Multi-chain polypeptide-containing tri-specific binding molecules
11820818 · 2023-11-21
Assignee
Inventors
- Leslie S. Johnson (Rockville, MD)
- Ling Huang (Rockville, MD, US)
- Gurunadh Reddy Chichili (Rockville, MD, US)
- Kalpana Shah (Rockville, MD, US)
- Chia-Ying Kao Lam (Rockville, MD, US)
- Stephen James BURKE (Rockville, MD, US)
- Liqin LIU (Rockville, MD, US)
- Paul A. Moore (Rockville, MD, US)
- Ezio Bonvini (Rockville, MD)
- Bhaswati Barat (Rockville, MD, US)
Cpc classification
C07K16/2809
CHEMISTRY; METALLURGY
C07K2317/73
CHEMISTRY; METALLURGY
C07K16/283
CHEMISTRY; METALLURGY
C07K2318/20
CHEMISTRY; METALLURGY
C07K16/28
CHEMISTRY; METALLURGY
C07K2317/92
CHEMISTRY; METALLURGY
C07K16/2878
CHEMISTRY; METALLURGY
International classification
Abstract
The present invention relates to Tri-Specific Binding Molecules, which are multi-chain polypeptide molecules that possess three Binding Domains and are thus capable of mediating coordinated binding to three epitopes. The Binding Domains may be selected such that the Tri-Specific Binding Molecules are capable of binding to any three different epitopes. Such epitopes may be epitopes of the same antigen or epitopes of two or three different antigens. In a preferred embodiment, one of such epitopes will be capable of binding to CD3, the second of such epitopes will be capable of binding to CD8, and the third of such epitopes will be capable of binding to an epitope of a Disease-Associated Antigen. The invention also provides a novel ROR1-binding antibody, as well as derivatives thereof and uses for such compositions.
Claims
1. A multi-chain polypeptide-containing Tri-Specific Binding Molecule that immunospecifically binds to three different epitopes, comprising: (I) three different polypeptide chains covalently complexed together; (II) an Antigen-Binding Domain I that immunospecifically binds to an Epitope I present on a first antigen, an Antigen-Binding Domain II that immunospecifically binds to an Epitope II present on a second antigen, and an Antigen-Binding Domain III that immunospecifically binds to an Epitope III present on a third antigen; and (III) a Fc Domain; wherein: (A) a first polypeptide chain comprises, in the N-terminus to C-terminus direction: (VL1 Domain)-(Linker 1)-(VH.sub.II Domain)-(Linker 2)-(Heterodimer-Promoting Domain)-(Linker 3)-(CH2-CH3 Domain); or (Cysteine-Containing Domain)-(CH2-CH3 Domain)-(Linker 4)-(V.sub.L1 Domain)-(Linker 1)-(VH.sub.II Domain)-(Linker 2)-(Heterodimer-Promoting Domain); (B) a second polypeptide chain comprises, in the N-terminus to C-terminus direction: (VL.sub.II Domain)-(Linker 1)-(VH.sub.I Domain)-(Linker 2)-(Heterodimer-Promoting Domain); (C) a third polypeptide chain comprises, in the N-terminus to C-terminus direction: Domain)-(Flexible Linker)-(VH.sub.III Domain)-(Cysteine-Containing Domain2)-(CH2-CH3 Domain); or (CL Domain)-(VL.sub.III Domain)-(Flexible Linker)-(VH.sub.III Domain)-(CH1 Domain)-(Cysteine-Containing Domain)-(CH2-CH3 Domain); (D) the VL.sub.I Domain is a Light Chain Variable Domain of an immunoglobulin that binds to Epitope I, the VH.sub.I Domain is a Heavy Chain Variable Domain of an immunoglobulin that binds to Epitope I, the VL.sub.II Domain is a Light Chain Variable Domain of an immunoglobulin that binds to Epitope II, the VH.sub.II Domain is a Heavy Chain Variable Domain of an immunoglobulin that binds to Epitope II, the V.sub.III Domain is a Light Chain Variable Domain of an immunoglobulin that binds to Epitope III, and the VH.sub.III Domain is a Heavy Chain Variable Domain of an immunoglobulin that binds to Epitope III; (E) the VL.sub.I Domain and the VH.sub.I Domain associate to form the Antigen-Binding Domain I, the VL.sub.II Domain and the VH.sub.II Domain associate to form the Antigen-Binding Domain II, the VL.sub.III Domain and the VH.sub.III Domain associate to form the Antigen-Binding Domain III, and the CH2-CH3 Domain of the first polypeptide chain and the CH2-CH3 Domain of the third polypeptide chain associate to form the Fc Domain, the Antigen-Binding Domain I and the Antigen-Binding Domain II are Diabody-Type Binding Domains, and the Antigen-Binding Domain Ill is a Non-Diabody-Type Binding Domain; (F) the first, second and third antigens are the same antigen, or are independently the same or different from another of the antigens; and (G) the Linker 1 comprises the sequence of SEQ ID NO: 1; the Linker 2 comprises the sequence of SEQ ID NO: 2 or 131; the Linker 3 comprises the sequence of SEQ ID NO: 5 or GGG; the Linker 4 comprises the sequence of SEQ ID NO: 15, 16, 131 or 132, or GGC or GGG; the CH2-CH3 Domain comprises the sequence of SEQ ID NO: 7 or 8; the Cysteine-Containing Domain independently comprises the sequence of SEQ ID NO: 2, 5, 10, 11, 12, 13, 14, 127, 128, 129, 130 or 133; the Heterodimer-Promoting Domain on the first polypeptide chain is an E-coil Domain and the Heterodimer-Promoting Domain on the second polypeptide chain is a K-coil Domain, or the Heterodimer-Promoting Domain on the first polypeptide chain is a K-coil Domain and the Heterodimer-Promoting Domain on the second polypeptide chain is an E-coil Domain, the E-coil Domain independently comprises the sequence of SEQ ID NO: 3 or 115, and the K-coil Domain independently comprises the sequence of SEQ ID NO: 4 or 116; the CH1 Domain comprises the sequence of SEQ ID NO: 9; and the CL Domain comprises the sequence of SEQ ID NO: 13 or 14.
2. The Tri-Specific Binding Molecule of claim 1, wherein: the Linker 2 comprises a cysteine residue, the E-coil Domain and the K-coil Domain adjacent to the Linker 2 each comprises a cysteine residue, or the Linker 2 comprises a cysteine residue and the E-coil Domain or the K-coil Domain adjacent to the Linker 2 comprises a cysteine residue.
3. The Tri-Specific Binding Molecule of claim 2, wherein: the E-coil Domain of SEQ ID NO:115 or the K-coil Domain of SEQ ID NO:116 is adjacent to the Linker 2 when the Linker 2 comprises the sequence of SEQ ID NO: 131; the E-coil Domain of SEQ ID NO: 3 or the K-coil Domain of SEQ ID NO: 4 is adjacent to the Linker 2 when the Linker 2 comprises the sequence of SEQ ID NO: 2; or the E-coil Domain of SEQ ID NO: 115 or the K-coil Domain of SEQ ID NO: 116 is adjacent to the Linker 2 when the Linker 2 comprises the sequence of SEQ ID NO: 2.
4. The Tri-Specific Binding Molecule of claim 1, wherein: the CH2-CH3 Domain of the first polypeptide chain is a knob-bearing CH2-CH3 Domain and the CH2-CH3 Domain of the third polypeptide chain is a hole-bearing CH2-CH3 Domain; or the CH2-CH3 Domain of the third polypeptide chain is a knob-bearing CH2-CH3 Domain and the CH2-CH3 Domain of the first polypeptide chain is a hole-bearing CH2-CH3 Domain.
5. The Tri-Specific Binding Molecule of claim 4, wherein: the knob-bearing CH2-CH3 Domain comprises the sequence of SEQ ID NO: 7, and the hole-bearing CH2-CH3 Domain comprises the sequence of SEQ ID NO: 8.
6. The Tri-Specific Binding Molecule of claim 1, wherein the CH2-CH3 Domain of the first polypeptide chain and the third polypeptide chain comprise: (A) one substitution selected from the group consisting of: F243L, R292P, Y300L, V305I, and P396L; (B) two substitutions selected from the group consisting of: (1) F243L and P396L; (2) F243L and R292P; and (3) R292P and V305I; (C) three substitutions selected from the group consisting of: (1) F243L, R292P and Y300L; (2) F243L, R292P and V305I; (3) F243L, R292P and P396L; and (4) R292P, V305I and P396L; (D) four substitutions selected from the group consisting of: (1) F243L, R292P, Y300L and P396L; and (2) F243L, R292P, V305I and P396L; or (E) five substitutions selected from the group consisting of: (1) F243L, R292P, Y300L, V305I and P396L; and (2) L235V, F243L, R292P, Y300L and P396L.
7. The Tri-Specific Binding Molecule of claim 1, wherein one of Epitope I, Epitope II or Epitope III is an epitope of: an effector cell selected from CD2, CD3, CD16, CD19, CD20, CD22, CD32B, CD64, B cell Receptor (BCR), T cell Receptor (TCR), or NKG2D Receptor; or CD8; or a Disease-Associated Antigen.
8. The Tri-Specific Binding Molecule of claim 7, wherein: (A) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of CD3, an epitope of CD8 and an epitope of the Disease-Associated Antigen; (B) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of CD3, an epitope of the Disease-Associated Antigen and an epitope of CD8; (C) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of CD8, an epitope of CD3, and an epitope of the Disease-Associated Antigen; (D) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of CD8, an epitope of the Disease-Associated Antigen and an epitope of CD3; (E) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of the Disease-Associated Antigen, an epitope of CD3, and an epitope of CD8; or (F) the Epitope I, Epitope II and Epitope III are, respectively, an epitope of the Disease-Associated Antigen, an epitope of CD8, and an epitope of CD3.
9. The Tri-Specific Binding Molecule of claim 8, wherein one of Epitope I, Epitope II or Epitope III is an epitope of CD3 and the Antigen-Binding Domain that immunospecifically binds to the epitope of CD3 comprises the six CDRs of SEQ ID NO: 17 and 18; 19 and 20; 21 and 22; 23 and 25; 24 and 25; 26 and 27; 26 and 28; or 101 and 102; or comprises: the light chain variable domain of SEQ ID NO: 17 and the heavy chain variable domain of SEQ ID NO: 18, the light chain variable domain of SEQ ID NO: 19 and the heavy chain variable domain of SEQ ID NO: 20, the light chain variable domain of SEQ ID NO: 21 and the heavy chain variable domain of SEQ ID NO: 22, the light chain variable domain of SEQ ID NO: 23 and the heavy chain variable domain of SEQ ID NO: 25, the light chain variable domain of SEQ ID NO: 24 and the heavy chain variable domain of SEQ ID NO: 25, the light chain variable domain of SEQ ID NO: 26 and the heavy chain variable domain of SEQ ID NO: 27, the light chain variable domain of SEQ ID NO: 26 and the heavy chain variable domain of SEQ ID NO: 28, or the light chain variable domain of SEQ ID NO: 101 and the heavy chain variable domain of SEQ ID NO: 102.
10. The Tri-Specific Binding Molecule of claim 8, wherein one of Epitope I, Epitope II or Epitope III is an epitope of CD8 and the Antigen-Binding Domain that immunospecifically binds to the epitope of CD8 comprises the six CDRs of SEQ ID NO: 29 and 30; or 31 and 32; or comprises: the light chain variable domain of SEQ ID NO: 29 and the heavy chain variable domain of SEQ ID NO: 30, or the light chain variable domain of SEQ ID NO: 31 and the heavy chain variable domain of SEQ ID NO: 32.
11. The Tri-Specific Binding Molecule of claim 8, wherein the Disease-Associated Antigen is: a cancer antigen on the surface of a cancer cell; or a pathogen antigen on the surface of a pathogen or pathogen-infected cell.
12. The Tri-Specific Binding Molecule of claim 11, wherein the cancer antigen is colon cancer antigen 19.9; gastric cancer mucin antigen 4.2; colorectal carcinoma antigen A33; ADAM-9; AFP oncofetal antigen-alpha-fetoprotein; ALCAM; B7-H3; BAGE; beta-catenin; CA125; Carboxypeptidase M; B1; CD5; CD19; CD20; CD22; CD23; CD25; CD27; CD28; CD30; CD33; CD36; CD40/CD154; CD45; CD56; CD46; CD52; CD79a/CD79b; CD103; CD317; CDK4; CEA carcinoembryonic antigen; CEACAM5 and CEACAM6; CO-43 (blood group Leb) and CO-514 (blood group Lea); CTLA-1 and CTLA-4; Cytokeratin 8; DRS; E1 series (blood group B); EGF-R epidermal growth factor receptor; Ephrin receptors (EphA2); Erb (ErbB1; ErbB3; ErbB4); lung adenocarcinoma antigen F3; antigen FC10.2; GAGE-1; GAGE-2; GD2/GD3/GD49/GM2/GM3; GICA 19-9; gp37 (human leukemia T cell antigen); gp75 (melanoma antigen); gp100; HER-2/neu; human B-lymphoma antigen-CD20; human milk fat globule antigen; human papillomavirus-E6/human papillomavirus-E7; HMW-MAA (high molecular weight melanoma antigen); I antigen (differentiation antigen); I(Ma) as found in gastric adenocarcinomas; Integrin Alpha-V-Beta-6 Integrinβ6 (ITGB6); Interleukin-13 Receptor α2 (IL13Rα2); JAM-3; KID3; KID31; KS 1/4 pan-carcinoma antigen; KSA (17-1A); human lung carcinoma antigens L6 and L20; LEA; LUCA-2; M1:22:25:8, M18, M39; MAGE MAGE-1; MAGE-3; MART; My1, MUC-1; MUM-1; N-acetylglucosaminyltransferase; neoglycoprotein; NS-10; OFA-1 and OFA-2; Oncostatin M (Oncostatin Receptor Beta); ρ15; PSA (prostate specific antigen); PSMA; PEMA (polymorphic epithelial mucin antigen); PIPA; prostatic acid phosphate; R24; ROR1; SSEA-1, SSEA-3 and SSEA-4; sTn; T cell receptor derived peptide; T.sub.5A.sub.7; Tissue Antigens 37; TAG-72; TL5 (blood group A); TNF-α receptor; TNF-β receptor; TNF-γ receptor; TRA-1-85 (blood group H); Transferrin Receptor; TSTA tumor-specific transplantation antigen; VEGF-R; Y hapten, Le.sup.y; or 5T4.
13. The Tri-Specific Binding Molecule of claim 12, wherein one of Epitope I, Epitope II or Epitope III is an epitope of B7-H3, A33, 5T4 or ROR1 and the Antigen-Binding Domain that immunospecifically binds to the epitope of B7-H3, A33, 5T4 or ROR1 comprises: the six CDRs of SEQ ID NO: 39 and 40; 41 and 42; 43 and 44; 45 and 46; 47 and 48; 49 and 50; 51 and 52; 53 and 54; 55 and 56; or 57 and 58; or the light chain variable domain of SEQ ID NO: 39 and the heavy chain variable domain of SEQ ID NO: 40, the light chain variable domain of SEQ ID NO: 41 and the heavy chain variable domain of SEQ ID NO: 42, the light chain variable domain of SEQ ID NO: 43 and the heavy chain variable domain of SEQ ID NO: 44, the light chain variable domain of SEQ ID NO: 45 and the heavy chain variable domain of SEQ ID NO: 46, the light chain variable domain of SEQ ID NO: 47 and the heavy chain variable domain of SEQ ID NO: 48, the light chain variable domain of SEQ ID NO: 49 and the heavy chain variable domain of SEQ ID NO: 50, the light chain variable domain of SEQ ID NO: 51 and the heavy chain variable domain of SEQ ID NO: 52, the light chain variable domain of SEQ ID NO: 53 and the heavy chain variable domain of SEQ ID NO: 54, the light chain variable domain of SEQ ID NO: 55 and the heavy chain variable domain of SEQ ID NO: 56, or the light chain variable domain of SEQ ID NO: 57 and the heavy chain variable domain of SEQ ID NO: 58.
14. The Tri-Specific Binding Molecule of claim 11, wherein: the pathogen is a virus, and/or the pathogen is human immunodeficiency virus (HIV) or respiratory syncytial virus (RSV), and/or the pathogen antigen is HIV gp41, HIV gp120 or RSV glycoprotein F.
15. The Tri-Specific Binding Molecule of claim 14, wherein one of Epitope I, Epitope II or Epitope III is an epitope of HIV gp41, HIV gp120 or RSV glycoprotein F and the Antigen-Binding Domain that immunospecifically binds to the epitope of HIV gp41, HIV gp120 or RSV glycoprotein F comprises: the six CDRs of SEQ ID NO: 33 and 34; 35 and 36; or 37 and 38; or the light chain variable domain of SEQ ID NO: 33 and the heavy chain variable domain of SEQ ID NO: 34, the light chain variable domain of SEQ ID NO: 35 and the heavy chain variable domain of SEQ ID NO: 36, or the light chain variable domain of SEQ ID NO: 37 and the heavy chain variable domain of SEQ ID NO:38.
16. A pharmaceutical composition comprising the Tri-Specific Binding Molecule of claim 1 and a pharmaceutically acceptable carrier, excipient or diluent.
Description
BRIEF DESCRIPTION OF THE FIGURES
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DETAILED DESCRIPTION OF THE INVENTION
(30) The present invention relates to Tri-Specific Binding Molecules, which are multi-chain polypeptide molecules that possess three Binding Domains and are thus capable of mediating coordinated binding to three epitopes. The Binding Domains may be selected such that the Tri-Specific Binding Molecules are capable of binding to any three different epitopes. Such epitopes may be epitopes of the same antigen or epitopes of two or three different antigens. The invention also provides a novel ROR1-binding antibody, as well as derivatives thereof and uses for such compositions.
I. General Techniques and General Definitions
(31) The practice of the present invention will employ, unless otherwise indicated, conventional techniques of molecular biology (including recombinant techniques), microbiology, cell biology, biochemistry and immunology, which are within the skill of the art. Such techniques are explained fully in the literature, such as, M
II. Preferred Tri-Specific Binding Molecules of the Present Invention
(32) A. Binding Capabilities
(33) The preferred Tri-Specific Binding Molecules of the present invention are able to coordinately and simultaneously bind to three different epitopes. Such preferred Tri-Specific Binding Molecules of the present invention comprise: (I) a “Binding Domain I” that is capable of immunospecifically binding to an “Epitope I” present on a first antigen, and a “Binding Domain II” that is capable of immunospecifically binding to an “Epitope II” present on a second antigen, wherein said Binding Domain I and said Binding Domain II are both “Diabody-Type Binding Domains;” (II) a “Non-Diabody-Type” “Binding Domain III” that is capable of immunospecifically binding to an “Epitope III” present on a third antigen; and (III) an Fc Domain that is formed by the complexing of two CH2-CH3 Domains to one another.
(34) Typically, the Tri-Specific Binding Molecules of the present invention will comprise four different polypeptide chains, each having an amino terminus and a carboxyl terminus (see
(35) Although such Tri-Specific Binding Molecules are particularly preferred, the invention additionally specifically contemplates Tri-Specific Binding Molecules that comprise any combination of Binding Domains sufficient to produce a molecule having three binding specificities, of which two are binding specificities directed against Cancer Antigens, and one is a binding specificity directed against an Effector Cell Antigen. Thus, for example, the invention contemplates: a Tri-Specific Binding Molecule that comprises three Fab-Type Binding Domains, a Tri-Specific Binding Molecule that comprises one bivalent, bi-specific antibody domain (formed for example, by complexing two different light chains and two different heavy chains) and one Fab-Type Binding Domain, a Tri-Specific Binding Molecule that comprises two bivalent, bi-specific antibody domains (formed for example, by complexing four different light chains and two different heavy chains), but in which one of antibody domains has been rendered inactive, etc.
(36) The terms “polypeptide,” “polypeptide chain,” and “peptide” are used interchangeably herein to refer to polymers of amino acids of any length, but especially lengths greater than 3, 5, 10, 15, 20 or 25 amino acid residues, in which two, and more preferably all, amino acid residues are joined via an amide (peptide) bond (—NH—C(O)—). The polymer may however be linear or branched, it may comprise modified amino acids, and it may be interrupted by non-amino acids. The terms also encompass an amino acid polymer that has been modified naturally or by intervention; for example, disulfide bond formation, glycosylation, lipidation, acetylation, phosphorylation, or any other manipulation or modification, such as conjugation with a labeling component. Also included within the definition are, for example, polypeptides containing one or more analogs of an amino acid (including, for example, unnatural amino acids, etc.), as well as other modifications known in the art. The polypeptides of this invention can occur as single-chains or as complexed chains.
(37) A “Diabody-Type Binding Domain” is the Epitope-Binding Domain of a diabody, and especially, a DART® diabody. The terms “diabody” and “DART® diabody” has been discussed above, and refers to a molecule that comprises at least two polypeptide chains that preferably complex with one another through a covalent interaction to form at least two epitope binding sites, which may recognize the same or different epitopes. Two of the polypeptide chains of a diabody or DART® diabody each comprise immunoglobulin Light Chain Variable Region and an immunoglobulin Heavy Chain Variable Region, but these regions do not interact to form an epitope binding site (i.e., they are not mutually “complementary”). Rather, the immunoglobulin Heavy Chain Variable Region of one (e.g., the first) of the diabody, or DART® diabody, chains interacts with the immunoglobulin Light Chain Variable Region of a different (e.g., the second) diabody or, DART® diabody, polypeptide chain to form an epitope binding site. Similarly, the immunoglobulin Light Chain Variable Region of one (e.g., the first) of the diabody, or DART® diabody, polypeptide chains interacts with the immunoglobulin Heavy Chain Variable Region of a different (e.g., the second) diabody, or DART® diabody, polypeptide chain to form an epitope binding site. DART® diabody molecules are disclosed in United States Patent Publications No. 2013-0295121; 2010-0174053 and 2009-0060910; European Patent Publication No. EP 2714079; EP 2601216; EP 2376109; EP 2158221 and PCT Publications No. WO 2012/162068; WO 2012/018687; WO 2010/080538; WO 2006/113665, WO 2008/157379 and Moore, P. A. et al. (2011) “Application Of Dual Affinity Retargeting Molecules To Achieve Optimal Redirected T-Cell Killing Of B-Cell Lymphoma,” Blood 117(17):4542-4551; Veri, M. C. et al. (2010) “Therapeutic Control Of B Cell Activation Via Recruitment Of Fcgamma Receptor IIb (CD32B) Inhibitory Function With A Novel Bi-specific Antibody Scaffold,” Arthritis Rheum. 62(7):1933-1943; and Johnson, S. et al. (2010) “Effector Cell Recruitment With Novel Fv-Based Dual-Affinity Re-Targeting Protein Leads To Potent Tumor Cytolysis And in vivo B-Cell Depletion,” J. Mol. Biol. 399(3):436-449.
