METHOD AND APPLICATION FOR MEASURING THE INTRACELLULAR WATER TRANSMEMBRANE EFFLUX RATE, AND MEASUREMENT METHOD AND SYSTEM FOR MAGNETIC RESONANCE IMAGING BIOMARKER OF GLIOMA
20230349997 · 2023-11-02
Inventors
- RUILIANG BAI (HANGZHOU, ZHEJIANG PROVINCE, CN)
- YINHANG JIA (HANGZHOU, ZHEJIANG PROVINCE, CN)
- YINGCHAO LIU (HANGZHOU, ZHEJIANG PROVINCE, CN)
- GUANGXU HAN (HANGZHOU, ZHEJIANG PROVINCE, CN)
Cpc classification
International classification
Abstract
The invention discloses a method for measuring the intracellular water transmembrane efflux rate (k.sub.io): setting magnetic resonance imaging parameters and measuring the noise level during scanning. Optimizing the flip angle and resetting it through Monte Carlo simulation. Scanning quantitative T1 imaging. Scanning dynamic-contrast-enhanced magnetic resonance imaging and injecting contrast agent. The full shutter speed model (SSM.sub.full) is used to analyze every voxel in the tumor area and obtain the k.sub.io of them. This method significantly improves the accuracy of k.sub.io. The invention discloses the measuring method, system and application of k.sub.io as a magnetic resonance imaging biomarker of glioma, which is not for disease diagnosis, to evaluate the expression level of AQP4. The invention discloses the application of k.sub.io as a magnetic resonance imaging marker of glioma in the preparation of a product for predicting the sensitivity of glioma radiotherapy and chemotherapy. Through the above methods, systems and applications, the non-invasive and quantitative measurement and imaging of AQP4 expression level in glioma have been realized.
Claims
1-13. (canceled)
14. A measurement method of intracellular water transmembrane efflux rate, which is not for disease diagnosis, is used as a magnetic resonance imaging biomarker to evaluate the AQP4 expression level of glioma, where in, the measurement method is: (1) quantitatively measuring the intracellular water transmembrane efflux rate, by using dynamic-contrast-enhanced magnetic resonance imaging (DCE-MRI), that is k.sub.io; (2) using the framed stereotactic biopsy technology to get biopsy tissue and quantitatively measuring its AQP4 expression level; (3) according to k.sub.io and AQP4 expression level, establishing a linear relationship between k.sub.io and AQP4; and (4) quantitatively measuring the intracellular water transmembrane efflux rate of the tissue by using dynamic-contrast-enhanced magnetic resonance imaging (DCE-MRI), that is k.sub.io, and the AQP4 expression level of the tissue could be obtained according to the linear relationship in step (3).
15. The measurement method according to claim 14, wherein, the measurement method comprises the following steps: (1) setting dynamic-contrast-enhanced magnetic resonance imaging (DCE-MRI) scanning parameters, and measuring a noise level of obtained DCE-MRI data; (2) optimizing DCE-MRI scanning parameters by using monte Carlo simulation, and resetting a flip angle of DCE-MRI; (3) scanning a quantitative T1 imaging; (4) scanning a DCE-MRI and injecting the contrast agent; (5) analyzing each voxel in the tumor region by using the Full Shutter-Speed model (SSM.sub.full), and obtaining the intracellular water transmembrane efflux rate (k.sub.io); (6) according to the DCE-MRI, use the framed stereotactic biopsy technology to obtain biopsy tissue, and quantitatively measuring its AQP4 expression level; (7) doing linear regression analysis of k.sub.io and AQP4 expression levels, and obtaining the linear equation between AQP4 expression level and kin; and (8) for the tissue, repeating steps (3)-(5), converting k.sub.io images into AQP4-expression-level imaging according to the linear equation in steps (7) to obtain AQP4-expression-level imaging in tumor.
16. The measurement method according to claim 15, wherein the details in step (2) are as follows: one or more measured blood plasma contrast agent concentration C.sub.p are randomly selected, and then simulated DCE-MRI data at different flip angles is generated by using the parameters of human tissue and scanning parameters; the synthesized DCE-MRI time-series signal S(t) is generated by the SSM.sub.full, and the white noise, whose noise level is the same as the noise level estimated from human DCE-MRI data, is added to S(t); then noise-added S(t) are fitted by the nonlinear least sum of square algorithm using the SSM.sub.full; repeating the above steps and count the fitted k.sub.io for simulated DCE-MRI data at each flip angle; finally, the flip angle with the k.sub.io fitting result is closest to the simulated preset value and has the smallest variance is selected as the optimal flip angle; in the step (2), the spatial distribution of the actual flip angle should be measured to optimize flip angle in ultra-high field MRI; and in step (3), the quantitative T1 imaging is measured by multiple flip-angle and short repetition-time sequence.
17. The measurement method according to claim 15, wherein the details in step (5) are as follows: using automatic shutter speed analysis method to obtain the vessel contrast agent transfer coefficient (K.sup.trans) of each voxel in the tumor area, and only the voxels, whose K.sup.trans>0.01 min.sup.−1, are further fitted by SSM.sub.full model to obtain the intracellular water transmembrane efflux rate (k.sub.io).
18. The measurement method according to claim 15, wherein, the biopsy tissue AQP4 immunohistochemical image is obtained to quantify the tissue's AQP4 expression level in step (6).
19. The measurement method according to claim 15, wherein, the linear relationship between intracellular water transmembrane efflux rate (k.sub.io) and AQP4 expression level in step (7) is: AQP4-positive fraction=(k.sub.io−A)/B, where the range of A is 0.1-0.2 s.sup.−1 and the range of B is 13.07˜15.04 s.sup.−1.
20. The measurement method according to claim 14, wherein in evaluating AQP4 expression level, AQP4 expression level is evaluated through quantitative imaging of AQP4 expression.
21. The measurement method according to claim 20, wherein, the linear relationship between the intracellular water transmembrane efflux rate (k.sub.io) and AQP4 expression level is: cellular AQP4-positive fraction=(k.sub.io−A)/B, where the range of A is 0.1˜0.2 s.sup.−1 and the range of B is 13.07˜15.04 s.sup.−1.
