AN ENZYME-POLYMER MATRIX

Abstract

The present invention relates to a bioreactor for the catalytic conversion of a substrate to a product using an immobilized enzyme. The immobilized enzyme is a histidine tagged enzyme, which binds to a nickel-nanoparticle coated cellulose matrix which is housed within the bioreactor. The invention also relates to methods of producing products by enzymatic catalysis using the bioreactor of the invention.

Claims

1. An enzyme-polymer conjugate, comprising: a histidine tagged enzyme, and a cellulose matrix, wherein the cellulose matrix is coated with a nickel-nanoparticle, wherein the nickel-nanoparticle is prepared by combining a NaBH.sub.4 solution and a NiCl solution; and further wherein the histidine tagged enzyme is immobilized on the cellulose matrix through the formation of a coordinate covalent bond between the histidine tag and the nickel-nanoparticle.

2. The conjugate of claim 1, wherein the enzyme is selected from the group consisting of α-acetolactate, α-arabinosidase , α-galactosidase, a-rhamnosidase, β-galactosidase, β-glucanase, β-glucosidase, β-glucanase, β-mannanase, γ-lactamase, acetolactate decarboxylase, activase, adenosine deaminase, aminoacylase, aminopeptidase, amylase, amyloglucosidase, asparginase, aspartase, bromelain, carbonic anhydrase, catalase, cellulase, chitinase, chymosin, collagenase, cyclodextrinase, deoxyribonuclease I, dextranase, epimerase, esterase, formate dehydrogenase, galactinol synthase, glucanotransferase, glucoamylase, glucose isomerase, glucose oxidase, glutenase, hemicellulase, hexose oxidase, inulinase, invertase, laccase, lactase, lactate dehydrogenase, leucine dehydrogenase, levanase, lipase, lipoxygenase, lysozyme, methane monooxygenase, monoamine oxidase, muramidase, naphthalene dioxygenases, naphthalene monooxygenase, naringinase, nattokinase, nitrile hydratase, papain, pectinase, pectinesterase, penicillin G acylase, pentosanase, phenoloxidases, phenylalanine dehydrogenase, phytases, polyethylesterase, polygalacturonase, protease, protopectinase, pullulanase, raffinose synthase, rennet, sacrosidase, serratiopeptidase, sphingosine kinase, stachyose synthase, tannase, taxolase, thermolysin, transaminase, transaminase, transglutimases, trypsin, urease, xylanase, and xylose isomerase.

3. The conjugate of claim 1, wherein the cellulose matrix is cotton.

4. The conjugate of claim 3, wherein the cotton is cotton wool.

5. The conjugate of claim 1, wherein the histidine tag is a deca-histidine tag.

6. The conjugate of claim 1, wherein the histidine tag is on the N-terminal of the enzyme.

7. The conjugate of claim 1, wherein the histidine tag is on the C-terminal of the enzyme.

8. The conjugate of claim 1, wherein the enzyme catalytically converts a substrate into a product.

9. The conjugate of claim 1, wherein the immobilized enzyme has enhanced catalytic activity relative to an enzyme in free solution.

10. The conjugate of claim 1, wherein the NaBH.sub.4 is a solution comprising 10 mM NaBH.sub.4 in 0.2% w/v NaOH.

11. The conjugate of claim 1, wherein the NiCl is a solution comprising 5 mM NiCl.

12. A method of converting a substrate to a product, the method comprising contacting the substrate with the conjugate of claim 1.

13. A bioreactor comprising: a fluid distribution chamber, having an inlet and an outlet, a conjugate of claim 1, contained within the fluid distribution chamber, wherein the histidine tagged enzyme is immobilized on the nickel nanoparticle cellulose matrix through the formation of a coordinate covalent bond between the histidine tag and a nickel nanoparticle bound to the cellulose matrix.

14. The bioreactor of claim 13, wherein a fluid containing a substrate is passed into the fluid distribution chamber through the inlet.

15. The bioreactor of claim 14, wherein the substrate is converted to a product by the enzyme.

16. The bioreactor of claim 15, wherein the product is recovered from the fluid distribution chamber from the outlet.

17. The bioreactor of claim 14, wherein the fluid contains a cofactor to enhance the activity of the histidine tagged enzyme.

18. The bioreactor of claim 17, wherein the cofactor is an organic or inorganic compound.

19. A method for producing a product by enzyme catalysis, the method comprising: introducing a fluid containing a substrate to a bioreactor comprising a fluid distribution chamber, wherein the fluid distribution chamber includes a conjugate of claim 1, wherein the substrate is converted to a product by means of enzyme catalysis after coming into contact with the immobilized histidine tagged enzyme; and recovering the product from the bioreactor.

20. The method of claim 19, wherein the product is recovered from the fluid distribution chamber from an outlet.

21. The method of claim 19, wherein the fluid contains a cofactor to enhance the activity of the histidine tagged enzyme.

22. The method of claim 21, wherein the cofactor is an organic or inorganic compound.

Description

BRIEF DESCRIPTION OF THE FIGURES

[0045] Non-limiting embodiments of the invention will now be described by way of example only and with reference to the following figures:

[0046] FIG. 1: Representation of the present bioreactor. The substrate for the reaction is transported through the flow cell via a peristaltic pump, the immobilized enzyme then catalyses the formation of the product which then leaves the flow cell. This reaction is cyclic and the substrate-product media is continuously passed through the enzyme matrix until all available substrate is consumed.

[0047] FIG. 2: Microscope image of the nanocoated cellulose substrate that makes up the porous 3D matrix in which the enzymes are immobilized and the biochemical reaction takes place.

[0048] FIG. 3: Representation of the oriented enzyme immobilization strategy as described herein.