(38) Binding Domain III is preferably a “Non-Diabody-Type” Binding Domain, which is intended to denote that Binding Domain III does not have the structure of a Diabody-Type Binding Domain. Preferably, Binding Domain III is a Non-Diabody-Type Binding Domain that is a Fab-Type Binding Domain or a Receptor-Type Binding Domain. As used herein, the term “Fab-Type Binding Domain” refers to an epitope-Binding Domain that is formed by the interaction of the VL Domain of an immunoglobulin Light Chain and a complementing VH Domain of an immunoglobulin heavy chain. Fab-Type Binding Domains differ from Diabody-Type Binding Domain in that the two polypeptide chains that form a Fab-Type Binding Domain comprise only a single epitope-Binding Domain, whereas the two polypeptide chains that form a Diabody-Type Binding Domain comprise at least two epitope-Binding Domains. Thus, as used herein Fab-Type Binding Domains are distinct from Diabody-Type Binding Domain. As used herein, the term “Receptor-Type Binding Domain” refers to an epitope-binding domain of a cellular receptor that is formed by the interaction of two polypeptides. Receptor-Type Binding Domains are exemplified herein by reference to a T Cell Receptor-Type Binding Domain, which is formed from the interaction of a Variable Domain of a T Cell Receptor alpha chain and a Variable Domain of a T Cell Receptor beta chain. Such T Cell Receptor Binding Domains recognize peptides displayed in the context of MHC and are thus capable of recognizing intracellular epitopes. Although the invention is illustrated with regard to such Receptor-Type Binding Domains, it will be appreciated that Receptor-Type Binding Domains other than T Cell Receptor-Type Binding Domains may be employed, and are encompassed by the present invention. Other examples of receptors having Receptor-Type Binding Domains include the IL-2 receptor, the IL-4 receptor, the IL-7 receptor, the IL-9 receptor, the IL-15 receptor, the IL-21 the insulin receptor, and thymic stromal lymphopoietin.
(39) The Tri-Specific Binding Molecules of the present invention are thus distinguished from tetravalent binding molecules, such as those produced from the dimerization of a bivalent antibody, and preferably possess three and not four Binding Domains. As discussed below, the trispecific molecules of the present invention may possess additional binding domains (such as an Albumin-Binding Domain, an FcγR-Binding Domain, etc.). Such additional Binding Domains are not intended to be considered or counted as being one of the three Binding Domains of the Tri-Specific Binding Molecules of the present invention.
(40) As used herein, the terms “association” or “associating,” with regard to polypeptides (e.g., one diabody polypeptide to another, an immunoglobulin Light Chain to an immunoglobulin heavy chain, one CH2-CH3 Domain to another CH2-CH3 Domain, etc.) is intended to denote a non-covalent combining of the polypeptides. The terms “complexes” or “complexing” are intended to denote a covalent combining of the polypeptides.
(41) As used herein, Binding Domains of the Tri-Specific Binding Molecules of the invention are said to mediate “coordinated binding” if at least two of its Binding Domains and preferably all of its Binding Domains, are capable of concurrently being bound to their respective recognized epitopes or binding ligand. Such binding may be simultaneous. However, one aspect of the present invention relates to modifying the “on” and/or “off” rates with which such Binding Domains bind to their recognized epitopes. As used here, the “on rate” of binding is a measure of the affinity with which such Binding Domains recognize and initiate binding to their recognized epitopes. In contrast, the “off rate” of binding is a measure of the degree of stability of the Binding Domain:epitope complex. The “on” and/or “off” rates of binding can be modified by altering the amino acid sequence of the CDRs of a Binding Domain. As discussed below, independent of any CDR modifications, the extent of coordinated binding of the molecules of the present invention may be modulated by changing the configuration of the their Binding Domains so that a particular Binding Domain (i.e., a VLx/VHx Domain) is present as Binding Domain III or as an internal or external Diabody-Type Binding Domain relative to Binding Domain III (discussed in detail below).
(42) The on- and off-rates of the Binding Domains of the Binding Molecules of the present invention can be readily measured by methods well-known in the art, for example by BIACORE® analysis (Jason-Moller, L. et al. (2006) “Overview Of Biacore Systems And Their Applications,” Curr. Protoc. Protein Sci. Chapter 19:Unit 19.13; Swanson, S. J. (2005) “Characterization Of An Immune Response,” Dev. Biol. (Basel). 122:95-101; Buijs, J. et al. (2005) “SPR-MS In Functional Proteomics,” Brief Funct. Genomic Proteomic. 4(1):39-47; Karlsson, R. et al. (2004) “SPR For Molecular Interaction Analysis: A Review Of Emerging Application Areas,” J. Mol. Recognit. 17(3):151-161; Van Regenmortel, M. H. (2003) “Improving The Quality Of BIACORE-Based Affinity Measurements,” Dev. Biol. (Basel) 112:141-151; Malmqvist, M. (1999) “BIACORE: An Affinity Biosensor System For Characterization Of Biomolecular Interactions,” Biochem. Soc. Trans. 27(2):335-340; Malmqvist, M. et al. (1997) “Biomolecular Interaction Analysis: Affinity Biosensor Technologies For Functional Analysis Of Proteins,” Curr. Opin. Chem. Biol. 1(3):378-383; Fivash, M. et al. (1998) “Biacore For Macromolecular Interaction,” Curr. Opin. Biotechnol. 9(1):97-101; Malmborg, A. C. et al. (1995) “Biacore As A Tool In Antibody Engineering,” J. Immunol. Methods. 183(1):7-13). The on- and off-rates of the Binding Domains of the Binding Molecules of the present invention can be readily altered by random or directed mutagenesis of nucleic acid molecules that encode such Binding Domains, followed by the routine screening of recovered nucleic acid molecules for their ability to encode mutated proteins that exhibit such altered binding kinetics.
(43) The Binding Domains of the Tri-Specific Binding Molecules of the present invention bind to epitopes in an “immunospecific” manner. As used herein, an antibody, diabody or other epitope-binding molecule is said to “immunospecifically” bind a region of another molecule (i.e., an epitope) if it reacts or associates more frequently, more rapidly, with greater duration and/or with greater affinity with that epitope relative to alternative epitopes. For example, an antibody that immunospecifically binds to a viral epitope is an antibody that binds this viral epitope with greater affinity, avidity, more readily, and/or with greater duration than it immunospecifically binds to other viral epitopes or non-viral epitopes. It is also understood by reading this definition that, for example, an antibody (or moiety or epitope) that immunospecifically binds to a first target may or may not specifically or preferentially bind to a second target. As such, “specific binding” does not necessarily require (although it can include) exclusive binding. Generally, but not necessarily, reference to binding means “specific” binding. Two molecules are said to be capable of binding to one another in a “physiospecific” manner, if such binding exhibits the specificity with which receptors bind to their respective ligands.
(44) Thus, in their simplest embodiment, the preferred binding molecules of the present invention are at least tri-specific—being capable of mediating coordinated binding to three different epitopes. Significantly, such molecules have at least three “sites” that are capable of binding antigen: an “external” Diabody-Type Binding Domain that is located furthest from Binding Domain III, an “internal” Diabody-Type Binding Domain that is located nearest to Binding Domain III, and Binding Domain III itself. The positions of such Domains are respectively designated as Site A, Site B and Site C (
(45) The Binding Domains that bind to Epitopes I, II and III are selected to be different from one another. However, Epitopes I, II and III may be epitopes of the same antigen, of two different antigens, or of three different antigens. Thus the Tri-Specific Binding Molecules of the present invention may be capable of coordinately binding 1, 2, or 3 different antigen molecules. The Tri-Specific Binding Molecules of the present invention may be employed with respect to any possible epitope and any possible antigen. For example, the Tri-Specific Binding Molecules of the present invention may have 1, 2, or 3 Binding Domains that bind to an epitope of an effector cell (e.g., CD2, CD3, CD16, CD19, CD20, CD22, CD32B, CD64, the B cell Receptor (BCR), the T cell Receptor (TCR), and the NKG2D Receptor), or to an epitope of a cytotoxic T cell (e.g., CD8 present on cytotoxic T cells), or to an epitope of a Disease-Associated Antigen, or any combination of such potential Binding Domains.
(46) As used herein, a “Disease-Associated Antigen” is an antigen that is characteristically expressed on a “pathogen-infected” cell or on a “cancer cell,” but characteristically not expressed on a normal cell.
(47) As used herein, the term “pathogen-infected” cell refers to a cell that has been infected by a bacterium (e.g., E. coli, C. difficile, Salmonella thyphimurium, Pseudomonas aeruginosa, Vibrio cholerae, Neisseria gonorrhoeae, Helicobacter pylori, Hemophilus influenzae, Shigella dysenteriae, Staphylococcus aureus, Mycobacterium tuberculosis and Streptococcus pneumonia, etc.), a fungus (e.g., Candida, Aspergillus, Cryptococcus, Coccidioides, Histoplasma, Pneumocystis, Stachybotrys, etc.), a protozoan (Amoebozoa, Excavata, Chromalveolata, Entamoeba, Plasmodium, Giardia, Trypanosoma, Coccidia, Besnoitia, Dicrocoelium, Leishmania, etc.) or a virus (and especially an adenovirus, an adeno-associated virus, a B virus (macacine herpesvirus I), a BK virus, a bunyavirus, a chikungunya virus, a cocksackie virus, a coronavirus, a cytomegalovirus, an eastern equine encephalitis virus, an ebola virus, an enterovirus, an Epstein-Barr virus, a hantavirus, a hepatitis A virus, a hepatitis B virus, a hepatitis C virus, a hepatitis D virus, a hepatitis E virus, a herpes simplex virus 1, a herpes simplex virus 2, a human foamy virus, a human herpes virus 3, a human herpes virus 5, a human herpes virus 6, a human herpes virus 7, a human immunodeficiency virus, a human papillomavirus, a human β-lymphotropic virus, a human T cell leukemia virus I, a human T cell leukemia virus II, an influenza virus, a JC virus, a JEV, a Kaposi's sarcoma-associated herpesvirus, a Lassa virus, a lymphocytic choriomenengitis virus, a Marburg virus, a measles virus, a mumps virus, a Nipah virus, a norovirus, a Norwalk virus, an orthoreovirus, a parainfluenza virus, a parvovirus, a poliovirus, a rabies virus, a reovirus, a respiratory syncytial virus, rhinovirus, a Rift Valley fever virus, a rotavirus, rubella virus, a smallpox virus, a St Louis encephalitis virus, a variola major virus, a variola minor virus, a vericella-zoster virus, a West Nile virus, a western equine encephalitis virus, or a yellow fever virus).
(48) As used herein, the term “cancer cell” refers to a malignant cell of: an adrenal gland tumor, an AIDS-associated cancer, an alveolar soft part sarcoma, an astrocytic tumor, bladder cancer, bone cancer, a brain and spinal cord cancer, a metastatic brain tumor, a breast cancer, a carotid body tumors, a cervical cancer, a chondrosarcoma, a chordoma, a chromophobe renal cell carcinoma, a clear cell carcinoma, a colon cancer, a colorectal cancer, a cutaneous benign fibrous histiocytoma, a desmoplastic small round cell tumor, an ependymoma, a Ewing's tumor, an extraskeletal myxoid chondrosarcoma, a fibrogenesis imperfecta ossium, a fibrous dysplasia of the bone, a gallbladder or bile duct cancer, gastric cancer, a gestational trophoblastic disease, a germ cell tumor, a head and neck cancer, hepatocellular carcinoma, an islet cell tumor, a Kaposi's sarcoma, a kidney cancer, a leukemia, a lipoma/benign lipomatous tumor, a liposarcoma/malignant lipomatous tumor, a liver cancer, a lymphoma, a lung cancer, a medulloblastoma, a melanoma, a meningioma, a multiple endocrine neoplasia, a multiple myeloma, a myelodysplastic syndrome, a neuroblastoma, a neuroendocrine tumors, an ovarian cancer, a pancreatic cancer, a papillary thyroid carcinoma, a parathyroid tumor, a pediatric cancer, a peripheral nerve sheath tumor, a phaeochromocytoma, a pituitary tumor, a prostate cancer, a posterior uveal melanoma, a rare hematologic disorder, a renal metastatic cancer, a rhabdoid tumor, a rhabdomysarcoma, a sarcoma, a skin cancer, a soft-tissue sarcoma, a squamous cell cancer, a stomach cancer, a synovial sarcoma, a testicular cancer, a thymic carcinoma, a thymoma, a thyroid metastatic cancer, or a uterine cancer.
(49) Examples of antigens that are characteristically expressed by cancer cells include a “cancer antigen” such as a breast cancer antigen, an ovarian cancer antigen, a prostate cancer antigen, a cervical cancer antigen, a pancreatic carcinoma antigen, a lung cancer antigen, a bladder cancer antigen, a colon cancer antigen, a testicular cancer antigen, a glioblastoma cancer antigen, an antigen associated with a B cell malignancy, an antigen associated with multiple myeloma, an antigen associated with non-Hodgkins lymphoma, or an antigen associated with chronic lymphocytic leukemia. Exemplary antigens that are characteristically expressed by cancer cells include the antigens: colon cancer antigen 19.9; gastric cancer mucin antigen 4.2; colorectal carcinoma antigen A33 (Almqvist, Y. 2006, Nucl Med Biol. November; 33(8):991-998); ADAM-9 (United States Patent Publication No. 2006/0172350; PCT Publication No. WO 06/084075; AFP oncofetal antigen-alpha-fetoprotein (Malaguarnera, G. et al. (2010) “Serum markers of hepatocellular carcinoma,” Dig. Dis. Sci. 55(10):2744-2755); ALCAM (PCT Publication No. WO 03/093443); BAGE (Bodey, B. 2002 Expert Opin Biol Ther. 2(6):577-84); beta-catenin (Prange W. et al. 2003 J Pathol. 201(2):250-9); CA125 (Bast, R. C. Jr. et al. 2005 Int J Gynecol Cancer 15 Suppl 3:274-81); Carboxypeptidase M (United States Patent Publication No. 2006/0166291); B1 (Egloff, A. M. et al. 2006, Cancer Res. 66(1):6-9); CD5 (Calin, G. A. et al. 2006 Semin Oncol. 33(2):167-73; CD19 (Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):139-48); CD20 (Thomas, D. A. et al. 2006 Hematol Oncol Clin North Am. 20(5):1125-36); CD20 (Cang, S. et al. (2012) “Novel CD20 Monoclonal Antibodies For Lymphoma Therapy,” J. Hematol. Oncol. 5:64 pp. 1-9); CD22 (Kreitman, R. J. 2006 AAPS J. 18; 8(3):E532-51); CD23 (Rosati, S. et al. 2005 Curr Top Microbiol Immunol. 5; 294:91-107); CD25 (Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):139-48); CD27 (Bataille, R. 2006 Haematologica 91(9):1234-40); CD28 (Bataille, R. 2006 Haematologica 91(9): 1234-40); CD30 (Muta, H. et al. (2013) “CD30: From Basic Research To Cancer Therapy,” Immunol. Res. 57(1-3):151-158); CD33 (Walter, R. B. et al. (2012) “Acute myeloid leukemia stem cells and CD33-targeted immunotherapy,” Blood 119(26):6198-6208); CD36 (Ge, Y. 2005 Lab Hematol. 11(1):31-7); CD40/CD154 (Messmer, D. et al. 2005 Ann NY Acad Sci. 1062:51-60); CD45 (Jurcic, J. G. 2005 Curr Oncol Rep. 7(5):339-46); CD56 (Bataille, R. 2006 Haematologica 91(9):1234-40); CD46 (U.S. Pat. No. 7,148,038; PCT Publication No. WO 03/032814; Russell, S. et al. (2004) “CD46: A Complement Regulator And Pathogen Receptor That Mediates Links Between Innate And Acquired Immune Function,” Tissue Antigens 64(2):111-118); CD52 (Hoelzer, D. et al. (2013) “Targeted therapy with monoclonal antibodies in acute lymphoblastic leukemia,” Curr. Opin. Oncol. 25(6):701-706); CD79a/CD79b (Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):139-48; Chu, P. G. et al. 2001 Appl Immunohistochem Mol Morphol. 9(2):97-106); CD103 (Troussard, X. et al. 1998 Hematol Cell Ther. 40(4):139-48); CD317 (Palma, G. et al. (2012) “Plasmacytoids Dendritic Cells Are A Therapeutic Target In Anticancer Immunity,” Biochim. Biophys. Acta. 1826(2):407-414; CDK4 (Lee, Y. M. et al. 2006 Cell Cycle 5(18):2110-4); CEA (carcinoembryonic antigen; Mathelin, C. 2006 Gynecol Obstet Fertil. 34(7-8):638-46; Tellez-Avila, F. I. et al. 2005 Rev Invest Clin. 57(6):814-9); CEACAM5 and CEACAM6 (PCT Publication No. WO 2011/034660; Zheng, C. et al. (2011) “A Novel Anti-CEACAM5 Monoclonal Antibody, CC4, Suppresses Colorectal Tumor Growth and Enhances NK Cells-Mediated Tumor Immunity,” PLoS One 6(6):e21146, pp. 1-11); CO17-1A (Adkins, J. C. et al. (1998) “Edrecolomab (Monoclonal Antibody 17-1A),” Drugs 56(4):619-626; CO-43 (blood group Leb) and CO-514 (blood group Lea) (Garratty, G. (1995) “Blood Group Antigens As Tumor Markers, Parasitic/Bacterial/Viral Receptors, And Their Association With Immunologically Important Proteins,” Immunol. Invest. 24(1-2):213-232; CTLA-1 and CTLA-4 (Peggs, K. S. et al. 2006 Curr Opin Immunol. 18(2):206-13); Cytokeratin 8 (PCT Publication No. WO 03/024191); antigen D1.1 (Dao, T. et al. (2009) “Identification Of A Human Cyclin D1-Derived Peptide That Induces Human Cytotoxic CD4 T Cells,” PLoS One. 4(8):e6730); DR5 (Abdulghani, J. et al. (2010) “TRAIL Receptor Signaling And Therapeutics,” Expert Opin. Ther. Targets 14(10):1091-1108; Andera, L. (2009) “Signaling Activated By The Death Receptors Of The TNFR Family,” Biomed. Pap. Med. Fac. Univ. Palacky Olomouc Czech. Repub. 153(3):173-180; Carlo-Stella, C. et al. (2007) “Targeting TRAIL Agonistic Receptors for Cancer Therapy,” Clin, Cancer 13(8):2313-2317; Chaudhari, B. R. et al. (2006) “Following the TRAIL to Apoptosis,” Immunologic Res. 35(3):249-262); E1 series (blood group B); EGF-R (epidermal growth factor receptor; Adenis, A. et al. 2003 Bull Cancer. 90 Spec No:S228-32); Ephrin receptors (and in particular EphA2 (U.S. Pat. No. 7,569,672; PCT Publication No. WO 06/084226); Erb (ErbB1; ErbB3; ErbB4; Zhou, H. et al. 2002 Oncogene 21(57):8732-40; Rimon, E. et al. 2004 Int J Oncol. 24(5):1325-38); lung adenocarcinoma antigen F3 (Greulich, H. et al. (2012) “Functional analysis of receptor tyrosine kinase mutations in lung cancer identifies oncogenic extracellular domain mutations of ERBB2,” Proc. Natl. Acad. Sci. (U.S.A.) 109(36):14476-14481); antigen FC10.2 (Loveless, W. et al. (1990) “Developmental Patterning Of The Carbohydrate Antigen FC10.2 During Early Embryogenesis In The Chick,” Development 108(1):97-106); GAGE (GAGE-1; GAGE-2; Akcakanat, A. et al. 2006 Int J Cancer. 118(1):123-8); GD2/GD3/GD49/GM2/GM3 (Livingston, P. O. et al. 2005 Cancer Immunol Immunother. 54(10):1018-25); GICA 19-9 (Herlyn et al. (1982) “Monoclonal Antibody Detection Of A Circulating Tumor-Associated Antigen. I. Presence Of Antigen In Sera Of Patients With Colorectal, Gastric, And Pancreatic Carcinoma,” J. Clin. Immunol. 2:135-140); gp37 (human leukemia T cell antigen ((Bhattacharya-Chatterjee et al. (1988) “Idiotype Vaccines Against Human T Cell Leukemia. II. Generation And Characterization Of A Monoclonal Idiotype Cascade (Ab1, Ab2, and Ab3),” J. Immunol. 141:1398-1403); gp75 (melanoma antigen) (Vijayasardahl et al. (1990) “The Melanoma Antigen Gp75 Is The Human Homologue Of The Mouse B (Brown) Locus Gene Product,” J. Exp. Med. 171(4):1375-1380); gp100 (Lotem, M. et al. 2006 J Immunother. 29(6):616-27); HER-2/neu (Kumar, Pal S et al. 2006 Semin Oncol. 33(4):386-91); human B-lymphoma antigen-CD20 (Reff et al. (1994) “Depletion Of B Cells In Vivo By A Chimeric Mouse Human Monoclonal Antibody To CD20,” Blood 83:435-445); human milk fat globule antigen; human papillomavirus-E6/human papillomavirus-E7 (DiMaio, D. et al. 2006 Adv Virus Res. 66:125-59; HMW-MAA (high molecular weight melanoma antigen) (Natali et al. (1987) “Immunohistochemical Detection Of Antigen In Human Primary And Metastatic Melanomas By The Monoclonal Antibody 140.240 And Its Possible Prognostic Significance,” Cancer 59:55-63; Mittelman et al. (1990) “Active Specific Immunotherapy In Patients With Melanoma. A Clinical Trial With Mouse Antiidiotypic Monoclonal Antibodies Elicited With Syngeneic Anti-High-Molecular-Weight-Melanoma-Associated Antigen Monoclonal Antibodies,” J. Clin. Invest. 