22. The measurement method according to claim 14 in making a product for predicting the sensitivity of glioma radiotherapy and chemotherapy, wherein the intracellular water transmembrane efflux rate is used as a magnetic resonance imaging biomarker of glioma to the application for making product for predicting the sensitivity of glioma radiotherapy and chemotherapy.
23. The measurement method according to claim 22, wherein, the drug used in the radiotherapy and chemotherapy treatment is Temozolomide.
24. A measurement system for glioma magnetic resonance imaging biomarker, wherein, the measurement system comprises: an image extraction and processing module: quantitatively measuring tissue's intracellular water transmembrane efflux rate (k.sub.io) by using dynamic-contrast-enhanced magnetic resonance imaging (DCE-MRI); a post-processing module: establishing the linear relationship between the k.sub.io which is obtained from the image extraction and processing module and the AQP4 expression level of the biopsy tissue; and using the framed stereotactic biopsy technology to get biopsy tissue and quantitatively measuring its AQP4 expression level; a prediction module: obtaining the k.sub.io by using the image processing module, and using the linear relationship from post-processing module to predict the AQP4 expression level of tissue.
25. The measurement system for glioma magnetic resonance imaging biomarker according to claim 24, wherein the measurement system comprises: a preprocessing module: setting dynamic-contrast-enhanced magnetic resonance imaging (DCE-MRI) scanning parameters, and measuring the noise level of DCE-MRI data. Through Monte Carlo simulation, optimizing the flip angle of DCE-MRI and resetting the optimized flip angle; an image extraction module: scanning quantitative T1 imaging, scanning DCE-MRI and injecting contrast agent; an image processing module: analyzing each voxel in tumor region by using the Full Shutter-Speed model (SSM.sub.full), and obtaining the intracellular water transmembrane efflux rate of each voxel; a post-processing module: establishing the linear relationship between the k.sub.io obtained by the image processing module and the AQP4 expression level of biopsy tissue; and a prediction module: obtaining the k.sub.io by using the image extraction module and image processing module, and using the linear relationship from post-processing module to predict the AQP4 expression level of tissue.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE INVENTION
[0077] In order to make the purpose, technical scheme and advantages of the invention clearer, the technical scheme of the invention will be described clearly and completely in combination with the attached drawings.
[0078] As shown in
[0079] As shown in
[0080] Step 1: Setting the dynamic contrast enhanced magnetic resonance imaging parameters and measure the noise level during dynamic contrast enhanced magnetic resonance scanning. The specific steps are as follows:
[0081] (1) Adjusting the DCE-MRI sequence parameters in the scanner to set the Repetition Time (TR) to the shortest or near the shortest, such as 3 milliseconds.
[0082] (2) Adjusting the number of DCE-MRI sequence repeats for 10 min in a normal participant scan to count the noise level.
[0083] Step 2: as shown in
[0084] (1) A set of contrast agent concentration time curvesC.sub.p (t) or artificial simulations C.sub.p (t) were selected from the previous dynamic contrast enhanced magnetic resonance imaging data, given the initial physiological parameters: contrast agent exudation rate K.sup.trans=0.01 (per minute), vascular water molar fraction p.sub.b=0.05, interstitial water molar fraction p.sub.o=0.2, the steady-state water molecule cellular efflux rate constant k.sub.io=3 Hz from cell to interstitium, and the steady-state water molecule extravasation rate constant k.sub.bo=3 Hz.
[0085] (2) Setting the parameters to be optimized—the adjustment range of the flip angle is 1-40 degrees.
[0086] (3) Setting the simulated dynamic enhanced magnetic resonance parameters to be the same as the actual dynamic enhanced magnetic resonance imaging parameters (except for the flip angle)
[0087] (4) DCE-MRI time series signals are generated according to the three-chamber, two-exchange model (the model refers to the full shutter speed model SSM.sub.full model mentioned in the patent (patent number ZL 201910621579.6).
[0088] (5) Random white noise was applied to the signal, white noise of the same noise level was added according to the noise level estimated by DCE-MRI experiments, and nonlinear least squared fitting was performed on the full shutter speed model SSM.sub.full to S(t) based on the method in the patent (patent number ZL 201910621579.6).
[0089] (6) Repeating the procedure (3)-(5) 100 times, and count the standard deviation and median of the intracellular water transmembrane efflux rate k.sub.io under each replicate.
[0090] (7) Repeating the flow (3)-(6) until all sweep parameter combinations are traversed, and the k.sub.io fitting result is closest to the simulated preset value and the flip angle whose variance is least is the optimal flip angle.
[0091] Step 3: according to step 2, selecting the flip angle (as shown in
[0092] Step 4: Scanning quantitative T1 magnetic resonance imaging; The parameters are set as follows: [0093] Field of view (FOV):(340 mm).sup.2; slice thickness: 1.5 mm, 80 slices; voxel size 0.8×0.8×1.5 mm.sup.3; Echo time (TE)/TR=2.46 ms/5.93 ms; Flip angle (FA), 2°/14°; Bandwidth, 450 Hz/pixel.
[0094] Step 5: Scanning the dynamic enhanced magnetic resonance imaging and bolus injection of contrast agent begins at the eighth frame;
[0095] The DCE-MRI data acquired using 3D CAIPIRINHA-Dixon-TWIST were as follows: FOV=340×340×120 mm.sup.3; FA=10°; Bandwidth, 1090 Hz/pixel; TR, 6 ms; TE, 1.3 ms; and quickly inject contrast agent in the eighth frame after the start of scanning; Immediately after injection, another 15-20 ml of normal saline is injected, and the injection speed is recommended to be 2 ml per second.