[0049] FIG. 4: Representation of the enzyme immobilization procedure compared to commercial competitors.

[0050] FIG. 5: Green fluorescent protein immobilized onto the surface of the NP coated cotton wool. This shows that a histidine-tagged protein can be immobilized to the surface of the cotton-NP matrix and remain in its active conformational shape.

[0051] FIG. 6: The hydrolysis of pNP-B-glucopyranoside by immobilized beta-glucosidase releases the compound pNP, this changes the colouration of the media from clear to yellow. This experiment demonstrates that enzymes can be immobilized to the matrix and perform their biochemical reactions, thereby remaining active after immobilization.

[0052] FIG. 7: The hydrolysis of pNP can be colorimetrically measured using a spectrometer.

[0053] FIG. 8: Effect of electrostatic and hydrophobic immobilization techniques on the conformational structure of an enzyme. The change in native protein structure significantly reduces the enzymatic efficiency of the protein.

[0054] FIG. 9: An example of a cascade enzyme reaction using three different enzymes: galactinol synthase, raffinose synthase and stachyose synthase. The precursor for the reaction is UDP-galactose which eventually Is synthesized into stachyose through the stepwise reaction.

[0055] FIG. 10: Nucleic acid sequence encoding green fluorescent protein (SEQ ID NO:1).

[0056] FIG. 11: Amino acid sequence of the green fluorescent protein (SEQ ID NO:2).

[0057] FIG. 12: Nucleic acid sequence encoding the β-glucosidase protein (SEQ ID NO:3).

[0058] FIG. 13: Amino acid sequence of the β-glucosidase protein (SEQ ID NO:4).

[0059] FIG. 14: Nucleic acid sequence encoding the galactinol synthase protein (SEQ ID NO:5).

[0060] FIG. 15: Amino acid sequence of the galactinol synthase protein (SEQ ID NO:6).

[0061] FIG. 16: Nucleic acid sequence encoding the raffinose synthase protein (SEQ ID NO:7).

[0062] FIG. 17: Amino acid sequence of the raffinose synthase protein (SEQ ID NO:8).

[0063] FIG. 18: Nucleic acid sequence encoding the dextranase protein (SEQ ID NO:9).

[0064] FIG. 19: Amino acid sequence of the dextranase protein (SEQ ID NO:10).

[0065] FIG. 20: Nucleic acid sequence encoding the laccase protein (SEQ ID NO:11).

[0066] FIG. 21: Amino acid sequence of the laccase protein (SEQ ID NO:12).

[0067] FIG. 22: Nucleic acid sequence encoding the carbonic anhydrase protein (SEQ ID NO:13).

[0068] FIG. 23: Amino acid sequence of the carbonic anhydrase protein (SEQ ID NO:14).

[0069] FIG. 24: Nucleic acid sequence encoding the catalase protein (SEQ ID NO:15).

[0070] FIG. 25: Amino acid sequence of the catalase protein (SEQ ID NO:16).

[0071] FIG. 26: Nucleic acid sequence encoding the lysozyme protein (SEQ ID NO:17).

[0072] FIG. 27: Amino acid sequence of the lysozyme protein (SEQ ID NO:18).

[0073] FIG. 28: Standardized nickel nanoparticle synthesis. Standard curve measured at a wavelength of 550 nm for the absorption of nickel nanoparticles. Nickel nanoparticles were synthesized using standard concentrations of NaBH.sub.4 (10 mM, 20 mM, and 40 mM) and respective standard concentrations of NiCl (5 mM, 10 mM, and 20 mM).

[0074] FIG. 29: Degrees of polymerization of nickel particles. Field emission scanning electron microscopy (FE-SEM) images of the (A) 10 mM, (B) 20 mM, and (C) 40 mM NaBH.sub.4 samples of undispersed nickel nanoparticle colloids. The observed degree of polymerization is directly proportional to the concentration of substrates (NaBH.sub.4 and NiCl) in the reduction reaction. Images were prepared at CAF, Stellenbosch University, using a Zeiss Merlin™ FE-SEM. Scale is set to represent a length of 500 nm. Brightness=52%. Contrast=28%.

[0075] FIG. 30: Dispersed nickel nanoparticles. Field emission scanning electron microscopy (FE-SEM) images of dispersed nickel nanoparticles from the 10 mM NaBH.sub.4 colloid sample. Nanoparticles were resuspended in ethanol with 10% ethylene glycol, and dispersed using an ultrasonic water bath. (A) Independent nickel particle of approximately 300-500 nm in diameter. (B) Dispersed nickel nanoparticles of approximately 150 nm in diameter. Images were prepared at CAF, Stellenbosch University, using a Zeiss Merlin™ FE-SEM. Scale is set to represent a length of 300 nm. Brightness=52%. Contrast=28%.

[0076] FIG. 31: GFP immobilization to nickel nanoparticles. (A) Bright field microscopic image of nickel nanoparticles of the 10 mM colloid. (B) Fluorescent light microscopic image with GFP filter of corresponding nickel nanoparticles presenting immobilized GFP. Images were captured by the Zeiss Axiocam at 40× magnification and analysed using the Zen 2 computer software.

[0077] FIG. 32: Extended protein stability on nickel nanoparticles. Matching samples as taken in FIG. 31 were stored at room temperature for two weeks, with subsequent microscopic analysis. (A) Bright field microscopic image of a nickel nanoparticle of the 10 mM colloid. (B) Fluorescent light microscopic image with GFP filter of the corresponding nickel nanoparticle presenting immobilized GFP. Images were captured by the Zeiss Axiocam at 40X magnification and digitally analysed using the Zen 2 computer software.