86:2136-2144); I antigen (differentiation antigen) (Feizi (1985) “Demonstration By Monoclonal Antibodies That Carbohydrate Structures Of Glycoproteins And Glycolipids Are Onco-Developmental Antigens,” Nature 314:53-57) such as I(Ma) as found in gastric adenocarcinomas; Integrin Alpha-V-Beta-6 Integrinβ6 (ITGB6) (PCT Publication No. WO 03/087340); JAM-3 (PCT Publication No. WO 06/084078); Interleukin-13 Receptor α2 (IL13Rα2) (Bodhinayake, I. et al. (2014) “Targeting A Heterogeneous Tumor: The Promise Of The Interleukin-13 Receptor α2,” Neurosurgery 75(2):N18-9); JAM-3 (PCT Publication No. WO 06/084078); KID3 (PCT Publication No. WO 05/028498); KID3 (PCT Publication No. WO 05/028498); KID31 (PCT Publication No. WO 06/076584); KID31 (PCT Publication No. WO 06/076584); KS 1/4 pan-carcinoma antigen (Perez et al. (1989) “Isolation And Characterization Of A cDNA Encoding The Ks1/4 Epithelial Carcinoma Marker,” J. Immunol. 142:3662-3667; Möller et al. (1991) “Bispecific-Monoclonal-Antibody-Directed Lysis Of Ovarian Carcinoma Cells By Activated Human T Lymphocytes,” Cancer Immunol. Immunother. 33(4):210-216; Ragupathi, G. 2005 Cancer Treat Res. 123:157-80); KS 1/4 pan-carcinoma antigen (Perez et al. (1989) “Isolation And Characterization Of A cDNA Encoding The Ks1/4 Epithelial Carcinoma Marker,” J. Immunol. 142:3662-3667; Möller et al. (1991) “Bispecific-Monoclonal-Antibody-Directed Lysis Of Ovarian Carcinoma Cells By Activated Human T Lymphocytes,” Cancer Immunol. Immunother. 33(4):210-216; Ragupathi, G. 2005 Cancer Treat Res. 123:157-80); KSA (17-1A) (Ragupathi, G. 2005 Cancer Treat Res. 123:157-80); human lung carcinoma antigens L6 and L20 (Hellström et al. (1986) “Monoclonal Mouse Antibodies Raised Against Human Lung Carcinoma,” Cancer Res. 46:3917-3923); LEA (Velázquez-Márquez, N. et al. (2012) “Sialyl Lewis x expression in cervical scrapes of premalignant lesions,” J. Biosci. 37(6):999-1004); LUCA-2 (United States Patent Publication No. 2006/0172349; PCT Publication No. WO 06/083852); M1:22:25:8, M18, M39 (Cambier, L. et al. (2012) “M19 Modulates Skeletal Muscle Differentiation And Insulin Secretion In Pancreatic B-Cells Through Modulation Of Respiratory Chain Activity,” PLoS One 7(2):e31815; Pui, C. H. et al. (1991) “Characterization of childhood acute leukemia with multiple myeloid and lymphoid markers at diagnosis and at relapse,” Blood 78(5):1327-1337); MAGE (MAGE-1; MAGE-3; (Bodey, B. 2002 Expert Opin Biol Ther. 2(6):577-84); MART (Kounalakis, N. et al. 2005 Curr Oncol Rep. 7(5):377-82; Myl, MUC-1 (Mathelin, C. 2006 Gynecol Obstet Fertil. 34(7-8):638-46); MUM-1 (Castelli, C. et al. 2000 J Cell Physiol. 182(3):323-31); N-acetylglucosaminyltransferase (Dennis, J. W. 1999 Biochim Biophys Acta. 6; 1473(1):21-34); neoglycoprotein (Legendre, H. et al. (2004) “Prognostic Stratification Of Dukes B Colon Cancer By A Neoglycoprotein,” Int. J. Oncol. 25(2):269-276); NS-10; OFA-1 and OFA-2 (Takahashi, M. (1984) “A Study On Clinical Significance Of Oncofetal Antigen-1 In Gynecologic Tumors,” Nihon Sanka Fujinka Gakkai Zasshi. 36(12):2613-2618); Oncostatin M (Oncostatin Receptor Beta) (U.S. Pat. No. 7,572,896; PCT Publication No. WO 06/084092); p15 (Gil, J. et al. 2006 Nat Rev Mol Cell Biol. 7(9):667-77); PSA (prostate specific antigen; Cracco, C. M. et al. 2005 Minerva Urol Nefrol. 57(4):301-11); PSMA (Ragupathi, G. 2005 Cancer Treat Res. 123:157-80); PEMA (polymorphic epithelial mucin antigen) (Chu, N. J. et al. (2015) “Nonviral Oncogenic Antigens and the Inflammatory Signals Driving Early Cancer Development as Targets for Cancer Immunoprevention,” Clin. Cancer Res. 21(7):1549-1557); PIPA (U.S. Pat. No. 7,405,061; PCT Publication No. WO 04/043239); prostatic acid phosphate (Tailor et al. (1990) “Nucleotide Sequence Of Human Prostatic Acid Phosphatase Determined From A Full-Length cDNA Clone,” Nucl. Acids Res. 18(16):4928); R24 (Zhou, M. et al. (2008) “Constitutive Overexpression Of A Novel 21 Kda Protein By Hodgkin Lymphoma And Aggressive Non-Hodgkin Lymphomas,” Mol. Cancer 7:12); ROR1 (U.S. Pat. No. 5,843,749); Rabbani, H. et al. (2010) “Expression Of ROR1 In Patients With Renal Cancer—A Potential Diagnostic Marker,” Iran Biomed. J. 14(3):77-82); sphingolipids (Hakomori, S. (1998) “Cancer-Associated Glycosphingolipid Antigens: Their Structure, Organization, And Function,” Acta Anat. (Basel) 161(1-4):79-90; SSEA-1, SSEA-3 and SSEA-4 (Muramatsu, T. et al. (2004) “Carbohydrate Antigens Expressed On Stem Cells And Early Embryonic Cells,” Glycoconj. J. 21(1-2):41-45); sTn (Holmberg, L. A. 2001 Expert Opin Biol Ther. 1(5):881-91); T cell receptor derived peptide (Edelson (1998) “Cutaneous T-Cell Lymphoma: A Model For Selective Immunotherapy,” Cancer J Sci Am. 4:62-71); TsA7 (Hogg, R. J. et al. (1991) “A monoclonal antibody exhibiting reactivity with both X-hapten-and lactose-bearing glycolipids,” Tissue Antigens 37(1):33-38); TAG-72 (Yokota et al. (1992) “Rapid Tumor Penetration Of A Single-Chain Fv And Comparison With Other Immunoglobulin Forms,” Cancer Res. 52:3402-3408); TL5 (blood group A) (Gooi, H. C. et al. (1983) “Monoclonal antibody reactive with the human epidermal-growth-factor receptor recognizes the blood-group-A antigen,” Biosci. Rep. 3(11): 1045-1052); TNF-receptor (TNF-α receptor, TNF-β receptor; or TNF-γ receptor (van Horssen, R. et al. 2006 Oncologist. 11(4):397-408; Gardnerova, M. et al. 2000 Curr Drug Targets. 1(4):327-64); TRA-1-85 (blood group H) (Williams, B. P. et al. (1988) “Biochemical and genetic analysis of the OKa blood group antigen,” Immunogenetics 27(5):322-329); Transferrin Receptor (U.S. Pat. No. 7,572,895; PCT Publication No. WO 05/121179); TSTA tumor-specific transplantation antigen (Hellström et al. (1985) “Monoclonal Antibodies To Cell Surface Antigens Shared By Chemically Induced Mouse Bladder Carcinomas,” Cancer. Res. 45:2210-2188); VEGF-R (O'Dwyer. P. J. 2006 Oncologist. 11(9):992-8); and Y hapten, Le.sup.y (Durrant, L. G. et al. (1989) “Development Of An ELISA To Detect Early Local Relapse Of Colorectal Cancer,” Br. J. Cancer 60(4):533-537).
(50) Exemplary antibodies that immunospecifically bind to an epitope of a Disease-Associated Antigen that may be used to provide the Variable Light Chain Domains, Variable Heavy Chain Domains, Antibody Light Chains or Antibody Heavy Chains of the Tri-Specific Binding Molecules of the present invention are presented in Table 2.
(51) TABLE-US-00002 TABLE 2 Antibody Disease-Associated Name Antigen Therapeutic Target Application 3F8 Gd2 Neuroblastoma 8H9 B7-H3 Neuroblastoma, Sarcoma, Metastatic Brain Cancers Abagovomab CA-125 Ovarian Cancer Abciximab CD41 Platelet Aggregation Inhibitor Actoxumab Clostridium Clostridium Difficile Infection Difficile Adalimumab TNF-A Rheumatoid Arthritis, Crohn's Disease, Plaque Psoriasis, Psoriatic Arthritis, Ankylosing Spondylitis, Juvenile Idiopathic Arthritis, Hemolytic Disease Of The Newborn Adecatumumab Epcam Prostate And Breast Cancer Aducanumab Beta-Amyloid Alzheimer's Disease Afelimomab TNF-A Sepsis Afutuzumab CD20 Lymphoma Alacizumab VEGFR2 Cancer Ald518 Il-6 Rheumatoid Arthritis Alemtuzumab CD52 Multiple Sclerosis Alirocumab NARP-1 Hypercholesterolemia Altumomab CEA Colorectal Cancer Amatuximab Mesothelin Cancer Anatumomab TAG-72 Non-Small Cell Lung Carcinoma Mafenatox Anifrolumab Interferon A/B Receptor Systemic Lupus Erythematosus Anrukinzumab IL-13 Cancer Apolizumab HLA-DR Hematological Cancers Arcitumomab CEA Gastrointestinal Cancer Aselizumab L-Selectin (CD62L) Severely Injured Patients Atinumab RTN4 Cancer Atlizumab IL-6 Receptor Rheumatoid Arthritis Atorolimumab Rhesus Factor Hemolytic Disease Of The Newborn Bapineuzumab Beta-Amyloid Alzheimer's Disease Basiliximab CD25 Prevention Of Organ Transplant Rejections Bavituximab Phosphatidylserine Cancer, Viral Infections Bectumomab CD22 Non-Hodgkin's Lymphoma (Detection) Belimumab BAFF Non-Hodgkin Lymphoma Benralizumab CD125 Asthma Bertilimumab CCL11 (Eotaxin-1) Severe Allergic Disorders Besilesomab CEA-Related Antigen Inflammatory Lesions And Metastases (Detection) Bevacizumab VEGF-A Metastatic Cancer, Retinopathy Of Prematurity Bezlotoxumab Clostridium difficile Clostridium difficile Infection Biciromab Fibrin II, Beta Chain Thromboembolism (Diagnosis) Bimagrumab ACVR2B Myostatin Inhibitor Bivatuzumab CD44 V6 Squamous Cell Carcinoma Blinatumomab CD19 Cancer Blosozumab SOST Osteoporosis Brentuximab CD30 (TNFRSF8) Hematologic Cancers Briakinumab IL-12, IL-23 Psoriasis, Rheumatoid Arthritis, Inflammatory Bowel Diseases, Multiple Sclerosis Brodalumab IL-17 Inflammatory Diseases Canakinumab IL-1 Rheumatoid Arthritis Cantuzumab Mucin Canag Colorectal Cancer Mertansine Cantuzumab MUC1 Cancers Caplacizumab VWF Cancers Capromab Prostatic Carcinoma Prostate Cancer (Detection) Cells Carlumab MCP-1 Oncology/Immune Indications Catumaxomab Epcam, CD3 Ovarian Cancer, Malignant Ascites, Gastric Cancer Cc49 Tag-72 Tumor Detection Certolizumab TNF-A Crohn's Disease Cetuximab EGFR Metastatic Colorectal Cancer And Head And Neck Cancer Ch.14.18 Undetermined Neuroblastoma Citatuzumab Epcam Ovarian Cancer And Other Solid Tumors Cixutumumab IGF-1 Receptor Solid Tumors Clazakizumab Oryctolagus Cuniculus Rheumatoid Arthritis Clivatuzumab MUC1 Pancreatic Cancer Conatumumab TRAIL-R2 Cancer Concizumab TFPI Bleeding Crenezumab 1-40-B-Amyloid Alzheimer's Disease Cr6261 Influenza A Infectious Disease/Influenza A Hemagglutinin Dacetuzumab CD40 Hematologic Cancers Daclizumab CD25 Prevention Of Organ Transplant Rejections Dalotuzumab Insulin-Like Growth Cancer Factor I Receptor Daratumumab CD38 Cancer Demcizumab DLL4 Cancer Denosumab RANKL Osteoporosis, Bone Metastases Detumomab B-Lymphoma Cell Lymphoma Dorlimomab Undetermined Cancer Aritox Drozitumab DR5 Cancer Duligotumab HER3 Cancer Dupilumab IL4 Atopic Diseases Dusigitumab ILGF2 Cancer Ecromeximab GD3 Ganglioside Malignant Melanoma Eculizumab C5 Paroxysmal Nocturnal Hemoglobinuria Edobacomab Endotoxin Sepsis Caused By Gram-Negative Bacteria Edrecolomab Epcam Colorectal Carcinoma Efalizumab LFA-1 (CD11a) Psoriasis (Blocks T Cell Migration) Efungumab Hsp90 Invasive Candida Infection Eldelumab Interferon-Gamma- Crohn's Disease, Ulcerative Colitis Induced Protein Elotuzumab SLAMF7 Multiple Myeloma Elsilimomab IL-6 Cancer Enavatuzumab TWEAK Receptor Cancer Enlimomab ICAM-1 (CD54) Cancer Enokizumab IL9 Asthma Enoticumab DLL4 Cancer Ensituximab 5AC Cancer Epitumomab Episialin Cancer Cituxetan Epratuzumab CD22 Cancer, SLE Erlizumab ITGB2 (CD18) Heart Attack, Stroke, Traumatic Shock Ertumaxomab HER2/Neu, CD3 Breast Cancer Etaracizumab Integrin A.sub.vβ.sub.3 Melanoma, Prostate Cancer, Ovarian Cancer Etrolizumab Integrin A.sub.7 B.sub.7 Inflammatory Bowel Disease Evolocumab PCSK9 Hypocholesterolemia Exbivirumab Hepatitis B Surface Hepatitis B Antigen Fanolesomab CD15 Appendicitis (Diagnosis) Faralimomab Interferon Receptor Cancer Farletuzumab Folate Receptor 1 Ovarian Cancer Fasinumab.sup.[51] HNGF Cancer Fbta05 CD20 Chronic Lymphocytic Leukaemia Felvizumab Respiratory Syncytial Respiratory Syncytial Virus Infection Virus Fezakinumab IL-22 Rheumatoid Arthritis, Psoriasis Ficlatuzumab HGF Cancer Figitumumab IGF-1 Receptor Adrenocortical Carcinoma, Non-Small Cell Lung Carcinoma Flanvotumab TYRP1 Melanoma (Glycoprotein 75) Fontolizumab IFN-γ Crohn's Disease Foravirumab Rabies Virus Rabies (Prophylaxis) Glycoprotein Fresolimumab TGF-B Idiopathic Pulmonary Fibrosis, Focal Segmental Glomerulosclerosis, Cancer Fulranumab NGF Pain Futuximab EGFR Cancer Galiximab CD80 B Cell Lymphoma Ganitumab IGF-I Cancer Gantenerumab Beta-Amyloid Alzheimer's Disease Gavilimomab CD147 (Basigin) Graft-Versus-Host Disease Gemtuzumab CD33 Acute Myelogenous Leukemia Ozogamicin Gevokizumab IL-1β Diabetes Girentuximab Carbonic Anhydrase 9 Clear Cell Renal Cell Carcinoma.sup.[64] (CA-IX) Glembatumumab GPNMB Melanoma, Breast Cancer Vedotin Golimumab TNF-A Rheumatoid Arthritis, Psoriatic Arthritis, Ankylosing Spondylitis Gomiliximab CD23 (Ige Receptor) Allergic Asthma Guselkumab IL13 Psoriasis Ibritumomab CD20 Non-Hodgkin's Lymphoma Tiuxetan Icrucumab VEGFR-1 Cancer Igovomab CA-125 Ovarian Cancer (Diagnosis) Imab362 Cldn1 8.2 Gastrointestinal Adenocarcinomas And Pancreatic Tumor Imgatuzumab EGFR Cancer Inclacumab Selectin P Cancer Indatuximab SDC1 Cancer Ravtansine Infliximab TNF-A Rheumatoid Arthritis, Ankylosing Spondylitis, Psoriatic Arthritis, Psoriasis, Crohn's Disease, Ulcerative Colitis Intetumumab CD51 Solid Tumors (Prostate Cancer, Melanoma) Inolimomab CD25 (A Chain Of IL-2 Graft-Versus-Host Disease Receptor) Inotuzumab CD22 Cancer Ozogamicin Ipilimumab CD152 Melanoma Iratumumab CD30 (TNFRSF8) Hodgkin's Lymphoma Itolizumab CD6 Cancer Ixekizumab IL-17A Autoimmune Diseases Keliximab CD4 Chronic Asthma Labetuzumab CEA Colorectal Cancer Lambrolizumab PDCD1 Antineoplastic Agent Lampalizumab CFD Cancer Lebrikizumab IL-13 Asthma Lemalesomab NCA-90 Diagnostic Agent (Granulocyte Antigen) Lerdelimumab TGF Beta 2 Reduction Of Scarring After Glaucoma Surgery Lexatumumab TRAIL-R2 Cancer Libivirumab Hepatitis B Surface Hepatitis B Antigen Ligelizumab IGHE Cancer Lintuzumab CD33 Cancer Lirilumab KIR2D Cancer Lodelcizumab PCSK9 Hypercholesterolemia Lorvotuzumab CD56 Cancer Lucatumumab CD40 Multiple Myeloma, Non-Hodgkin's Lymphoma, Hodgkin's Lymphoma Lumiliximab CD23 Chronic Lymphocytic Leukemia Mapatumumab TRAIL-R1 Cancer Margetuximab Ch4d5 Cancer Mavrilimumab GMCSF Receptor A- Rheumatoid Arthritis Chain Matuzumab EGFR Colorectal, Lung And Stomach Cancer Mepolizumab IL-5 Asthma And White Blood Cell Diseases Metelimumab TGF Beta 1 Systemic Scleroderma Milatuzumab CD74 Multiple Myeloma And Other Hematological Malignancies Minretumomab TAG-72 Cancer Mitumomab GD3 Ganglioside Small Cell Lung Carcinoma Mogamulizumab CCR4 Cancer Morolimumab Rhesus Factor Cancer Motavizumab Respiratory Syncytial Respiratory Syncytial Virus (Prevention) Virus Moxetumomab CD22 Cancer Pasudotox Muromonab-CD3 CD3 Prevention Of Organ Transplant Rejections Nacolomab C242 Antigen Colorectal Cancer Tafenatox Namilumab CSF2 Cancer Naptumomab 5T4 Non-Small Cell Lung Carcinoma, Renal Cell Estafenatox Carcinoma Narnatumab RON Cancer Natalizumab Integrin A4 Multiple Sclerosis, Crohn's Disease Nebacumab Endotoxin Sepsis Necitumumab EGFR Non-Small Cell Lung Carcinoma Nerelimomab TNF-A Cancer Nesvacumab Angiopoietin 2 Cancer Nimotuzumab EGFR Squamous Cell Carcinoma, Head And Neck Cancer, Nasopharyngeal Cancer, Glioma Nivolumab Igg4 Cancer Nofetumomab Undetermined Cancer Merpentan Ocaratuzumab CD20 Cancer Ocrelizumab CD20 Rheumatoid Arthritis, Lupus Erythematosus Odulimomab LFA-1 (CD11a) Prevention Of Organ Transplant Rejections, Immunological Diseases Ofatumumab CD20 Chronic Lymphocytic Leukemia Olaratumab PDGF-R A Cancer Olokizumab IL6 Cancer Onartuzumab Human Scatter Factor Cancer Receptor Kinase Ontuxizumab TEM1 Cancer Oportuzumab Epcam Cancer Monatox Oregovomab CA-125 Ovarian Cancer Orticumab Oxldl Cancer Otlertuzumab CD37 Cancer Oxelumab OX-40 Asthma Ozanezumab NOGO-A ALS And Multiple Sclerosis Ozoralizumab TNF-A Inflammation Pagibaximab Lipoteichoic Acid Sepsis (Staphylococcus) Palivizumab F Protein Of Respiratory Syncytial Virus (Prevention) Respiratory Syncytial Virus Panitumumab EGFR Colorectal Cancer Pankomab Tumor Specific Ovarian Cancer Glycosylation Of MUC1 Panobacumab Pseudomonas Pseudomonas Aeruginosa Infection Aeruginosa Parsatuzumab EGFL7 Cancer Pascolizumab IL-4 Asthma Pateclizumab LTA TNF Patritumab HER3 Cancer Pemtumomab MUC1 Cancer Perakizumab IL17A Arthritis Pertuzumab HER2/Neu Cancer Pexelizumab C5 Reduction Of Side-Effects Of Cardiac Surgery Pidilizumab PD -1 Cancer And Infectious Diseases Pinatuzumab CD22 Cancer Vedotin Pintumomab Adenocarcinoma Adenocarcinoma Antigen Placulumab Human TNF Cancer Polatuzumab CD79B Cancer Vedotin Ponezumab Human Beta-Amyloid Alzheimer's Disease Pritoxaximab E. Coli Shiga Toxin Cancer Type-1 Pritumumab Vimentin Brain Cancer Pro 140 Ccr5 HIV Infection Quilizumab IGHE Cancer Racotumomab N-Glycolylneuraminic Cancer Acid Radretumab Fibronectin Extra Cancer Domain-B Rafivirumab Rabies Virus Rabies (Prophylaxis) Glycoprotein Ramucirumab VEGFR2 Solid Tumors Ranibizumab VEGF-A Macular Degeneration (Wet Form) Raxibacumab Anthrax Toxin, Anthrax (Prophylaxis And Treatment) Protective Antigen Regavirumab Cytomegalovirus Cytomegalovirus Infection Glycoprotein B Reslizumab IL-5 Inflammations Of The Airways, Skin And Gastrointestinal Tract Rilotumumab HGF Solid Tumors Rituximab CD20 Lymphomas, Leukemias, Some Autoimmune Disorders Robatumumab IGF-1 Receptor Cancer Roledumab RHD Cancer Romosozumab Sclerostin Osteoporosis Rontalizumab IFN-α Systemic Lupus Erythematosus Rovelizumab CD11, CD18 Haemorrhagic Shock Ruplizumab CD154 (CD40L) Rheumatic Diseases Samalizumab CD200 Cancer Sarilumab IL6 Rheumatoid Arthritis, Ankylosing Spondylitis Satumomab TAG-72 Cancer Pendetide Secukinumab IL-17A Uveitis, Rheumatoid Arthritis Psoriasis Seribantumab ERBB3 Cancer Setoxaximab E. Coli Shiga Toxin Cancer Type-1 Sevirumab Cytomegalovirus Cytomegalovirus Infection Sibrotuzumab FAP Cancer Sgn-CD19a CD19 Acute Lymphoblastic Leukemia And B Cell Non-Hodgkin Lymphoma Sgn-CD33a CD33 Acute Myeloid Leukemia Sifalimumab IFN-A SLE, Dermatomyositis, Polymyositis Siltuximab IL-6 Cancer Simtuzumab LOXL2 Fibrosis Siplizumab CD2 Psoriasis, Graft-Versus-Host Disease (Prevention) Sirukumab IL-6 Rheumatoid Arthritis Solanezumab Beta-Amyloid Alzheimer's Disease Solitomab Epcam Cancer Sonepcizumab Sphingosine-1- Choroidal And Retinal Neovascularization Phosphate Sontuzumab Episialin Cancer Stamulumab Myostatin Muscular Dystrophy Sulesomab NCA-90 Osteomyelitis (Granulocyte Antigen) Suvizumab HIV-1 Viral Infections Tabalumab BAFF B Cell Cancers Tacatuzumab Alpha-Fetoprotein Cancer Tetraxetan Tadocizumab Integrin AIIBβ3 Percutaneous Coronary Intervention Tanezumab NGF Pain Taplitumomab CD19 Cancer Paptox Tefibazumab Clumping Factor A Staphylococcus Aureus Infection Telimomab Undetermined Cancer Tenatumomab Tenascin C Cancer Teneliximab CD40 Cancer Teprotumumab CD221 Hematologic Tumors Ticilimumab CTLA-4 Cancer Tildrakizumab IL23 Immunologically Mediated Inflammatory Disorders Tigatuzumab TRAIL-R2 Cancer Tnx-650 Il-13 Hodgkin's Lymphoma Tocilizumab IL-6 Receptor Rheumatoid Arthritis Toralizumab CD154 (CD40L) Rheumatoid Arthritis, Lupus Nephritis Tositumomab CD20 Follicular Lymphoma Tovetumab CD140a Cancer Tralokinumab IL-13 Asthma Trastuzumab HER2/Neu Breast Cancer Trbs07 Gd2 Melanoma Tremelimumab CTLA-4 Cancer Tucotuzumab Epcam Cancer Celmoleukin Tuvirumab Hepatitis B Virus Chronic Hepatitis B Ublituximab MS4A1 Cancer Urelumab 4-1BB Cancer Urtoxazumab Escherichia Coli Diarrhoea Caused By E. Coli Ustekinumab IL-12, IL-23 Multiple Sclerosis, Psoriasis, Psoriatic Arthritis Vantictumab Frizzled Receptor Cancer Vapaliximab AOC3 (VAP-1) Cancer Vatelizumab ITGA2 Cancer Vedolizumab Integrin A4β7 Crohn's Disease, Ulcerative Colitis Veltuzumab CD20 Non-Hodgkin's Lymphoma Vepalimomab AOC3 (VAP-1) Inflammation Vesencumab NRP1 Cancer Volociximab Integrin A5β1 Solid Tumors Vorsetuzumab CD70 Cancer Votumumab Tumor Antigen Colorectal Tumors CTAA16.88 Zalutumumab EGFR Squamous Cell Carcinoma Of The Head And Neck Zatuximab HER1 Cancer Ziralimumab CD147 Cancer Zolimomab CD5 Systemic Lupus Erythematosus, Aritox Graft-Versus-Host Disease
(52) A Disease-Associated Antigen may be characteristically expressed in a pathogen-infected cell or in a cancer cells and processed and displayed on a cell surface in the context of an MHC complex, but not characteristically expressed in a normal cell. Antibodies that recognize such peptide fragments are known in the art or can be generated using well-known methods, including those described in WO 2002/014870.