[0096] Step 6: using the full shutter speed model SSM.sub.full, analysis on each voxel in the tumor region is performed, and obtain the intracellular water transmembrane efflux rate k.sub.io for each voxel. The detailed steps are as follows: [0097] (1) According to the phenomenon that the enhancement of the contrast agent in the tumor area is higher than that of normal tissue, the tumor area is manually delineated by professional doctors or personnel, or the tumor area is automatically obtained through artificial intelligence methods. [0098] (2) Obtaining dynamic contrast magnetic resonance images DCE-MRI time-series tumor region data in biological individuals blood contrast agent concentration time signal AIF. [0099] (3) According to the blood contrast agent concentration time signal in step (2), the nonlinear minimum sum of squares of the full shutter speed model-SSM.sub.full is fitted to the DCE-MRI time series signal of each voxel to obtain the DCE-MRI signal fitting results of each voxel in the tumor area, respectively. After the SSM.sub.full is fitted, the distribution map of five physiological parameters is generated, the five physiological parameters include: K.sup.trans, vascular water molar fraction p.sub.b, interstitial water molar fraction p.sub.o, steady-state water molecule extravasation rate constant k.sub.bo and the steady-state water molecule cellular efflux rate constant k.sub.io. [0100] (4) The error analysis was performed on the k.sub.io and k.sub.bo in step (3), leaving the voxel whose the 95% confidence interval in the [0 s.sup.−1 20 s.sup.−1] interval or the lower 95% confidence interval greater than 5 s.sup.−1, resulting in a distribution map of the final k.sub.io, k.sub.bo and K.sup.trans and p.sub.b, p.sub.o.
[0101] Steps 1 to 6 above are a dynamic contrast-enhanced magnetic resonance imaging method for quantitative measurement of k.sub.io, which can achieve the first inventive object of the present invention: the accuracy of k.sub.io is significantly improved.
[0102] Step 7: Using the biopsy planning system to obtain the best biopsy point coordinates according to the tumor k.sub.io image and clinical factors. The detailed steps are as follows: (1) 1-2 days before stereotactic biopsy, all patients need carry stereotactic frame on their heads for MRI structural image scanning.
[0103] (2) The calculated whole tumor region k.sub.io image according to the description in step 6 is registered and fused with the above structural image, and then imported into the stereotactic biopsy planning system for stereotactic biopsy planning.
[0104] (3) In the stereotactic biopsy planning system, 3D image reconstruction and surgery simulation are realized by calculating the target coordinates and the trajectory approach angle, and the coordinate entry point and the needle angle of the target in the cerebral cortex region are determined. In each patient, under the most favorable clinical factors, for example, the biopsy track should be designed to avoid entering through the groove, cortical artery, venous structure or ventricle. Multiple ROIs with different k.sub.io values were selected.
[0105] Step 8: Taking the biopsy tissue stereotactically and obtain the AQP4 immunohistochemical picture of the biopsy tissue to quantify the AQP4 expression level of the tissue: [0106] (1) The tissue samples of all biopsy points were obtained by three neurosurgeons through surgery according to the specified trajectory plan of the biopsy entry point and target point in the stereotactic procedure in step 7. Biopsy is performed under local or general anesthesia. The biopsy needle (inner diameter 2.0 mm, side cutting window 10 mm) is carefully and gently inserted into the target site, and the biopsy tissue samples are obtained clockwise (0°, 90°, 180°, 270°). [0107] (2) A 5-10 mm long specimen was obtained by stereotactic biopsy. Fix and embed the samples that need to undergo immunohistochemistry to obtain AQP4 expression distribution, and conduct AQP4 immunohistochemistry staining according to the routine immunohistochemistry steps. [0108] (3) Using a microscope to scan the high-resolution image of the whole section of AQP4 immunohistochemistry. [0109] (4) The digital process of the scanned image of AQP4 immunohistochemistry is as follows: First, calculate the ratio of the sum of AQP4 gray values of the whole section to the number of nuclei (AQP4mean). Secondly, in the immunohistochemical section, the region (ROI) with the strongest AQP4 staining intensity (that is, the region with the highest gray value of the image) is selected as the full positive expression region of AQP4. The ratio of the total gray value of AQP4 to the number of nuclei (AQP4max) in this region was calculated. Finally, the expression level of AQP4 at this biopsy point (i.e., the positive rate) was: (AQP4mean/AQP4max)*100%.
[0110] Step 9: Repeating steps 4 to 8 to obtain dynamic enhanced magnetic resonance images and stereotactic biopsy tissues of multiple glioma patients.
[0111] Step 10: Carrying out linear regression analysis on the AQP4 expression level and the average value of k.sub.io in all biopsy tissues to obtain the linear equation of AQP4 expression level and k.sub.io, that is, the cell positive rate of AQP4=(k.sub.io−0.2 s.sup.−1)/14.1 s.sup.−1. The specific steps are as follows:
[0112] 1. First of all, the magnetic resonance parameters (including k.sub.io value) of each stereotactic biopsy point in 19 patients (6 cases of WHO I-II, 13 cases of WHO of which 10 cases were recurrent gliomas) and the corresponding immunohistochemical results (i.e. AQP4 positive rate) of each stereotactic biopsy point in 45 biopsy point samples were counted one by one.
[0113] 2. Secondly, the linear fitting coefficient of each magnetic resonance parameter and AQP4 expression level was evaluated by linear regression analysis. The linear equation and 95% confidence interval of the expression level of the optimal linear correlation parameters k.sub.io and AQP4 were obtained.
[0114] 3. The final result is shown in
[0115] In addition, this method can also use machine learning algorithm to introduce multiple magnetic resonance parameters to establish AQP4 positive rate prediction model instead of linear regression analysis to further improve the prediction accuracy.
[0116] Step 11: According to the above linear equation, the k.sub.io image of each voxel in the tumor is converted into the AQP4 expression level image according to the linear formula to achieve non-invasive imaging of AQP4 expression in the tumor region.
[0117] Step 12: Repeating Step 4 to Step 6 and Step 11 for new glioma patients. Without further stereotactic biopsy, the spatial distribution of AQP4 expression in the tumor of the patient can be obtained only through magnetic resonance scanning and data analysis, as shown in
[0118] The measurement system of magnetic resonance imaging biomarker of glioma provided by the present invention includes:
[0119] Pre-processing module, performing steps 1, 2 and 3.
[0120] Image extraction module, performing steps 4 and 5.
[0121] Image processing module, performing step 6.
[0122] The post-processing module performs steps 10 and 11 in combination with steps 7, 8 and 9.
Prediction module, execute step 12.
