0.6107 71139 PR001760 3.761 83588 Urelumab 1.506 88235 Urelumab 0.4488 63326
Example 6.6. T Cell Specific Activation Mediated by Target Cells Highly Expressing B7H4
[0694] This example is intended to investigate the activity of the B7H4×4-1BB bispecific antibody molecules to activate T cells by binding to 4-1BB in the presence of target cells. The target cells may be cells expressing B7H4 to different degrees, such as SK-BR-3 (ATCC, HTB-30) highly expressing B7H4 or JIMT-1 (DSMZ, ACC 589) not expressing B7H4. The effector cells may be isolated human PBMCs or T cells.
[0695] Specifically, anti-CD3 antibody OKT3 (Thermo, #16-0037-81) was firstly used for coating a 96-well plate (Corning, #3799). Then, the density of human T cells was adjusted to 3×10.sup.6 cells/mL, and the density of target cells was adjusted to 3×10.sup.5 cells/mL. The two cell suspensions were each seeded into a 96-well plate at 50 μL/well, with a final effector-to-target ratio of 10:1. Then, antibody molecules at different concentrations were added at 50 μL/well, wherein the concentrations are a total of 6 concentrations obtained by a 5-fold gradient dilution, and two duplicate wells were set for each concentration. hIgG1 iso (CrownBio, #C0001) and hIgG4 iso (CrownBio, #C0045) were used as controls. The 96-well plate was incubated in an incubator at 37° C. with 5% CO.sub.2 for 2 days. After the incubation was completed, 100 μL of the supernatant was taken and added into another 96-well plate (Corning, #3599), and the mixture was centrifuged at 500 g at 4° C. for 5 min 50 μL of the supernatant was taken for the measurement of the level of cytokines. The concentration of IL-2 in the supernatant was determined using an IL-2 ELISA kit (Thermo, #88-7025-88), and the concentration of IFN-γ in the supernatant was determined using an IFN-γ ELISA kit (Thermo, #88-7316-88). The ELISA assay was performed by referring to the instructions of relevant kit. The data were processed and analyzed by plotting using a GraphPad Prism 8 software.
[0696] In this example, the anti-4-1BB monoclonal antibody Urelumab was used as a positive control molecule.
Example 6.6.1. SK-BR-3-Mediated T Cell Specific Activation
[0697] As shown in
[0698] As shown in
[0699] As shown in
[0700] As shown in
[0701] As shown in
Example 6.6.2. Influence of the Expression of B7H4 on the T Cell Activation
[0702] As shown in
Example 6.7. Serum Stability
[0703] In this example, the stability of B7H4×4-1BB bispecific antibody molecules of IgG-VH symmetric structures (PR003334 and PR003335) in high concentrations of human sera was investigated. Specifically, the bispecific antibody molecules were diluted in a 3-fold gradient with 90% human serum at an initial concentration of 100 nM for a total of 8 concentration points. The samples at each concentration were divided into 6 aliquots, incubated at 37° C. for 0 day, 1 day, 2 days, 4 days, 7 days and 14 days, quickly frozen with liquid nitrogen, and stored at −40° C. Then, samples were collected after incubation in serum for different periods of time, and tested for the binding activity of the bispecific antibody molecules to SK-BR-3 cells and CHOK1/hu 4-1BB cells according to the methods described in Example 6.4.1 and Example 6.5.1, to investigate the change in the binding activity of the bispecific antibody molecules after incubation in serum for different periods of time.
[0704] The bispecific antibody molecules PR003334 (
TABLE-US-00077 TABLE 6-15 Binding activity of PR003334 to target cells after incubation in serum for different periods of time Binding to SK-BR-3 Binding to CHO-K1/hu 4-1BB Maximum Maximum PR003334 EC.sub.50 (nM) MFI EC.sub.50 (nM) MFI Day one 1.707 186430 0.841 360239 Day two 1.912 168183 0.769 397943 Day four 1.562 147497 0.607 374153 Day seven 2.004 160471 0.68 381546 Day 1.489 164959 0.851 383431 fourteen
TABLE-US-00078 TABLE 6-16 Binding activity of PR003335 to target cells after incubation in serum for different periods of time Binding to SK-BR-3 Binding to CHO-K1/hu 4-1BB PR003335 EC.sub.50 (nM) Maximum MFI EC.sub.50 (nM) Maximum MFI Day one 1.285 112575 0.470 432153 Day two 1.039 102557 0.457 396669 Day four 1.072 120474 0.624 389379 Day seven 1.41 93520 0.820 410577 Day 0.6645 78631 0.561 391641 fourteen
Example 6.8. Pharmacokinetic Study
[0705] In this example, the pharmacokinetic properties of the B7H4×4-1BB bispecific antibody molecules of IgG-VH symmetric structures (PR003334 and PR003335) in mice were investigated.
[0706] The test was performed as follows: for each test antibody molecule, 6 female C57BL/6 mice weighing 18-22 g were selected and were administered with the bispecific antibody by intravenous injection at a dose of 5 mg/kg. The whole blood of 3 mice in one group was collected before the administration and 15 min, 24 h (1 day), 4 days and 10 days after the administration, and the whole blood of 3 mice in the other group was collected before the administration and 5 h, 2 days, 7 days and 14 days after the administration. The whole blood was left to stand for 30 min for coagulation and centrifuged at 2,000 rpm at 4° C. for 5 min, and the isolated serum sample was cryopreserved at −80° C. until it was taken for analysis. In this example, the drug concentration in the serum of mice was quantitatively determined by two ELISA methods. The ELISA method I, namely the Fc end detection (overall detection) method, was performed by capturing the protein containing human Fc in the serum of mice using a goat anti-human Fc polyclonal antibody coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody; and the ELISA method II, namely the 4-1BB end detection (functional domain detection) method, was performed by capturing the antigen-binding protein specifically recognizing human 4-1BB in the serum of mice using a human 4-1BB protein (Acro biosystems, #41B-H5227) coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody. Pharmacokinetic parameters were analyzed using Phoenix WinNonlin software version 8.2 by non-compartmental analysis (NCA).
[0707] As shown in
TABLE-US-00079 TABLE 6-17 Pharmacokinetics of B7H4x4-1BB bispecific antibody molecules in C57BL/6 mice Bispecific antibody PR003334 PR003335 molecules Animals (number) C57BL/6 mice (n = 6) C57BL/6 mice (n = 6) Antibody dosage 5 mg/kg, I.V. 5 mg/kg, I.V. 4-1BB end Fc end 4-1BB end PK parameters Fc end detection detection detection detection T1/2 (hour) 193 218 336 295 Vd (mL/kg) 76 89 81 81 AUC (μg*hour/mL) 12,680 11,471 14,813 14,286 Cl (mL/hour/kg) 0.28 0.28 0.17 0.19 CO (μg/mL) 111 114 123 124
Example 6.9. Anti-Tumor Efficacy of Bispecific Antibody Molecules
[0708] In this example, the anti-tumor efficacy of B7H4×4-1BB bispecific antibody molecule PR003334 in a BALB/c-hCD137/CT26-hB7H4 mouse tumor model was investigated.
[0709] The test was performed as follows: female BALB/c-hCD137 mice (BALB/c mice introduced with exogenous human 4-1BB transgene, GemPharmatech) aged 6-8 weeks were selected, and were inoculated subcutaneously with CT26-hB7H4 tumor cells (mouse colon cancer cells CT26 introduced with exogenous human B7H4 transgene, Harbour BioMed) in the logarithmic growth phase on the right dorsal side of the experimental mice at a dose of 5×10.sup.5 cells/mouse. When the mean tumor volume reached 80 mm.sup.3, the mice were randomized into groups of 6. On the day of grouping, the drug diluted with PBS at a specific concentration was administered by intraperitoneal injection (i.p.), twice a week for a total of 6 doses (BIW×3), with PBS as a blank control group. Tumor volume and body weight of mice were measured on the day of the first administration and on days 4, 7, 11, 14 and 18 thereafter. The tumor volume was calculated as follows: tumor volume (mm.sup.3)=0.5×(long diameter of tumor×short diameter of tumor.sup.2). After the experiment was completed, tumor-bearing mice were euthanized, stripped of tumors and weighed. The tumor volume, body weight, and the like of mice in each group were calculated and the results were expressed as mean±standard error (Mean±SEM). The different treatment groups were separately compared with the control group for any significant difference by one-way analysis of variance (one-way ANOVA).
[0710] In this example, the anti-4-1BB monoclonal antibody Urelumab was used as a positive control molecule. The dose of 6 mpk (mg/kg) for the bispecific antibody molecule PR003334 and the dose of 5 mpk for Urelumab were equivalent doses at the same molar concentration (converted according to molecular weight); and the dose of 18 mpk for the bispecific antibody molecule PR003334 and the dose of 15 mpk for Urelumab were equivalent doses at the same molar concentration. An anti-mouse PD-1 antibody (Bio X Cell, clone RMP1-14, #BE0146) at a dose of 10 mpk was also used as a control molecule. PBS was used as a blank control group.
[0711] As shown in
Example 6.10. Determination of Stability and Physicochemical Properties of Bispecific Antibody Molecules by UNcle
[0712] In this example, the physicochemical properties such as molecular stability of the B7H4×4-1BB bispecific antibody molecules of IgG-VH symmetric structures (PR003334, PR003335, and PR003338) were determined by the method described in Example 2.5. As shown in Table 6-18, those bispecific antibody molecules had good stability.
TABLE-US-00080 TABLE 6-18 Determination parameters for bispecific antibody molecules in UNcle PR003334 PR003335 PR003338 Tm (° C.) 60.32 65.59 62.17 Tagg (° C.) at 266 nm 52.00 50.39 54.14 Tagg (° C.) at 473 nm 1 — — Initial SLS at 266 nm (counts × 104) 0.26 0.22 0.20 Max SLS at 266 nm (counts × 104) 1.00 0.40 0.34 Initial SLS at 473 nm (counts) <0 <0 <0 Max SLS at 473 nm (counts) <0 <0 <0 Initial diameter (nm) (25° C.) 16.22 16.38 11.74 Final diameter (nm) (95° C.) 23.85 17.51 16.52 Initial PDI 0.267 0.229 0.043 Final PDI 0.089 0.194 0.185
Example 6.11. Summary
[0713] In this example, B7H4×4-1BB bispecific antibody molecules of a variety of structures are constructed using the antigen-binding domain Fab of the anti-B7H4 IgG antibody and the antigen-binding domain VH of the anti-4-1BB HCAb antibody. This shows the flexibility of constructing the molecular structure of bispecific antibodies based on HCAbs, and the T cell function-activating activity is regulated through different structure types, relative positions, binding valences and other parameters.
[0714] The activation of T cells by Urelumab is not target-specific, which is one of the causes for its clinical toxic and side effects. However, the T cell activation effect of B7H4×4-1BB bispecific antibodies is specifically dependent on the expression of B7H4. In the presence of cells highly expressing B7H4, the bispecific antibodies are able to specifically activate T cells; whereas in the absence of B7H4 expression, the bispecific antibodies are unable to activate T cells. Therefore, the B7H4×4-1BB bispecific antibodies have better safety than 4-1BB monoclonal antibodies such as Urelumab.
[0715] In another aspect, the B7H4×4-1BB bispecific antibodies are able to mediate the crosslinking and trimerization of 4-1BB in the presence of B7H4 to transmit T cell activation signals, and their T cell activation ability is even better than that of Urelumab. In the Fab-HCAb and IgG-VH tetravalent symmetric structures, VH of the 4-1BB end is bivalent, and its T cell activation ability is slightly superior to that of Urelumab; in the IgG-VH-VH hexavalent symmetric structures, VH of the 4-1BB end is multivalent, and its T cell activation ability is significantly enhanced and is significantly superior to that of Urelumab.
[0716] In conclusion, the B7H4×4-1BB bispecific antibody molecules with good safety, outstanding functional activity and good molecular stability are constructed in this example.