(53) The polypeptides of the Tri-Specific Binding Molecules of the present invention can be adapted to contain the Variable Light or Variable Heavy Domains (the case of the first and second polypeptide chains of such molecules) or the heavy or light chains (in the case of the third and fourth polypeptide chains of such molecules) of such antibodies. Thus, the above-described antibodies may be used to produce Tri-Specific Binding Molecules of the present invention whose Site A, Site B or Site C is capable of binding to an epitope of such Disease-Associated Antigens].
(54) B. Preferred Structural Attributes
(55) Typically, the Tri-Specific Binding Molecules of the present molecules will comprise four different polypeptide chains, each having an amino terminus and a carboxyl terminus (see
(56) The various immunoglobulin Domains of such molecules may be derived from immunoglobulins of any isotype or allotype including, but not limited to, IgA, IgD, IgG, IgE and IgM. In preferred embodiments, as discussed below such immunoglobulins are derived from IgG immunoglobulins. In specific embodiments, the IgG isotype used is IgG1, however IgG of other isotypes (e.g., IgG2, IgG3 or IgG4 or an allotype thereof) may be employed. When an IgG4 Fc Domain is utilized, the present invention encompasses the introduction of a stabilizing mutation such as S228P, as numbered by the EU index as set forth in Kabat (Lu et al., (2008) “The Effect Of A Point Mutation On The Stability Of Igg4 As Monitored By Analytical Ultracentrifugation,” J. Pharmaceutical Sciences 97:960-969) to reduce the incidence of strand exchange. Other stabilizing mutations known in the art may be introduced into an IgG4 Fc Domain (Peters, P et al., (2012) “Engineering an Improved IgG4 Molecule with Reduced Disulfide Bond Heterogeneity and Increased Fab Domain Thermal Stability,” J. Biol. Chem., 287:24525-24533; PCT Patent Publication No: WO 2008/145142). Since the N297A, L234A, L235A and D265A substitutions abolish effector function, in circumstances in which effector function is desired, these substitutions would preferably not be employed.
(57)
(58) As indicated above, one of Epitope I, Epitope II or Epitope III that is bound by the Binding Domains of such exemplary preferred Tri-Specific Binding Molecules may be an epitope of a Disease-Associated Antigen. Most preferably, the Binding Domain of such exemplary preferred Tri-Specific Binding Molecule that binds to such epitope of a Disease-Associated Antigen is a Fab-Type Binding Domain. The polypeptides of such Tri-Specific Binding Molecules of the present invention can be adapted to contain the Variable Light or Variable Heavy Domains (the case of the first and second polypeptide chains of such molecules) or the heavy or light chains (in the case of the third and fourth polypeptide chains of such molecules). Thus, such antibodies may be used to produce Tri-Specific Binding Molecules of the present invention whose Site A, Site B or Site C is capable of binding to an epitope of such Disease-Associated Antigens.
(59) 1. Preferred First Polypeptide Chain
(60) A first polypeptide chain of a preferred Tri-Specific Binding Molecule of the present invention will comprise a Variable Light Chain Domain capable of binding to Epitope I (VL.sub.I), a Variable Heavy Chain Domain capable of binding to Epitope II (VH.sub.II), a cysteine residue or Cysteine-Containing Domain and a Heterodimer-Promoting Domain and a CH2-CH3 Domain.
(61) Since the Variable Light Chain and Variable Heavy Chain Domains of the first polypeptide are directed toward different epitopes, they cannot associate together to form a Binding Domain that is able to bind either Epitope I or Epitope II. The Variable Light Chain and Variable Heavy Chain Domains of the first polypeptide are spaced apart from one another by an intervening linker peptide that is sufficiently short as to substantially prevent the association of these Domains. An exemplary linker, termed “Linker 1,” has the sequence (SEQ ID NO:1): GGGSGGGG.
(62) The Variable Heavy Chain Domain of the first polypeptide and the Heterodimer-Promoting Domain of that polypeptide are preferably spaced apart from one another by an intervening linker peptide that contains 1, 2, 3 or more cysteine residues. A preferred Cysteine-Containing Domain (“Linker 2”) has the sequence is SEQ ID NO:2: GGCGGG. Alternatively, or additionally, a Cysteine-Containing Heterodimer-Promoting Domain, as described below, may be used.
(63) Thus, in some embodiments, one or more cysteine residues (or Cysteine-Containing Domain, such as a cysteine-containing peptide linker) will be incorporated into the first polypeptide chain (and/or into the second, third, fourth or further polypeptide chains of the Tri-Specific Binding Molecules of the present invention) in order to covalently bond two such polypeptide chains together, whereas in equivalent embodiments such cysteine residue(s) may be incorporated into a Heterodimer-Promoting Domain, or into another domain in order to achieve the same result.
(64) The Heterodimer-Promoting Domain of the first polypeptide and the Heterodimer-Promoting Domain of the second polypeptide are coordinately selected. The Domains differ from one another and are designed to associate with one another so as to promote the association of the first and second polypeptide chains. For example, one of the Heterodimer-Promoting Domains will be engineered to have a negative charge at pH 7, while the other of the two polypeptide chains will be engineered to have a positive charge at pH 7. The presence of such charged Domains promotes association between the first and second polypeptides, and thus fosters heterodimerization. It is immaterial which Heterodimer-Promoting Domains is provided to which chain, as long as the Domains employed on the first and second polypeptide chains differ so as to foster heterodimerization between such chains.
(65) In a preferred embodiment, the Heterodimer-Promoting Domain of the first polypeptide chain is either an “E-coil” Domain (SEQ ID NO:3): EVAALEK{right arrow over (E)}VAALEK{right arrow over (E)}VAALEKEVAALEK, or a “K-coil” Domain (SEQ ID NO:4): KVAALKEKVAALKEKVAALKEKVAALKE. More preferably, the first polypeptide chain will possess an “E-coil” Domain. The first polypeptide chain may contain only a single such coil separator, or it may contain more than one such coil separators (e.g., two separators) and can be the same charge preferably of opposite charge.
(66) In a preferred embodiment, the Heterodimer-Promoting Domain of the first polypeptide chain will comprise either four tandem “E-coil” helical domains (SEQ ID NO:3: EVAALEK-EVAALEK-EVAALEK-EVAALEK), whose glutamate residues will form a negative charge at pH 7, or four tandem “K-coil” domains (SEQ ID NO:4: KVAALKE-KVAALKE-KVAALKE-KVAALKE), whose lysine residues will form a positive charge at pH 7. The presence of such charged domains promotes association between the first and second polypeptide chains, and thus fosters heterodimerization. Especially preferred is a Heterodimer-Promoting Domain in which one of the four tandem “E-coil” helical domains of SEQ ID NO:3 or SEQ ID NO:4 has been modified to contain a cysteine residue: EVAACEK-EVAALEK-EVAALEK-EVAALEK (SEQ ID NO:115) or in which one of the four tandem “K-coil” helical domains of SEQ ID NO:4 has been modified to contain a cysteine residue: KVAACKE-KVAALKE-KVAALKE-KVAALKE (SEQ ID NO:116). Other E-coil and K-coil Domains that may be employed in accordance with the present invention are disclosed in: Woolfson, D. N. (2005) “The Design Of Coiled-Coil Structures And Assemblies,” Adv. Prot. Chem. 70:79-112, Straussman, R. et al. (2007) “Kinking the Coiled Coil Negatively Charged Residues at the Coiled-coil Interface,” J. Molec. Biol. 366:1232-1242; Apostolovic, B. et al. (2008) “pH-Sensitivity of the E3/K3 Heterodimeric Coiled Coil,” Biomacromolecules 9:3173-3180; Amdt, K. M. et al. (2001) “Helix-stabilized Fv (hsFv) Antibody Fragments: Substituting the Constant Domains of a Fab Fragment for a Heterodimeric Coiled-coil Domain,” J. Molec. Biol. 312:221-228; Steinkruger, J. D. et al. (2012) “The d′--d--d′ Vertical Triad is Less Discriminating Than the a′--a--a′ Vertical Triad in the Antiparallel Coiled-coil Dimer Motif,” J. Amer. Chem. Soc. 134(5):2626-2633; Ghosh, T. S. et al. (2009) “End-To-End And End-To-Middle Interhelical Interactions: New Classes Of Interacting Helix Pairs In Protein Structures,” Acta Crystallographica D65:1032-1041; Grigoryan, G. et al. (2008) “Structural Specificity In Coiled-Coil Interactions,” Curr. Opin. Struc. Biol. 18:477-483; Boucher, C. et al. (2010) “Protein Detection By Western Blot Via Coiled-Coil Interactions,” Analytical Biochemistry 399:138-140; Cachia, P. J. et al. (2004) “Synthetic Peptide Vaccine Development: Measurement Of Polyclonal Antibody Affinity And Cross-Reactivity Using A New Peptide Capture And Release System For Surface Plasmon Resonance Spectroscopy,” J. Mol. Recognit. 17:540-557; De Crescenzo, G. D. et al. (2003) “Real-Time Monitoring of the Interactions of Two-Stranded de novo Designed Coiled-Coils: Effect of Chain Length on the Kinetic and Thermodynamic Constants of Binding,” Biochemistry 42:1754-1763; Tripet, B. et al. (2002) “Kinetic Analysis of the Interactions between Troponin C and the C-terminal Troponin I Regulatory Region and Validation of a New Peptide Delivery/Capture System used for Surface Plasmon Resonance,” J. Molec. Biol. 323:345-362; and Zeng, Y. et al. (2008) “A Ligand-Pseudoreceptor System Based On de novo Designed Peptides For The Generation Of Adenoviral Vectors With Altered Tropism,” J. Gene Med. 10:355-367.
(67) Preferably, the employed Heterodimer-Promoting Domain and the CH2-CH3 Domain of the first polypeptide chain are spaced apart from one another by an intervening cysteine-containing linker peptide that provides improved stabilization to the Heterodimer-Promoting Domain. A preferred cysteine-containing linker peptide (“Linker 3”) has the amino acid sequence (SEQ ID NO:5): DKTHTCPPCP.
(68) The amino acid sequence of a wild-type CH2-CH3 Domain is as follows (positioning is as in the EU index as in Kabat et al. (1992) S
(69) TABLE-US-00003 | CH2.fwdarw. APELLGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT 231 240 250 260 270 280 ←CH2 | CH3.fwdarw. KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA K GQPREPQVY 290 300 310 320 330 340 TLPPSREEMT KNQVSLTCLV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLYSK 350 360 370 380 390 400 ←CH3 | LTVDKSRWQQ GNVFSCSVMH EALHNHYTQK SLSLSPGK 410 420 430 440
(70) In some expression systems the C-terminal amino acid residue of the CH3 Domain may be post-translationally removed. Accordingly, the C-terminal residue of the CH3 Domain is an optional amino acid residue.
(71) The CH2-CH3 Domain of the first polypeptide chain will preferably be modified to promote heterodimerization between the CH2-CH3 Domain of the third polypeptide chain (see below). For example, an amino acid substitution (preferably a substitution with an amino acid comprising a bulky side group forming a ‘knob’, e.g., tryptophan) can be introduced into the CH2 or CH3 Domain of the first polypeptide chain such that steric interference will prevent interaction with a similarly mutated Domain and will obligate the mutated Domain to pair with a Domain into which a complementary, or accommodating mutation has been engineered, i.e., ‘the hole’ (e.g., a substitution with glycine). Such sets of mutations can be engineered into any pair of polypeptides comprising the diabody molecule, and further, engineered into any portion of the polypeptides chains of said pair. Methods of protein engineering to favor heterodimerization over homodimerization are well-known in the art, in particular with respect to the engineering of immunoglobulin-like molecules, and are encompassed herein (see e.g., U.S. Pat. No. 7,695,936 and Patent Publication 2007/0196363, Ridgway et al. (1996) “‘Knobs-Into-Holes’ Engineering Of Antibody CH3 Domains For Heavy Chain Heterodimerization,” Protein Engr. 9:617-621, Atwell et al. (1997) “Stable Heterodimers From Remodeling The Domain Interface Of A Homodimer Using A Phage Display Library,” J. Mol. Biol. 270: 26-35, and Xie et al. (2005) “A New Format Of Bispecific Antibody: Highly Efficient Heterodimerization, Expression And Tumor Cell Lysis,” J. Immunol. Methods 296:95-101; each of which is hereby incorporated herein by reference in its entirety. A preferred knob is created by modifying a native IgG Fc Domain to contain the modification T366W. A preferred hole is created by modifying a native IgG Fc Domain to contain the modification T366S, L368A and Y407V. To aid in purifying the Tri-Specific Binding Molecules of the present invention, the polypeptide chain containing the hole mutations additionally comprises a substitution at position 435 (H435R) to remove the Protein A binding site. Thus, homodimers of polypeptides containing the hole mutations will not bind to protein A, whereas the Tri-Specific Binding Molecules that form as a result of knob and hole containing heterodimers will retain its ability to bind protein A via the protein A binding site on the polypeptide chain containing the knob mutation.
(72) The CH2-CH3 Domain of the first polypeptide chain will preferably be modified to reduce or abrogate binding of the Fc to Fc receptors. Such mutations are well-known in the art and include substitutions at positions 234, 235, 265 and 297 (see U.S. Pat. No. 5,624,821). Preferred substitutions include one or more of L234A and L235A, D265A and N297Q.
(73) TABLE-US-00004 Preferably, therefore the CH2-CH3 Domain of the first polypeptide chain will have the “knob- bearing” sequence (SEQ ID NO: 7): APEAAGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSREEMTK NQVSLWCLVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLYSKL TVDKSRWQQG NVFSCSVMHE ALHNHYTQKS LSLSPGK or the “hole-bearing” sequence with an H435R substitution to abrogate Protein A binding (SEQ ID NO: 8): APEAAGGPSV FLFPPKPKDT LMISRTPEVT CVVVDVSHED PEVKFNWYVD GVEVHNAKTK PREEQYNSTY RVVSVLTVLH QDWLNGKEYK CKVSNKALPA PIEKTISKAK GQPREPQVYT LPPSREEMTK NQVSLSCAVK GFYPSDIAVE WESNGQPENN YKTTPPVLDS DGSFFLVSKL TVDKSRWQQG NVFSCSVMHE ALHNRYTQKS LSLSPGK
(74) It is preferred that the first polypeptide chain will have a “knob-bearing” CH2-CH3 sequence, such as that of SEQ ID NO:7.
(75) As will be recognized, a “hole-bearing” CH2-CH3 Domain (e.g., SEQ ID NO:8) could be employed in the first polypeptide chain, in which case, a “knob-bearing” CH2-CH3 Domain (e.g., SEQ ID NO:7) would be employed in the third polypeptide chain.
(76) Thus, in sum, a preferred first polypeptide chain of a preferred Tri-Specific Binding Molecule of the present invention will comprise the Domains and linkers: (VL.sub.I Domain)-(Linker 1)-(VH.sub.II Domain)-(Cysteine-Containing Domain (Linker 2))-(E-coil Heterodimer-Promoting Domain)-(Linker 3)-(Knob-Bearing CH2-CH3 Domain) or (VL.sub.I Domain)-(Linker 1)-(VH.sub.II Domain)-(Linker 2)-(Cysteine-Containing E-coil Heterodimer-Promoting Domain)-(Linker 3)-(Knob-Bearing CH2-CH3 Domain or (VL.sub.I Domain)-(Linker 1)-(VH.sub.II Domain)-(Linker 2)-(Cysteine-Containing E-coil Heterodimer-Promoting Domain)-(Linker 3)-(Knob-Bearing CH2-CH3 Domain).
(77) 2. Preferred Second Polypeptide Chain
(78) A second polypeptide chain of such preferred Tri-Specific Binding Molecules will comprise, in the N-terminal to C-terminal direction, a Variable Light Chain Domain capable of binding to Epitope II (VL.sub.II), a Variable Heavy Chain Domain capable of binding to Epitope I (VH.sub.I), a cysteine residue or Cysteine-Containing Domain and a Heterodimer-Promoting Domain.
(79) Since the Variable Light Chain and Variable Heavy Chain Domains of the second polypeptide are directed toward different epitopes, they cannot associate together to form a Binding Domain that is able to bind either Epitope I or Epitope II. The Variable Light Chain and Variable Heavy Chain Domains of the second polypeptide are spaced apart from one another by an intervening linker peptide that is sufficiently short as to substantially prevent the association of these Domains. “Linker 1,” having the sequence (SEQ ID NO:1): GGGSGGGG is an exemplary linker for this purpose.