[0123] In order to further verify the application of k.sub.io as a magnetic resonance imaging biomarker of gliomas in evaluating the expression level of AQP4 and in preparing products to predict the sensitivity of gliomas to radiotherapy and chemotherapy, the following experimental methods are adopted in the invention: Cell culture and TMZ construction of therapeutic resistance cell model
[0124] The glioma cell lines C6 and U87MG used in the invention originate from the American Typical Cell Depository Center (ATCC, HTB14 ™). Taking C6 cell culture as an example, the method is as follows: C6 cells are cultured in Dulbecco modified Eagle medium (DMEM, Sigma-Aldrich, D6429-500ML), which contains 10% fetal bovine serum (FBS, Biological Industries, 04-002-1A) and 1% penicillin and streptomycin double antibody (P/S, Gibco, Thermo Fisher Scientific, 10378016), that is, the complete medium. In a humidified incubator with 5% CO2+air, the temperature is 37° C. The culture medium was changed twice a week, and the cells were subcultured in the logarithmic growth phase (phase II).
[0125] C6 cells were treated with TMZ (50 μM) and treated with 50 μM TMZ dissolved in 0.1% DMSO (control group) or 0.1% DMSO in complete culture medium. The magnetic resonance parameters k.sub.io and physiological information (cell morphology, AQP4 expression, cell activity and cell migration distance) were obtained on the third and seventh days of TMZ (50 μM) treatment.
[0126] For primary cell cultures, glioma biopsy tissue was cut into 1 mm.sup.3 pieces and mixture with 10 ml Trypsin-EDTA (Gibco, 25200056) at 37° C. for 10-15 min until most pieces were digested into single-cell suspension. Then the cell suspensions were cultured using the same methods as the glioma cell lines.
Protocol for MRI Testing Cell Samples and Response Specific Inhibition Group
[0127] In order to obtain the cell samples for MRI, U87MG (0.5-1×10.sup.5) or C6 (1-2×10.sup.6) cell lines were first washed with DPBS, disassociated by adding 1 mL of 0.25% Trypsin-EDTA solution to 60 mm dish and incubating for 0.5 to 1.0 min, and then resuspended with 2 mL PBS (or PBS supplemented with 5 mM Gadoteridol). After centrifuging the cell sample with relative centrifugal force of 150 g at 4° C. for 5 min, the sample was resuspended in a custom MR compatible glass sample tube (diameter 5 mm×length 20 mm) with 250˜300 μL PBS (or PBS+5 mM Gadoteridol). We then centrifuged the MR tubes at 300 g at 4° C. for 2 min before carrying out MRI. For AQP4 inhibition experiments, cells were pre-cultured with 6.4 μM TGN020 (Axon, CAS 51987-99-6) dissolved in PBS for 15 mins or 1 mM ouabain (Sigma, CAS 11018-89-6) for 15 mins, respectively; the PBS in the above steps was replaced with PBS+inhibitor.
In Vitro Cell Culture Desktop MRI System for Measuring Cell k.SUB.io
[0128] The 0.5T desktop MRI measurement system for cell culture in vitro (Pure Devices GmbH, Germany) includes: the MRI system installed on the anti-vibration platform and the autonomous nuclear magnetic tube containing live cell precipitation from the incubator, 5% CO2+95% O.sub.2 and PBS supernatant to ensure high survival rate, and the temperature monitoring optical fiber is installed. All MRI measurements were performed at room temperature (23.5+/−1° C.).
[0129] Before water exchange DCE-MRI, diffusion weighted imaging (DWI) was performed to localize the cell layer that showed lower apparent diffusivity using the following parameters: single-slice acquisition, slice thickness=5 mm, FOV 12.8×12.8 mm.sup.2, matrix size 64×64 (zero-filled by a factor of two), 16 averages, and two b values at 10 s/mm.sup.2 and 2000 s/mm.sup.2. Water exchange DCE-MRI was performed with an inversion-recovery prepared turbo-spin-echo (IR-TSE) sequence and an extracellular Gd-based contrast agent, Gadoteridol (Prohance™ Bracco Diagnostics, Inc., Princeton, NJ). The following scan parameters were used in water exchange DCE-MRI: echo time (TE) 3 ms, turbo factor 16, FOV 12.8×12.8 mm.sup.2, matrix size 32×32. Water exchange DCE-MRI was performed with two CA concentrations, 0 and 5 mM. At [CA]=5 mM, IR-TSE were measured with 13 IR delays (10 ms, 30 ms, 50 ms, 70 ms, 90 ms, 150 ms, 200 ms, 400 ms, 600 ms, 800 ms, 1 s, 5 s, 5 s) with repetition time TR varying together (TR=IR delay+5 s) and single repetition on each IR delay. At [CA]=0 mM, the longest IR delays were extended to 10 s with TR extended simultaneously (TR=IR delay+10 s) to guarantee full recovery of the longitudinal magnetization in each TR. The scan time for a single acquisition at [CA]=0 mM and 5 mM is 10 min and 5.5 min, respectively. Two acquisitions on [CA]=5 mM were acquired and averaged.
[0130] IR-TSE signal (M) at each IR delay was taken as the average signal of the cell pellet ROI. Then the signal was subtracted and normalized by the equilibrium magnetization (Mo, taken as M with the longest IR delay). We define
[0131] A two-site-exchange (2SX) SS model was used here with details as described previously .sup.6. Briefly, the MR signal is considered as the sum of signals of two water sites—intra- and extracellular water, each site is assumed to have a similar longitude recovery rate R.sub.1, with p.sub.i and P.sub.o as the mole fraction of water molecules in the intra- and extracellular space, respectively, and p.sub.i+p.sub.o=1. Then the normalized IR-TSE signal M can be described with a biexponential function,
M=p.sub.smexp(−tR.sub.1,sm)+(1−p.sub.sm)exp(−tR.sub.1,lar) (2)
[0132] where R.sub.1,sm and R.sub.1,lar are the apparently smaller and larger R.sub.1, respectively, and p.sub.sm, is the apparent fraction of MR signals showing R.sub.1,sm. The three parameters, R.sub.1,sm, R.sub.1,lar and p.sub.sm, are determined by three physical parameters including p.sub.i, the intracellular water efflux rate constant (k.sub.io), and the R.sub.1 of intracellular water (R.sub.1i), and the CA-dependent extracellular water R.sub.1 (R.sub.1o). For each condition (e.g., C6 at TMZ 0, 3, and 7 day), at least three samples were measured with IR-TSE at [CA]=0 mM as the baseline data. In this study, Rh were pre-determined by fitting the IR-TSE signals acquired with two different CA concentration on more than three samples in each condition.