Example 7. BCMA×CD3 Bispecific Antibodies
Example 7.1. Background
[0717] BCMA (B-cell maturation antigen, TNFRSF17, CD269) is a transmembrane protein belonging to the TNF receptor superfamily, and is involved in the maturation, growth and survival of B cells. BCMA has two main ligands: the high-affinity ligand APRIL (proliferation-inducing ligand) and the low-affinity ligand BAFF (B-cell activating factor). BCMA is a highly differentiated plasma cell-selective protein whose expression is restricted to the B cell lineage and is found predominantly on plasma cells and plasmablasts, and to some extent on memory B cells, but not on peripheral B cells. BCMA is expressed in malignant plasma cells of multiple myeloma (MM) patients and supports the growth and survival of multiple myeloma cells. Multiple myeloma is the second most common hematologic malignancy following non-Hodgkin's lymphoma, accounting for about 13% of hematological malignant tumors. As an emerging target for multiple myeloma, BCMA antibodies can act on MM cells through a variety of mechanisms.
[0718] Currently, the antibodies against BCMA with the fastest development in the clinical stage include CA8-J6M0 hIgG1 (hereinafter also referred to as positive control 1, and numbered PR000274 in the examples) from GlaxoSmithKline (GSK) Plcand an antibody-drug conjugate prepared on the basis of CA8-J6M0, belantamab mafodotin (CA8-J6M0-mcMMAF, GSK2857916). GSK2857916 has been used in multiple clinical trials to treat patients with different types of MM. Data from a small clinical study showed that objective response rate (ORR) reached 60% and median progression-free survival (PFS) was 12 months in 35 patients with relapsed or refractory MM who were over-pretreated (most patients had failed at least 5 therapies). In terms of safety, the most common side effects include corneal events, thrombocytopenia and anemia, which are all associated with cytotoxic agents conjugated to ADCs.
[0719] Currently, bispecific antibodies under clinical development include AMG-420 from Amgen, REGN-5458 from Regeneron, CC-93269 from Celgene, JNJ-64007957 from Johnson, and TNB383B from Abbvie. However, those bispecific antibodies also have problems such as short half-life and cytokine release syndrome (CRS). The bispecific antibody TNB383B was subjected to the clinical phase I in 2019 for MM, which is characterized by low cytokine release levels. However, TNB383B bind to neither BCMA nor CD3 of cynomolgus monkeys and cannot be evaluated toxicologically in cynomolgus monkeys.
[0720] Therefore, there is an urgent need to develop safer and more effective bispecific antibodies that target both human BCMA and CD3 and can bind to cynomolgus monkey BCMA and CD3.
Example 7.2. Discovery of Anti-BCMA HCAb Antibodies
[0721] The BCMA antigen can be used to immunize laboratory animals such as mice, rats, rabbits, sheep, and camels, to obtain an antibody molecule specifically binding to BCMA. Typically, the resulting antibody molecules are non-human antibodies. After obtaining non-human antibodies, these molecules need to be humanized by antibody engineering technology to reduce immunogenicity and improve druggability. However, the humanization of antibodies is complex in terms of the technology, and the humanized molecules tend to have reduced affinity for antigens. On the other hand, advances in transgenic technology have made it possible to develop genetically engineered mice that carry a human immunoglobulin immune repertoire and have the endogenous murine immune repertoire deleted. The antibodies produced by the transgenic mice have fully human sequences, so that further humanization is not needed, and the efficiency of developing therapeutic antibodies is greatly improved. The Harbour HCAb mouse (Harbour Antibodies BV, WO2010/109165A2) is a transgenic mice carrying an immune repertoire of human immunoglobulins, capable of producing novel “heavy chain”-only antibodies that are only half the size of conventional IgG antibodies. The antibodies produced have only human antibody “heavy chain” variable domains and mouse Fc constant domains. Due to the absence of light chain, this antibody almost solves the problems of light chain mismatch and heterodimerization, allowing the technical platform to develop products that are difficult to realize by the conventional antibody platform.
Example 7.2.1. Immunization of Mice with BCMA Antigen
[0722] Harbour HCAb mice were subjected to multiple rounds of immunization with a soluble recombinant human BCMA-ECD-Fc fusion protein. The antigenic protein was mixed with an immunoadjuvant to form an immunogenic reagent, which was then injected subcutaneously via the groin or intraperitoneally. In each round of immunization, each mouse received a total injection dose of 100 μL. In the first round of immunization, each mouse received an immunization with an immunogenic reagent prepared by mixing 50 μg of antigenic protein (recombinant human BCMA-ECD-Fc, ACRO Biosystems, #BC7-H82F0) with complete Freund's adjuvant (Sigma, #F5881) in a 1:1 volume ratio. In each subsequent round of booster immunization, each mouse received an immunization with an immunogenic reagent prepared by mixing 25 μg of antigenic protein with Sigma Adjuvant System adjuvant (Sigma, #S6322). The interval between rounds of booster immunization was at least two weeks. In general, there are no more than five rounds of booster immunizations. The immunization was performed at days 0, 14, 28, 42, 56 and 70; and the antibody titer in serum of mice was measured at days 49 and 77. The last round of booster immunization was performed at a dose of 25 μg of antigenic protein per mouse 5 days before the isolation of HCAb mouse splenic B cells.
Example 7.2.2. Acquisition of HCAb Monoclonal Antibodies and Antibody Sequences
[0723] When the titer of the BCMA-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken, from which B cells were isolated, and the CD138-positive plasma cells and BCMA antigen-positive B cell populations were sorted using a BD FACSAria™ III cell sorter. RNA was extracted and reversely transcribed into cDNA, and human VH gene was amplified by PCR. The amplified VH gene fragment was constructed into a mammalian cell expression plasmid pCAG vector encoding the sequence of the heavy chain Fc domain of the human IgG1 antibody. Mammalian host cells (such as human embryonic kidney cell HEK293) were transfected with the plasmid for expression, and the expressed HCAb antibody supernatant was screened with recombinant human BCMA-Fc, Avitag recombinant protein (ACRO Biosystems, #BC7-H82F0) through Mirrorball (SPT Labtech, Mirrorball® fluorescence cytometer). The obtained positive monoclonal antibody supernatant was further identified by flow cytometry FACS. The binding ability of the antibody supernatant to cells such as an HEK293T cell line HEK293T/hBCMA (KYinno, KC-0233) highly expressing human BCMA, an HEK293T cell line HEK293T/cyno BCMA (KYinno, KC-0979) highly expressing cynomolgus monkey BCMA, and a cell line NCI-H929 (ATCC, CRL-9068) highly expressing human BCMA was tested by FACS. Four positive monoclonal antibodies were obtained by multiple rounds of screening. The nucleotide sequences encoding the variable domains of the antibody molecules and the corresponding amino acid sequences were obtained through conventional sequencing means. In this example, the sequences of the variable domains of the anti-BCMA monoclonal antibody molecules obtained from immunized Harbour HCAb mice were human antibody sequences.
Example 7.2.3. Preparation of Fully Human Recombinant Anti-BCMA Antibodies
[0724] Purified recombinant anti-BCMA heavy chain antibodies were prepared according to the method described in Example 2.2 using plasmids encoding HCAb antibodies by conventional recombinant protein expression and purification techniques.
[0725] The sequence numbers (SEQ ID NOs) corresponding to the amino acid sequence of the heavy chain variable domain, the amino acid sequences of the full-length heavy chain, and the amino acid sequences of CDRs defined according to the Chothia scheme of the anti-BCMA HCAb antibodies in this example are listed in Table 7-1. The sequence numbers (SEQ ID NOs) corresponding to the light and heavy chain sequences of the positive control 1, CA8-J6M0 (antibody No. PR000274) are listed in Table 7-2.
TABLE-US-00081 TABLE 7-1 Sequence numbers of anti-BCMA HCAb antibodies Heavy Clone No. Antibody No. chain VH HCDR1 HCDR2 HCDR3 1005P10H8 PR000940 316 248 15 75 133 1005P16A10 PR000943 317 249 24 76 134 1005P36F3 PR001035 318 250 25 77 135 1005P63B7 PR001046 319 251 26 78 136
TABLE-US-00082 TABLE 7-2 Sequence number of a control anti-BCMA antibody Antibodies alias Antibody No. Heavy chain Light chain Positive control 1 PR000274 309 354
Example 7.3. Binding of HCAb Antibodies to BCMA
[0726] This example is intended to investigate the binding activity of anti-BCMA HCAb antibodies to human and cynomolgus monkey BCMAs. The binding ability of the recombinant anti-BCMA antibodies to cells such as an HEK293T cell line HEK293T/hBCMA (KYinno, KC-0233) highly expressing human BCMA, an HEK293T cell line HEK293T/cyno BCMA (KYinno, KC-0979) highly expressing cynomolgus monkey BCMA, and a cell line NCI-H929 (ATCC, CRL-9068) highly expressing human BCMA was tested by flow cytometry FACS. Specifically, HEK293T/hBCMA cells and HEK293T/cyno BCMA cells were digested and resuspended in a DMEM complete medium. In addition, NCI-H929 cell suspension was collected. The density of each of the three cells was adjusted to 1×10.sup.6 cells/mL. The cells were seeded in a 96-well V-bottom plate (Corning, #3894) at 100 μL/well, followed by the addition of test antibodies diluted in a 3-fold gradient at a concentration that was 2 times the final concentration, each at 100 μL/well. The cells were incubated at 4° C. for 1 h away from light. Thereafter, the cells in each well were rinsed twice with 100 μL of pre-cooled PBS, and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Alexa Fluor 488-conjugated AffiniPure Goat Anti-Human IgG, Fcγ Fragment Specific, Jackson, #109-545-06, diluted in a 1:500 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 30 min away from light. The cells in each well were rinsed twice with 100 μL of pre-cooled PBS, and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, the cells in each well were resuspended in 200 μL of pre-cooled PBS. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0727] In this example, the anti-BCMA monoclonal antibody PR000274 was used as a positive control 1 molecule.
Example 7.3.1. Binding to HEK293T/hBCMA Cells Highly Expressing Human BCMA
[0728] As shown in
TABLE-US-00083 TABLE 7-3 Binding to HEK293T/hBCMA Maximum Antibody EC.sub.50 (nM) MFI PR000943 0.1535 69991 PR001035 0.3356 39840 PR001046 0.2129 63382 Positive 4.076 86498 control 1
Example 7.3.2. Binding to NCI-H929 Cells Highly Expressing Human BCMA
[0729] As shown in
TABLE-US-00084 TABLE 7-4 Binding to NCI-H929 Maximum Antibody EC.sub.50 (nM) MFI PR000940 1.847 90962 PR000943 4.8 166453 PR001035 1.193 112747 PR001046 1.535 132791 Positive 10.75 124959 control 1
Example 7.3.3. Binding to HEK293T/Cyno BCMA Cells Highly Expressing Cynomolgus Monkey BCMA
[0730] As shown in
TABLE-US-00085 TABLE 7-5 Binding to HEK293T/cyno BCMA Maximum Antibody EC.sub.50 (nM) MFI PR000943 0.3293 63990 PR001035 n.d. 10848 PR001046 0.5641 67701 Positive 4.564 116307 control 1
Example 7.4. Killing of Target Cells by Internalization of HCAb Antibodies
[0731] This example is intended to investigate the killing of cells expressing human BCMA mediated by internalization of anti-human BCMA HCAb antibodies. Specifically, an HEK293T cell line HEK293T/hBCMA (KYinno, KC-0233) highly expressing human BCMA was digested, and the cells were resuspended in a DMEM complete medium, counted and inoculated to a black-wall and transparent-bottom 96-well plate (Perkin Elmer, #6005225) at 5000 or 10000 cells/well. The recombinant antibody was serially diluted to 9 different concentrations and added, with the final concentration starting at 100 nM. a-hFc-MMAF (Moradec, #AH-102-AF) was added to make a final concentration of 1 μg/mL. The plate was incubated at 37° C., 5% CO.sub.2 for 72 h, and the cells were lysed with a CTG kit (Promega, #G7573). The luminescence was detected using an Enspire™ multi-functional microplate reader (PerkinElmer, Inc.). The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values, maximum killing rate and other parameters were obtained through four-parameter nonlinear fitting.