(80) As in the case of the first polypeptide chain, the Variable Heavy Chain Domain of the second polypeptide and the Heterodimer-Promoting Domain of that polypeptide are preferably spaced apart from one another by an intervening Cysteine-Containing Domain that contains 1, 2, 3 or more cysteine residues. “Linker 2,” having the sequence (SEQ ID NO:2) GGCGGG is an exemplary linker for this purpose. Such cysteine residues can form disulfide bonds with cysteine residues in the cysteine-containing spacer peptide that separates the Variable Heavy Chain Domain of the first polypeptide and the Heterodimer-Promoting Domain of that polypeptide. Thus, the first and second polypeptides of the Tri-Specific Binding Molecules of the present invention are covalently bonded to one another. Alternatively, a Cysteine-Containing Heterodimer-Promoting Domain, as described above, may be used.
(81) As discussed above, the Heterodimer-Promoting Domain of the second polypeptide chain is selected so as coordinate with the Heterodimer-Promoting Domain of the first polypeptide chain. Thus, in a preferred embodiment, the Heterodimer-Promoting Domain of the first polypeptide chain is either a “K-coil” Domain (e.g., SEQ ID NO:4 or SEQ ID NO:116) or an “E-coil” Domain (e.g., SEQ ID NO:3 or SEQ ID NO:115). Since the first polypeptide chain will preferably possess an “E-coil” Domain, the second polypeptide chain will preferably contain a “K-coil” Domain.
(82) As the first and second polypeptide chains are polypeptide chains of a diabody, they are able to associate together to form a Domain I Binding Domain (VL.sub.A/VH.sub.A) that recognizes and immunospecifically binds to Epitope I, and a Domain II Binding Domain (VL.sub.B/VH.sub.B) that recognizes and immunospecifically binds to Epitope II.
(83) Thus, in sum, a preferred second polypeptide chain of a preferred Tri-Specific Binding Molecule of the present invention will comprise the Domains and linkers: (VL.sub.1 Domain)-(Linker 1)-(VH.sub.I Domain)-(Cysteine-Containing Domain (Linker 2))-(K-coil Heterodimer-Promoting Domain) or (VL.sub.II Domain)-(Linker 1)-(VH.sub.I Domain)-(Linker 2)-(Cysteine-Containing K-coil Heterodimer-Promoting Domain).
(84) 3. Preferred Third Polypeptide Chain
(85) A third polypeptide chain of a preferred Tri-Specific Binding Molecule of the present invention is a polypeptide that comprises, in the N-terminal to C-terminal direction, a Binding Domain, a Cysteine-Containing Domain that may optionally comprise a CH1-Hinge Domain, and a CH2-CH3 Domain. The Binding Domain of the third polypeptide chain of a preferred Tri-Specific Binding Molecule of the present invention may be a Variable Heavy Chain Domain capable of binding to Epitope III (VH.sub.III), in which case, the fourth polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention (discussed below) is a polypeptide that comprises a Variable Light Chain Domain capable of binding to Epitope III (VL.sub.III), such that the Binding Domain is capable of immunospecific binding to an antigen possessing Epitope III. Alternatively, the Binding Domain of the third polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention may comprise a T Cell Receptor-Type Binding Domain, in which case, the fourth polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention (discussed below) is a polypeptide that comprises a complementary T Cell Receptor-Type Binding Domain, such that the interaction of two polypeptide chains forms a Binding Domain that is capable of physiospecific binding to an antigen molecule displayed in the MHC complex arrayed on the surface of a Cell. The third polypeptide chain may be isolated from naturally occurring antibodies. Alternatively, it may be constructed recombinantly. An exemplary CH1 Domain is a human IgG1 CH1 Domain having the amino acid sequence (SEQ ID NO:9):
(86) TABLE-US-00005 ASTKGPSVFP LAPSSKSTSG GTAALGCLVK DYFPEPVTVS WNSGALTSGV HTFPAVLQSS GLYSLSSVVT VPSSSLGTQT YICNVNHKPS NTKVDKKV
(87) An exemplary Hinge Domain is a human IgG1 Hinge Domain having the amino acid sequence (SEQ ID NO:10): EPKSCDKTHTCPPCP. As will be recognized, the exemplary Hinge Domain comprises multiple cysteine residues (Elkabetz et al. (2005) “Cysteines In CH1 Underlie Retention Of Unassembled Ig Heavy Chains,” J. Biol. Chem. 280:14402-14412) that may participate in interchain covalent bonding. Alternatively, a different Cysteine-Containing Domain may be employed (e.g., a peptide having the amino acid sequence: VEPKSC (SEQ ID NO:12), AEPKSC (SEQ ID NO:127), GVEPKSC (SEQ ID NO:133) or GGCGGG (SEQ ID NO:2)).
(88) Although a wild-type CH2-CH3 Domain may be employed, it is preferred, as described above, to employ a modified CH2-CH3 Domain that promotes heterodimerization with the CH2-CH3 Domain of the first polypeptide chain.
(89) Preferably, therefore the CH2-CH3 Domain of the third polypeptide chain will be a “hole-bearing” CH2-CH3 Domain whose amino acid sequence is complementary to the “knob-bearing” CH2-CH3 Domain (SEQ ID NO:7) employed in the first polypeptide. As discussed above, the hole-bearing CH2-CH3 Domain preferably should comprise a substitution at position 435 (H435R) to remove the Protein A binding site. An exemplary “hole-bearing” CH2-CH3 Domain with the H435R substitution for the third polypeptide is SEQ ID NO:8.
(90) As will be recognized, a “knob-bearing” CH2-CH3 Domain (e.g., SEQ ID NO:7) could be employed in the third polypeptide chain, in which case, a “hole-bearing” CH2-CH3 Domain (e.g., SEQ ID NO:8) would be employed in the first polypeptide chain.
(91) In the embodiment in which the third (and fourth) polypeptide chains of the preferred Tri-Specific Binding Molecules of the present invention each comprise a polypeptide chain of a T cell Receptor-Type Binding Domain, which recognized antigen displayed on a cell surface in the context of class I MHC. Methods are well-known in the art to produce such T cell receptor-type binding domains (e.g., US2012/0294874A1).
(92) Thus, in sum, a third polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention will comprise the Domains and linkers: (VH.sub.III Domain)-(Cysteine-Containing Domain (optionally a CH1 Domain and/or a Hinge Domain)-(Hole-Bearing CH2-CH3 Domain), or (Receptor-Type Binding Domain; first or second polypeptide thereof)-(Cysteine-Containing Domain (optionally a CH1 Domain and/or a Hinge Domain)-(Hole-Bearing CH2-CH3 Domain).
(93) 4. Preferred Fourth Polypeptide Chain
(94) A fourth polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention is either a polypeptide of a Receptor-Type Binding Domain (wherein the third and fourth polypeptide chains form a Receptor-Type Binding Domain), or more preferably, a polypeptide portion of a Light Chain of the above-indicated antibody that immunospecifically binds to Epitope III and/or which is complementary to the Binding Domain of the third polypeptide chain.
(95) Thus, wherein the third and fourth polypeptides form a Fab-Type Binding Domain such fourth polypeptide chain comprises, in the N-terminal to C-terminal direction, a Variable Light Chain Domain capable of binding to Epitope III (VL.sub.III), and a Cysteine-Containing Domain for promoting covalent bonding to the third polypeptide chain, or a Binding Domain and such Cysteine-Containing Domain for promoting covalent bonding to the third polypeptide chain. Such Cysteine-Containing Domain may be a CL Domain, or a cysteine-containing portion thereof, such as (SEQ ID NO:11) FNRGEC or (SEQ ID NO:128) GFNRGEC or a linker such as Linker 2 (having the sequence (SEQ ID NO:2) GGCGGG. An exemplary a Cysteine-Containing Domain that forms disulfide bonds with such Linker 2 comprises the amino acid sequence VEPKSC (SEQ ID NO:12) or a Hinge Domain.
(96) The fourth polypeptide chain may be isolated from naturally occurring antibodies. Alternatively, it may be constructed recombinantly. An preferred CL Domain is a human IgG1 CL Kappa Domain having the amino acid sequence (SEQ ID NO:13):
(97) TABLE-US-00006 RTVAAPSVFI FPPSDEQLKS GTASVVCLLN NFYPREAKVQ WKVDNALQSG NSQESVTEQD SKDSTYSLSS TLTLSKADYE KHKVYACEVT HQGLSSPVTK SFNRGEC
(98) Alternatively, an exemplary CL Domain is a human IgG1 CL Lambda2 Domain having the amino acid sequence (SEQ ID NO:14):
(99) TABLE-US-00007 QPKAAPSVTL FPPSSEELQA NKATLVCLIS DFYPGAVTVA WKADSSPVKA GVETTPSKQS NNKYAASSYL SLTPEQWKSH RSYSCQVTHE GSTVEKTVAP TECS
(100) As will be noticed, the CL Domain, or other Cysteine-Containing Domain, of the fourth polypeptide chain comprises a cysteine residue that is able to covalently bond to a cysteine residue of the Cysteine-Containing Domain of the third polypeptide chain (e.g., a CH1 Domain) to thereby covalently complex the third and fourth polypeptide chains of the Tri-Specific Binding Molecules of the present invention to one another. Thus the third and fourth polypeptide chains are covalently bonded to one another.
(101) Additionally, cysteine residues of the CH2-CH3 Domain of the first polypeptide chain can form disulfide bonds with cysteine residues of the CH2-CH3 Domain of the third polypeptide chain. Thus the first and third polypeptide chains are covalently bonded to one another.
(102) Thus, in sum, a fourth polypeptide chain of the preferred Tri-Specific Binding Molecules of the present invention will comprise the Domains and linkers: (VL.sub.III Domain)-(Cysteine-Containing Domain (optionally a CL Domain), or (Receptor-Type Binding Domain; first or second polypeptide thereof)-(Cysteine-Containing Domain (optionally a CL Domain).
(103) C. Alternative First Polypeptide Chain
(104) In one embodiment, the orientations of the above-described Domains will be in the N-terminal to C-terminal direction. The present invention, however, also contemplates a variation thereof, wherein the orientations of the Domains of the first polypeptide chain are: NH.sub.2-(Knob-Bearing CH3-CH2 Domain)-(VL.sub.I Domain)-(Linker 1)-(VH.sub.II Domain)-(Cysteine-Containing Domain Linker 2)-(E-coil Heterodimer-Promoting Domain). Preferably, a Cysteine-Containing Domain is present, N-terminal to such CH2-CH3 Domain. The sequence of an exemplary peptide is (SEQ ID NO:5): DKTHTCPPCP, however, alternative linkers may be employed, e.g., EPKSCDKTHTCPPCP (SEQ ID NO:129) or LEPKSSDKTHTCPPCP; SEQ ID NO:130). Preferably in this embodiment, the CH3 Domain is spaced apart from the VL.sub.I Domain by an intervening peptide linker, such as one having the amino acid sequence of (SEQ ID NO:15): APSSS, and more preferably, the amino acid sequence (SEQ ID NO:16) APSSSPME, however, alternative linkers may be employed, e.g., ASTKG (SEQ ID NO:131), LEPKSS (SEQ ID NO:132), GGC or GGG.
(105) D. Albumin-Binding Domain
(106) As disclosed in WO 2012/018687, in order to improve the in vivo pharmacokinetic properties of diabodies, a diabody may be modified to contain a polypeptide portion of a serum-binding protein at one or more of the termini of the diabody. Such considerations are also applicable to the Tri-Specific Binding Molecules of the present invention. Most preferably, when a polypeptide portion of a serum-binding protein is desired to be incorporated into the Tri-Specific Binding Molecules of the present invention, such polypeptide portion will be installed at the C-terminus of one of the polypeptide chains of the Tri-Specific Binding Molecule.
(107) Albumin is the most abundant protein in plasma and has a half-life of 19 days in humans. Albumin possesses several small molecule binding sites that permit it to non-covalently bind to other proteins and thereby extend their serum half-lives. The Albumin-Binding Domain 3 (ABD3) of protein G of Streptococcus strain G148 consists of 46 amino acid residues forming a stable three-helix bundle and has broad albumin-binding specificity (Johansson, M. U. et al. (2002) “Structure, Specificity, And Mode Of Interaction For Bacterial Albumin-Binding Modules,” J. Biol. Chem. 277(10):8114-8120. Thus, a particularly preferred polypeptide portion of a serum-binding protein for improving the in vivo pharmacokinetic properties of a diabody is the Albumin-Binding Domain (ABD) from streptococcal protein G, and more preferably, the Albumin-Binding Domain 3 (ABD3) of protein G of Streptococcus strain G148 (SEQ ID NO:123): LAEAKVLANR ELDKYGVSDY YKNLIDNAKS AEGVKALIDE ILAALP.
(108) As disclosed in WO 2012/162068 (herein incorporated by reference), “deimmunized” variants of SEQ ID NO:123 have the ability to attenuate or eliminate MHC class II binding. Based on combinational mutation results, the following combinations of substitutions are considered to be preferred substitutions for forming such a deimmunized Albumin-Binding Domain: 66S/70S+71A; 66S/70S+79A; 64A/65A/71A+66S; 64A/65A/71A+66D; 64A/65A/71A+66E; 64A/65A/79A+66S; 64A/65A/79A+66D; 64A/65A/79A+66E. Variant ABDs having the modifications L64A, 165A and D79A or the modifications N66S, T70S and D79A. Variant deimmunized ABD having the amino acid sequence:
(109) TABLE-US-00008 (SEQ ID NO: 124) LAEAKVLANR ELDKYGVSDY YKNA.sub.64A.sub.65NNAKT VEGVKALIA.sub.79E ILAALP,
or the amino acid sequence:
(110) TABLE-US-00009 (SEQ ID NO: 125) LAEAKVLANR ELDKYGVSDY YKNLIS.sub.66NAKS.sub.70 VEGVKALIA.sub.79E ILAALP,
are particularly preferred as such deimmunized Albumin-Binding Domains exhibit substantially wild-type binding while providing attenuated MHC class II binding. Although such Albumin-Binding Domains may be incorporated into any of the polypeptide chains of the Tri-Specific Binding Molecules of the present invention, it is preferred to position such Domain C-terminally to the E-coil (or K-coil) Domain of the first or third polypeptide chain (via a linker that intervenes between the E-coil (or K-coil) Domain and the Albumin-Binding Domain (which is preferably a deimmunized Albumin-Binding Domain)). A preferred sequence for such a linker is SEQ ID NO:126: GGGS.
(111) E. Functionality of the Fc Domain
(112) In one embodiment, the CH2-CH3 Domain of the first polypeptide chain and the CH2-CH3 Domain of the third polypeptide will complex to form an Fc Domain that is substantially incapable of binding to an Fc receptor (i.e., binding at less than 10% the extent of a wild-type Fc Domain. Alternatively, the Fc Domain of such molecules will be capable of binding to the Fc receptor under physiological conditions, so that such Tri-Specific Binding Molecules will be tetra-specific, capable of mediating coordinated binding to four molecules (Epitope I, Epitope II and Epitope III, and an Fc receptor). Most preferably, such molecules capable of binding to the Fc receptor will additionally mediate Fc receptor-dependent effector function.
(113) The invention also encompasses molecules comprising variant Fc Domains comprising one or more amino acid substitutions, insertions, or deletions relative to a comparable wild-type Fc Domain. Molecules comprising variant Fc Domains normally have altered phenotypes relative to molecules comprising wild-type Fc Domains The variant phenotype may be expressed as altered serum half-life, altered stability, altered susceptibility to cellular enzymes or altered effector function as assayed in an NK dependent or macrophage dependent assay. Fc Domain modifications identified as altering effector function are known in the art, including modifications that increase binding to activating receptors (e.g., FcγRIIA (CD16A) and reduce binding to inhibitory receptors (e.g., FcγRIIB (CD32B) (see, e.g., Stavenhagen, J. B. et al. (2007) “Fc Optimization Of Therapeutic Antibodies Enhances Their Ability To Kill Tumor Cells In Vitro And Controls Tumor Expansion In Vivo Via Low-Affinity Activating Fcgamma Receptors,” Cancer Res. 57(18):8882-8890). Exemplary variants of human IgG1 Fc Domains with reduced binding to CD32B and/or increased binding to CD16A contain F243L, R292P, Y300L, V305I or P296L substitutions. These amino acid substitutions may be present in a human IgG1 Fc Domain in any combination. In one embodiment, the human IgG1 Fc Domain variant contains a F243L, R292P and Y300L substitution. In another embodiment, the human IgG1 Fc Domain variant contains a F243L, R292P, Y300L, V305I and P296L substitution. In another embodiment, the human IgG1 Fc Domain variant contains an N297Q substitution, L234A and L235A substitutions or a D265A substitution, as these mutations abolish FcR binding.
(114) III. Exemplification of the Tri-Specific Binding Molecules of the Present Invention: Tri-Specific Binding Molecules Having Binding Domains that Bind to Epitopes of CD3 and CD8 and to an Epitope of a Disease-Antigen
(115) As stated above, the present invention particularly relates to the embodiment of Tri-Specific Binding Molecules in which the three epitopes are selected such that one or two of such epitopes are epitope(s) of an immune system cell, and especially, a cytotoxic lymphocyte immune system cell (CTL), and in which the remaining epitope(s) are epitope(s) of a Disease-Associated Antigen. In a particularly preferred embodiment of such Tri-Specific Binding Molecule, the Binding Domains of such molecule are selected such that Epitope I, Epitope II or Epitope III is an epitope of CD3, a second of Epitope I, Epitope II or Epitope III is an epitope of CD8, and the third of Epitope I, Epitope II or Epitope III is an epitope of a Disease-Associated Antigen, wherein the Binding Domains I, II and III of such Tri-Specific Binding Molecules mediate coordinated binding of a cytotoxic T cell and a cell expressing the Disease-Associated Antigen. Such Tri-Specific Binding Molecules are capable of localizing a cytotoxic lymphocyte cell to a cell that expresses a Disease-Associated Antigen, and of thereby facilitate the killing of cells that express the Disease-Associated Antigen. The Disease-Associated Antigen may be a cancer antigen, or may be an antigen that is characteristic of a pathogen (e.g., bacterial, fungal, viral or protozoan) infection. More particularly, the invention relates to such Tri-Specific Binding Molecules that are capable of mediating coordinated binding to: (1) an epitope of CD3, (2) an epitope of CD8, and (3) an epitope of a Disease-Associated Antigen. By binding to CD3 and CD8, and to the Disease-Associated Antigen, such molecules co-localize cytotoxic T cells to cells presenting the Disease-Associated Antigen, leading to the activation of such T cells and the initiation of a cytotoxic response against cells expressing the Disease-Associated Antigen.
(116) The heavy chains of an anti-CD3 or anti-CD8 antibody may be employed as the third polypeptide chain of such exemplary Tri-Specific Binding Molecules of the present invention. Likewise, the light chains of such antibodies may be employed as the fourth polypeptide chain of the Tri-Specific Binding Molecules of the present invention. Alternatively, the Light Chain Variable Domains and/or the Heavy Chain Variable Domains of such antibodies may be combined with other immunoglobulin constant regions to achieve such third and fourth polypeptide chains. Thus, such antibodies may be used to produce Tri-Specific Binding Molecules of the present invention whose Site C is capable of binding CD3 or CD8.
(117) Similarly, such Variable Domains can be incorporated into the Variable Domain portions of the first and third polypeptide of the Tri-Specific Binding Molecules of the present invention so as to produce Tri-Specific Binding Molecules of the present invention whose Site A is capable of binding CD3 or CD8, or whose Site B is capable of binding CD3 or CD8.
(118) 1. Exemplary Anti-CD3 Antibodies
(119) Any of the exemplary anti-CD3 or anti-CD8 antibodies provided below may be employed to make the CD3 or CD8 Binding Domains of the Tri-Specific Binding Molecules of the present invention.