SEQUENCE LISTING

[0078] The nucleic acid and amino acid sequences listed in the accompanying sequence listing are shown using standard letter abbreviations for nucleotide bases, and the standard three letter abbreviations for amino acids. It will be understood by those of skill in the art that only one strand of each nucleic acid sequence is shown, but that the complementary strand is included by any reference to the displayed strand. In the accompanying sequence listing:

[0079] SEQ ID NO:1—nucleic acid sequence encoding green fluorescent protein.

[0080] SEQ ID NO:2—amino acid sequence of the green fluorescent protein.

[0081] SEQ ID NO:3—nucleic acid sequence encoding the β-glucosidase protein.

[0082] SEQ ID NO:4—amino acid sequence of the β-glucosidase protein.

[0083] SEQ ID NO:5—nucleic acid sequence encoding the galactinol synthase protein.

[0084] SEQ ID NO:6—amino acid sequence of the galactinol synthase protein.

[0085] SEQ ID NO:7—nucleic acid sequence encoding the raffinose synthase protein.

[0086] SEQ ID NO:8—amino acid sequence of the raffinose synthase protein.

[0087] SEQ ID NO:9—nucleic acid sequence encoding the dextranase protein.

[0088] SEQ ID NO:10—amino acid sequence of the dextranase protein.

[0089] SEQ ID NO:11—nucleic acid sequence encoding the laccase protein.

[0090] SEQ ID NO:12—amino acid sequence of the laccase protein.

[0091] SEQ ID NO:13—nucleic acid sequence encoding the carbonic anhydrase protein.

[0092] SEQ ID NO:14—amino acid sequence of the carbonic anhydrase protein.

[0093] SEQ ID NO:15—nucleic acid sequence encoding the catalase protein.

[0094] SEQ ID NO:16—amino acid sequence of the catalase protein.

[0095] SEQ ID NO:17—nucleic acid sequence encoding the lysozyme protein.

[0096] SEQ ID NO:18—amino acid sequence of the lysozyme protein.

DETAILED DESCRIPTION OF THE INVENTION

[0097] The present invention will now be described more fully hereinafter with reference to the accompanying drawings, in which some, but not all embodiments of the invention are shown.

[0098] The invention as described should not be limited to the specific embodiments disclosed and modifications and other embodiments are intended to be included within the scope of the invention. Although specific terms are employed herein, they are used in a generic and descriptive sense only and not for purposes of limitation.

[0099] As used throughout this specification and in the claims which follow, the singular forms “a”, “an” and “the” include the plural form, unless the context clearly indicates otherwise.

[0100] The terminology and phraseology used herein is for the purpose of description and should not be regarded as limiting. The use of the terms “comprising”, “containing”, “having” and “including” and variations thereof used herein, are meant to encompass the items listed thereafter and equivalents thereof as well as additional items.

[0101] According to a preferred embodiment, as illustrated in FIG. 1, a bioreactor (10) comprises a fluid distribution chamber (12), having an inlet (20) and an outlet (22). The fluid distribution chamber (12) is filled with a nickel nanoparticle coated cellulose matrix (14) comprising a histidine tagged fusion protein. The histidine tagged fusion protein is immobilized on the nickel nanoparticle coated cellulose matrix (14) through the formation of a coordinate covalent bond between the histidine tag and the nickel nanoparticles which are bound to the cellulose matrix (14).

[0102] A fluid containing a substrate is passed into the fluid distribution chamber (12) through the inlet (20). The substrate is converted to a product by the fusion protein through enzymatic catalysis of the substrate by the fusion protein. It will be appreciated that the fusion protein consists of a histidine tag fused to an enzyme. The enzyme catalyses the reaction to convert the substrate to the product. The histidine tag may be a 4x, 5x, 6x, 7x, 8x, 9x, 10x, 11x, 12x, 13x, 14x or 15x histidine tag. Preferably, the histidine tag is a 6x or 10x histidine tag.

[0103] The enzyme may be any enzyme used in an industrial processes and includes, but is not limited to and enzyme selected from the group consisting of α-acetolactate, α-arabinosidase, α-galactosidase, a-rhamnosidase, β-galactosidase, β-glucanase, β-glucosidase, β-glucanases, β-mannanase, γ-lactamase, acetolactate decarboxylase, activase, adenosine deaminase, aminoacylase, aminopeptidase, amylases, amyloglucosidase, asparginase, aspartase, bromelain, carbonic anhydrase, catalase, cellulase, chitinase, chymosin, collagenase, cyclodextrinase, deoxyribonuclease I, dextranase, epimerase, esterases, formate dehydrogenase, galactinol synthase, glucanotransferase, glucoamylase, glucose isomerase, glucose oxidase, glutenases, hemicellulases, hexose oxidase, inulinase, invertase, laccase, lactase, lactate dehydrogenase, leucine dehydrogenase, levanase, lipase, lipoxygenase, methane monooxygenase, monoamine oxidase, muramidase, naphthalene dioxygenases, naphthalene monooxygenase, naringinase, nattokinase, nitrile hydratase, papain, pectinase, pectinesterase, penicillin G acylase, pentosanase, phenoloxidases, phenylalanine dehydrogenase, phytases, polyethylesterase, polygalacturonase, proteases, protopectinase, pullulanase, raffinose synthase, rennet, sacrosidase, serratiopeptidase, sphingosine kinase, stachyose synthase, tannase, taxolase, thermolysin, transaminase, transaminase, transglutimases, trypsin, urease, xylanase, xylose isomerase.