[0732] As shown in
TABLE-US-00086 TABLE 7-6 Target cell killing mediated by antibody internalization Maximum Antibody EC.sub.50 (nM) killing rate (% ) PR000943 0.4917 78.72 PR001046 0.5711 71.20 Positive 2.180 77.19 control 1
Example 7.5. Binding Affinity for BCMA Determined by a BLI Method
[0733] In this example, the binding kinetics between the anti-BCMA antibody and the BCMA antigenic protein were analyzed by the Biolayer Interferometry (BLI) technique using an Octet Red96e molecular interaction analyzer (ForteBio, Octet Red96e). In this example, the BCMA protein was biotinylated human BCMA-Fc, Avitag recombinant protein (ACRO Biosystems, #BC7-H82F0), and the assay buffer was 1× kinetics buffer (diluted from 10×kinetics buffer (ForteBio, #18-1105)).
[0734] When the affinity between the antigen and the antibody (at multiple concentrations) was determined, the rotation speed of sensor was set at 1000 rpm/min. Two columns of SA sensors (8 sensors in each column; with the sensors in the first column referred to as the reference SA sensor and the sensors in the second column referred to as the test SA sensor) were firstly equilibrated in the assay buffer for 10 min. Then, the biotinylated human BCMA-Fc, Avitag recombinant protein was captured by test SA sensors with a capture height of 0.9-1.1 nm, and the reference SA sensors were immersed in the buffer for 30 s. Then, the SA sensors were equilibrated in the assay buffer for 2 min. The two columns of SA sensors were then associated with the anti-BCMA antibody diluted in a gradient (e.g., the antibody concentration may be 6 concentrations obtained by a two-fold gradient dilution from 50 nM, and 0 nM) for 5 min, and then dissociated for 10 min.
[0735] When data analysis was performed using Octet Data Analysis software (Fortebio, version 11.0), the reference signals were subtracted by a double reference mode; the data were fitted by a “1:1 Global fitting” method, and the kinetic parameters of the binding of the antigen to the antibody were calculated to obtain kon (1/Ms) values, kdis (1/s) values and KD (M) values.
[0736] As shown in
TABLE-US-00087 TABLE 7-7 Binding affinity of anti-BCMA HCAb antibodies for human BCMA protein Antibody No. KD (M) kon (1/Ms) kdis (1/s) Full R{circumflex over ( )}2 PR000940 1.52E−10 4.01E+05 6.09E−05 0.995 PR000943 1.62E−10 1.19E+05 1.93E−05 0.9986 PR001035 2.76E−10 3.25E+05 8.98E−05 0.9926 PR001046 2.53E−11 4.23E+05 1.07E−05 0.9983
Example 7.6. Optimization of HCAb Antibody Sequences to Improve Binding Affinity for BCMA
[0737] In this example, the binding affinity of the HCAb antibody PR001046 for BCMA was improved by an antibody engineering method.
Example 7.6.1. Acquisition of Variants of PR001046
[0738] Mutants with improved binding affinity for BCMA were obtained by two rounds of site-directed mutagenesis of the CDR regions of the variable region VH of the HCAb antibody PR001046.
[0739] In the first round, 35 sites in the three CDR regions (specified by the Kabat CDR scheme) of PR001046 VH were scanned site-by-site for amino acids to create single-site saturation mutagenesis libraries for 35 different sites. The 35 saturation mutagenesis libraries were screened by BCMA binding ELISA, positive clones with a signal of 2-fold over PR001046 VH were picked out for sequencing and further tested for their binding ability to BCMA by BCMA (at multiple concentrations obtained by a gradient dilution) combined with ELISA. Several mutation hot sites were preferentially selected.
[0740] In the second round, mutation hot sites preferentially selected in the first round were randomly combined to establish a library containing all mutation combinations. The combination library was then screened. Positive clones were subjected to sequencing and sequence analysis, and further tested for their binding ability to BCMA. Several mutants were selected.
[0741] The variant molecules of PR001046 VH were represented by the corresponding clone numbers, e.g., PR001046-R1-12G7, PR001046-R2-7E7 and the like. The VH regions of the variant molecules were constructed into a prokaryotic expression vector with Flag and His tags, and then the variant molecules were prepared by the conventional recombinant protein expression and purification techniques, with the corresponding sequence numbers listed in Table 7-8. Finally, the binding ability of the recombinant mutant molecules was determined by FACS, BLI and other methods.
TABLE-US-00088 TABLE 7-8 Sequence numbers of PR001046-derived variant molecules Variant clone Antibody Heavy No. No. chain VH HCDR1 HCDR2 HCDR3 PR001046 319 251 26 78 136 1046-R1-12G7 PR004559 330 265 26 90 136 1046-R2-10F1 PR004560 331 266 34 78 146 1046-R2-10H1 PR004561 332 267 35 78 147 1046-R2-10H5 PR004562 333 268 35 90 147 1046-R2-1A1 PR004563 334 269 36 90 146 1046-R2-2D4 PR004564 335 270 35 76 147 1046-R2-2G4 PR004565 336 271 34 78 148 1046-R2-4G10 PR004566 337 272 35 76 136 1046-R2-5E1 PR004567 338 273 35 90 146 1046-R2-5H1 PR004568 339 274 34 76 136 1046-R2-5H2 PR004569 340 275 35 76 146 1046-R2-6D6 PR004570 341 276 34 76 146 1046-R2-6F1 PR004571 342 277 35 90 148 1046-R2-7E7 PR004572 343 278 35 90 136 1046-R2-8B1 PR004573 344 279 35 90 136 1046-R2-9E5 PR004574 345 280 34 76 146
Example 7.6.2. Analysis of Dissociation Rate Order of Variant Molecules Binding to BCMA Protein by the BLI Method
[0742] The binding ability of PR001046 VH-derived single-domain variant molecules to BCMA was determined by the BLI technique by the method described in Example 7.5. In this example, the supernatant containing PR001046 VH-derived variant molecules was directly used, and the binding kinetics between the variant molecules and biotinylated human BCMA-Fc, Avitag recombinant protein were analyzed using an Octet Red96e molecular interaction analyzer. The variant molecules were ranked by the dissociation rate in the binding kinetics, and those with slower dissociation rate (stronger affinity) were selected. In this example, only the dissociation rate in the binding kinetics of each variant molecule to BCMA was analyzed and its relative value (Kdis Fold) to the original molecule (PR001046 VH) was calculated; a “Kdis Fold” of less than 1 indicates that the variant molecule has a slower dissociation rate than the original molecule.
[0743] In this example, multi-concentration binding kinetics analysis was not used for calculating the antigen-antibody binding affinity, and gradient dilution of the antibody to be analyzed was not needed, therefore, only one SA sensor was needed for each antibody, allowing multiple samples to be analyzed in each analysis cycle, thereby increasing the analysis throughput. By this method, the dissociation rate analysis can be performed on supernatant samples of a large number of variant molecules, and the molecules with superior dissociation rate can be selected.
[0744] As shown in Table 7-9, 16 PR001046 VH-derived variant molecules showed a slower dissociation rate (i.e., stronger affinity for BCMA) than the original molecule.
TABLE-US-00089 TABLE 7-9 Dissociation rate Kdis of PR001046-derived variant molecules binding to BCMA protein Antibody Conc. Kdis Kdis Variant clone No. (nM) Response (1/s) fold PR001046 100 0.2606 6.96E−04 1.00 1046-R1-12G7 PR004559 100 0.2614 3.79E−04 0.54 1046-R2-10F1 PR004560 100 0.5732 3.01E−04 0.43 1046-R2-10H1 PR004561 100 0.2694 3.00E−04 0.43 1046-R2-10H5 PR004562 100 0.5352 2.17E−04 0.31 1046-R2-1A1 PR004563 100 0.4933 2.59E−04 0.37 1046-R2-2D4 PR004564 100 0.5701 2.28E−04 0.33 1046-R2-2G4 PR004565 100 0.5572 2.36E−04 0.34 1046-R2-4G10 PR004566 100 0.4245 2.86E−04 0.41 1046-R2-5E1 PR004567 100 0.5781 2.01E−04 0.29 1046-R2-5H1 PR004568 100 0.7325 2.30E−04 0.33 1046-R2-5H2 PR004569 100 0.7303 2.54E−04 0.36 1046-R2-6D6 PR004570 100 0.4373 2.34E−04 0.34 1046-R2-6F1 PR004571 100 0.7035 2.19E−04 0.31 1046-R2-7E7 PR004572 100 0.2896 2.36E−04 0.34 1046-R2-8B1 PR004573 100 0.2680 2.82E−04 0.41 1046-R2-9E5 PR004574 100 0.2901 3.14E−04 0.45
Example 7.6.3. Binding of Variant Molecules to NCI-H929 Cells Highly Expressing Human BCMA
[0745] The binding ability of PR001046 VH-derived single-domain variant molecules to NCI-H929 cells highly expressing human BCMA was determined by the method described in Example 7.3. It is specifically noted that the recombinant variant molecules are VH single-domain antibody molecules with a Flag tag, and a fluorescent secondary antibody against the tag is required in the FACS assay.
[0746] As shown in
TABLE-US-00090 TABLE 7-10 Binding to NCI-H929 Antibody EC.sub.50 Maximum No. Variant clone (nM) MFI PR001046 n.d. 764 PR004559 1046-R1-12G7 22.35 1189 PR004560 1046-R2-10F1 3.75 1305 PR004561 1046-R2-10H1 4.38 1242 PR004562 1046-R2-10H5 1.24 1560 PR004563 1046-R2-1A1 7.96 1260 PR004564 1046-R2-2D4 1.34 1530 PR004565 1046-R2-2G4 2.42 1428 PR004566 1046-R2-4G10 3.17 1399 PR004567 1046-R2-5E1 1.72 1436 PR004568 1046-R2-5H1 2.85 1444 PR004569 1046-R2-5H2 5.87 1416 PR004570 1046-R2-6D6 2.15 1355 PR004571 1046-R2-6F1 2.86 1382 PR004572 1046-R2-7E7 0.54 1496 PR004573 1046-R2-8B1 1.72 1232 PR004574 1046-R2-9E5 2.90 1299
Example 7.7. Discovery of Anti-CD3 IgG Antibodies
[0747] The anti-CD3 antibody is an important component in the construction of T-Cell engager bispecific antibodies. In this example, the discovery and preparation of anti-CD3 antibodies by different methods were introduced.
Example 7.7.1. Discovery of Fully Human CD3 Antibodies
[0748] The Harbour H2L2 mouse (Harbour Antibodies BV) is a transgenic mouse carrying an immune repertoire of human immunoglobulins that produces antibodies with intact human antibody variable domains and rat constant domains. Harbour H2L2 mice were subjected to multiple rounds of immunization with a CD3 antigen. The antigen may be a recombinant human CD3 fusion protein, or a short peptide containing the first 27 amino acid residues at the N terminus of human CD3E, or a human T cell. When the titer of the CD3-specific antibody in the serum of mice was detected to reach a certain level, spleen cells of the mice were taken, from which B cells were isolated. Then, RNA was extracted and cDNA was prepared by RT-PCR. VH and Vκ fragments were amplified by PCR using cDNA as a template, and scFv fragments were prepared by overlap PCR and ligated to a pre-linearized vector pHBM-scFv-ST. The ligation product obtained were transformed into MC1061F′ electroporation competent cells (Lucigen, #60512-1), and a phage library was prepared. Multiple rounds of biopanning were performed with biotinylated antigenic protein, and screening was performed with CHO-K1 cells CHO-K1/hCD3 (Harbour BioMed) highly expressing a human CD3/TCR complex. Positive clones were identified and sequenced. Single-chain variable region fusion proteins (scFv-Fc structure) binding to CD3 obtained by screening by the phage display technique are listed in Table 7-11.