(120) OKT3
(121) OKT3 Light Chain Variable Domain (SEQ ID NO:17) (CDRs shown underlined):
(122) TABLE-US-00010 QIVLTQSPAI MSASPGEKVT MTCSASSSVS YMNWYQQKSG TSPKRWIYDT SKLASGVPAH FRGSGSGTSY SLTISGMEAE DAATYYCQQW SSNPFTFGSG TKLEINR
(123) OKT3 Heavy Chain Variable Domain (SEQ ID NO:18) (CDRs shown underlined):
(124) TABLE-US-00011 QVQLQQSGAE LARPGASVKM SCKASGYTFT RYTMHWVKQR PGQGLEWIGY INPSRGYTNY NQKFKDKATL TTDKSSSTAY MQLSSLTSED SAVYYCARYY DDHYCLDYWG QGTTLTVSSA KTTAPSVYPL APVCGDTTGS SVTLGCLVKG YFPEPVTLTW NSGSLSSGVH TFPAVLQSDL YTLSSSVTVT SS M291
(125) M291 Light Chain Variable Domain (SEQ ID NO:19) (CDRs shown underlined):
(126) TABLE-US-00012 DIVLTQSPAI MSASPGEKVT MTCSASSSVS YMNWYQQKSG TSPKRWTYDT SKLASGVPAR FSGSGSGTSY SLTISSMEAE DADTYYCQQW SSNPPTFGSG TKLEIK
(127) M291 Heavy Chain Variable Domain (SEQ ID NO:20) (CDRs shown underlined):
(128) TABLE-US-00013 QVQLQQSGAE LARPGASVKM SCKASGYTFI SYTMHWVKQR PGQGLEWIGY INPRSGYTHY NQKLKDKATL TADKSSSSAY MQLSSLTSED SAVYYCARSA YYDYDGFAYW GQGTLVTVSA YTH12.5
(129) YTH12.5 Light Chain Variable Domain (SEQ ID NO:21) (CDRs shown underlined):
(130) TABLE-US-00014 MGWSCIILFL VATATGVHSD IQLTQPNSVS TSLGSTVKLS CTLSSGNIEN NYVHWYQLYE GRSPTTMIYD DDKRPDGVPD RFSGSIDRSS NSAFLTIHNV AIEDEAIYFC HSYVSSFNVF GGGTKLTVLR
(131) YTH12.5 Heavy Chain Variable Domain (SEQ ID NO:22) (CDRs shown underlined):
(132) TABLE-US-00015 MGWSCIILFL VATATGVHSE VQLLESGGGL VQPGGSLRLS CAASGFTFSS FPMAWVRQAP GKGLEWVSTI STSGGRTYYR DSVKGRFTIS RDNSKNTLYL QMNSLRAEDT AVYYCAKFRQ YSGGFDYWGQ GTLVTVSS
(133) Humanized Anti-CD3 Antibody 1 (“CD3 mAb 1”) (US2014/0099318A1)
(134) CD3 mAb 1 Light Chain Variable Domain (SEQ ID NO:23) Variant 1 (CDRs shown underlined):
(135) TABLE-US-00016 DIQMTQSPSS LSASVGDRVT ITCSASSSVS YMNWYQQKPG KAPKRLIYDS SKLASGVPSR FSGSGSGTEF TLTISSLQPE DFATYYCQQW SRNPPTFGGG TKVEIK
(136) CD3 mAb 1 Light Chain Variable Domain (SEQ ID NO:24) Variant 2 (CDRs shown underlined):
(137) TABLE-US-00017 DVVMTQSPAI MSAFPGEKVT ITCSASSSVS YMNWYQQKPG KAPKRWIYDS SKLASGVPSR FSGSGSGTEF TLTISSLQPE DFATYYCQQW SRNPPTFGGG TKVEIK
(138) CD3 mAb 1 Heavy Chain Variable Domain (SEQ ID NO:25) Variant 1 (CDRs shown underlined):
(139) TABLE-US-00018 QVQLVQSGAE VKKPGASVKV SCKASGYTFT RSTMHWVRQA PGQGLEWIGY INPSSAYTNY NQKFKDRVTI TADKSTSTAY MELSSLRSED TAVYYCASPQ VHYDYNGFPY WGQGTLVTVS S
(140) Humanized Anti-CD3 Antibody 2 (“CD3 mAb 2”) (US2014/0099318A1)
(141) CD3 mAb 2 Light Chain Variable Domain (SEQ ID NO:26) (CDRs shown underlined):
(142) TABLE-US-00019 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG
(143) CD3 mAb 2 Heavy Chain Variable Domain (SEQ ID NO:27) (CDRs shown underlined):
(144) TABLE-US-00020 EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKDRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVS WFAYWGQGTL VTVSS
(145) CD3 mAb 2 Heavy Chain Variable Domain D65G Variant (SEQ ID NO:28) (CDRs shown underlined):
(146) TABLE-US-00021 EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGRIRSKYNNYAT YYADSVKGRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVS WFAYWGQGTL VTVSS
(147) 2. Exemplary Anti-CD8 Antibodies
(148) OKT8 (“CD8 mAb 1”)
(149) OKT8 Light Chain Variable Domain (SEQ ID NO:29) (CDRs shown underlined):
(150) TABLE-US-00022 DIVMTQSPAS LAVSLGQRAT ISCRASESVD SYDNSLMHWY QQKPGQPPKV LIYLASNLES GVPARFSGSG SRTDFTLTID PVEADDAATY YCQQNNEDPY TFGGGTKLEI KR
(151) OKT8 Heavy Chain Variable Domain (SEQ ID NO:30) (CDRs shown underlined):
(152) TABLE-US-00023 QVQLLESGPE LLKPGASVKM SCKASGYTFT DYNMHWVKQS HGKSLEWIGY IYPYTGGTGY NQKFKNKATL TVDSSSSTAY MELRSLTSED SAVYYCARNF RYTYWYFDVW GQGTTVTVSS
(153) TRX2 (“CD8 mAb 2”)
(154) TRX2 Light Chain Variable Domain (SEQ ID NO:31) (CDRs shown underlined):
(155) TABLE-US-00024 DIQMTQSPSS LSASVGDRVT ITCKGSQDIN NYLANYQQKP GKAPKLLIYN TDILHTGVPS RFSGSGSGTD FTFTISSLQP EDIATYYCYQ YNNGYTFGQG TKVEIK
(156) TRX2 Heavy Chain Variable Domain (SEQ ID NO:32) (CDRs shown underlined):
(157) TABLE-US-00025 QVQLVESGGG VVQPGRSLRL SCAASGFTFS DFGMNWVRQA PGKGLEWVAL IYYDGSNKFY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCAKPH YDGYYHFFDS WGQGTLVTVS S
(158) 3. Exemplary Binding Domains that Bind to Epitopes of Disease-Associated Antigens
(159) (a) HIV Gp41
(160) An illustrative Disease-Associated Antigen is HIV gp41. An exemplary gp41 antibody is 7B2 (“HIV mAb 1”).
(161) Amino Acid Sequence of 7B2 Light Chain Variable Domain (SEQ ID NO:35):
(162) TABLE-US-00026 DIVMTQSPDS LAVSPGERAT IHCKSSQTLL YSSNNRHSIA WYQQRPGQPP KLLLYWASMR LSGVPDRFSG SGSGTDFTLT INNLQAEDVA IYYCHQYSSH PPTFGHGTRV EIK
(163) Amino Acid Sequence of 7B2 Heavy Chain Variable Domain (SEQ ID NO:36):
(164) TABLE-US-00027 QVQLVQSGGG VFKPGGSLRL SCEASGFTFT EYYMTWVRQA PGKGLEWLAY ISKNGEYSKY SPSSNGRFTI SRDNAKNSVF LQLDRLSADD TAVYYCARAD GLTYFSELLQ YIFDLWGQGA RVTVSS
(165) (b) HIV Gp120
(166) A second illustrative Disease-Associated Antigen is HIV gp120. An exemplary gp120 antibody is A32 (“HIV mAb 2”).
(167) Amino Acid Sequence of A32 VL Light Chain Variable Domain (SEQ ID NO:33):
(168) TABLE-US-00028 QSALTQPPSA SGSPGQSVTI SCTGTSSDVG GYNYVSWYQH HPGKAPKLII SEVNNRPSGV PDRFSGSKSG NTASLTVSGL QAEDEAEYYC SSYTDIHNFV FGGGTKLTVL
(169) Amino Acid Sequence of A32 VH Heavy Chain Variable Domain (SEQ ID NO:34):
(170) TABLE-US-00029 QVQLQESGPG LVKPSQTLSL SCTVSGGSSS SGAHYWSWIR QYPGKGLEWI GYIHYSGNTY YNPSLKSRIT ISQHTSENQF SLKLNSVTVA DTAVYYCARG TRLRTLRNAF DIWGQGTMVT VSS
(171) (c) RSV Glycoprotein F
(172) A further illustrative Disease-Associated Antigen is RSV glycoprotein F. An exemplary anti-RSV glycoprotein F antibody is palivizumab (“RSV mAb 1”).
(173) Amino Acid Sequence of Palivizumab Light Chain Variable Domain (SEQ ID NO:37):
(174) TABLE-US-00030 DIQMTQSPST LSASVGDRVT ITCRASQSVG YMHWYQQKPG KAPKLLIYDT SKLASGVPSR FSGSGSGTEF TLTISSLQPD DFATYYCFQG SGYPFTFGGG TKLEIK
(175) Amino Acid Sequence of palivizumab Heavy Chain Variable Domain (SEQ ID NO:38):
(176) TABLE-US-00031 QVTLRESGPA LVKPTQTLTL TCTFSGFSLS TSGMSVGWIR QPPGKALEWL ADIWWDDKKD YNPSLKSRLT ISKDTSKNQV VLKVTNMDPA DTATYYCARS MITNWYFDVW GAGTTVTVSS
(177) (d) B7-H3
(178) A particularly preferred illustrative Disease-Associated Antigen is B7-H3, which is expressed on a variety of cancer cells (e.g., neuroblastomas, gastric, ovarian and non-small cell lung cancers, etc.). B7-H3 protein expression has been immunohistologically detected in tumor cell lines (Chapoval, A. et al. (2001) “B7-H3: A Costimulatory Molecule For T Cell Activation and IFN-γ Production,” Nature Immunol. 2:269-274; Saatian, B. et al. (2004) “Expression Of Genes For B7-H3 And Other T Cell Ligands By Nasal Epithelial Cells During Differentiation And Activation,” Amer. J. Physiol. Lung Cell. Mol. Physiol. 287:L217-L225; Castriconi et al. (2004) “Identification Of 4Ig-B7-H3 As A Neuroblastoma-Associated Molecule That Exerts A Protective Role From An NK Cell-Mediated Lysis,” Proc. Natl. Acad. Sci. (U.S.A.) 101(34): 12640-12645); Sun, M. et al. (2002) “Characterization of Mouse and Human B7-H3 Genes,” J. Immunol. 168:6294-6297). mRNA expression has been found in heart, kidney, testes, lung, liver, pancreas, prostate, colon, and osteoblast cells (Collins, M. et al. (2005) “The B7 Family Of Immune-Regulatory Ligands,” Genome Biol. 6:223.1-223.7). At the protein level, B7-H3 is found in human liver, lung, bladder, testis, prostate, breast, placenta, and lymphoid organs (Hofmeyer, K. et al. (2008) “The Contrasting Role Of B7-H3,” Proc. Natl. Acad. Sci. (U.S.A.) 105(30):10277-10278). Illustrative antibodies that bind to B7-H3 include humanized “BRCA84D,” “BRCA69D” and “PRCA157” (WO 2011/109400). Exemplary light and heavy variable chains have the following sequences (CDRs shown underlined):
(179) Amino Acid Sequence of exemplary humanized BRCA84D-5VL Light Chain Variable Domain (SEQ ID NO:39):
(180) TABLE-US-00032 DIQLTQSPSF LSASVGDRVT ITCKASQNVD TNVAWYQQKP GQAPKALIYS ASYRYSGVPS RFSGSGSGTD FTLTISSLQP EDFATYYCQQ YNNYPFTFGQ GTKLEIK
(181) Amino Acid Sequence of exemplary humanized BRCA84D-2VH Heavy Chain Variable Domain (SEQ ID NO:40):
(182) TABLE-US-00033 EVQLVESGGG LVQPGGSLRL SCAASGFTFS SFGMHWVRQA PGKGLEWVAY ISSDSSAIYY ADTVKGRFTI SRDNAKNSLY LQMNSLRDED TAVYYCGRGR ENIYYGSRLD YWGQGTTVTV SS
(183) Amino Acid Sequence of exemplary BRCA69D (“B7-H3 mAb 1”) Light Chain Variable Domain (SEQ ID NO:41):
(184) TABLE-US-00034 DIQMTQSPSS LSASVGDRVT ITCRASQDIS NYLNWYQQKP GKAPKLLIYY TSRLHSGVPS RFSGSGSGTD FTLTISSLQP EDIATYYCQQ GNTLPPTFGG GTKLEIK
(185) Amino Acid Sequence of exemplary BRCA69D (“B7-H3 mAb 1”) Heavy Chain Variable Domain (SEQ ID NO:42):
(186) TABLE-US-00035 QVQLVQSGAE VKKPGASVKV SCKASGYTFT SYWMQWVRQA PGQGLEWMGT IYPGDGDTRY TQKFKGRVTI TADKSTSTAY MELSSLRSED TAVYYCARRG IPRLWYFDVW GQGTTVTVSS
(187) Amino Acid Sequence of exemplary PRCA157 Light Chain Variable Domain (SEQ ID NO:43):
(188) TABLE-US-00036 DIQMTQSPAS LSVSVGETVT ITCRASESIY SYLAWYQQKQ GKSPQLLVYN TKTLPEGVPS RFSGSGSGTQ FSLKINSLQP EDFGRYYCQH HYGTPPWTFG GGTNLEIK
(189) Amino Acid Sequence of exemplary PRCA157 Heavy Chain Variable Domain (SEQ ID NO:44):
(190) TABLE-US-00037 EVQQVESGGD LVKPGGSLKL SCAASGFTFS SYGMSWVRQT PDKRLEWVAT INSGGSNTYY PDSLKGRFTI SRDNAKNTLY LQMRSLKSED TAMYYCARHD GGAMDYWGQG TSVTVSS
(191) (e) A33 Tumor Antigen
(192) The A33 tumor antigen is another illustrative Disease-Associated Antigen. The amino acid sequence of the Light Chain Variable Domain of an exemplary humanized anti-A33 antibody (“gpA33 mAb 1”) is (SEQ ID NO:45):
(193) TABLE-US-00038 QIVLTQSPAI MSASPGERVT MTCSARSSIS FMYWYQQKPG SSPRLLIYDT SNLASGVPVR FSGSGSGTSY SLTISRMEAE DAATYYCQQW SSYPLTFGSG TKLELKR
(194) The amino acid sequence of the Heavy Chain Variable Domain of such exemplary humanized anti-A33 (gpA33 mAb 1) antibody is (SEQ ID NO:46):
(195) TABLE-US-00039 QVQLQQSGPE LVKPGASVKI SCKASGYTFS GSWMNWVKQR PGQGLEWIGR IYPGDGETNY NGKEKDKATL TADKSSTTAY MELSSLTSVD SAVYFCARIY GNNVYFDVWG AGTTVTVSS
(196) (f) 5T4 Tumor Antigen
(197) The 5T4 tumor antigen is another illustrative Disease-Associated Antigen. The amino acid sequence of the Light Chain Variable Domain of an exemplary humanized anti-5T4 mAb 1 antibody (“5T4 mAb 1”) is (SEQ ID NO:47):
(198) TABLE-US-00040 DIQMTQSPSS LSASVGDRVT ITCRASQGIS NYLAWFQQKP GKAPKSLIYR ANRLQSGVPS RFSGSGSGTD FTLTISSLQP EDVATYYCLQ YDDFPWTFGQ GTKLEIK
(199) The amino acid sequence of the Heavy Chain Variable Domain of such exemplary humanized 5T4 mAb 1 is (SEQ ID NO:48):
(200) TABLE-US-00041 QVQLVQSGAE VKKPGASVKV SCKASGYTFT SFWMHWVRQA PGQGLEWMGR IDPNRGGTEY NEKAKSRVTM TADKSTSTAY MELSSLRSED TAVYYCAGGN PYYPMDYWGQ GTTVTVSS
(201) The amino acid sequence of the Light Chain Variable Domain of a second exemplary humanized 5T4 mAb 2 antibody (“5T4 mAb 2”) is (SEQ ID NO:49):
(202) TABLE-US-00042 DVLMTQTPLS LPVSLGDQAS ISCRSSQSIV YSNGNTYLEW YLQKPGQSPK LLIYKVSNRF SGVPDRFSGS GSGTDFTLKI SRVEAEDLGV YYCFQGSHVP FTFGSGTKLE IK
(203) The amino acid sequence of the Heavy Chain Variable Domain of such second exemplary humanized 5T4 mAb 2 is (SEQ ID NO:50):
(204) TABLE-US-00043 QVQLQQPGAE LVKPGASVKM SCKASGYTFT SYWITWVKQR PGQGLEWIGD IYPGSGRANY NEKFKSKATL TVDTSSSTAY MQLSSLTSED SAVYNCARYG PLFTTVVDPN SYAMDYWGQG TSVTVSS
(205) (g) ROR1 Antigen
(206) The ROR1 tumor antigen is another illustrative Disease-Associated Antigen. Exemplary anti-ROR1 antibodies include antibody 2A2 (WO 2010/124188), R11 (WO 2012/075158) and R12 (WO 2012/075158).
(207) The amino acid sequence of the Light Chain Variable Domain of the 2A2 antibody is (SEQ ID NO:53):
(208) TABLE-US-00044 DIVMTQSQKI MSTTVGDRVS ITCKASQNVD AAVAWYQQKP GQSPKLLIYS ASNRYTGVPD RFTGSGSGTD FTLTISNMQS EDLADYFCQQ YDIYPYTFGG GTKLEIK
(209) The amino acid sequence of the Heavy Chain Variable Domain of the 2A2 antibody is (SEQ ID NO:54):
(210) TABLE-US-00045 QVQLQQSGAE LVRPGASVTL SCKASGYTFS DYEMHWVIQT PVHGLEWIGA IDPETGGTAY NQKFKGKAIL TADKSSSTAY MELRSLTSED SAVYYCTGYY DYDSFTYWGQ GTLVTVSA
(211) The amino acid sequence of the Light Chain Variable Domain of the R11 antibody is (SEQ ID NO:55):
(212) TABLE-US-00046 ELVMTQTPSS TSGAVGGTVT INCQASQSID SNLAWFQQKP GQPPTLLIYR ASNLASGVPS RFSGSRSGTE YTLTISGVQR EDAATYYCLG GVGNVSYRTS FGGGTEVVVK
(213) The amino acid sequence of the Heavy Chain Variable Domain of the R11 antibody is (SEQ ID NO:56):
(214) TABLE-US-00047 QSVKESEGDL VTPAGNLTLT CTASGSDIND YPISWVRQAP GKGLEWIGFI NSGGSTWYAS WVKGRFTISR TSTTVDLKMT SLTTDDTATY FCARGYSTYY GDFNIWGPGT LVTISS
(215) The amino acid sequence of the Light Chain Variable Domain of the R12 antibody is (SEQ ID NO:57):
(216) TABLE-US-00048 ELVLTQSPSV SAALGSPAKI TCTLSSAHKT DTIDWYQQLQ GEAPRYLMQV QSDGSYTKRP GVPDRFSGSS SGADRYLIIP SVQADDEADY YCGADYIGGY VFGGGTQLTV TG
(217) The amino acid sequence of the Heavy Chain Variable Domain of the R12 antibody is (SEQ ID NO:58)
(218) TABLE-US-00049 QEQLVESGGR LVTPGGSLTL SCKASGFDFS AYYMSWVRQA PGKGLEWIAT IYPSSGKTYY ATWVNGRFTI SSDNAQNTVD LQMNSLTAAD RATYFCARDS YADDGALFNI WGPGTLVTIS S
(219) One aspect of the present invention (discussed in detail below) is the provision of a more preferred humanized anti-ROR1 antibody (“ROR1 mAb 1”). This more preferred ROR1 mAb 1 has a Light Chain Variable Domain having the sequence (SEQ ID NO:51):
(220) TABLE-US-00050 QLVLTQSPSA SASLGSSVKL TCTLSSGHKT DTIDWYQQQP GKAPRYLMRL EGSGSYNKGS GVRDRFGSGS SSGADRYLTI SSLQSEDEAD YYCGTDYPGN YLFGGGTQLT VL
(221) The amino acid sequence of the Heavy Chain Variable Domain of such more preferred humanized ROR1 mAb 1 is (SEQ ID NO:52):
(222) TABLE-US-00051 QEQLVESGGG LVQPGGSLRL SCAASGFTFS DYYMSWVRQA PGKGLEWVAT IYPSSGKTYY ADSVKGRFTI SSDNAKNSLY LQMNSLRAED TAVYYCARDS YADDAALFDI WGQGTTVTVS S
IV. Selection of Binding Site: Site A, Site B and Site C
(223) As indicated above, the preferred Tri-Specific Binding Molecules of the present invention are at least tri-specific, having an “external” Diabody-Type Binding Domain (Site A) that is located furthest from a Binding Domain III, an “internal” Diabody-Type Binding Domain (Site B) that is located nearest to a Binding Domain III, and the Binding Domain III itself (Site C). As used herein, a description of a Tri-Specific Binding Molecule such as “X/Y/Z” indicates that the X Binding Domain is at Site A, the Y Binding Domain is at Site B and the Z Binding Domain is at Site C. For example, the Tri-Specific Binding Molecule designation “B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1” indicates the B7-H3 mAb 1 Variable Domains occupy Site A of the Tri-Specific Binding Molecule, CD3 mAb 2 Variable Domains occupy Site B and CD8 mAb 1 Variable Domains occupy Site C of the Tri-Specific Binding Molecule.
(224) The present invention thus permits choice as to which of such Sites is to be used to bind a particular desired epitope. One factor to guide such selection, particularly with Tri-Specific Binding Molecules that bind to CD3, CD8 and a Disease-Associated Antigen, involves a consideration of the effect and desirability of trogocytosis. “Trogocytosis” is a process through which a cell can acquire a portion of a cell membrane of a contacting cell (Masuda, S. et al. (2013) “Possible Implication Of Fc γ Receptor-Mediated Trogocytosis In Susceptibility To Systemic Autoimmune Disease,” Clin. Dev. Immunol. 2013: Article ID 345745, 6 pages); Dhainaut, M. et al. (2014) “Regulation of Immune Reactivity by Intercellular Transfer,” Front Immunol. 5:112; Ahmed, K. A. et al. (2011) “Mechanisms Of Cellular Communication Through Intercellular Protein Transfer,” J. Cell. Mol. Med. 15(7):1458-1473; Ahmed, K. A. et al. (2008) “Intercellular Trogocytosis Plays An Important Role In Modulation Of Immune Responses,” Cell. Mol. Immunol. 5(4):261-269; LeMaoult, J. et al. (2007) “Exchanges Of Membrane Patches (Trogocytosis) Split Theoretical And Actual Functions Of Immune Cells,” Hum. Immunol. 68(4):240-243; Caumartin. J. et al. (2006) “Intercellular Exchanges Of Membrane Patches (Trogocytosis) Highlight The Next Level Of Immune Plasticity,” Transpl. Immunol. 17(1):20-22).