Immunofluorescence Staining, Visualization and Quantification of AQP4 In Vitro
[0133] After the MRI tests, the cell line sample was immediately fixed by 4% paraformaldehyde (PFA) at room temperature for 20 min, then stored in 0.5% PFA (4° C.). For immunofluorescence (IF) testing, protocols following: samples were (1) blocked with 10% goat serum (Beyotime, CO265) for one hour at room temperature; (2) incubated with primary antibody overnight at 4° C. and the secondary antibody at room temperature for 1 h; (3) stained with DAPI (4′,6-diamidino-2-phenylindole, Sigma-Aldrich, 1:1000) at room temperature for 5 min; and (4) washed three times with PBS. The antibody information is summarized in Supplementary Table 5. Fluorescence quantification were achieved with an Ultrafine Fluorescence Photometer (DFX, Denovix, Wilmington). Data were collected from two fluorescence channels: one in which DAPI was characterized with excitation/emission wavelengths 375 nm/435 to 485 nm and the other with either blue (excitation/emission 470 nm/514 to 567 nm) or green (excitation/emission 525 nm/565 to 650 nm) channels. Fluorescence images were taken from either a Fluorescence Inversion Microscope System (cellSensV1.13, Olympus, Japan) or a confocal laser scanning microscope (fv1200, Olympus, Japan).
Characterization of Cell Viability in TMZ Treatment
[0134] On the third and seventh days of TMZ or DMSO treatment, 1% CCK-8 (Cell Counting Kit-8, Beyotime, C0037) was added to the 96-well plate for cell viability determination. After incubation for 1 hour, the supernatant was used for the optical density test (e in
Cell Migration Assessment
[0135] The cells were cultured into monolayer cells, and a 300-500 μm wide strip scratch was drawn from the bottom of the cell culture dish with a standard 200 ill pipette. After incubation under corresponding conditions for 24 hours, the sample was fixed in 4% PFA for 30 minutes and stained with DAPI. Only cells in the scratch area are calculated for cell migration calculation.
Labeling and Classification of Fast Circulating Cells (FCC) and Slow Circulating Cells (SCC)
[0136] The present invention uses the method of cell tracer to distinguish FCC and SCC. The OG (Oregon Green 488 Carboxylic Acid Diacetate, Succinimidyl Ester) and CTV (CellTrace™ Violet reagent, ThermoFisher scientific, Invitrogen C34557) were used to distinguish FCCs (low OG or CTV intensity) and SCCs (high OG or CTV intensity, e.g., the CTV intensity>104) in C6 cell lines and human glioma primary cell culture, respectively. Populations of FCCs and SCCs were identified and isolated in cell cultures based on their capacity to retain OG or CTV. Briefly, the cells were first suspended in PBS containing 25 μM OG and incubated in the dark at 37° C. for 10 min. After incubation, cell samples were washed in DMEM to remove residual dye and then returned to the culturing medium for three days until imaging. Before fluorescence imaging, samples were fixed in 4% PFA for 30 min and then stained with DAPI. The fraction of SCCs was defined as the fraction of OG positive cells in the DAPI positive cells. For primary human glioma primary cell cultures, the cells were stained with 5 μM CTV (the same methods as OG) for three days. Then, the cells fluorescence intensity statistics and counts were measured by a Fluorescence Activating Cell Sorter System (FACS) (LSRFortessa X-20, BD, USA).
[0137] In addition, we also used EdU (5-Ethynyl-2′-deoxyuridine), a biomarker of cells proliferation by labelling the newly synthesized DNA, to label FCCs (high EdU) and SCCs (low EdU). C6 cells were harvested and incubated with 50 μM EdU solution (Cell-Light™ EdU Apollo567, Ribobio C10338-1, including EdU solution and Apollo fluorescent solution) at 37° C. for 2 hrs, and then AQP4 was labelled following the above IF protocol. After AQP4 staining, the samples were incubated in Apollo fluorescent solution for 30 min to fluorescently label EdU and then moved for FACS test.
[0138] The cell morphology and fluorescence image of the invention are taken from the fluorescence inverted microscope system (cellSensV1.13, Olympus, Japan) or the confocal laser scanning microscope (fv1200, Olympus, Japan).
Two Rat Models of Glioma and Magnetic Resonance Measurement Methods
[0139] All experimental protocols for animal studies were approved by the Animal Experimentation Committee of Zhejiang University. Adult (7-8-week-old) male Sprague Dawley (SD) rats were obtained from the Laboratory Animal Center of Zhejiang University. During glioma cell introduction, rats were anesthetized with a mixture of 2% (v/v) isoflurane in air (R500IE, RWD Life Science Co., Ltd,), and then 100 μl PBS containing 5×10.sup.6 C6 cells and 1% antibiotics (P/S) were slowly injected under the skin at the right leg. Seven to nine days after tumour implementation, the animals were taken for 7T MRI test and the tumour was quickly removed after and fixed for IHC after MRI.
[0140] For the orthotopic glioma model, similar protocol was followed except for that the C6 cell suspension (0.5×10.sup.5 cells/μl, 4-5 μl/rat, 2 μl/min) was injected into the right caudate putamen of brain using a 10 μl micro syringe at coordinates of 0.8 mm from the anterior arcuate suture, 2 mm to the right of the sagittal suture, and 4.5 mm deep. Two weeks after tumor implementation, the animals were taken for 9.4T MRI test and were fixed with 4% PFA immediately after MRI. The maximal tumor size permitted by the institutional review board is 4000 mm.sup.3 and this limit was not exceeded in this study.