TABLE-US-00091 TABLE 7-11 Sequence numbers of fully human anti-human CD3 antibodies Antibody Polypeptide Clone No. No. chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 M15-C10 PR002161 490 294 258 177 191 221 15 84 141 M15-H2 PR002163 491 295 259 178 197 222 31 85 142 M23-F11 PR002337 492 296 260 177 191 223 31 86 141 M27-B11 PR002340 493 297 259 179 198 224 31 85 142
Example 7.7.2. Humanization of CD3 Antibodies
[0749] SP34 is a mouse-derived anti-human CD3 antibody and has a function of activating T cells. SP34 is one of the very few antibodies that can bind to multiple primate CD3 antibodies (e.g., human and cynomolgus monkey CD3 antibodies) (see Salmeron, A. et al., J Immunol 147 (1991) 3047-3052; Conrad M. L., et al., Cytometry A 71 (2007) 925-933). The variable region sequences VH and VL are derived from WO2016071004A1.
[0750] In this example, the sequences of the variable regions of the mouse antibody SP34 were humanized by the method of “CDR grafting”. Specifically, the CDRs of the VH of SP34 were grafted to the framework region of the VH of a human antibody, and the CDRs of the VL of SP34 were grafted to the framework region of the VL of a human antibody. The sequences of the framework regions of the VH or VL of a human antibody may be derived from human germline gene sequences or from antibody sequences following V(D)J rearrangement or from consensus sequences of specific VH or VL gene family of a human antibody. In this example, the sequences of the framework regions provided by the human germline gene sequences were used as a humanization template sequence. Specifically, the sequences of the framework regions FR1, FR2, and FR3 were provided by the human germline V gene segment and the sequences of the framework region FR4 was provided by the human germline J gene segment. Finally, humanized variable region (VH or VL) sequences were constructed in the arrangement of (human) FR1-(mouse) CDR1-(human) FR2-(mouse) CDR2-(human) FR3-(mouse) CDR3-(human) FR4.
[0751] In this example, the sequence of the human germline V gene segment IGHV3-73*01 or the human germline V gene segment IGHV3-23*01 in combination with the human germline J gene segment IGHJ1*01 was used as a humanization template to provide the sequences of the framework regions. Moreover, amino acid mutations were introduced in one or more of positions 30, 73, 76, 78, 93 and 94 (according to the Chothia numbering scheme) to obtain a plurality of different VH variant sequences. In this example, the sequence of the human germline V gene segment IGLV7-46*02 in combination with the human germline J gene segment IGLJ2*01 or the sequence of the human germline V gene segment IGKV1-39*01 in combination with the human germline J gene segment IGKJ4*01 was also used as a humanization template to provide the framework region sequences. Moreover, amino acid mutations were introduced in zero or one or more of positions 2, 36, 46, 49, 66, 69, 71 and 87 (according to the Chothia numbering scheme) to obtain a plurality of different VL variant sequences.
[0752] The VH variant sequences and VL variant sequences derived from SP34 were combined in pairs, and recombinant antibodies were prepared by the method described in Example 2.2. Recombinant antibodies and corresponding sequence numbers of SP34 and its derived variants are listed in Table 7-12 and Table 7-13.
TABLE-US-00092 TABLE 7-12 SP34-derived humanized recombinant antibodies Antibody No. Variable region variants Fc type (mutation) PR000260 Initial sequences of SP34 Human IgG1 (LALA) mouse antibody PR000511 VH: VH3231; VL: VL7461 Human IgG1 (LALA) PR001848 VH: VH3232; VL: VL7461 Human IgG1 (AAG) PR003886 VH: VH3730_N30S; Human IgG1 (LALA) VL: VL7461 PR004616 VH: VH3233; VL: VL7461 Human IgG1 (LALA) PR000510 VH: VH3731; VL: VL7461, Human IgG1 (LALA) constructed as scFv (AAG: L234A, L235A, P329G; LALA: L234A, L235A.)
TABLE-US-00093 TABLE 7-13 Sequence numbers of sequences and CDR sequences of SP34-derived humanized recombinant antibodies Antibody Light Heavy No. chain chain VL VH LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 PR000260 352 307 287 239 172 192 216 20 68 128 PR000511 357 313 291 245 172 192 216 20 68 128 PR001848 357 325 291 257 172 192 216 30 68 128 PR003886 357 328 291 263 172 192 216 30 68 128 PR004616 357 346 291 281 172 192 216 30 68 128 PR000510 None 489 291 244 172 192 216 20 68 128
Example 7.7.3. Binding of CD3 Antibodies to T Cells
[0753] The binding ability of the CD3 antibodies to human T cells was tested by flow cytometry FACS and the method described in Example 7.10. As shown in
Example 7.8. Construction of Bispecific Antibody Molecules Using Anti-CD3 IgG Antibodies and Anti-BCMA HCAb Antibodies
[0754] In this example, BCMA×CD3 bispecific antibody molecules of a variety of structures were constructed using the antigen-binding domain Fab of the anti-CD3 IgG antibody and the antigen-binding domain VH of the anti-BCMA HCAb antibody. The sequence of the antigen-binding domain Fab of the anti-CD3 antibodies was derived from the sequences described in Table 7-11 and Table 7-13; and the sequence of the antigen-binding domain VH of the anti-BCMA antibodies was derived from the sequences described in Table 7-1 and Table 7-8.
[0755] In this and subsequent examples, the control molecules include: anti-BCMA monoclonal antibody CA8-J6M0 (antibody No. PR000274, sequence source patent U.S. Pat. No. 9,273,141B2) used as the positive control 1 molecule; the BCMA×CD3 bispecific antibody molecule (antibody No. PR002199, sequence source patent WO2019133761A1) used as the positive control 2 molecule; the BCMA×CD3 bispecific antibody (antibody No. PR003106, sequence source patent WO2017134134A1) used as the positive control 3 molecule; and the hIgG1 chimeric antibody derived from the anti-CD3 monoclonal antibody SP34 (antibody No. PR000260, sequence source patent WO2016071004A1). The sequences of the control molecules are shown in Table 7-19.
Example 7.8.1. Construction of Molecules of Fab-Fc-VH(n) Asymmetric Structures
[0756] BCMA×CD3 bispecific antibody molecules of Fab-Fc-VH(n, n={1,2}) asymmetric structures were designed according to the structures described in Example 1.5 and Example 1.6 using anti-CD3 IgG antibodies and anti-BCMA heavy chain antibodies, with the results summarized in Table 7-14; and molecules of trivalent asymmetric structures containing two different anti-BCMA VH domain sequences were designed according to the structures described in Example 1.6.2, with the results summarized in Table 7-15. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 7-16.
TABLE-US-00094 TABLE 7-14 BCMA×CD3 bispecific antibody molecules of Fab-Fc-VH(n) asymmetric structures Bispecific CD3 BCMA Number of Fc type of Fab Fc type of Structure antibody Antibody antibody Structure repetition n Linker end VH_B end No. molecules (Fab) (VH_B) of Fab end for VH_B peptide (mutation) (mutation) 11 PR001987 PR000511 PR000940 Normal 1 None Human IgG1 Human IgG1 (knob, AAG) (hole, AAG) 11 PR001988 PR000511 PR000943 Normal 1 None Human IgG1 Human IgG1 (knob, AAG) (hole, AAG) 11 PR001989 PR000511 PR001035 Normal 1 None Human IgG1 Human IgG1 (knob, AAG) (hole, AAG) 1 PR001990 PR000511 PR001046 Normal 1 None Human IgG1 Human IgG1 (knob, AAG) (hole, AAG) 12 PR001991 PR000511 PR000940 cross 1 None Human IgG1 Human IgG1 VH/VL (knob, AAG) (hole, AAG) 12 PR001992 PR000511 PR000943 cross 1 None Human IgG1 Human IgG1 VH/VL (knob, AAG) (hole, AAG) 12 PR001993 PR000511 PR001035 cross 1 None Human IgG1 Human IgG1 VH/VL (knob, AAG) (hole, AAG) 12 PR001994 PR000511 PR001046 cross 1 None Human IgG1 Human IgG1 VH/VL (knob, AAG) (hole, AAG) 13 PR001995 PR000511 PR000940 cross 1 None Human IgG1 Human IgG1 Fd/LC (knob, AAG) (hole, AAG) 13 PR001996 PR000511 PR000943 cross 1 None Human IgG1 Human IgG1 Fd/LC (knob, AAG) (hole, AAG) 13 PR001997 PR000511 PR001035 cross 1 None Human IgG1 Human IgG1 Fd/LC (knob, AAG) (hole, AAG) 13 PR001998 PR000511 PR001046 cross 1 None Human IgG1 Human IgG1 Fd/LC (knob, AAG) (hole, AAG) 14 PR002299 PR001848 PR000940 Normal 2 RT- Human IgG1 Human IgG1 GS_5- (knob, AAG) (hole, AAG) KL 14 PR002300 PR001848 PR000940 Normal 2 RT- Human IgG1 Human IgG1 GS_15- (knob, AAG) (hole, AAG) KL 14 PR002301 PR001848 PR000940 Normal 2 RT- Human IgG1 Human IgG1 GS_25- (knob, AAG) (hole, AAG) KL 14 PR002308 PR001848 PR001046 Normal 2 RT- Human IgG1 Human IgG1 GS_5- (knob, AAG) (hole, AAG) KL 14 PR002309 PR001848 PR001046 Normal 2 RT- Human IgG1 Human IgG1 GS_15- (knob, AAG) (hole, AAG) KL 14 PR002310 PR001848 PR001046 Normal 2 RT- Human IgG1 Human IgG1 GS_25- (knob, AAG) (hole, AAG) KL 11 PR002929 PR001848 PR001046 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR002935 PR004616 PR001046 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002892 PR001848 PR001046 Normal 2 GS_5 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002895 PR001848 PR001046 Normal 2 GS_15 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002950 PR004616 PR001046 Normal 2 GS_5 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002953 PR004616 PR001046 Normal 2 GS_15 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002898 PR001848 PR001046 Normal 2 GS_2 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002901 PR001848 PR001046 Normal 2 GS_4 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002956 PR004616 PR001046 Normal 2 GS_2 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR002959 PR004616 PR001046 Normal 2 GS_4 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR003177 PR003886 PR001046 Normal 2 GS_5 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR003178 PR003886 PR001046 Normal 2 GS_15 Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 14 PR003690 PR003886 PR001046 Normal 2 GS_15 Human IgG1 Human IgG1 (knob, LALA, (hole, LALA, YTE) YTE) 11 PR003867 PR003886 PR004559 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003868 PR003886 PR004563 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003869 PR003886 PR004564 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003870 PR003886 PR004565 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003871 PR003886 PR004566 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003872 PR003886 PR004567 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003873 PR003886 PR004568 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003874 PR003886 PR004569 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003875 PR003886 PR004570 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003876 PR003886 PR004571 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003877 PR003886 PR004572 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003878 PR003886 PR004573 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003879 PR003886 PR004574 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003880 PR003886 PR004560 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003881 PR003886 PR004561 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) 11 PR003882 PR003886 PR004562 Normal 1 None Human IgG1 Human IgG1 (knob, LALA) (hole, LALA) (mutation code: Knob: S354C, T366W; Hole: Y349C, T366S, L368A, Y407V; AAG: L234A, L235A, P329G; LALA: L234A, L235A; YTE: M252Y, S254T, T256E.)