[0104] Most preferably, the enzyme is selected from the group consisting of green fluorescent protein (SEQ ID NO:2), β-glucosidase (SEQ ID NO:4), galactinol synthase (SEQ ID NO:6), raffinose synthase (SEQ ID NO:8), dextranase (SEQ ID NO:10), laccase (SEQ ID NO:12), carbonic anhydrase (SEQ ID NO:14), catalase (SEQ ID NO:16) and lysozyme (SEQ ID NO:18). It will be appreciated that once cloned into the relevant vector, the expressed protein will contain a histidine tag. It will further be appreciated by those of skill in the art that any histidine-tagged enzyme could be used as the enzyme in the enzyme polymer conjugate.

[0105] The product that is produced by the enzymatic reaction between the substrate and the immobilized enzyme can be harvested from the fluid distribution chamber via the outlet (22).

[0106] The cellulose matrix (14) is preferably a cotton matrix, most preferably the cotton matrix is cotton wool.

[0107] The histidine tag of the fusion protein may either be included on the N-or the C-terminal of the protein.

[0108] It will be appreciated that cofactors that are required to improve enzyme catalysis may be introduced into the fluid distribution chamber (12) in the fluid. It will further be appreciated that the cofactor may be an organic or inorganic cofactor.

[0109] The present invention relates to a bioreactor comprising functionally immobilized enzymes on a three-dimensional, microporous cellulose matrix for use in the in vitro organic synthesis of commodity metabolites (antibiotics, antidepressants, food additives, etc), as a treatment device in the beverage and wine industry, and a device to aid in water purification.

[0110] The device consists of four main components (FIG. 1). These segments are the modular flow cell, porous cellulose matrix, nanoparticle capture agent and the immobilized enzyme. The flow cell has two major functions, it serves to house all other components in a compact form and allows for the flow of substrate through the enzymatically active matrix, thus serving as a self-contained reaction vessel. Additionally, due to its modular design it can be arranged in series with other flow cell modules to couple multienzyme reactions together, while keeping the proteins separated. Thus, allowing different reaction conditions to be set up within a single reaction system (i.e. temperature, flow rate, pH, substrates).

[0111] The second component is the porous cellulose matrix. This component is housed within the flow cell and is the solid, three dimensional support which the enzymes will be immobilized on and the substrate media passed through. It is therefore the site in which the biochemical reactions will occur. It is solely composed of a uniform mass of simple commercial cotton wool that is treated with the nanoparticle capture agent. Cotton wool is used as an immobilization matrix as it is an abundant and low-cost material. Additionally, cotton wool is inert and stable across a range of conditions.

[0112] The third component is the nanoparticle capture agent. Nickel has traditionally been used for the purification of proteins due to its affinity and binding to histidine residues contained within proteins. Nickel-histidine binding has been utilized for decades in commercially available nickel-nitrilotriacetic acid (Ni-NTA) agarose columns. Ni-NTA columns are used for the purification of proteins from expression media in a laboratory setting. They are not suitable for use as a platform for in vitro organic synthesis of compounds or coupled to industrial processes. This is due to the fact that the columns tend to be very expensive. Further agarose is generally used as the matrix in these columns and the density of the agarose makes it difficult for complex substrate media to be passed through it. In the present invention the inventors have adapted the affinity that nickel has for histidine in a novel approach.

[0113] Nickel nanoparticles are produced via a novel synthesis method developed for the purpose of enzyme immobilization on the cellulose substrate. Briefly, NiCl.sub.2 is reduced using NaBH.sub.4 under heat in a non-aqueous environment to yield Ni° nanoparticles (hereinafter NPs). The NPs have the ability to bind to histidine residues present in the proteins. Additionally, the NPs have certain attributes that NiCl.sub.2 does not possess, which makes it preferable for use in a modular reactor. The inventors have found that the NPs are capable of permanently coating the cellulose matrix, thus conferring the ability to bind histidine to the cotton wool and allowing the catalytic proteins to be immobilized on the cellulose matrix. Additionally, the NPs are paramagnetic and can be collected from the solution using a simple neodymium magnet. The most significant advantage of this strategy is that the system can only immobilize specific desirable proteins that contain an engineered affinity tag.

[0114] The benefits of using the novel method of nickel nanoparticle synthesis disclosed herein are (i) the use of a low temperature reaction environment for the production of the nickel nanoparticles, (ii) the lack of a solvent as a reaction substrate, (iii) the lack of a chemical reflux step, (iv) the use of only two primary substrates, and (v) the resulting stability of the synthesized nanoparticles.

[0115] The final component is the enzyme catalyst itself. These proteins perform the biochemical reaction of the system and are irreversibly immobilized onto the surface of the cellulose matrix. Nucleic acids encoding the enzymes of interest were ligated into a histidine-tagged vector system. Other enzyme immobilization technologies immobilize enzymes based on functional groups present on the exterior of the enzyme, whereas in the present invention a user can immobilize any enzyme that contains a histidine-tag.

[0116] The enzymes used in this process are engineered to contain a histidine tag, preferably a deca-histidine tag (10x-his) on the N or C-terminal end of the proteins. The histidine tag present on the end of the protein is captured by the NP-coated cellulose matrix and the proteins are immobilized to the cellulose platform via their affinity for the NPs. This system is more advantageous than other enzyme immobilization techniques as the active sites of the enzyme are not altered by the immobilization process and are available for conversion of the substrates introduced in the media (FIG. 4).

[0117] The present invention is an entirely self-contained bioreactor that can be reused multiple times without a loss of the enzyme, or with a minimal loss of enzyme activity. The novel immobilization technique utilized in the present invention allows for greater exposure of the enzyme active site to the substrate by orienting the enzyme correctly, while simultaneously overcoming the limits of diffusion by bringing the substrate to the enzyme by way of cycling the substrate containing media through the flow cell. Furthermore, the materials used in the construction of the present invention are low cost, “off-the-shelf” components that reduce the cost of the invention by orders of magnitude over that of any competitor. Finally, the modular design of the present invention also allows for rapid scalability from niche laboratory experiments to large scale industrial operations with very little effort.