Pharmacological Specific Inhibition of AQP4 in Rat Glioma Model
[0141] Here TGN020 was used to inhibit AQP4 in rat glioma model. For TGN020 group, each animal was treated with TGN020 (3 mg/kg, 4 ml/kg body weight) in the tail vein 15 minutes before water exchange DCE-MRI. In order to increase the solubility, before intravenous injection, TGN020 was repeatedly ultrasound and vortex at 37° C. to promote dissolution and dispersion in saline (0.9% NaCl). One day before TGN020 treatment, the same animal was treated with normal saline (4 ml/kg), and then water exchange DCE-MRI data collection was performed. In the control group, animals were treated with the same volume of normal saline on the first day and the second day. Here, the small volume infusion needs to be flushed after infusion to ensure the safety and treatment effect of rats.
Histology and Immunohistochemistry
[0142] IHC was performed on rat glioma using paraffin embedded sections. In short, rats were euthanized with 5% isoflurane immediately after the MRI experiment, and tumor tissue was fixed with 4% PFA for 24 h. Then, after carefully matching the tumor tissue with MRI data, cut the tissue section (about 4 μM thick) along the MRI scanning section. AQP4-IHC was incubated as follows: (1) with anti-AQP4 rabbit polyclonal antibody at 4° C. overnight, and (2) with the second goat antibody HRP (horseradish peroxidase) at room temperature for 1 hour. The nucleus was stained with hematoxylin. Finally, through the microscope slide scanning system (VS120, Olympus, Japan) x Full scan tissue sections at 20 magnification.
[0143] The quantitative analysis process of immunohistochemical atlas is as follows: First, the image is stained and separated in histological imaging through ImageJ (open source Fiji v1.53c, plug-in: Color deconvolution), and further analysis is performed using MATLAB2018 (MathWorks, Natick, MA, USA) to remove the background and quantify the number of nuclei and AQP4 staining (gray intensity). Then, calculate the average AQP4 gray intensity of all cells in each slide. At the same time, several ROIs with the highest AQP4 expression were selected from all slides and manually selected by two experienced pathologists, and were considered as 100% AQP4 positive (AQP4+). Finally, the AQP4+score in each slide is further calculated as the average AQP4 gray density in this slice, and the average gray density of AQP4+% in ROI is normalized. The quantification of IHC and AQP4 follows the double-blind principle.
Region of Interest (ROI) Selection for Rat Glioma Model
[0144] As most subcutaneous glioma tumours show a ring-shape of high-AQP4 expression, we used concentric donut-shape ROIs to divide both the MRI tumour regions and the corresponding histology images into six ROIs. First, we found the minimum rectangle enclosing the entire tumour and determined the rectangle centre coordinates (XR, YR), length LR, and width WR. Second, a series of concentric oval curves dividing the tumour into six ROIs were automatically drawn. The long axis (am) and short axis (bm) of concentric oval curves were calculated following,
where m was the serial number of each curve (increasing in value from the outer (m=1)) to the inner (m=6) and q=0.75.
Water-exchange DCE-MRI and stereotactic biopsy in human glioma. (Step 7: use the biopsy planning system to obtain the best biopsy point coordinates according to the k.sub.io image in the tumor and combined with clinical factors).
Downstream Molecular Experiment.
[0145] Specimens obtained with the stereotactic biopsy are usually small. Nevertheless, we did some modifications in our practice for processing specimens to fit for the full spectrum of histologic, immunocytochemical, and ultrastructural studies. The 5 to 10 mm long specimens, after being removed from the biopsy needle with fine tips, were then transferred to the laboratory on a saline-soaked glass bottle to avoid drying and facilitate tissue handling. Then the biopsy specimen was divided into small samples for different purpose, for example, one may be selected for frozen storage, and the second can also be fixed in glutaraldehyde for electron microscopy. The remainder of the specimens were separately fixed and embedded and processed for routine IHC and HE stain. This method allows the performance of special staining procedures and IHC studies on comparable, consecutive specimens. Each of the serial specimens is categorized in relationship to the specific stereotactic position with the specific k.sub.io value. After the tissue was histologically identified with glioma by the neuropathologists, the IHC and image analysis for AQP4 and ZEB1 were performed following similar IHC protocol as rat glioma model.
[0146] As for IEM, AQP4 was detected with the immunogold-silver labelling methods as the following step: (1) fix the biopsy tissues quickly in the IEM buffer (0.2% glutaraldehyde and 2% paraformaldehyde in PBS) for 2 h at room temperature and then in PBS with 50 mM glycine for 15 min at room temperature, (2) block and permeabilize the specimens with PBS with 5% goat serum, 1% Triton, and 1% fish collagen for 40 min, (3) incubate the sample with primary antibody made in PBS with 1% fish collagen at 4° C. overnight, (4) post-embed immunogold labelling by gold-conjugated secondary antibody in the PBS containing 1% goat serum and 1% Triton at 4° C. overnight, (5) perform silver-enhancement in the dark with the HQ Silver Enhancement Assay Kit (Nanoprobes, 2012-45ML) for visualizing AQP4 immunoreactivity, (6) rinse the sample several times with the deionized water before and after the sliver enhancement step, and (7) fix the immunolabelled specimens with 0.2% OSO4 in PBS for 2 h, stain the sample with 0.5% uranyl acetate in PBS for 1 h, dehydrate the sample in graded ethanol series, and then flat and embed the sample with Epon812 medium. Thereafter, the ultrathin sections (70 nm thickness) were observed under a Jeol-1200 electron microscope (JEOL Ltd., Tokyo, Japan).