TABLE-US-00095 TABLE 7-15 BCMA×CD3 multispecific antibody molecules of Fab-Fc-VH(2) trivalent asymmetric structures containing two different anti-BCMA VH domain sequences Linker peptide Bispecific CD3 BCMA BCMA Structure (between Fc type of Fc type of Structure antibody antibody antibody antibody of Fab VH_B and Fab end VH_B end No. molecules (Fab) (VH_C) (VH_B) end VH_C) (mutation) (mutation) 15 PR002313 PR001848 PR000940 PR000943 Normal RT-GS_ Human IgG1 Human 15-KL (knob, AAG) IgG1 (hole, AAG) 15 PR002326 PR001848 PR001035 PR001046 Normal RT-GS_ Human IgG1 Human 15-KL (knob, AAG) IgG1 (hole, AAG) 15 PR002328 PR001848 PR001035 PR001046 Normal RT-GS_ Human IgG1 Human 25-KL (knob, AAG) IgG1 (hole, AAG) 15 PR002332 PR001848 PR001046 PR001035 Normal RT-GS_ Human IgG1 Human 15-KL (knob, AAG) IgG1 (hole, AAG) (mutation code: Knob: S354C, T366W; Hole: Y349C, T366S, L368A, Y407V; AAG: L234A, L235A, P329G.)
TABLE-US-00096 TABLE 7-16 Expression of BCMA × CD3 bispecific antibody molecule proteins of Fab-Fc- VH(n) asymmetric structures Yield (mg/L) Bispecific Expression Plasmid after Structure antibody system and transfection first SEC-HPLC No. molecules volume ratio purification purity (%) 11 PR001987 HEK293-F (40 ml) 3:2:4 61 67.88 11 PR001988 HEK293-F (40 ml) 3:2:4 50.7 66.65 11 PR001989 HEK293-F (40 ml) 3:2:4 76 86.06 11 PR001990 HEK293-F (40 ml) 3:2:4 68.3 76.97 12 PR001991 HEK293-F (40 ml) 3:2:4 20.8 71.97 12 PR001992 HEK293-F (40 ml) 3:2:4 8.7 77.76 12 PR001993 HEK293-F (40 ml) 3:2:4 12.6 77.71 12 PR001994 HEK293-F (40 ml) 3:2:4 17.1 80.01 13 PR001995 HEK293-F (40 ml) 3:2:4 118.3 70.29 13 PR001996 HEK293-F (40 ml) 3:2:4 71.3 71.98 13 PR001997 HEK293-F (40 ml) 3:2:4 60.7 79.66 13 PR001998 HEK293-F (40 ml) 3:2:4 62 39.96 14 PR002299 HEK293-F (40 ml) 1:1:1 20.5 46.03 14 PR002300 HEK293-F (40 ml) 1:1:1 31 80.48 14 PR002301 HEK293-F (40 ml) 1:1:1 14.4 75.42 14 PR002308 HEK293-F (40 ml) 1:1:1 14.7 64.92 14 PR002309 HEK293-F (40 ml) 1:1:1 3 75.96 14 PR002310 HEK293-F (40 ml) 1:1:1 26.8 71.46 15 PR002313 HEK293-F (40 ml) 1:1:1 24.8 70.13 15 PR002326 HEK293-F (40 ml) 1:1:1 14 84.62 15 PR002328 HEK293-F (40 ml) 1:1:1 27.5 79.04 15 PR002332 HEK293-F (40 ml) 1:1:1 23.1 82.13 11 PR002929 HEK293-F (40 ml) 1:1:1 13.5 94.45 11 PR002935 HEK293-F (40 ml) 1:1:1 4.55 94.26 14 PR002892 HEK293-F (40 ml) 1:1:1 6.5 76.9 14 PR002895 HEK293-F (40 ml) 1:1:1 16.9 84.34 14 PR002950 HEK293-F (40 ml) 1:1:1 3.3 75.26 14 PR002953 HEK293-F (40 ml) 1:1:1 7.4 89.17 14 PR002898 HEK293-F (40 ml) 1:1:1 5.6 81.72 14 PR002901 HEK293-F (40 ml) 1:1:1 5.8 83.72 14 PR002956 HEK293-F (40 ml) 1:1:1 5.4 78.14 14 PR002959 HEK293-F (40 ml) 1:1:1 6 73.9 14 PR003177 Expi-CHO (300 ml) 1:1:1 196 83.29 14 PR003178 Expi-CHO (300 ml) 1:1:1 188 83.04 14 PR003690 Expi-CHO (300 ml) 1:1:1 200 83.81 11 PR003867 HEK293-F (30 ml) 1:1:1 11.46 100 11 PR003868 HEK293-F (30 ml) 1:1:1 0.12 n.d. 11 PR003869 HEK293-F (30 ml) 1:1:1 5.63 100 11 PR003870 HEK293-F (30 ml) 1:1:1 2.4 100 11 PR003871 HEK293-F (30 ml) 1:1:1 6.7 100 11 PR003872 HEK293-F (30 ml) 1:1:1 8.92 100 11 PR003873 HEK293-F (30 ml) 1:1:1 10.9 97.4 11 PR003874 HEK293-F (30 ml) 1:1:1 11.31 100 11 PR003875 HEK293-F (30 ml) 1:1:1 26.19 100 11 PR003876 HEK293-F (30 ml) 1:1:1 11.88 100 11 PR003877 HEK293-F (30 ml) 1:1:1 10.87 100 11 PR003878 HEK293-F (30 ml) 1:1:1 12.5 96.2 11 PR003879 HEK293-F (30 ml) 1:1:1 24.05 100 11 PR003880 HEK293-F (30 ml) 1:1:1 4.49 100 11 PR003881 HEK293-F (30 ml) 1:1:1 19.29 100 11 PR003882 HEK293-F (30 ml) 1:1:1 11.61 100
Example 7.8.2. Construction of Molecules of scFv-Fc-VH(n) Asymmetric Structures
[0757] BCMA×CD3 bispecific antibody molecules of scFv-Fc-VH(n, n={1,2}) asymmetric structures were designed according to the structures described in Example 1.7 and Example 1.8 using anti-CD3 IgG antibodies and anti-BCMA heavy chain antibodies, with the results summarized in Table 7-17. The antibody molecule samples were prepared and analyzed according to the method described in Example 2, with the results summarized in Table 7-18.
TABLE-US-00097 TABLE 7-17 BCMA×CD3 bispecific antibody molecules of scFv-Fc-VH(n) asymmetric structures Linker peptide 2 Bispecific CD3 BCMA Structure Number of (between Fc type of Fc type of Structure antibody Antibody Antibody of scFv repetition n VH_B and Fab end VH_B end No. molecules (scFv) (VH) end for VH_B VH_B) (mutation) (mutation) 20 PR001999 PR000510 PR000940 VL-linker 1 None Human IgG1 Human IgG1 peptide- (knob, AAG) (hole, AAG) VH 20 PR002000 PR000510 PR000943 VL-linker 1 None Human IgG1 Human IgG1 peptide- (knob, AAG) (hole, AAG) VH 20 PR002001 PR000510 PR001035 VL-linker 1 None Human IgG1 Human IgG1 peptide- (knob, AAG) (hole, AAG) VH 20 PR002002 PR000510 PR001046 VL-linker 1 None Human IgG1 Human IgG1 peptide- (knob, AAG) (hole, AAG) VH 23 PR002867 PR002161 PR001046 VH-linker 2 RT-GS_ Human IgG1 Human IgG1 peptide-VL 15-KL (knob, AAG) (hole, AAG) 23 PR002868 PR002163 PR001046 VH-linker 2 RT-GS_ Human IgG1 Human IgG1 peptide-VL 15-KL (knob, AAG) (hole, AAG) 23 PR002869 PR002337 PR001046 VH-linker 2 RT-GS_ Human IgG1 Human IgG1 peptide-VL 15-KL (knob, AAG) (hole, AAG) 23 PR002870 PR002340 PR001046 VH-linker 2 RT-GS_ Human IgG1 Human IgG1 peptide-VL 15-KL (knob, AAG) (hole, AAG) (mutation code: Knob: S354C, T366W; Hole: Y349C, T366S, L368A, Y407V; AAG: L234A, L235A, P329G.)
TABLE-US-00098 TABLE 7-18 Expression of BCMA × CD3 bispecific antibody molecule proteins of scFv-Fc-VH(n) asymmetric structures Bispecific Expression Yield (mg/L) Structure antibody system and after first SEC-HPLC No. molecules volume purification purity (%) 20 PR001999 HEK293-F (40 ml) 18.4 74.35 20 PR002000 HEK293-F (40 ml) 13.6 77.84 20 PR002001 HEK293-F (40 ml) 1.0 60.21 20 PR002002 HEK293-F (40 ml) 14.0 79.47 23 PR002867 HEK293-F (40 ml) 7.4 66.68 23 PR002868 HEK293-F (40 ml) 8.8 67.14 23 PR002869 HEK293-F (40 ml) 17.4 83.62 23 PR002870 HEK293-F (40 ml) 6.5 74.84
Example 7.8.3. Sequences of BCMA×CD3 Bispecific Antibody Molecules and Control Molecules
[0758] The sequence numbers corresponding to the sequences of the BCMA×CD3 bispecific antibody molecules constructed in this example and the control molecules are listed in Table 7-20 and Table 7-19. In the bispecific antibody molecules, the sequence of the antigen-binding domain Fab of the anti-CD3 antibodies was derived from the sequences described in Table 7-11 and Table 7-13; and the sequence of the antigen-binding domain VH of the anti-BCMA antibodies was derived from the sequences described in Table 7-1 and Table 7-8. The structure numbers in Table 7-20 correspond to those in Table 1-1 and
TABLE-US-00099 TABLE 7-19 Sequence numbers of control molecules Antibody Polypeptide Polypeptide Polypeptide Alias No. Description chain 1 chain 2 chain 3 Positive PR000274 Anti-BCMA monoclonal 309 354 None control 1 antibody CA8-J6M0 Positive PR002199 BCMA × CD3 bispecific 420 421 422 control 2 antibody, derived from WO2019133761A1 Positive PR003106 BCMA × CD3 bispecific 453 None None control 3 antibody, derived from WO2017134134A1 SP34 PR000260 Anti-CD3 monoclonal 352 307 None antibody SP34
TABLE-US-00100 TABLE 7-20 Sequence numbers of BCMA × CD3 bispecific antibody molecules of this example Structure Antibody Polypeptide Polypeptide Polypeptide No. No. chain 1 chain 2 chain 3 11 PR001987 357 411 410 11 PR001988 357 411 412 11 PR001989 357 411 413 11 PR001990 357 411 414 11 PR002929 357 444 449 11 PR002935 357 450 449 11 PR003867 357 454 465 11 PR003868 357 454 466 11 PR003869 357 454 467 11 PR003870 357 454 468 11 PR003871 357 454 469 11 PR003872 357 454 470 11 PR003873 357 454 471 11 PR003874 357 454 472 11 PR003875 357 454 473 11 PR003876 357 454 474 11 PR003877 357 454 475 11 PR003878 357 454 476 11 PR003879 357 454 477 11 PR003880 357 454 478 11 PR003881 357 454 479 11 PR003882 357 454 480 12 PR001991 415 416 410 12 PR001992 415 416 412 12 PR001993 415 416 413 12 PR001994 415 416 414 13 PR001995 417 418 410 13 PR001996 417 418 412 13 PR001997 417 418 413 13 PR001998 417 418 414 14 PR002299 357 423 424 14 PR002300 357 423 425 14 PR002301 357 423 426 14 PR002308 357 423 427 14 PR002309 357 423 428 14 PR002310 357 423 429 14 PR002892 357 444 445 14 PR002895 357 444 446 14 PR002898 357 444 447 14 PR002901 357 444 448 14 PR002950 357 450 445 14 PR002953 357 450 446 14 PR002956 357 450 447 14 PR002959 357 450 448 14 PR003177 357 454 445 14 PR003178 357 454 446 14 PR003690 357 463 464 15 PR002313 357 423 430 15 PR002326 357 423 431 15 PR002328 357 423 432 15 PR002332 357 423 433 20 PR001999 419 410 None 20 PR002000 419 412 None 20 PR002001 419 413 None 20 PR002002 419 414 None 23 PR002867 440 428 None 23 PR002868 441 428 None 23 PR002869 442 428 None 23 PR002870 443 428 None