[0118] The functionality of the immobilization was confirmed in two experiments, in the first a histidine tagged green fluorescent protein (GFP) was immobilized onto the surface of the cellulose-NP substrate and then viewed using fluorescent microscopy. If the surface of the cellulose-NP substrate emitted green light under the microscope, it can be deduced that the GFP protein was present and immobilized, while not losing the ability to fluoresce thereby maintaining its active conformation (FIG. 5).

[0119] The second experiment was performed to confirm that enzymatically active proteins immobilized onto the cotton-NP matrix did not lose their ability to perform their biochemical reactions. To do this, a N-terminal histidine tagged beta-glucosidase enzyme was immobilized onto the surface of the cotton-NP matrix. The chemical substrate pNP-β-D-glucopyranoside was then cycled through the enzyme immobilized matrix. Functional enzyme immobilization allows for the hydrolysis of the pNP-β-D-glucopyranoside substrate and the release of pNP can be detected visually by a change in the colour of the reaction media from clear to yellow. This can be further quantified using spectroscopy. This experiment was successful and proved that enzymes could be immobilized onto the surface of the substrate and remain biochemically active (FIGS. 6 and 7).

[0120] The concept of enzyme immobilization has been thoroughly investigated in recent years and holds major potential in a number of commercial and academic practices. However, cost and efficiency drawbacks currently prevent these technologies from being commercially viable. The present invention overcomes both of these major limitations. The immobilization matrices that current technologies employ are mostly synthetically produced at high cost, often involving complex biochemical processes which require the use of toxic compounds that can reduce the catalytic activity of the enzyme (Table 1). Furthermore, the mechanisms by which these matrices immobilize the proteins often reduce the activity of the enzyme in two distinct manners.

[0121] The first is by reducing access of the substrate to the active site of the enzyme by the suboptimal orientation of the enzyme upon immobilization. This is known as steric hindrance of the enzyme active site and results in the loss of enzyme activity, as a result of the key active site being blocked and reactions not being able to take place (FIG. 4). This occurs due to the method of immobilization inherent in other systems. Examples of such systems are the interaction between the activated resin (immobilization matrix) with the primary amines (—NH.sub.2) or carboxyl groups (—COOH), or other target groups (lysine residues, etc), on the surface of the protein of interest (Table 1). The issue is that these groups can be found over the entire surface of the protein. This leads to non-oriented immobilization of the protein, which can result in steric hindrance. Furthermore, these groups are not specific to proteins of interest, therefore requiring expensive purification of the proteins prior to immobilization, to ensure that only the specific protein of interest is immobilized.

[0122] Secondly, the immobilization process of other technologies can result in a negative conformational change in the structure of the enzyme resulting in a further loss of activity. This can be seen in the case of enzymes which are immobilized by utilization of electrostatic or hydrophobic interactions (FIG. 8). Proteins may be misfolded due to their interaction with the immobilizing surface. Because catalytic activity is strongly linked with the structural conformity of the protein, these effects have a negative impact on the reaction rate of the biochemical processes (FIG. 8).

[0123] The present overcomes these issues by making use of an organic cellulose matrix, which provides an affordable immobilization complex, as well as limiting any intensive synthetic processes that require toxic chemicals. The cellulose matrix is also extremely permeable compared to the agarose or silica alternatives, subsequently resulting in an increased rate of mass transfer and making it an attractive platform for large volume reactions. Additionally, the immobilization process utilized by the present invention is based on the affinity between the Ni-NPs and the histidine tag engineered on the terminal domains of the proteins of interest. This has a twofold benefit, the first is overcoming the negative effect of steric hindrance, as a result of the histidine tag acting as a directional bridge and spacer between the immobilization platform and the enzyme thus ensuring that the active sites of the enzyme are not blocked from interacting with their substrates. Secondly, the histidine tag ensures that only the protein of interest is immobilized, since this tag is not found in other proteins, which is in contrast to the use of amine or carboxyl groups that are found extensively on other proteins. Finally, because the present invention relies on the gentle interaction of Ni-NP and histidine and not on physical or entrapment immobilization approaches, the conformation of the enzyme is not negatively modified by immobilization. The combination of these features drastically increases enzyme activity, stability and reusability.

TABLE-US-00001 TABLE 1 Enzyme immobilization platforms Pierce NHS- AminoLink AminoLink SulfoLink Activated Coupling Plus Coupling Coupling GlycoLink CarboxyLink Agarose Resin Resin Resin Coupling Coupling Target —NH.sub.2 —NH.sub.2 —NH.sub.2 —SH —CHO —COOH Support 6% agarose 4% agarose 4% agarose 6% agarose Polyacrylamide/ 4% agarose azlactone copolymer Coupling >25 mg/mL 1-20 mg/mL 20 mg/mL 20 mg/mL 1-10 mg/ml 5 mg/mL capacity resin resin resin resin resin resin Coupling time 30 min 4 hr 4 hr 2-3.5 hr 30 min 4 hr Recommended Proteins Proteins, Proteins, Proteins, Glycoproteins, Unmodified for antibodies antibodies peptides, polyclonal peptides antibodies antibodies Advantages High coupling High coupling High coupling Allows for Correctly Flexible and efficiency and efficiency efficiency gentle elution orients gentle capacity antibodies coupling during coupling conditions Disadvantages Narrow pH May be May be Protein must Not Not range (7-9); coupled at coupled at be reduced recommended recommended non-oriented antigen- antigen- first; non- for monoclonal for antibodies protein binding site, binding site, oriented antibodies immobilization non-oriented non-oriented protein protein protein immobilization immobilization immobilization Immo WO19/ Bead PolyLink 186452 Kit Epoxy Kit Zymotronix Cell Mosaic Target Lysine Multiple Covalent Cys amino Residues binding to acid covalent methacrylate bond on the and styrene C-or N- beads terminal Support Styrene and Beads Styrene Magnetic 4% agarose maelic beads nanoparticles anhydride Coupling 4-10 mg/mL — >150 mg/ml — — capacity Coupling time 1 hr 20 hrs Recommended Proteins Proteins Proteins Proteins Proteins for Advantages — A variety of Fairly large Ease of Custom kit carriers for volume separation with peptide either reactions. A and recovery modifications covalent, variety of of enzymes for Cys absorbed, resins amino acid cationic or anionic binding Disadvantages Slow Requires in- Requires in- One pot Expense of diffusion depth depth reaction agarose and rates optimisation optimisation reduced flow i.e. time i.e. time rate of substrate