(225) The acquisition of cognate MHC class I ligands by trogocytosis induces cytotoxic T lymphocytes to become “Acquired Treg” cells that mediate the killing (“fratricide”) of other cytotoxic T cells, thereby contributing to the clearance of CD8.sup.+ cells (D'Acquisto, F. et al. (2011) “CD3.sup.+CD4.sup.− CD8.sup.− (Double Negative) T Cells: Saviours Or Villains Of The Immune Response?” Biochem. Pharmacol. 82:333-340; Joly, E. et al. (2003) “What Is Trogocytosis And What Is Its Purpose?” Nat. Immunol. 4:815-; Hudrisier, D. et al. (2007) “Capture Of Target Cell Membrane Components Via Trogocytosis Is Triggered By A Selected Set Of Surface Molecules On T Or B Cells,” J. Immunol. 178:3637-3647).
(226) A Tri-Specific Binding Molecule of the present invention that possesses a CD3 Binding Domain as its Site C position has the attributes of an anti-CD3 antibody, and likewise such a Tri-Specific Binding Molecule that possesses a CD8 Binding Domain as its Site C position has the attributes of an anti-CD8 antibody. It has been shown that a neutrophil, monocyte or macrophage having an Fc receptor that is bound to the Fc Domain of an anti-CD8 antibody (that has bound to a CD8 molecule of a T cell) is capable of transferring the antibody and the bound CD8 molecule from the T cell to itself via trogocytosis and of then rapidly internalizing the antibody; bystander molecules, such as TCR and CD3 may also be transferred in this process (Masuda, S. et al., (2013) “Possible Implication of Fcg Receptor-Mediated Trogocytosis in Susceptibility to Systemic Autoimmune Disease,” Clin. Develop. Immunol. 2013:Article ID 345745, 6 pages).
(227) The structures of CD3 and CD8 differ in that CD3 lies close to the cell membrane, while CD8 extends further from the cell membrane. It is thus expected that Fc receptor trogocytosis of CD3 by an anti-CD3 antibody would be more efficient than Fc receptor trogocytosis of CD8 by an anti-CD8 antibody.
(228) This phenomenon indicates that a Tri-Specific Binding Molecule of the present invention that binds to CD3, CD8 and a Disease-Associated Antigen whose CD3 Binding Domain is located on the Site C position will exhibit less cytotoxicity than an analogous Tri-Specific Binding Molecule in which the CD3 Binding Domain is located at Site A or at Site B. Thus, by electing to place the CD3 Binding Domain on the Site C position (as opposed to either of the Sites A or B), one may modulate the extent of cytotoxicity. Additionally, one may compound pharmaceutical compositions that contain a mixture of a “Site C” and a “Site A (or B)” CD3 in order to obtain a preferred extent of cytotoxicity.
(229) V. Anti-ROR1 mAb 1 Antibody
(230) As indicated above, one aspect of the present application is the provision of highly preferred humanized anti-ROR1 antibody (“ROR1 mAb 1”) whose Light Chain Variable Domain has the amino acid sequence (SEQ ID NO:51):
(231) TABLE-US-00052 QLVLTQSPSA SASLGSSVKL TCTLSSGHKT DTIDWYQQQP GKAPRYLMKL EGSGSYNKGS GVRDRFGSGS SSGADRYLTI SSLQSEDEAD YYCGTDYPGN YLFGGGTQLT VL
and whose Heavy Chain Variable Domain has the amino acid sequence (SEQ ID NO:52):
(232) TABLE-US-00053 QEQLVESGGG LVQPGGSLRL SCAASGFTFS DYYMSWVRQA PGKGLEWVAT IYPSSGKTYY ADSVKGRFTI SSDNAKNSLY LQMNSLRAED TAVYYCARDS YADDAALFDI WGQGTTVTVS S
(233) The sequences of CDR.sub.L1, CDR.sub.L2, and CDR.sub.L3 of the Light Chain Variable Domain of such ROR1 mAb 1 antibody are:
(234) TABLE-US-00054 Light Chain Variable Domain CDR.sub.L1 (SEQ ID NO: 117): TLSSGHKTDTID Light Chain Variable Domain CDR.sub.L2 (SEQ ID NO: 118): LEGSGSY Light Chain Variable Domain CDR.sub.L3 (SEQ ID NO: 119): GTDYPGNYL
(235) The sequences of CDR.sub.H1, CDR.sub.H2, and CDR.sub.H3 of the Heavy Chain Variable Domain of such ROR1 mAb 1 antibody are:
(236) TABLE-US-00055 Heavy Chain Variable Domain CDR.sub.H1 (SEQ ID NO: 120): GFTFSDYYMS Heavy Chain Variable Domain CDR.sub.H2 (SEQ ID NO: 121): TIYPSSGKTYYADSVKG Heavy Chain Variable Domain CDR.sub.H3 (SEQ ID NO: 122): DSYADDAALFDI
(237) The ROR1 mAb 1 antibody mediates increased cytotoxicity and is less immunogenic relative to prior art anti-ROR1 antibodies (e.g., anti-ROR1 antibody R12).
(238) The invention encompasses not only such sequences, but also intact ROR1 mAb 1 antibody derivatives (including chimeric or humanized derivatives thereof) that possess 1, 2 or 3 of the CDRs of such Light Chain Variable Domain (SEQ ID NO:51, CDRs shown underlined) or 1, 2 or 3 of the CDRs of such Heavy Chain Variable Domain (SEQ ID NO:52; CDRs shown underlined), and which immunospecifically bind to ROR1. More preferably, such encompassed antibodies, chimeric antibodies and humanized antibodies will possess 1, 2 or 3 of the CDRs of such Light Chain Variable Domain (SEQ ID NO:51, CDRs shown underlined) and also 1, 2 or 3 of the CDRs of such Heavy Chain Variable Domain (SEQ ID NO:52; CDRs shown underlined), and will immunospecifically bind to ROR1. Most preferably, such encompassed antibodies, chimeric antibodies and humanized antibodies will possess all 3 of the CDRs of such Light Chain Variable Domain, and all 3 of the CDRs of such Heavy Chain Variable Domain and be capable of immunospecifically binding to ROR1.
(239) The invention additionally encompasses fragments and derivatives of such encompassed ROR1 mAb 1 antibodies, including Fab, Fab′, F(ab′)2 Fv), single-chain (ScFv), “BiTEs®,” “DART™” diabody molecules, mutants thereof, naturally occurring variants, and fusion proteins, all of which comprise 1, 2, or 3 of the Light Chain Variable Domain CDRs, or 1, 2, or 3 of the Heavy Chain Variable Domain CDRs, or 1, 2, or 3 of the Light Chain Variable Domain CDRs, and also 1, 2, or 3 of the Heavy Chain Variable Domain CDRs, and which are capable of immunospecifically binding to ROR1.
(240) In a preferred embodiment, such ROR1 mAb 1 antibodies or their fragments or derivatives may have variant Fc Domains. Modification of the Fc Domain normally leads to an altered phenotype, for example altered serum half-life, altered stability, altered susceptibility to cellular enzymes or altered effector function. It may be desirable to modify the antibody of the invention with respect to effector function, so as to enhance the effectiveness of the antibody in treating cancer, for example. Reduction or elimination of effector function is desirable in certain cases, for example in the case of antibodies whose mechanism of action involves blocking or antagonism, but not killing of the cells bearing a target antigen. Increased effector function is generally desirable when directed to undesirable cells, such as tumor and foreign cells, where the FcγRs are expressed at low levels, for example, tumor specific B cells with low levels of FcγRIIB (e.g., non-Hodgkins lymphoma, CLL, and Burkitt's lymphoma). In said embodiments, molecules of the invention with conferred or enhanced effector function activity are useful for the treatment and/or prevention of a disease, disorder or infection where an enhanced efficacy of effector function activity is desired.
(241) In certain embodiments, such ROR1 mAb 1 antibodies or their fragments or derivatives comprise one or more modifications to the amino acids of the Fc Domain, which reduce the affinity and avidity of the Fc Domain of such molecule for one or more FcγR receptors. In other embodiments, such ROR1 mAb 1 antibodies or their fragments or derivatives may comprise one or more modifications to the amino acids of the Fc Domain that increase the affinity and avidity of the Fc Domain of such molecule for one or more FcγR receptors. In other embodiments, the molecules comprise a variant Fc Domain wherein said variant confers or mediates increased ADCC activity and/or an increased binding to FcγRIIA, relative to a molecule comprising no Fc Domain or comprising a wild-type Fc Domain. In alternate embodiments, the molecules comprise a variant Fc Domain wherein said variant confers or mediates decreased ADCC activity (or other effector function) and/or an increased binding to FcγRIIB, relative to a molecule comprising no Fc Domain or comprising a wild-type Fc Domain.
(242) In some embodiments, the invention encompasses such ROR1 mAb 1 antibodies or their fragments or derivatives that comprise a variant Fc Domain, which variant Fc Domain does not show a detectable binding to any FcγR, relative to a comparable molecule comprising the wild-type Fc Domain. In other embodiments, the invention encompasses such ROR1 mAb 1 antibodies or their fragments or derivatives that comprise a variant Fc Domain, which variant Fc Domain only binds a single FcγR, preferably one of FcγRIIA, FcγRIIB, or FcγRIIIA.
(243) Such ROR1 mAb 1 antibodies or their fragments or derivatives may comprise altered affinities for an activating and/or inhibitory Fcγ receptor. In one embodiment, the antibody or molecule comprises a variant Fc Domain that has increased affinity for FcγRIIB and decreased affinity for FcγRIIIA and/or FcγRIIA, relative to a comparable molecule with a wild-type Fc Domain. In another embodiment, such ROR1 mAb 1 antibodies or their fragments or derivatives may comprise a variant Fc Domain that has decreased affinity for FcγRIIB and increased affinity for FcγRIIIA and/or FcγRIIA, relative to a comparable molecule with a wild-type Fc Domain. In yet another embodiment, such ROR1 mAb 1 antibodies or their fragments or derivatives comprise a variant Fc Domain that has decreased affinity for FcγRIIB and decreased affinity for FcγRIIIA and/or FcγRIIA, relative to a comparable molecule with a wild-type Fc Domain. In still another embodiment, such ROR1 mAb 1 antibodies or their fragments or derivatives may comprise a variant Fc Domain that has unchanged affinity for FcγRIIB and decreased (or increased) affinity for FcγRIIIA and/or FcγRIIA, relative to a comparable molecule with a wild-type Fc Domain.
(244) In certain embodiments, the invention encompasses such ROR1 mAb 1 antibodies or their fragments or derivatives that comprise a variant Fc Domain with an altered affinity for FcγRIIIA and/or FcγRIIA such that the immunoglobulin has an enhanced effector function, e.g., ADCC. Non-limiting examples of effector cell functions include ADCC, antibody dependent cellular phagocytosis (ADCP), phagocytosis, opsonization, opsonophagocytosis, cell binding, rosetting, C1q binding, and CDC.
(245) In a preferred embodiment, the alteration in affinity or effector function is at least 2-fold, preferably at least 4-fold, at least 5-fold, at least 6-fold, at least 7-fold, at least 8-fold, at least 9-fold, at least 10-fold, at least 50-fold, or at least 100-fold, relative to a comparable molecule comprising a wild-type Fc Domain. In other embodiments of the invention, the variant Fc Domain specifically binds one or more FcRs with at least 65%, preferably at least 70%, 75%, 80%, 85%, 90%, 95%, 100%, 125%, 150%, 175%, 200%, 225%, or 250% greater affinity relative to a molecule comprising a wild-type Fc Domain. Such measurements can be in vivo or in vitro assays, and in a preferred embodiment are in vitro assays such as ELISA or surface plasmon resonance assays.
(246) In different embodiments, such ROR1 mAb 1 antibodies or their fragments or derivatives comprise a variant Fc Domain wherein said variant agonizes at least one activity of an FcγR receptor, or antagonizes at least one activity of an FcγR receptor. In a preferred embodiment, the molecules comprise a variant that agonizes (or antagonizes) one or more activities of FcγRIIB, for example, B cell receptor-mediated signaling, activation of B cells, B cell proliferation, antibody production, intracellular calcium influx of B cells, cell cycle progression, FcγRIIB-mediated inhibition of FcεRI signaling, phosphorylation of FcγRIIB, SHIP recruitment, SHIP phosphorylation and association with Shc, or activity of one or more downstream molecules (e.g., MAP kinase, JNK, p38, or Akt) in the FcγRIIB signal transduction pathway. In another embodiment, the molecules comprise a variant that agonizes (or antagonizes) one or more activities of FcεRI, for example, mast cell activation, calcium mobilization, degranulation, cytokine production, or serotonin release.
(247) In certain embodiments, such ROR1 mAb 1 antibodies or their fragments comprise an Fc Domain-comprising domain from two or more IgG isotypes (e.g., IgG1, IgG2, IgG3 and IgG4). The various IgG isotypes exhibit differing physical and functional properties including serum half-life, complement-fixation, FcγR binding affinities and effector function activities (e.g. ADCC, CDC, etc.) due to differences in the amino acid sequences of their hinge and/or Fc Domains, for example as described in Flesch, B. K. and Neppert, J. (1999) “Functions Of The Fc Receptors For Immunoglobulin G,” J. Clin. Lab. Anal. 14:141-156; Chappel, M. S. et al. (1993) “Identification Of A Secondary Fc Gamma RI Binding Site Within A Genetically Engineered Human IgG Antibody,” J. Biol. Chem. 33:25124-25131; Chappel, M. S. et al. (1991) “Identification Of The Fc Gamma Receptor Class I Binding Site In Human IgG Through The Use Of Recombinant IgG1/IgG2 Hybrid And Point-Mutated Antibodies,” Proc. Natl. Acad. Sci. (U.S.A.) 88:9036-9040; Brüggemann, M. et al. (1987) “Comparison Of The Effector Functions Of Human Immunoglobulins Using A Matched Set Of Chimeric Antibodies,” J. Exp. Med 166:1351-1361. This type of variant Fc Domain may be used alone, or in combination with an amino acid modification, to affect Fc-mediated effector function and/or binding activity. In combination, the amino acid modification and IgG hinge/Fc Domain may display similar functionality (e.g., increased affinity for FcγRIIA) and may act additively or, more preferably, synergistically to modify the effector functionality in the molecule of the invention, relative to a molecule of the invention comprising a wild-type Fc Domain. In other embodiments, the amino acid modification and IgG Fc Domain may display opposite functionality (e.g., increased and decreased affinity for FcγRIIA, respectively) and may act to selectively temper or reduce a specific functionality in the molecule of the invention, relative to a molecule of the invention not comprising an Fc Domain or comprising a wild-type Fc Domain of the same isotype.
(248) In a preferred specific embodiment, such ROR1 mAb 1 antibodies or their fragments comprise a variant Fc Domain, wherein said variant Fc Domain comprises at least one amino acid modification relative to a wild-type Fc Domain, such that the molecule has an altered affinity for an FcR, provided that said variant Fc Domain does not have a substitution at positions that make a direct contact with FcγR based on crystallographic and structural analysis of Fc-FcR interactions such as those disclosed by Sondermann, P. et al. (2000) “The 3.2-A Crystal Structure Of The Human IgG1 Fc Fragment-Fc GammaRIII Complex,” Nature 406:267-273. Examples of positions within the Fc Domain that make a direct contact with FcγR are amino acid residues 234-239 (Hinge Domain), amino acid residues 265-269 (B/C loop), amino acid residues 297-299 (C′/E loop), and amino acid residues 327-332 (F/G loop). In some embodiments, the molecules of the invention comprise variant Fc Domains comprise modification of at least one residue that does not make a direct contact with an FcγR based on structural and crystallographic analysis, e.g., is not within the Fc-FcγR binding site.
(249) Variant Fc Domains are well-known in the art, and any known Fc variant may be used in the present invention to confer or modify the effector function exhibited by such ROR1 mAb 1 antibodies or their fragments comprising an Fc Domain (or portion thereof) as functionally assayed, e.g., in an NK dependent or macrophage dependent assay. For example, Fc Domain variants identified as altering effector function are disclosed in PCT Publications No. WO 04/063351; WO 06/088494; WO 07/024249; WO 06/113665; WO 07/021841; WO 07/106707; WO 2008/140603, and any suitable variant disclosed therein may be used in the present molecules.
(250) In certain embodiments, such ROR1 mAb 1 antibodies or their fragments comprise a variant Fc Domain, having one or more amino acid modifications in one or more sites, which modification(s) alter (relative to a wild-type Fc Domain) the Ratio of Affinities of the variant Fc Domain to an activating FcγR (such as FcγRIIA or FcγRIIIA) relative to an inhibiting FcγR (such as FcγRIIB):
(251)
(252) Where an Fc variant has a Ratio of Affinities greater than 1, the methods of the invention have particular use in providing a therapeutic or prophylactic treatment of a disease, disorder, or infection, or the amelioration of a symptom thereof, where an enhanced efficacy of effector cell function (e.g., ADCC) mediated by FcγR is desired, e.g., cancer or infectious disease. Where an Fc variant has a Ratio of Affinities less than 1, the methods of the invention have particular use in providing a therapeutic or prophylactic treatment of a disease or disorder, or the amelioration of a symptom thereof, where a decreased efficacy of effector cell function mediated by FcγR is desired, e.g., autoimmune or inflammatory disorders. Table 3 lists exemplary single, double, triple, quadruple and quintuple mutations by whether their Ratio of Affinities is greater than or less than 1, and more information concerning these mutations may be found in PCT Publications No. WO 04/063351; WO 06/088494; WO 07/024249; WO 06/113665; WO 07/021841; WO 07/106707; WO 2008/140603.
(253) TABLE-US-00056 TABLE 3 Exemplary Single and Multiple Mutations Listed by Ratio of Affinities Ratio Single Double Triple Quadruple Quintuple >1 F243L F243L & F243L, P247L & L234F, F243L, L235V, F243L, D270E R292P N421K R292P & Y300L R292P, Y300L & R292G F243L & F243L, R292P & L235I, F243L, P396L R292P Y300L Y300L R292P & Y300L L235P, F243L, F243L & F243L, R292P & L235Q, F243L, R292P, Y300L & P396L V305I R292P & Y300L P396L D270E & F243L, R292P & F243L, P247L, F243L, R292P, P396L P396L D270E & N421K V305I, Y300L & R292P & F243L, Y300L & F243L, R255L, P396L Y300L P396L D270E & P396L R292P & P247L, D270E & F243L, D270E, V305I N421K G316D & R416G R292P & R255L, D270E & F243L, D270E, P396L P396L K392T & P396L Y300L & D270E, G316D & F243L, D270E, P396L R416G P396L & Q419H P396L & D270E, K392T & F243L, R292P, Q419H P396L Y300L, & P396L D270E, P396L & F243L, R292P, Q419H V305I & P396L V284M, R292L P247L, D270E, & K370N Y300L & N421K R292P, Y300L & R255L, D270E, P396L R292G & P396L R255L, D270E, Y300L & P396L D270E, G316D, P396L & R416G <1 Y300L F243L & F243L, R292P & P396L P396L V305I P247L & N421K R255L & P396L R292P & V305I K392T & P396L P396L & Q419H
(254) In a specific embodiment, in variant Fc Domains, any amino acid modifications (e.g., substitutions) at any of positions 235, 240, 241, 243, 244, 247, 262, 263, 269, 298, 328, or 330 and preferably one or more of the following residues: A240, 1240, L241, L243, H244, N298, 1328 or V330. In a different specific embodiment, in variant Fc Domains, any amino acid modifications (e.g., substitutions) at any of positions 268, 269, 270, 272, 276, 278, 283, 285, 286, 289, 292, 293, 301, 303, 305, 307, 309, 331, 333, 334, 335, 337, 338, 340, 360, 373, 376, 416, 419, 430, 434, 435, 437, 438 or 439 and preferably one or more of the following residues: H280, Q280, Y280, G290, S290, T290, Y290, N294, K295, P296, D298, N298, P298, V298, 1300 or L300.
(255) In a preferred embodiment, in variant Fc Domains that bind an FcγR with an altered affinity, any amino acid modifications (e.g., substitutions) at any of positions 255, 256, 258, 267, 268, 269, 270, 272, 276, 278, 280, 283, 285, 286, 289, 290, 292, 293, 294, 295, 296, 298, 300, 301, 303, 305, 307, 309, 312, 320, 322, 326, 329, 330, 332, 331, 333, 334, 335, 337, 338, 339, 340, 359, 360, 373, 376, 416, 419, 430, 434, 435, 437, 438 or 439. Preferably, the variant Fc Domain has any of the following residues: A256, N268, Q272, D286, Q286, S286, A290, S290, A298, M301, A312, E320, M320, Q320, R320, E322, A326, D326, E326, N326, S326, K330, T339, A333, A334, E334, H334, L334, M334, Q334, V334, K335, Q335, A359, A360 or A430.
(256) In a different embodiment, in variant Fc Domains that bind an FcγR (via its Fc Domain) with a reduced affinity, any amino acid modifications (e.g., substitutions) at any of positions 252, 254, 265, 268, 269, 270, 278, 289, 292, 293, 294, 295, 296, 298, 300, 301, 303, 322, 324, 327, 329, 333, 335, 338, 340, 373, 376, 382, 388, 389, 414, 416, 419, 434, 435, 437, 438, or 439.
(257) In a different embodiment, in variant Fc Domains that bind an FcγR (via its Fc Domain) with an enhanced affinity, any amino acid modifications (e.g., substitutions) at any of positions 280, 283, 285, 286, 290, 294, 295, 298, 300, 301, 305, 307, 309, 312, 315, 331, 333, 334, 337, 340, 360, 378, 398, or 430. In a different embodiment, in variant Fc Domains that binds FcγRIIA with an enhanced affinity, any of the following residues: A255, A256, A258, A267, A268, N268, A272, Q272, A276, A280, A283, A285, A286, D286, Q286, S286, A290, S290, M301, E320, M320, Q320, R320, E322, A326, D326, E326, S326, K330, A331, Q335, A337 or A430.
(258) Preferred variants include one or more modifications at any of positions: 228, 230, 231, 232, 233, 234, 235, 239, 240, 241, 243, 244, 245, 247, 262, 263, 264, 265, 266, 271, 273, 275, 281, 284, 291, 296, 297, 298, 299, 302, 304, 305, 313, 323, 325, 326, 328, 330 or 332.