TABLE-US-00101 TABLE 7-21 Sequence numbers of CDRs of antigen-binding domains of BCMA×CD3 bispecific or multispecific antibody molecules Antigen- Structure Antibody binding No. No. domain No. LCDR1 LCDR2 LCDR3 HCDR1 HCDR2 HCDR3 11 PR001987 #1 172 192 216 20 68 128 #2 None None None 15 75 133 11 PR001988 #1 172 192 216 20 68 128 #2 None None None 24 76 134 11 PR001989 #1 172 192 216 20 68 128 #2 None None None 25 77 135 11 PR001990 #1 172 192 216 20 68 128 #2 None None None 26 78 136 11 PR002929 # 172 192 216 30 68 128 #2 None None None 26 78 136 11 PR002935 #1 172 192 216 30 68 128 #2 None None None 26 78 136 11 PR003867 #1 172 192 216 30 68 128 #2 None None None 26 90 136 11 PR003868 #1 172 192 216 30 68 128 #2 None None None 36 90 146 11 PR003869 #1 172 192 216 30 68 128 #2 None None None 35 76 147 11 PR003870 #1 172 192 216 30 68 128 #2 None None None 34 78 148 11 PR003871 #1 172 192 216 30 68 128 #2 None None None 35 76 136 11 PR003872 #1 172 192 216 30 68 128 #2 None None None 35 90 146 11 PR003873 #1 172 192 216 30 68 128 #2 None None None 34 76 136 11 PR003874 #1 172 192 216 30 68 128 #2 None None None 35 76 146 11 PR003875 #1 172 192 216 30 68 128 #2 None None None 34 76 146 11 PR003876 #1 172 192 216 30 68 128 #2 None None None 35 90 148 11 PR003877 #1 172 192 216 30 68 128 #2 None None None 35 90 136 11 PR003878 #1 172 192 216 30 68 128 #2 None None None 35 90 136 11 PR003879 #1 172 192 216 30 68 128 #2 None None None 34 76 146 11 PR003880 #1 172 192 216 30 68 128 #2 None None None 34 78 146 11 PR003881 #1 172 192 216 30 68 128 #2 None None None 35 78 147 11 PR003882 #1 172 192 216 30 68 128 #2 None None None 35 90 147 12 PR001991 #1 172 192 216 20 68 128 #2 None None None 15 75 133 12 PR001992 #1 172 192 216 20 68 128 #2 None None None 24 76 134 12 PR001993 #1 172 192 216 20 68 128 #2 None None None 25 77 135 12 PR001994 #1 172 192 216 20 68 128 #2 None None None 26 78 136 13 PR001995 #1 172 192 216 20 68 128 #2 None None None 15 75 133 13 PR001996 #1 172 192 216 20 68 128 #2 None None None 24 76 134 13 PR001997 #1 172 192 216 20 68 128 #2 None None None 25 77 135 13 PR001998 #1 172 192 216 20 68 128 #2 None None None 26 78 136 14 PR002299, #1 172 192 216 30 68 128 PR002300, #2 None None None 15 75 133 PR002301 14 PR002308, #1 172 192 216 30 68 128 PR002309, #2 None None None 26 78 136 PR002310, PR002892, PR002895, PR002898, PR002901 14 PR002950, #1 172 192 216 30 68 128 PR002953, #2 None None None 26 78 136 PR002956, PR002959 14 PR003177, #1 172 192 216 30 68 128 PR003178, #2 None None None 26 78 136 PR003690 15 PR002313 #1 172 192 216 30 68 128 #2 None None None 15 15 133 #3 None None None 24 76 134 15 PR002326, #1 172 192 216 30 68 128 PR002328, #2 None None None 25 77 135 PR002332 #3 None None None 26 78 136 20 PR001999 #1 172 192 216 20 68 128 #2 None None None 15 75 133 20 PR002000 #1 172 192 216 20 68 128 #2 None None None 24 76 134 20 PR002001 #1 172 192 216 20 68 128 #2 None None None 25 77 135 20 PR002002 #1 172 192 216 20 68 128 #2 None None None 26 78 136 23 PR002867 #1 177 191 221 15 84 141 #2 None None None 26 78 136 23 PR002868 #1 178 197 222 31 85 142 #2 None None None 26 78 136 23 PR002869 #1 177 191 223 31 86 141 #2 None None None 26 78 136 23 PR002870 #1 179 198 224 31 85 142 #2 None None None 26 78 136
Example 7.9. Binding of Bispecific Antibody Molecules to BCMA
[0759] This example is intended to investigate the binding ability of the BCMA×CD3 bispecific antibodies to BCMA.
[0760] The binding ability of the bispecific antibody molecules to cells such as an HEK293T cell line HEK293T/hBCMA (KYinno, KC-0233) highly expressing human BCMA, an HEK293T cell line HEK293T/cyno BCMA (KYinno, KC-0979) highly expressing cynomolgus monkey BCMA, and a cell line NCI-H929 (ATCC, CRL-9068) highly expressing human BCMA was tested according to the method described in Example 7.3 by flow cytometry FACS.
[0761] In this example, the anti-BCMA monoclonal antibody PR000274 was used as a positive control 1 molecule. The BCMA×CD3 bispecific antibody molecule PR002199 constructed using the sequences in the patent WO2019133761A1 was used as the positive control 2 molecule. The BCMA×CD3 bispecific antibody molecule PR003106 constructed using the sequences in the patent WO2017134134A1 was used as the positive control 3 molecule.
Example 7.9.1. Binding to HEK293T/hBCMA Cells Highly Expressing Human BCMA
[0762] As shown in
TABLE-US-00102 TABLE 7-22 Binding to HEK293T/hBCMA Maximum Maximum Maximum Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI PR001990 n.d. 13368 PR002309 0.3555 14957 PR002309 0.2586 100051 PR002929 9.017 17606 PR002892 0.7675 15526 PR002895 0.1832 93152 PR002935 14.82 23928 PR002895 0.3851 14041 PR002953 0.2261 91617 PR002950 n.d. 22111 PR003178 0.1878 99267 PR002953 n.d. 25243 Positive 0.6024 117412 control 2 PR002898 0.791 12631 PR002901 0.6536 14732 PR002956 n.d. 17620 PR002959 n.d. 23931 Positive 1.13 17043 control 2 Experiment 1 Experiment 2 Experiment 3
Example 7.9.2. Binding to NCI-H929 Tumor Cells Highly Expressing Human BCMA
[0763] As shown in
TABLE-US-00103 TABLE 7-23 Binding to NCI-H929 Maximum Maximum Maximum Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI Antibody EC.sub.50 (nM) MFI PR001990 n.d. 1837 PR001991 n.d. 1979 PR002929 50.2 6420 PR002929 n.d. 3194 PR001992 n.d. 3208 PR003867 4.6 8594 PR002935 n.d. 3836 PR001993 n.d. 1290 PR003868 7.3 17363 PR001994 n.d. 3434 PR003869 1.7 12479 PR001995 n.d. 2593 PR003870 3.3 10638 PR001996 n.d. 3325 PR003871 2 10580 PR001997 n.d. 1456 PR003872 1.1 11274 PR001998 n.d. 3259 PR003873 1.3 10202 PR001999 n.d. 3476 PR003874 1.5 10978 PR002000 n.d. 4643 PR003875 1.2 9845 PR002002 n.d. 4500 PR003876 2.3 10901 Positive n.d. 6160 PR003877 1.7 11127 control 1 PR003878 1.5 9241 PR003879 2.1 10842 PR003880 5.6 8662 PR003881 2.6 10278 PR003882 1.8 11109 PR002299 n.d. 32843 PR002309 1.731 4712 PR003178 1.232 15578 PR002300 n.d. 44154 PR002892 4.272 4360 PR002895 1.53 15431 PR002301 n.d. 52958 PR002895 2.006 4201 PR002953 1.339 15078 PR002308 1.816 63931 PR002950 4.114 4188 Positive n.d. 25908 control 3 PR002309 1.336 68011 PR002953 2.908 4303 PR002310 2.094 61263 PR002898 1.941 3728 PR002313 17.15 78009 PR002901 2.319 4182 PR002326 3.537 59994 PR002956 3.948 3566 PR002328 6.893 58892 PR002959 4.3 4212 PR002332 9.004 84510 Positive 4.294 88218 control 2 Positive 28.94 109555 control 1
Example 7.9.3. Binding to HEK293T/Cyno BCMA Cells Highly Expressing Cynomolgus Monkey BCMA
[0764] As shown in
TABLE-US-00104 TABLE 7-24 Binding to HEK293T/cyno BCMA Maximum Maximum Maximum Antibody MFI Antibody MFI Antibody MFI PR001990 9167 PR002309 16248 PR002301 12958 PR002929 13791 PR002892 14983 PR002308 39286 PR002935 21994 PR002895 13799 PR002309 41640 PR002950 26570 PR002310 42045 PR002953 35655 PR002898 8188 PR002901 11033 PR002956 16151 PR002959 30644 Positive 926 control 2 PR002313 7608 PR002309 128176 PR002326 6444 PR002895 103462 PR002328 7807 PR002953 109345 PR003178 115022 Positive 4698 control 2
Example 7.10. Binding of Bispecific Antibody Molecules to T Cells
[0765] This example is intended to investigate the binding ability of the BCMA×CD3 bispecific antibodies to T cells.
[0766] The binding ability of the antibody molecules to human or cynomolgus monkey T cells was tested by flow cytometry FACS. Specifically, T cells were isolated from human or cynomolgus monkey PBMC cells using a T cell isolation kit (Meltenyi, #130-096-535). The T cell density was adjusted to 1×10.sup.6 cells/mL. The cells were seeded in a 96-well plate (Corning, #3894) at 100 μL/well, followed by the addition of test antibodies diluted in a 3-fold gradient at a concentration that was 2 times the final concentration, each at 100 μL/well. The cells were incubated at 4° C. for 1 h away from light. Then, the cells in each well were rinsed twice with 100 μL of pre-cooled PBS, and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Thereafter, a fluorescent secondary antibody (Alexa Fluor 488-conjugated AffiniPure Goat Anti-Human IgG, Fcγ Fragment Specific, Jackson, #109-545-06, diluted in a 1:500 ratio) was added at 100 μL/well, and the plate was incubated at 4° C. for 30 min away from light. The cells in each well were rinsed twice with 100 μL of pre-cooled PBS, and centrifuged at 500 g at 4° C. for 5 min, and then the supernatant was discarded. Finally, the cells in each well were resuspended in 200 μL of pre-cooled PBS. Fluorescence signal values were read using a BD FACS CANTOII flow cytometer or an ACEA NovoCyte flow cytometer, and the data were processed and analyzed using FlowJo v10 (FlowJo, LLC) software. The data were processed and analyzed by plotting using GraphPad Prism 8 software, and binding curves of the antibodies to target cells, EC.sub.50 values and other parameters were obtained through four-parameter nonlinear fitting.
[0767] In this example, the anti-CD3 monoclonal antibody SP34 (antibody No. PR000260) was used as a positive control; and the positive control 2 bispecific antibody molecule (antibody No. PR002199) was used as another control molecule.