[0124] The three-dimensional modular flow cell design allows for substrates to be used in a recyclable manner, offering maximum product throughput. The present invention can therefore accommodate a variety of substrates and cofactors, as well as multi-enzyme networks, all linked in a series of modular cassettes. This ultimately allows for the potential of a fully integrated cell free environment for entire biosynthetic pathways (FIG. 9).

[0125] The production of the present enzyme immobilization technology greatly benefits enzyme binding and functionality and additionally limits the presence of toxic compounds during the production of the immobilization platform.

[0126] Ultimately, present invention has the potential to be used in order to synthesize a variety of commercially and environmentally favourable products, at low cost. Additionally, this technology holds great potential in a multitude of analytical, diagnostic and industrial applications.

[0127] The following examples are offered by way of illustration and not by way of limitation.

EXAMPLE 1

[0128] Nanoparticle (NP) Synthesis

[0129] Nickel nanoparticles were synthesized in a 1 L round bottom flask containing 20 mL ethylene glycol (Sigma-Aldrich), 100 mg of nickel chloride (Sigma-Aldrich), 500 mg of polyvinylpyrrolidone (Sigma-Aldrich) and 20 μL of deionised water.

[0130] The mixture was then introduced to a rotavapor in a 90° C. water bath and mixed at ˜80% RPM under vacuum until the contents were completely transparent. Following this, 200 mg of sodium borohydride (Sigma-Aldrich), acting as a reducing agent, was added to the solution.

[0131] The solution began to turn black and was placed on to the rotavapor for 30 minutes with mixing at 90° C. Following this, 50 mg of sodium borohydride and 10 μL of deionised water were added to the solution every 30 minutes until a total of 400 mg of sodium borohydride was added and the solution had been incubating for a total of 2.5 hours.

[0132] The solution was then removed from the rotavapor and placed in a glass vial, covered in tinfoil (to prevent photo-oxidation) and stored at 4° C. This solution will be referred to as the “NP stock solution”.

[0133] Cotton NP Functionalization

[0134] In order to functionalize the cotton support matrix with the nickel nanoparticles a working solution of NPs, containing 100 μL of the NP stock solution was resuspended in 24 900 μL of chloroform to form a stable colloidal solution, was made up.

[0135] Following this, a 15 mg piece of cotton wool was placed in 10 mL of working solution and mixed for one minute. After which, the cotton wool was removed and drained of any liquid chloroform and allowed to dry at room temperature. The cotton wool was then placed back into the chloroform and the process was repeated twice more.

[0136] This increases the efficiency of association between the NPs and the cotton wool. To remove any NPs that are weakly associated with the cotton wool matrix, the cotton wool is then washed twice in 15 mL of 95% ethanol, followed by a final wash in 15 mL of deionised water.

[0137] Protein Production and Expression

[0138] The vectors pRSF-Duet1:GFP and psFOX-oxB20:BGL4 were provided by the Dicks laboratory and Dr. Bianke Loedolff, respectively. These vectors contain nucleic acid sequences encoding the green fluorescent protein (GFP) (SEQ ID NO:2) and beta-glucosidase enzymes (BGL4) (SEQ ID NO:2) (the respective nucleic acid sequences are SEQ ID NO:1 and SEQ ID NO:3).

[0139] These two proteins were expressed in two distinct processes dictated by their specific vectors. For the GFP, the vector was transformed into the E. coli BL21 (DE3) host via the heat shock transformation method (Addgene). A positive colony that was confirmed by PCR was used to inoculate a 5 mL Luria Broth (LB) culture, supplemented with 50 mg/mL kanamycin and grown overnight at 37° C. with aeration. The following day, the overnight culture was used to inoculate 400 mL of sterile terrific broth supplemented with 50 mg/ml kanamycin. The culture was grown at 37° C. with aeration until an OD.sub.600 of 0.6 was reached. Following this, 1 mM Thio-B-D-galactopyranoside (IPTG) was added to the culture and it was incubated at room temperature for 24 hours. The cells were centrifuged (8 000 g, 30 min at 4° C.) and the pellet resuspended in 40 mL lysis buffer (10 mM Tris-HCl (pH 8.0), Triton-X100 (1%), lysozyme (1 mg/mL), DNase (1 ng/μL) and RNase (10 ng/μL)). The cell suspension was incubated on ice for 30 min, followed by disruption through sonication on ice (3 times at 70% power output, 50% pulses for 3 min). Lysed samples were centrifuged (12 500 g, 2 hours, 4° C.) and proteins in the supernatant purified by IMAC. The supernatant was adjusted to a final imidazole concentration of 40 mM and loaded onto Ni-Sepharose 6 Fast Flow columns (GE Healthcare, South Africa) which were pre-equilibrated with SB40 (SB buffer containing 40 mM imidazole). Columns were washed with SB40 and His-tagged fusion proteins eluted using SB500 (SB buffer containing 500 mM imidazole).