The above experiments verify that:
k.SUB.io .can Accurately Detect the Dynamic Expression of AQP4 in C6 Cell Line During Temozolomide (TMZ) Treatment
[0147] In order to evaluate the ability of water-exchange DCE-MRI to detect the dynamic change of AQP4 expression level during TMZ treatment of glioma, the invention uses the above TMZ to incubate and induce C6 cells to construct a glioma treatment model. As shown in
[0148] The C6 cell lines in the control group had k.sub.io=10.9±0.7 s.sup.−1 (n=10, c in
[0149] Among them, the specific description of
[0150]
[0151]
[0152]
[0153] Quantitative K.sub.io Accurately Infers the Dynamic Regulation of AQP4 in Cell Proliferation Cycle
[0154] In order to evaluate the ability of the biomarker k.sub.io to detect the dynamic AQP4 regulation related to the proliferation of glioma cells, the present invention conducts SS-DCE-MRI measurement at different stages of the growth curve of U87MG, in which the cells show different proliferation states and different cell density and morphology in the cell proliferation curve (a in
[0155] In the quiescent phase and the decay phase (starting from 120 hours), the overall cell proliferation slows down. The expression level of AQP4 reached its peak in Phase II, decreased by 60.4% (p<0.0001) in Phase I, and decreased by 66.0% (p<0.05) in Phase III (b, c in
[0156] As shown in
[0157] Biomarker k.sub.io is Linearly Correlated with AQP4 Expression in C6 and U87M Cell Lines
[0158] In order to further evaluate k.sub.io's ability to quantify AQP4 expression, a direct correlation analysis was performed between k.sub.io and AQP4 expression (rfu value, see AQP4 fluorescence spectrophotometer for detection method). In
[0159] In vivo k.sub.io map obtained from water exchange DCE-MRI can accurately reveal the heterogeneity of AQP4 within and between tumors in rat glioma model
[0160] In order to further prove the accuracy of water exchange DCE-MRI in detecting AQP4 in vivo, C6 cell line was subcutaneously implanted into the right leg of Sprague Dawley (SD) rats to establish a glioma animal model. In vivo water exchange DCE-MRI is achieved through clinical use of Gd-based CA (dimethylamine gadolinate, Guangzhou, China). In order to better estimate k.sub.io, the invention uses the method of two injections of CA, which improves the accuracy of k.sub.io estimation by 10 times compared with the traditional method of single injection of contrast agent. In addition, the steady-state multi-gradient echo (MGE) sequence is used to overcome the potential T2* artifacts caused by contrast agents. Combined with numerical simulation, the MGE sequence parameters are optimized (for example, the optimal parameters: repetition time (TR)=100 ms and turning angle)(FA)=20°. Finally, the fitting error of SS model is carefully analyzed to remove k.sub.io with large fitting error. In conclusion, these steps ensure the accuracy of water exchange DCE-MRI in estimating k.sub.io in the physiological range ([0 s.sup.−1, 10 s.sup.−1]) (c in
[0161] As expected, for most tumor voxels, the in vivo SS model fits well. The k.sub.io diagram (d in
k.sub.io=10.5s.sup.−1*AQP4+%+0.4s.sup.−1
[0162] As shown in
[0163] When the average expression of k.sub.io and AQP4 in the whole tumor of each animal is used for analysis at the level of tumor, the linear relationship between k.sub.io and AQP4 expression still exists (h in
[0164] As shown in
[0165] The invention also constructs a glioma model in situ by implanting C6 cell line into the right caudate putamen of SD rats, and obtains water exchange DCE-MRI data. Because the tumor size in the glioma in situ model (a, b in
[0166] As shown in
Pharmacologically Specific Inhibition of AQP4 can Reduce k.SUB.io .in Rat Glioma Model
[0167] In order to further verify that water exchange DCE-MRI is a sensitive imaging method related to AQP4 expression in vivo, TGN020 was further used to specifically inhibit AQP4 function in rat subcutaneous glioma model. As shown in
[0168] As shown in
k.sub.io-Guided Stereotactic Biopsy of Human Glioma Further Verified the Linear Correlation Between k.sub.io and AQP4 Expression
[0169] Water exchange DCE-MRI revealed the intratumoral heterogeneity of k.sub.io in human gliomas by injecting clinically approved contrast agent (Gd-DTPA, 0.1 mmol/kg body weight). The invention aims to use k.sub.io instead of AQP4 spatial distribution to guide stereotactic biopsy. It is well known that brain transfer during surgery may affect the sampling accuracy of frameless neural navigation technology. This is unlikely to affect the spatial accuracy of radiopathology correlation. The invention avoids the influence of brain metastasis from preoperative MRI to tumor sampling time through frame stereotactic biopsy technology. Therefore, it is expected that the quantitative analysis of k.sub.io images and biopsy samples will produce highly reliable evaluation, which will allow accurate interpretation of radio-histopathology related results at the voxel level.
[0170] The present invention belongs to observational research, and has been approved by the Institutional Review Committee (IRB) of Shandong Provincial Hospital Affiliated to Shandong First Medical University, with the written informed consent of each subject. From May 2019 to August 2021, 21 suspected glioma patients were recruited according to the IRB inclusion criteria (histology and molecular diagnosis were confirmed by biopsy), and Leksell was used® Model G Stereotactic Frame System (Elekta AB, Stockholm, Sweden). Before biopsy, water exchange DCE-MRI was performed to obtain k.sub.io map (c in
[0171] The typical K.sup.trans and k.sub.io parameters of the same section of a patient are shown in b and c in
k.sub.io=14.1s.sup.−1×AQP4+%+0.2s.sup.−1
[0172] This shows that the k.sub.io associated with AQP4 (14.9 s.sup.−1) is much larger than that associated with non-AQP4 (that is, k.sub.io baseline, 0.2 s.sup.−1), and in human gliomas, k.sub.io is mainly controlled by the pathway regulated by AQP4. This linear relationship between the expression of k.sub.io and AQP4 still exists in multiple biopsy samples collected for the same patient, as shown in f in
[0173] As shown in
[0174]
[0175] As shown in
[0176] In summary, the above experiments from the level of cultured cells in vitro, the animal level of two rat models of glioma in vivo and the clinical cases of human glioma cases show that k.sub.io is a powerful and sensitive imaging biomarker of AQP4 in human glioma.