Example 7.10.1. Binding to Human T Cells
[0768] As shown in
TABLE-US-00105 TABLE 7-25 Binding to human T cells Maximum Maximum Maximum Antibody MFI Antibody MFI Antibody MFI PR001987 5159 PR001995 2917 PR001990 350167 PR001988 5796 PR001996 3439 PR002929 283045 PR001989 6680 PR001997 4458 PR002309 316716 PR001990 5453 PR001998 3318 PR002895 321582 PR001991 3244 PR001999 1166 PR003178 23926 PR001992 2240 PR002000 1731 PR002953 16961 PR001993 4785 PR002002 1118 Positive 6847 control 2 PR001994 3381 SP34 6026 hIgG1 iso 2995 SP34 7162 hIgG1 iso 12 Experiment 1 Experiment 2 Experiment 3
Example 7.10.2. Binding to Cynomolgus Monkey T Cells
[0769] As shown in
TABLE-US-00106 TABLE 7-26 Binding to cynomolgus monkey T cells Maximum Antibody MFI PR001990 15557 PR002929 10128 PR002309 11664 PR003178 10725 PR002895 18601 PR002953 9708 PR003177 12107 PR002950 8827 Positive 1109 control 2 hIgG1 iso 794
Example 7.11. Binding Affinity of Bispecific Antibody Molecules for BCMA Determined by a BLI Method
[0770] In this example, the binding kinetics between the BCMA×CD3 bispecific antibody molecule and the BCMA antigenic protein were analyzed by the method described in Example 7.5 using an Octet Red96e molecular interaction analyzer (ForteBio, Octet Red96e).
[0771] The bispecific antibody molecules were all able to bind to human and cynomolgus monkey BCMAs (Table 7-27 and Table 7-28), whereas the positive control 2 bispecific antibody molecule was unable to bind to human and cynomolgus monkey BCMAs. Moreover, the ratio of the binding affinity (KD) values of the bispecific antibody molecules of this example to human BCMA (ACRO Biosystems, #BC7-H82F0) and to cynomolgus monkey BCMA (ACRO Biosystems, #BCA-C82F4) (Table 7-29) was within 5-fold (0.5-5), indicating that there is a good correlation.
TABLE-US-00107 TABLE 7-27 Binding affinity of BCMA × CD3 bispecific antibody molecules for human BCMA protein Full Antibody Antigen KD (M) kon(1/Ms) kdis(1/s) R{circumflex over ( )}2 Positive huBCMA.Fc 6.55E−10 2.06E+05 1.35E−04 0.9994 control 1 PR001046 huBCMA.Fc 7.75E−11 4.59E+05 3.56E−05 0.9952 PR001990 huBCMA.Fc 1.95E−09 3.22E+05 6.29E−04 0.995 Positive huBCMA.Fc 4.52E−11 5.45E+05 2.46E−05 0.9969 control 2 PR002309 huBCMA.Fc 4.48E−11 4.22E+05 1.89E−05 0.9974 PR002895 huBCMA.Fc 1.97E−10 4.12E+05 8.11E−05 0.9974 PR002929 huBCMA.Fc 5.95E−09 2.49E+05 1.48E−03 0.9933 PR002953 huBCMA.Fc 2.25E−10 4.74E+05 1.07E−04 0.998 PR003178 huBCMA.Fc 2.36E−10 4.94E+05 1.17E−04 0.9978
TABLE-US-00108 TABLE 7-28 Binding affinity of BCMA × CD3 bispecific antibody molecules for cynomolgus monkey BCMA protein Full Antibody Antigen KD (M) kon(1/Ms) kdis(1/s) R{circumflex over ( )}2 Positive cyBCMA.Fc 3.88E−11 2.00E+05 7.76E−06 0.9456 control 1 PR001046 cyBCMA.Fc 1.19E−10 6.33E+05 7.54E−05 0.9965 PR001990 cyBCMA.Fc 3.35E−09 7.46E+05 2.50E−03 0.9689 Positive cyBCMA.Fc \ control 2 PR002309 cyBCMA.Fc 1.41E−10 8.23E+05 1.16E−04 0.9973 PR002895 cyBCMA.Fc 2.72E−10 8.90E+05 2.42E−04 0.9983 PR002929 cyBCMA.Fc 6.62E−09 8.79E+05 5.82E−03 0.9437 PR002953 cyBCMA.Fc 1.95E−10 3.65E+05 7.12E−05 0.9989 PR003178 cyBCMA.Fc 3.19E−10 8.22E+05 2.62E−04 0.9981
TABLE-US-00109 TABLE 7-29 Ratio of binding affinity values for BCMA KD ratio (cy BCMA/hu Antibody BCMA) Positive control 1 0.06 PR001046 1.54 PR001990 1.72 Positive control 2 N/A PR002309 3.16 PR002895 1.38 PR002929 1.11 PR002953 0.87 PR003178 1.35
Example 7.12. Killing Assay on Target Cells by Bispecific Antibody Molecules
[0772] In this example, T cell activation ability and specific target cell killing ability mediated by BCMA×CD3 bispecific antibody molecules were investigated.
Example 7.12.1. In Vitro Killing Assay on NCI-H929 Cells Highly Expressing BCMA and Release of Cytokines
[0773] In this example, the ability of bispecific antibody molecules to activate T cells, release cytokines and kill tumor cells in the presence of NCI-H929 tumor cells (ATCC, CRL-9068) highly expressing BCMA was investigated. The effector cells may be human peripheral blood mononuclear cells PBMCs or T cells isolated from PBMCs.
[0774] Specifically, the density of effector cells (PBMCs or T cells) was adjusted to 1.1×10.sup.6 cells/mL and the density of NCI-H929 was adjusted to 0.11×10.sup.6 cells/mL in a culture medium (RPMI1640 medium containing 5% FBS). The two cell suspensions were each seeded into a 96-well plate (Corning, #3799) at 90 μL cells/well. Then, the test antibodies at different concentrations (gradient dilution to a concentration that was 10 times the final concentration) were added at 20 μL/well, wherein the antibody concentration may be the final concentration of 30 nM, or a total of 3 concentrations obtained by a 20-fold gradient dilution from the highest final concentration of 1 nM, or a total of 10 concentrations obtained by a 4-fold gradient dilution from the highest final concentration of 30 nM. hIgG1 iso (CrownBio, #C0001) was used as an isotype control. The final effector-to-target ratio was 10:1, and two duplicate wells were set for each concentration. The well to which the test antibody was added was called ER (experimental well, containing the test antibody sample and the effector and target cells); meanwhile, different control groups were set in the plate according to the parameter composition in the following formula: ESR (natural release well for effector cell, containing only effector cell and culture medium); TSR (natural release well for target cell, containing only target cell and culture medium); CMB (medium reference well, containing only medium); TMR (maximum release well for target cell, containing only target cell and culture medium); and VCC (volume reference well, containing only medium). The 96 well plate was incubated in a carbon dioxide incubator at 37° C. for 24 h. Then, 10 μL of lysis buffer was added into the TMR and VCC wells, and the plate was incubated for 30 min. After incubation was completed, the supernatant was added into a 96-well plate (Corning, #3599) at 50 μL/well, followed by the addition of a cytotoxicity assay reagent (CytoTox 96® non-radioactive cytotoxicity assay kit, Promega, #G1780) at 50 μL/well. After incubation for 30 min at room temperature, 50 μL of reaction stop buffer was added to stop the reaction. Finally, the absorbance value was read at 490 nM using an Enspire™ multifunctional microplate reader (Perkin Elmer, Inc.), and the target cell killing rate was calculated according to the following calculation formula:
killing rate=((ER−CMB)−(ESR−CMB)−(TSR−CMB))/(TMR−VCC)×100%
[0775] wherein: [0776] ER=experimental well, sample+ effector cells+target cells [0777] ESR=natural release well for effector cell, effector cell+culture medium [0778] TSR=natural release well for target cell, target cell+culture medium [0779] TMR=maximum release well for target cell, target cell+medium+lysis buffer [0780] VCC=volume reference well, medium+lysis buffer [0781] CMB=medium reference well, medium
[0782] In addition to cytotoxicity, cytokine release levels in the cell supernatant can also be determined. Briefly, 50 μL of supernatant was removed for determination of cytokine levels. The concentration of TNF-α in the supernatant was determined using a TNF-α ELISA kit (Thermo, #88-7346-88); the concentration of IL-6 in the supernatant was determined using an IL-6 ELISA kit (Thermo, #88-7066-88); the concentration of IL-2 in the supernatant was determined using an IL-2 ELISA kit (Thermo, #88-7025-88); the concentration of IFN-γ in the supernatant was determined using an IFN-γ ELISA kit (Thermo, #88-7316-88); and the concentration of IL-10 in the supernatant was determined using an IL-10 ELISA kit (Thermo, #88-7106-88). The ELISA assay was performed by referring to the instructions of relevant kit. The data was processed and analyzed by plotting using GraphPad Prism 8 software.
[0783] As shown in
[0784] As shown in
[0785] As shown in
[0786] As shown in
[0787] As shown in
TABLE-US-00110 TABLE 7-30 In vitro killing of NCI-H929 cells by effector cells and release of cytokines mediated by BCMA × CD3 bispecific antibody molecules Positive Antibody PR001990 PR002309 control 2 NCI-H929 Maximum killing 61.38 69.52 61.2 killing rate % EC.sub.50 (nM) 0.5901 0.007717 0.1603 IFN-γ Maximum (pg/ml) 1232 1950 1017 EC.sub.50 (nM) 1.358 0.01945 0.483 TNF-α Maximum (pg/mL) 1198 1298 608.1 EC.sub.50 (nM) 5.486 0.0445 0.4638 IL-2 Maximum (pg/mL) 185.4 222 21.51 EC.sub.50 (nM) 5.292 0.03746 2.272 IL-6 Maximum (pg/ml) 272.9 208.9 245.1 EC.sub.50 (nM) 8.204 0.1945 13.13 IL-10 Maximum (pg/ml) 776.8 1054 582.8 EC.sub.50 (nM) 1.956 0.02982 0.8611
TABLE-US-00111 TABLE 7-31 In vitro killing of NCI-H929 cells by effector cells and release of cytokines mediated by BCMA×CD3 bispecific antibody molecules Positive Positive Antibody PR002895 PR002953 PR003178 control 2 control 3 NCI- Maximum killing 57.93 57.51 56.78 62.03 61.5 H929 rate % killing EC.sub.50 (nM) 0.002932 0.04699 0.01018 0.1154 0.01919 IFN-γ Maximum (pg/ml) 1441 639.8 1207 658.4 2247 EC.sub.50 (nM) 0.02232 0.2124 0.0595 0.2607 0.09596 TNF-α Maximum (pg/ml) 1282 894.2 1330 1021 2506 EC.sub.50 (nM) 0.008184 0.1965 0.02814 0.2243 0.08062 IL-2 Maximum (pg/ml) 100.1 23.57 101.1 25.79 300.2 EC.sub.50 (nM) 0.02112 0.7954 0.1748 0.3118 0.3374 IL-6 Maximum (pg/ml) 118.1 68.45 89.66 71.43 128.4 EC.sub.50 (nM) 0.008391 0.1278 0.04478 0.3411 0.1101 IL-10 Maximum (pg/ml) 239.6 129.2 321.5 190.5 516.9 EC.sub.50 (nM) 0.01341 0.2081 0.1044 0.335 0.1007
Example 7.12.2. Influence of Soluble APRIL and Soluble BAFF on the Target Cell Killing Effect of Bispecific Antibody Molecules
[0788] In this example, the influence of BCMA ligands (APRIL and BAFF) on the target cell killing effect of bispecific antibody molecules was further investigated on the basis of the method described in Example 7.12.1, wherein the concentrations of APRIL and BAFF were about 100 ng/mL in the plasma of multiple myeloma patients (Blood 2004; 103: 3148-3157). Specifically, in the method described in Example 7.12.1, when the test antibodies at different concentrations were added, each of the BCMA ligand proteins were also added at 20 μL/well, so that the final concentrations of the soluble ligand proteins were 100 ng/mL and 10 ng/mL, respectively. The soluble APRIL protein (sAPRIL) was a recombinant human APRIL protein (Novoprotein, #CU89); and the soluble BAFF protein (sBAFF) was a recombinant human BAFF protein (ACRO Biosystems, #BAF-H5248). The effector cells were human PBMCs or T cells and the target cells were NCI-H929. Target cell killing rates were calculated by the method described in Example 7.12.1.