[0140] For BGL4, the vector was transformed into the E. coli BL21 (DE3) host via the heat shock transformation method (Addgene). A positive colony that was confirmed by PCR was used to inoculate a 5 mL Luria Broth (LB) culture, supplemented with 50 mg/mL kanamycin and grown overnight at 37° C. with aeration. The following day, the overnight culture was used to inoculate 400 mL of sterile terrific broth supplemented with 50 mg/ml kanamycin. The culture was grown at 37° C. with aeration until an OD.sub.600 of 0.6 was reached. Following this, the culture was incubated at room temperature for 24 hours.

[0141] The cells were then centrifuged (8000 g, 30 min at 4° C.) and the pellet resuspended in 40 mL lysis buffer (50 mM HEPES (pH 7.5), Triton-X100 (1%), lysozyme (1 mg/mL), DNase (1 ng/μL), RNase (10 ng/μL), MgCl.sub.2 (5 mM), EDTA (1 mM), Na-ascorbate (50 mM), benzamidine (1 mM) and PMSF (1 mM)). The cell suspension was incubated on ice for 30 min, followed by disruption through sonication on ice (3 times at 70% power output, 50% pulses for 3 min). Lysed samples were centrifuged (12 500 g, 2 hours, 4° C.) and proteins in the supernatant purified by IMAC. The supernatant was adjusted to a final imidazole concentration of 25 mM and loaded onto Ni-Sepharose 6 Fast Flow columns (GE Healthcare, South Africa) which were pre-equilibrated with EQ buffer (HEPES (50 mM), MnCl.sub.2 (2 mM)). Columns were then washed with EQ25 (EQ buffer and imidazole (25 mM)) and His-tagged fusion proteins eluted using EQ500 (EQ buffer and imidazole (500 mM)).

[0142] Protein Immobilization

[0143] The immobilization of N-terminal histidine tagged (6X) GFP and N-terminal tagged (10X) BGL4 (beta-glucosidase) were performed identically. A 1/20 working solution of each peptide was first made up by diluting 500 μL of purified protein in 19 500 μL of working buffer consisting of either Tris-HCl (10 mM, pH 8.0) or HEPES (50 mM, pH 7.5) for GFP and BGL4, respectively. To immobilize the peptides onto the functionalized cotton wool matrix, a peristaltic pump was used to transfer the peptide working solution cyclically through the cotton matrix which was housed within a modified syringe. The functionalized cotton wool contained within the modified syringe served as a “bioreactor” and here acts as a prototype of the bioreactor of the present invention. The protein working solutions were passed through the prototype bioreactor for 30 minutes and then washed with 10 mL working buffers of Tris-HCl (10 mM, pH 8.0) or HEPES (50 mM, pH 7.5) for GFP and BGL4, respectively. This washing step removes any protein that has not been immobilized. The protein activated enzyme-polymer conjugates are now ready for a biocatalysis reaction (for BGL4) or fluorescent microscope analysis (for GFP).

[0144] Enzymatic Conversion Using the System

[0145] In order to demonstrate that the immobilized BGL4 enzyme retained its β-glucosidase enzyme activity, a continuous hydrolysis reaction was performed using the synthetic substrate p-nitrophenyl-β-glucopyranoside (pNPG).

[0146] The immobilized enzyme catalysed continuous hydrolysis reaction was performed in a cyclic batch system by cycling 20 mL of reaction solution (50 mM HEPES (pH 7.5), 4 mg/mL of pNPG) through the enzyme-polymer conjugate which contained the immobilized BGL4 peptide. At five minute intervals, 100 μL of the reaction solution was transferred to a 96-well microtiter plate containing 200 μL of sodium carbonate (0.5 M) and measured at 415 nm.

[0147] The cleavage of the sugar moieties from the pNPG by the β-glucosidase liberates p-nitrophenol that is quantified spectrophotometrically at a wavelength at or around 415 nm. An increase in absorbance at these wavelengths indicates that the enzyme is catalytically active when immobilized. Furthermore, the liberated p-nitrophenol will shift the colour of the reaction from clear to yellow, a clear indicator of enzyme activity.

[0148] As can be seen in FIGS. 6 and 7, the immobilized beta-glucosidase enzyme retained its catalytic activity and was highly efficient at cleaving the p-nitrophenol from the glucosyl sugar moiety.

EXAMPLE 2

[0149] Nickel Nanoparticle Synthesis

[0150] Nickel nanoparticles (NPs) were synthesized by a novel method broadly based on the reduction of nickel chloride by sodium borohydride, under highly specific and controlled conditions.

[0151] Specifically, a low concentration range of sodium borohydride (NaBH.sub.4, Sigma-Aldrich) was prepared using deionized water (dH.sub.2O) with trace sodium hydroxide, to prevent the spontaneous reduction of NaBH.sub.4 in dH.sub.2O (6 mL, 10 mM; 20 mM; 40 mM NaBH.sub.4 in 0.2% w/v NaOH). Nickel chloride (NiCl, Sigma-Aldrich) was prepared in solution at exactly half the concentration of the respective NaBH.sub.4 (2 mL, 5 mM; 10 mM; 20 mM NiCl, respectively, in dH.sub.2O). Both solutions were cooled on ice prior to the synthesis reaction.