Low k.SUB.io .Reflects the Treatment Resistance of Glioma
[0177] The recurrence of glioma is common after radiotherapy. We found that the cells with low k.sub.io (i.e. low AQP4) may represent the cell subtype of treatment resistance in glioma. Careful observation of C6 nuclear image texture after TMZ treatment showed that some cells showed nuclear damage after TMZ treatment, while others showed basically complete and uniform nuclear structure, indicating that these cell subtypes have resistance to nuclear damage type anticancer drug TMZ (a in
[0178] (Oregon Green (OG) for C6 cell line and CellTrace Violet (CTV) for human glioma primary cells) to label the positive cells (OG+ and CTV+). Because SCC does not undergo division and proliferation, it retains more OG and CTV fluorescent dyes, which presents a bright image under the microscope. On the third and seventh days of TMZ treatment, the proportion of SCC increased from 6.0 (±0.4)% before TMZ treatment to 16.0 (±0.1)% (p<0.0001) and 28.9 (±0.3)% (d in
[0179] More importantly, the use of the biomarker ZEB1 (zinc finger enhancer binding protein 1, a transcription factor that regulates DNA damage) further characterizes the anti-treatment status of clinical glioma biopsy samples (the immunohistochemical method and quantitative method are the same as AQP4). ZEB1 has been used as a biomarker of glioma treatment-resistance. We found that the lower k.sub.io biopsy samples of recurrent gliomas had higher ZEB1 expression than the biopsy samples of higher k.sub.io from the same subject (f in
[0180] As shown in
[0181] TMZ can inhibit the proliferation of glioma cells by inducing DNA double strand breaks, and kill the FCC subtype and retain the SCC subtype. TMZ treatment of C6 cell line revealed similar phenomena, including decreased proliferation and increased SCC score. In addition, the cell subtypes with low AQP4 expression level and long tail or pseudopodium morphology on the 7th day of TMZ are often considered as stem cell-like cells (GSCs) in GBM that are resistant to treatment. Similarly, the U87MG cell line also showed decreased proliferation and down-regulation of AQP4 during the quiescent and decaying stages of nutrition and oxygen deprivation. In these two microenvironments, k.sub.io obtained from water exchange DCE-MRI is closely related to the dynamic regulation of AQP4. In TMZ treatment (C6) and quiescent —proliferative reduction stage (U87MG), it was observed that the proportion of SCC with lower AQP4 expression level increased. This phenomenon is reasonable because SCC is a low proliferative cell subtype, and the expression level of AQP4 is related to cell proliferation. More importantly, low AQP4 expression can protect SCC from TMZ or other therapies by slowing down the transmembrane transport rate. In fact, C6 cell lines with low AQP4 expression were observed to have no or little nuclear damage under TMZ treatment, indicating their anti-TMZ status. In addition, low k.sub.io (i.e. low AQP4) biopsy samples from human glioma also showed higher expression of ZEB1, an anti-treatment biomarker, and a higher proportion of SCC. In general, these results show that k.sub.io is a potential method for SCC imaging and prediction of treatment response.
[0182] The spatial and temporal heterogeneity of AQP4 expression profile in glioma has great potential in promoting precise treatment and predicting treatment response. Since the expression of AQP4 is related to the degree of treatment resistance, the heterogeneity of k.sub.io may indicate the difference of treatment resistance in glioma region. This AQP4 expression profile has great potential in evaluating the pathological status of recurrent gliomas, and further affects the treatment strategy, resulting in many alternative methods for the treatment of recurrent gliomas. For example, if recurrent gliomas show high levels of k.sub.io, the second radiotherapy and chemotherapy are preferred, because the high level of AQP4 expression indicates that tumor cells are sensitive to radiation and chemotherapy damage. Or, if low level of k.sub.io is measured, surgical intervention is preferred, because these tumor cells have strong resistance to radiotherapy or chemotherapy.
[0183] The present invention can accurately measure the heterogeneity of AQP4 within and between gliomas by using water exchange DCE-MRI to specifically and quantitatively measure the rate constant k.sub.io of intracellular transmembrane outflow, as an MRI biomarker sensitive to the expression level of AQP4. In previous studies, ADC from DWI also showed sensitivity to AQP4 silencing through RNA, but later results questioned this result. It is well known that water exchange may contribute to ADC, but the use of ADC in vivo lacks the specificity of transmembrane water exchange detection, and there are many possible biophysical mechanisms to induce ADC changes, including cell swelling or contraction, cell density and shape changes, and the shape of the gap, and there are more problems. Specifically, it has been proved that ADC mainly reflects the cell density in human glioma, which further hinders the use of ADC as a specific biomarker of water exchange in glioma.
[0184] In clinical practice, water-exchange DCE-MRI can be used together with conventional MRI scanning for glioma diagnosis by adding water-exchange DCE-MRI sequence during contrast agent (CA) injection without additional capital or time cost. In addition, conventional MRI can also be used to identify the tumor part of glioma from normal tissues or other tissues, so as to further analyze intratumoral AQP4 in water exchange DCE-MRI. The water-exchange DCE-MRI scanning scheme used in the invention can be further optimized to improve the accuracy of k.sub.io estimation and AQP4 detection, because individual differences can still be observed in rats (
[0185] Aquaporin 4 (AQP4) plays an important role in the fate of glioma, including tumor migration, proliferation and treatment resistance. Tissue biopsy can quantitatively characterize the expression level of AQP4 in vivo, but it cannot provide information about the heterogeneous distribution of AQP4 in the whole tumor. The invention provides a non-invasive magnetic resonance biomarker k.sub.io to detect and map AQP4 in glioma in vivo as a biomarker sensitive to the expression level of AQP4. AQP4 can be seen in MRI by quantitatively measuring the transmembrane water exchange regulated by AQP4. It is the first time to prove that AQP4 is the main way to regulate transmembrane water exchange, and k.sub.io is a sensitive biomarker of AQP4 expression in glioma. Then it demonstrated the precise detection ability of water-exchange DCE-MRI in various stages of glioma proliferation, temozolomide TMZ (clinical anticancer drug) treatment, gene knockout and TGN020 inhibition of AQP4 and other AQP4 expression and functional dynamic changes, and captured the spatial heterogeneity of AQP4 expression in rat glioma model and human glioma. In addition, low k.sub.io cells showed higher therapeutic resistance, indicating that AQP4 map has potential value in evaluating the therapeutic resistance of glioma. More importantly, this method can easily diagnose and evaluate glioma by radiology on the whole tumor MRI. This technology will significantly improve the accurate evaluation and treatment of human glioma.
[0186] The above specific implementation mode has described the technical scheme and beneficial effects of the invention in detail. It should be understood that the above is only the preferred embodiment of the invention and is not used to limit the invention. Any modification, supplement and equivalent replacement made within the scope of the principles of the invention should be included in the scope of protection of the invention.