[0789] As shown in
TABLE-US-00112 TABLE 7-32 Killing of NCI-H929 by BCMA × CD3 bispecific antibody molecules in the presence of soluble APRILs or BAFFs at various concentrations T cell + PR001990 + 10 PR001990 + 100 PR001990 + 10 PR001990 + 100 NCI-H929 PR001990 ng/mL sBAFF ng/mL sBAFF ng/mL sAPRIL ng/mL sAPRIL Maximum killing 83.57 81.46 84.47 87.3 86.13 rate % EC.sub.50 (nM) 0.07327 0.07866 0.09395 0.08791 0.1545 T cell + PR002309 + 10 PR002309 + 100 PR002309 + 10 PR002309 + 100 NCI-H929 PR002309 ng/mL sBAFF ng/mL sBAFF ng/mL sAPRIL ng/mL sAPRIL Maximum killing 78.49 79.37 79.63 76.24 78.13 rate % EC.sub.50 (nM) 0.0004388 0.0004473 0.0004741 0.0005381 0.0009908 PBMC + PR003178 + 10 PR003178 + 100 PR003178 + 10 PR003178 + 100 NCI-H929 PR003178 ng/mL sBAFF ng/mL sBAFF ng/ml sAPRIL ng/mL sAPRIL Maximum killing 53.3 58 63.5 61.6 57.6 rate % EC.sub.50 (nM) 0.007 0.005 0.008 0.009 0.011 PBMC + Positive Positive control 2 + Positive control 2 + Positive control 2 + Positive control 2 + NCI-H929 control 2 10 ng/mL sBAFF 100 ng/mL sBAFF 10 ng/ml sAPRIL 100 ng/ml sAPRIL Maximum killing 60.5 58.3 67.7 61 67.2 rate % EC.sub.50 (nM) 0.103 0.063 0.076 0.096 0.253 PBMC + Positive Positive control 3 + Positive control 3 + Positive control 3 + Positive control 3 + NCI-H929 control 3 10 ng/mL sBAFF 100 ng/mL sBAFF 10 ng/ml sAPRIL 100 ng/ml sAPRIL Maximum killing 58.2 61.4 61.7 55.9 62.3 rate % EC.sub.50 (nM) 0.014 0.015 0.022 0.027 0.026
Example 7.12.3. Influence of Soluble BCMA on the Target Cell Killing Effect of Bispecific Antibody Molecules
[0790] BCMA is a transmembrane protein, but its extracellular region can be shed from the cell membrane to form soluble BCMA (sBCMA). The level of sBCMA is observed to increase to different degrees in the plasma of multiple myeloma patients, with the median concentration of 176.0 ng/mL (Leuk Res. 2019 June; 81: 62-66).
[0791] In this example, optimization was performed on the basis of the method described in Example 7.12.1 to investigate the influence of soluble BCMA (sBCMA) on the target cell killing effect of bispecific antibody molecules. Specifically, in the method described in Example 7.12.1, when the test antibodies at different concentrations were added, the recombinant human BCMA protein (ACRO Biosystems, #BCA-H522y) was also added at 20 μL/well to reach final concentrations of 500 ng/mL, 250 ng/mL, 125 ng/mL and 62.5 ng/mL. The effector cells were human PBMCs and the target cells were NCI-H929. Target cell killing rates were calculated by the method described in Example 7.12.1.
[0792] As shown in
TABLE-US-00113 TABLE 7-33 Killing of NCI-H929 by BCMA × CD3 bispecific antibody molecules in the presence of soluble BCMA at various concentrations PR001990 + PR001990 + PR001990 + PR001990 + T cell + 62.5 ng/ml 125 ng/mL 250 ng/mL 500 ng/mL NCI-H929 PR001990 sBCMA sBCMA sBCMA sBCMA Maximum 83.77 82.11 83.23 82.17 82.71 killing rate % EC.sub.50 (nM) 0.07867 0.1763 0.2341 0.387 0.5458 PR002309 + PR002309 + PR002309 + PR002309 + T cell + 62.5 ng/mL 125 ng/mL 250 ng/mL 500 ng/ml NCI-H929 PR002309 sBCMA sBCMA sBCMA sBCMA Maxiimum 78.68 78.68 77.21 78.39 78.47 killing rate % EC.sub.50 (nM) 0.000393 0.002961 0.00347 0.005002 0.008797 PR003178 + PR003178 + PR003178 + PR003178 + PBMC + 62.5 ng/ml 125 ng/mL 250 ng/ml 500 ng/ml NCI-H929 PR003178 sBCMA sBCMA sBCMA sBCMA Maximum 56.1 51.7 52.2 50.9 45.2 killing rate % EC.sub.50 (nM) 0.005 0.009 0.014 0.065 0.12 Positive control Positive control Positive control Positive control PBMC + Positive 2 + 62.5 ng/ml 2 + 125 ng/ml 2 + 250 ng/ml 2 + 500 ng/ml NCI-H929 control 2 sBCMA sBCMA sBCMA sBCMA Maximum 43.3 48.9 39.6 40.9 41.8 killing rate % EC.sub.50 (nM) 0.2 0.8 1 3.5 7.7 Positive control Positive control Positive control Positive control PBMC + Positive 3 + 62.5 ng/ml 3 + 125 ng/ml 3 + 250 ng/ml 3 + 500 ng/ml NCI- H929 control 3 sBCMA sBCMA sBCMA sBCMA Maximum 57.3 58.6 55.5 56.8 68.3 killing rate % EC.sub.50 (nM) 0.01 0.033 0.074 0.107 0.829
Example 7.13. Pharmacokinetic Study
[0793] In this example, the pharmacokinetic properties of the BCMA×CD3 bispecific antibody molecule of a Fab-Fc-VH asymmetric structure (PR002929) and the BCMA×CD3 bispecific antibody molecule of a Fab-Fc-VH(2) asymmetric structure (PR003178) at a single dose in mice or rats were investigated.
[0794] The test was performed as follows: 6 female BALB/c mice or 3 SD rats with appropriate body weight were selected and administered with the fusion protein by intravenous injection at a dose of 5 mg/kg. The whole blood was collected before the administration and 0.25 h, 5 h, 24 h (1 day), 2 days, 4 days, 7 days, 10 days and 14 days after the administration, left to stand for 30 min for coagulation, and centrifuged at 2,000 g at 4° C. for 5 min, and the isolated serum sample was cryopreserved at −80° C. until it was taken for analysis. In this example, the drug concentration in the serum was quantitatively determined by two methods. The method I, namely the Fc end detection ELISA method, for quantitatively determining the drug concentration in the serum was performed by capturing BCMA×CD3 bispecific antibody molecules containing a human Fc end in the serum using a goat anti-human Fc polyclonal antibody coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody. The method II, namely the BCMA end detection ELISA method, for quantitatively determining the drug concentration in the serum was performed by capturing intact BCMA×CD3 bispecific antibody molecules containing an anti-BCMA VH end in the serum using a recombinant BCMA protein (Human BCMA/TNFRSF17 Protein His Tag, ACRO Biosystems, #BCA-H522y) coating a 96-well plate, and then adding an HRP-labeled goat anti-human Fc secondary antibody. Pharmacokinetic parameters were analyzed using Phoenix WinNonlin software version 8.2 by non-compartmental analysis (NCA).
[0795] As shown in
[0796] As shown in
[0797] The pharmacokinetic parameters of BCMA×CD3 bispecific antibody molecules in mice or rats were summarized in Table 7-34.
TABLE-US-00114 TABLE 7-34 Pharmacokinetic parameters of BCMA×CD3 bispecific antibody molecules in mice or rats Bispecific PR003178 PR002929 PR003178 antibody molecules Animals (number) BALB/c mice (n = 6) BALB/c mice (n = 6) SD rats (n = 3) Antibody dosage 5 mg/kg, I.V. 5 mg/kg, I.V. 5 mg/kg, I.V. BCMA BCMA BCMA Fc end end Fc end end Fc end end PK parameters detection detection detection detection detection detection T½ (hr) 230.5 98.0 167.5 100.8 135.1 109.8 Vd (mL/kg) 218.4 189.4 126.7 171.2 137.2 181.2 AUCall 4,650 3,381 6,886 3,878 5,593 3,799 (μg*hour/mL) Cl (mL/hr/kg) 0.72 1.34 0.56 1.18 0.76 1.21 C0 (μg/mL) 93.4 87.4 106.4 100.1 83.3 76.3
Example 7.14. Evaluation of Anti-Tumor Efficacy in NCI-H929/Human PBMC Mouse Model
[0798] This example is intended to evaluate the anti-tumor efficacy of BCMA×CD3 bispecific antibodies in vivo. Female NCG mice aged 6-8 week were intraperitoneally injected (i.p.) with 3×10.sup.6 human PBMCs 3 days before tumor cell inoculation, and then each was subcutaneously inoculated with 5×10.sup.6 NCI-H929 cells resuspended in a mixed solution of PBS and Matrigel (1:1) (0.1 mL/mice) on the day of tumor cell inoculation. When the tumor volume reached 90 mm.sup.3, the mice were randomized into groups of 6. After grouping, specific concentrations of antibody drugs diluted in PBS were administered intravenously (i.v.) at a specific dose and frequency. In this example, multiple dosing regimens were employed: 1) a 10 μg/mouse dose group, single dose; and 2) 10 μg/mouse and 3 μg/mouse dose groups, 1 dose per week for a total of 2 doses (QW×2). PBS was used as a blank for each experiment. Tumor volume and body weight of mice were measured on days 3, 7, 10 and 14 after the first administration. The tumor volume was calculated as follows: tumor volume (mm.sup.3)=0.5×(long diameter of tumor×short diameter of tumor.sup.2).
[0799] As shown in
[0800] As shown in
Example 7.15. Summary
[0801] In this example, BCMA×CD3 bispecific antibody molecules of a variety of asymmetric structures are constructed using the antigen-binding domain Fab (or scFv form) of the anti-CD3 IgG antibody and the antigen-binding domain VH of the anti-BCMA HCAb antibody. This shows the flexibility of constructing a bispecific antibody molecular structure based on HCAb. The bispecific antibody molecules of this example can simultaneously bind to human BCMA and human T cells, and also to cynomolgus monkey BCMA and cynomolgus monkey T cells. Therefore, cynomolgus monkeys can be used for non-primate toxicological risk assessment, which is very important for clinical development. However, the positive control 2 bispecific antibody molecule does not have this property of binding to the cynomolgus monkey target.
[0802] In this example, a series of BCMA×CD3 bispecific antibody molecules are constructed. During their constructions, the binding ability to T cells is modified by regulating the sequence and the fine structure of the CD3-binding domain, and the binding ability to target cells expressing BCMA is modified by regulating the sequence and the number of the BCMA-binding domain, so that the T cell activation ability and specific target cell killing ability of the bispecific antibody molecules are further regulated. In an in vitro target cell killing assay, the bispecific antibody molecules of Fab-Fc-VH(2) asymmetric structures (PR002309, PR002895, PR002953 and PR003178) have superior target cell killing EC.sub.50 to the positive control 2; moreover, PR002895, PR002953 and PR003178 caused lower release levels of various cytokines than the positive control 3. In an in vivo anti-tumor efficacy mouse model, the efficacy of PR002309 and PR003178 is significantly superior to that of the positive control 2 molecule at an equal dose; and the efficacy of PR002895 in the low dose group is even slightly superior to that of the positive control 2 molecule in the high dose group.
[0803] In particular, PR003178 has significantly superior target cell killing ability to the positive control 2 and has comparable target cell killing ability to the positive control 3. However, PR003178 has lower release levels of cytokines than the positive control 3. This indicates that PR003178 can control the release level of cytokines while maintaining effective tumor killing efficiency to reduce the risk of cytokine release syndrome, potentially better balancing efficacy and safety in the clinic and leading to a better therapeutic window.