[0152] Ensuring agitation by vortex, the ice cold NiCl solution was gradually added to the ice cold NaBH.sub.4 solution. This mixture was continuously vortexed and kept cold on ice in brief intervals throughout vortexing. The reaction proceeded slowly, directly correlating with the concentration of reagents, with the observable reaction occurring when the solution turned grey as nickel NPs were synthesized. Agitation was suspended immediately after the observable reaction occurred, and each sample was placed on ice.

[0153] Spectrometry

[0154] The standard range of nickel nanoparticle colloids were analyzed by spectrometry for nanoparticle density using a microplate reader (VERSA max, Tunable). Each colloid sample was prepared in a 96-well microtiter plate, with dH.sub.2O as a blank, and absorbance readings were measured at a wavelength of 550 nm (100 μL in each well, A.sub.550 nm).

[0155] Nickel Nanoparticle Colloid Dispersion and Storage

[0156] The nickel NP solution was centrifuged (10 000×g, 2 min) and the supernatant discarded. The remaining nickel NPs were washed with dH.sub.2O and subsequently separated by centrifugation (10 000×g, 2 min) and the supernatant discarded. The nickel NP pellet was resuspended in ethanol and the colloidal solution was subsequently stabilized by the addition of ethylene glycol (10% v/v in colloid). The resulting nickel NP colloid was placed in an ultrasonic water bath and sonicated for 10 min to separate any nickel NP aggregates.

[0157] Polymer Characterization by Scanning Electron Microscopy (SEM)

[0158] Characterization based on size and shape of the synthesized nickel polymers and nanoparticles were conducted at the Stellenbosch University Central Analytical Facility (CAF, EM Unit). High resolution nano-scale images were produced using a field emission scanning electron microscope (MERLIN™ FE-SEM, Zeiss).

[0159] Protein Immobilization to Nickel NPs

[0160] Protein immobilization was performed using the N-terminal histidine tagged (6X) GFP. The GFP was isolated as previously described .

[0161] The nickel NP stock colloid was centrifuged (10 000×g, 2 min) and the supernatant discarded. The nickel NP pellet was subsequently washed with dH.sub.2O by vortexing, followed by centrifugation (10 000×g, 2 min) and the supernatant discarded. This washing process was repeated three times to ensure all of the solvent and ethylene glycol were removed.

[0162] GFP was prepared in a 10× dilution in a phosphate buffered solution (pH 5.0, 1 M). The GFP dilution was added to the washed nickel NP pellet and vortexed. The mixture was subsequently incubated at 37° C. for 1 h. Following incubation, the sample was centrifuged (10 000×g, 2 min) and the supernatant discarded. The remaining nickel NP-GFP pellet was washed with TE buffer solution (pH 8.0, 10 mM Tris, 1 mM EDTA) three times, as previously described. The nickel NP-GFP sample was then analysed using a fluorescent microscope equipped with a GFP filter (Axio Scope.A1, Zeiss), presenting the nickel NP-GFP stable complex.

[0163] The samples were kept at room temperature for two weeks before a subsequent analysis using the fluorescent microscope to test for protein stability over time. This stability test presented results coherent with the initial analysis, suggesting a high level of stability for the immobilized GFP.

[0164] Standardized Nanoparticle Synthesis

[0165] The synthesis of NiNPs was carried out at ice cold temperatures, allowing for a controlled and standard reaction. This was observed in the direct correlation between the concentration of NaBH.sub.4 and the absorbance of the corresponding NiNP colloid at 550 nm (FIG. 28).

[0166] The colloids were further characterized by their physical properties, with particular focus on the nature of the synthesized nickel particles. Using Field emission scanning electron microscopy (FE-SEM), the nature of the particles formed (respective to the concentration of NaBH.sub.4) were clearly observed (FIG. 29). At the highest NaBH.sub.4 concentration (40 mM), it is clear that limited NiNPs are formed (FIG. 29A). Rather, there is a distinct degree of polymerization in the colloid, as seen by the sheet or polymer nature of the particles in the 40 mM NaBH.sub.4 sample image. The degree of polymerization decreased as the concentration of NaBH.sub.4 also decreased. The 20 mM NaBH.sub.4 sample presented fewer polymeric molecules, but rather aggregates of spherical particles (FIG. 29B). The average size of these particles were approximately 250 nm in diameter, consequently too large to be deemed nanoparticles (diameter of 0-100 nm). The final sample, at an NaBH.sub.4 concentration of 10 mM, presented aggregates of NiNPs, with an average particle diameter of approximately 50 nm, categorizing these as nanoparticles (FIG. 29C).

[0167] Although the synthesis of NiNPs was observed, the level of particle aggregation poses an issue for the immobilization of enzymes, as the surface area of the NiNPs is limited as aggregates (FIG. 29C). Using a combination of sonication and particle dispersion in ethanol (10% v/v ethylene glycol) directly after synthesis, the NiNPs were successfully dispersed, allowing for independent NiNPs to be found in the colloidal solution (FIG. 30).

[0168] Enzyme Immobilization

[0169] In order to provide putative evidence for the capability of our NiNPs for immobilization of enzymes, we used GFP due to its characteristic observed fluorescence when active. Following protein loading, as well as multiple washing processes, it was evident that GFP successfully, and with strong affinity, bound and was immobilized to the nickel particles (FIG. 31).

[0170] The same sample of GFP-NiNP as previously used (FIG. 31) was kept at room temperature for two weeks in order to observe the level of protein stability in unfavourable conditions over time. Following this, it was found that (although not to a matching level) the GFP retained a significant level of activity, as observed by the fluorescence of immobilized GFP to the nickel particles, even after two weeks at room temperature (FIG. 32).