(259) Particularly preferred variants include one or more modifications selected from groups A-AI:
(260) TABLE-US-00057 A 228E, 228K, 228Y or 228G; B 230A, 230E, 230Y or 230G; C 231E, 231K, 231Y, 231P or 231G; D 232E, 232K, 232Y, 232G; E 233D; F 234I or 234F; G 235D, 235Q, 235P, 235I or 235V; H 239D, 239E, 239N or 239Q; I 240A, 240I, 240M or 240T; J 243R, 243, 243Y, 243L, 243Q, 243W, 243H or 243I; K 244H; L 245A; M 247G, 247V or 247L; N 262A, 262E, 262I, 262T, 262E or 262F; O 263A, 263I, 263M or 263T; P 264F, 264E, 264R, 264I, 264A, 264T or 264W; Q 265F, 265Y, 265H, 265I, 265L, 265T, 265V, 265N or 265Q; R 266A, 266I, 266M or 266T; S 271D, 271E, 271N, 271Q, 271K, 271R, 271S, 271T, 271H, 271A, 271V, 271L, 271I, 271F, 271M, 271Y, 271W or 271G; T 273I; U 275L or 275W; V 281D, 281K, 281Y or 281P; W 284E, 284N, 284T, 284L, 284Y or284M; X 291D, 291E, 291Q, 291T, 291H, 291I or 291G; Y 299A, 299D, 299E, 299F, 299G, 299H, 299I, 299K, 299L, 299M, 299N, 299P, 299Q, 299R, 299S, 299V, 299W or 299Y; Z 302I; AA 304D, 304N, 304T, 304H or 304L AB 305I; AC 313F; AD 323I; AE 325A, 325D, 325E, 325G, 325H, 325I, 325L, 325K, 325R, 325S, 325F, 325M, 325T, 325V, 325Y, 325W or 325P; AF 328D, 328Q, 328K, 328R, 328S, 328T, 328V, 328I, 328Y, 328W, 328P, 328G, 328A, 328E, 328F, 328H, 328M or 328N; AG 330L, 330Y, 330I or 330V; AH 332A, 332D, 332E, 332H, 332N, 332Q, 332T, 332K, 332R, 332S, 332V, 332L, 332F, 332M, 332W, 332P, 332G or 332Y; and AI 336E, 336K or 336Y
(261) Still more particularly preferred variants include one or more modifications selected from groups 1-105:
(262) TABLE-US-00058 Group Variant 1 A330L/I332E 2 D265F/N297E/I332E 3 D265Y/N297D/I332E 4 D265Y/ N297D/T299L/I332E 5 F241E/F243Q/V262T/V264F 6 F241E/F243Q/V262T/V264E/I332E 7 F241E/F243R/V262E/V264R 8 F241E/F243R/V262E/V264R/I332E 9 F241E/F243Y/V262T/V264R 10 F241E/F243Y/V262T/V264R/I332E 11 F241L/F243L/V262I/V264I 12 F241L/V262I 13 F241R/F243Q/V262T/V264R 14 F241R/F243Q/V262T/V264R/I332E 15 F241W/F243W/V262A/V264R 16 F241Y/F243Y/V262T/V264T 17 F241Y/F243Y/V262T/V264T/N297D/I332E 18 F243L/V262I/V264W 19 P243L/V264I 20 L328D/I332E 21 L328E/I332E 22 L328H/I332E 23 L328I/I332E 24 L328M/I332E 25 L328N/I332E 26 L328Q/I332E 27 L328T/I332E 28 L328V/I332E 29 N297D/A330Y/I332E 30 N297D/I332E 31 N297D/I332E/S239D/A330L 32 N297D/S298A/A330Y/I332E 33 N297D/T299L/I332E 34 N297D/T299F/I332E/N297D/T299H/I332E 35 N297D/T299I/I332E 36 N297D/T299L/I332E 37 N297D/T299V/I332E 38 N297E/I332E 39 N297S/I332E 40 P230A/E233D/I332E 41 P244H/P245A/P247V 42 S239D/A330L/I332E 43 S239D/A330Y/ I332E 44 S239D/A330Y/I332E/K326E 45 S239D/A330Y/I332E/K326T 46 S239D/A330Y/I332E/L234I 47 S239D/A330Y/I332E/L235D 48 S239D/A330Y/I332E/V240I 49 S239D/A330Y/I332E/V264T 50 S239D/A330Y/I332E/V266I 51 S239D/D265F N297D/I332E 52 S239D/D265H/N297D/I332E 53 S239D/D265I/N297D/I332E 54 S239D/D265L/N297D/I332E 55 S239D/D265T/N297D/I332E 56 S239D/D265V/N297D/I332E 57 S239D/D265Y/N297D/I332E 58 S239D/I332D 59 S239D/I332E 60 S239D/I332E/A330I 61 S239D/I332N 62 S239D/I332Q 63 S239D/N297D/I332E 64 S239D/N297D/I332E/A330Y 65 S239D/N297D/I332E/A330Y/F241S/F243H/ V262T/V264T 66 S239D/N297D/I332E/K326E 67 S239D/N297D/I332E/L235D 68 S239D/S298A/I332E 69 S239D/V264I/A330L/I332E 70 S239D/V264I/I332E 71 S239D/V264I/S298A/I332E 72 S239E/D265N 73 S239E/D265Q 74 S239E/I332D 75 S239E/I332E 76 S239E/I332N 77 S239E/I332Q 78 S239E/N297D/I332E 79 S239E/V264I/A330Y/I332 E 80 S239E/V264I/I332 E 81 S239E/V264I/S298A/A330Y/I332E 82 S239N/A330L/I332E 83 S239N/A330Y/I332E 84 S239N/I332D 85 S239N/I332E 86 S239N/I332N 87 S239N/I332Q 88 S239N1S298A/I332E 89 S239Q/I332D 90 S239Q/I332E 91 S239Q/I332N 92 S239Q/I332Q 93 S239Q/V264I/I332E 94 S298A/I332E 95 V264E/N297D/I332E 96 V264I/A330L/I332E 97 V264I/A330Y/I332E 98 V264I/I332E 99 V264I/ S298A/I332E 100 Y296D/N297D/I332E 101 Y296E/N297D/I332 E 102 Y296H/N297D/I332E 103 Y296N/N297D/I332E 104 Y296Q/N297I/I332E 105 Y296T/N297D/I332E
(263) In one embodiment, such ROR1 mAb 1 antibodies or their fragments will comprise a variant Fc Domain having at least one modification in the Fc Domain. In certain embodiments, the variant Fc Domain comprises at least one substitution selected from the group consisting of L235V, F243L, R292P, Y300L, V305I, and P396L, wherein said numbering is that of the EU index as in Kabat. In a specific embodiment, the variant Fc Domain comprises: (A) at least one substitution selected from the group consisting of F243L, R292P, Y300L, V305I, and P396L; (B) at least two substitutions selected from the group consisting of: (1) F243L and P396L; (2) F243L and R292P; and (3) R292P and V305I; (C) at least three substitutions selected from the group consisting of: (1) F243L, R292P and Y300L; (2) F243L, R292P and V305I; (3) F243L, R292P and P396L; and (4) R292P, V305I and P396L; (D) at least four substitutions selected from the group consisting of: (1) F243L, R292P, Y300L and P396L; and (2) F243L, R292P, V305I and P396L; or (E) at least the five substitutions selected from the group consisting of: (1) F243L, R292P, Y300L, V305I and P396L; and (2) L235V, F243L, R292P, Y300L and P396L.
(264) In another specific embodiment, the variant Fc Domain comprises substitutions of: (A) F243L, R292P, and Y300L; (B) L235V, F243L, R292P, Y300L, and P396L; or (C) F243L, R292P, Y300L, V305I, and P396L.
(265) In other embodiments, such ROR1 mAb 1 antibodies or their fragments may possess any Fc variant known in the art, such as those disclosed in Jefferis, R. et al. (2002) “Interaction Sites On Human IgG-Fc For FcgammaR: Current Models,” Immunol. Lett. 82:57-65; Presta, L. G. et al. (2002) “Engineering Therapeutic Antibodies For Improved Function,” Biochem. Soc. Trans. 30:487-90; Idusogie, E. E. et al. (2001) “Engineered Antibodies With Increased Activity To Recruit Complement,” J. Immunol. 166:2571-75; Shields, R. L. et al. (2001) “High Resolution Mapping Of The Binding Site On Human IgG1 For Fc Gamma RI, Fc Gamma RI, Fc Gamma RIII, And FcRn And Design Of IgG1 Variants With Improved Binding To The Fc gamma R,” J. Biol. Chem. 276:6591-6604; Idusogie, E. E. et al. (2000) “Mapping Of The C1q Binding Site On Rituxan, A Chimeric Antibody With A Human IgG Fc,” J. Immunol. 164:4178-84; Reddy, M. P. et al. (2000) “Elimination Of Fc Receptor-Dependent Effector Functions Of A Modified IgG4 Monoclonal Antibody To Human CD4,” J. Immunol. 164:1925-1933; Xu, D. et al. (2000) “In Vitro Characterization of Five Humanized OKT3 Effector Function Variant Antibodies,” Cell. Immunol. 200:16-26; Armour, K. L. et al. (1999) “Recombinant human IgG Molecules Lacking Fcgamma Receptor I Binding And Monocyte Triggering Activities,” Eur. J. Immunol. 29:2613-24; Jefferis, R. et al. (1996) “Modulation Of Fc(Gamma)R And Human Complement Activation By IgG3-Core Oligosaccharide Interactions,” Immunol. Lett. 54:101-04; Lund, J. et al. (1996) “Multiple Interactions Of IgG With Its Core Oligosaccharide Can Modulate Recognition By Complement And Human Fc Gamma Receptor I And Influence The Synthesis Of Its Oligosaccharide Chains,” J. Immunol. 157:4963-4969; Hutchins et al. (1995) “Improved Biodistribution, Tumor Targeting, And Reduced Immunogenicity In Mice With A Gamma 4 Variant Of Campath-1H,” Proc. Natl. Acad. Sci. (U.S.A.) 92:11980-84; Jefferis, R. et al. (1995) “Recognition Sites On Human IgG For Fc Gamma Receptors: The Role Of Glycosylation,” Immunol. Lett. 44:111-17; Lund, J. et al. (1995) “Oligosaccharide-Protein Interactions In IgG Can Modulate Recognition By Fc Gamma Receptors,” FASEB J. 9:115-19; Alegre, M. L. et al. (1994) “A Non-Activating “Humanized” Anti-CD3 Monoclonal Antibody Retains Immunosuppressive Properties In Vivo,” Transplantation 57:1537-1543; Lund et al. (1992) “Multiple Binding Sites On The CH2 Domain Of IgG For Mouse Fc Gamma R11,” Mol. Immunol. 29:53-59; Lund et al. (1991) “Human Fc Gamma RI And Fc Gamma RI Interact With Distinct But Overlapping Sites On Human IgG,” J. Immunol. 147:2657-2662; Duncan, A. R. et al. (1988) “Localization Of The Binding Site For The Human High-Affinity Fc Receptor On IgG,” Nature 332:563-564; U.S. Pat. Nos. 5,624,821; 5,885,573; 6,194,551; 7,276,586; and 7,317,091; and PCT Publications WO 00/42072 and PCT WO 99/58572.
(266) In some embodiments, such ROR1 mAb 1 antibodies or their fragments may further comprise one or more glycosylation sites, so that one or more carbohydrate moieties are covalently attached to the molecule. Preferably, such ROR1 mAb 1 antibodies or their fragments with one or more glycosylation sites and/or one or more modifications in the Fc Domain confer or have an enhanced antibody mediated effector function, e.g., enhanced ADCC activity, compared to the unmodified ROR1 mAb 1 antibodies or fragment. In some embodiments, the invention further comprises such ROR1 mAb 1 antibodies or their fragments comprising one or more modifications of amino acids that are directly or indirectly known to interact with a carbohydrate moiety of the Fc Domain, including but not limited to amino acids at positions 241, 243, 244, 245, 245, 249, 256, 258, 260, 262, 264, 265, 296, 299, and 301. Amino acids that directly or indirectly interact with a carbohydrate moiety of an Fc Domain are known in the art, see, e.g., Jefferis, R. et al. (1995) “Recognition Sites On Human IgG For Fc Gamma Receptors: The Role Of Glycosylation,” Immunol. Lett. 44:111-17.
(267) In another embodiment, the invention encompasses such ROR1 mAb 1 antibodies or their fragments that have been modified by introducing one or more glycosylation sites into one or more sites of the molecules, preferably without altering the functionality of the molecules, e.g., binding activity to target antigen or FcγR. Glycosylation sites may be introduced into the variable and/or constant region of the molecules of the invention. As used herein, “glycosylation sites” include any specific amino acid sequence in an antibody to which an oligosaccharide (i.e., carbohydrates containing two or more simple sugars linked together) will specifically and covalently attach. Oligosaccharide side chains are typically linked to the backbone of an antibody via either N- or O-linkages. N-linked glycosylation refers to the attachment of an oligosaccharide moiety to the side chain of an asparagine residue. O-linked glycosylation refers to the attachment of an oligosaccharide moiety to a hydroxyamino acid, e.g., serine, threonine. Such ROR1 mAb 1 antibodies or their fragments may comprise one or more glycosylation sites, including N-linked and O-linked glycosylation sites. Any glycosylation site for N-linked or O-linked glycosylation known in the art may be used in accordance with the instant invention. An exemplary N-linked glycosylation site is the amino acid sequence: Asn-X-Thr/Ser, wherein X may be any amino acid and Thr/Ser indicates a threonine or a serine. Such a site or sites may be introduced into a molecule of the invention using methods well-known in the art to which this invention pertains (see for example, I
(268) In some embodiments, the invention encompasses methods of modifying the carbohydrate content of such ROR1 mAb 1 antibodies or their fragments by adding or deleting a glycosylation site. Methods for modifying the carbohydrate content of antibodies (and molecules comprising antibody domains, e.g., Fc Domain) are well-known in the art and encompassed within the invention, see, e.g., U.S. Pat. No. 6,218,149; EP 0 359 096 B1; U.S. Publication No. US 2002/0028486; WO 03/035835; U.S. Publication No. 2003/0115614; U.S. Pat. Nos. 6,218,149; 6,472,511; all of which are incorporated herein by reference in their entirety. In other embodiments, the invention encompasses methods of modifying the carbohydrate content of such ROR1 mAb 1 antibodies or their fragments by deleting one or more endogenous carbohydrate moieties of the molecule. In a specific embodiment, the invention encompasses shifting the glycosylation site of the Fc Domain of an antibody, by modifying positions adjacent to 297. In a specific embodiment, the invention encompasses modifying position 296 so that position 296 and not position 297 is glycosylated.
(269) Effector function can be modified by techniques such as those described in PCT Publications No. WO 04/063351; WO 06/088494; WO 07/024249; WO 06/113665; WO 07/021841; WO 07/106707; WO 2008/140603, or by other means. For example, cysteine residue(s) may be introduced in the Fc Domain, thereby allowing interchain disulfide bond formation in this region, resulting in the generation of a homodimeric antibody that may have improved internalization capability and/or increased complement-mediated cell killing and ADCC. See Caron, P. C. et al. (1992) “Engineered Humanized Dimeric Forms Of IgG Are More Effective Antibodies,” J. Exp. Med. 176:1191-1195; Shopes, B. (1992) “A Genetically Engineered Human IgG Mutant With Enhanced Cytolytic Activity,” J. Immunol. 148(9):2918-2922. Homodimeric antibodies with enhanced antitumor activity may also be prepared using heterobifunctional cross-linkers as described in Wolff, E. A. et al. (1993) “Monoclonal Antibody Homodimers: Enhanced Antitumor Activity In Nude Mice,” Cancer Research 53:2560-2565. Alternatively, an antibody can be engineered which has dual Fc Domains and may thereby have enhanced complement lysis and ADCC capabilities (Stevenson, G. T. et al. (1989) “A Chimeric Antibody With Dual Fc Domains (bisFabFc) Prepared By Manipulations At The IgG Hinge,” Anti-Cancer Drug Design 3:219-230.
(270) The fact that a single amino acid alteration of a CDR residue can result in loss of functional binding (Rudikoff, S. etc. (1982) “Single Amino Acid Substitution Altering Antigen-Binding Specificity,” Proc. Natl. Acad. Sci. (USA) 79(6):1979-1983) provides a means for systematically identifying alternative functional CDR sequences. In one preferred method for obtaining such variant CDRs, a polynucleotide encoding the CDR is mutagenized (for example via random mutagenesis or by a site-directed method (e.g., polymerase chain-mediated amplification with primers that encode the mutated locus)) to produce a CDR having a substituted amino acid residue. By comparing the identity of the relevant residue in the original (functional) CDR sequence to the identity of the substituted (non-functional) variant CDR sequence, the BLOSUM62.iij substitution score for that substitution can be identified. The BLOSUM system provides a matrix of amino acid substitutions created by analyzing a database of sequences for trusted alignments (Eddy, S. R. (2004) “Where Did The BLOSUM62 Alignment Score Matrix Come From?,” Nature Biotech. 22(8):1035-1036; Henikoff, J. G. (1992) “Amino acid substitution matrices from protein blocks,” Proc. Natl. Acad. Sci. (USA) 89:10915-10919; Karlin, S. et al. (1990) “Methods For Assessing The Statistical Significance Of Molecular Sequence Features By Using General Scoring Schemes,” Proc. Natl. Acad. Sci. (USA) 87:2264-2268; Altschul, S. F. (1991) “Amino Acid Substitution Matrices From An Information Theoretic Perspective,” J. Mol. Biol. 219, 555-565. Currently, the most advanced BLOSUM database is the BLOSUM62 database (BLOSUM62.iij). Table 4 presents the BLOSUM62.iij substitution scores (the higher the score the more conservative the substitution and thus the more likely the substitution will not affect function). If an antigen-binding fragment comprising the resultant CDR fails to bind to ROR1, for example, then the BLOSUM62.iij substitution score is deemed to be insufficiently conservative, and a new candidate substitution is selected and produced having a higher substitution score. Thus, for example, if the original residue was glutamate (E), and the non-functional substitute residue was histidine (H), then the BLOSUM62.iij substitution score will be 0, and more conservative changes (such as to aspartate, asparagine, glutamine, or lysine) are preferred.
(271) TABLE-US-00059 TABLE 4 A R N D C Q E G H I L K M F P S T W Y V A +4 −1 −2 −2 0 −1 −1 0 −2 −1 −1 −1 −1 −2 −1 +1 0 −3 −2 0 R −1 +5 0 −2 −3 +1 0 −2 0 −3 −2 +2 −1 −3 −2 −1 −1 −3 −2 −3 N −2 0 +6 +1 −3 0 0 0 +1 −3 −3 0 −2 −3 −2 +1 0 −4 −2 −3 D −2 −2 +1 +6 −3 0 +2 −1 −1 −3 −4 −1 −3 −3 −1 0 −1 −4 −3 −3 C 0 −3 −3 −3 +9 −3 −4 −3 −3 −1 −1 −3 −1 −2 −3 −1 −1 −2 −2 −1 Q −1 +1 0 0 −3 +5 +2 −2 0 −3 −2 +1 0 −3 −1 0 −1 −2 −1 −2 E −1 0 0 +2 −4 +2 +5 −2 0 −3 −3 +1 −2 −3 −1 0 −1 −3 −2 −2 G 0 −2 0 −1 −3 −2 −2 +6 −2 −4 −4 −2 −3 −3 −2 0 −2 −2 −3 −3 H −2 0 +1 −1 −3 0 0 −2 +8 −3 −3 −1 −2 −1 −2 −1 −2 −2 +2 −3 I −1 −3 −3 −3 −1 −3 −3 −4 −3 +4 +2 −3 +1 0 −3 −2 −1 −3 −1 +3 L −1 −2 −3 −4 −1 −2 −3 −4 −3 +2 +4 −2 +2 0 −3 −2 −1 −2 −1 +1 K −1 +2 0 −1 −3 +1 +1 −2 −1 −3 −2 +5 −1 −3 −1 0 −1 −3 −2 −2 M −1 −1 −2 −3 −1 0 −2 −3 −2 +1 +2 −1 +5 0 −2 −1 −1 −1 −1 +1 F −2 −3 −3 −3 −2 −3 −3 −3 −1 0 0 −3 0 +6 −4 −2 −2 +1 +3 −1 P −1 −2 −2 −1 −3 −1 −1 −2 −2 −3 −3 −1 −2 −4 +7 −1 −1 −4 −3 −2 S +1 −1 +1 0 −1 0 0 0 −1 −2 −2 0 −1 −2 −1 +4 +1 −3 −2 −2 T 0 −1 0 −1 −1 −1 −1 −2 −2 −1 −1 −1 −1 −2 −1 +1 +5 −2 −2 0 W −3 −3 −4 −4 −2 −2 −3 −2 −2 −3 −2 −3 −1 +1 −4 −3 −2 +11 +2 −3 Y −2 −2 −2 −3 −2 −1 −2 −3 +2 −1 −1 −2 −1 +3 −3 −2 −2 +2 +7 −1 V 0 −3 −3 −3 −1 −2 −2 −3 −3 +3 +1 −2 +1 −1 −2 −2 0 −3 −1 +4
(272) The invention thus contemplates the use of random mutagenesis to identify improved CDRs. Phage display technology can alternatively be used to increase (or decrease) CDR affinity. This technology, referred to as affinity maturation, employs mutagenesis or “CDR walking” and re-selection uses the target antigen or an antigenic fragment thereof to identify antibodies having CDRs that bind with higher (or lower) affinity to the antigen when compared with the initial or parental antibody (See, e.g. Glaser et al. (1992) J. Immunology 149:3903). Mutagenizing entire codons rather than single nucleotides results in a semi-randomized repertoire of amino acid mutations. Libraries can be constructed consisting of a pool of variant clones each of which differs by a single amino acid alteration in a single CDR and which contain variants representing each possible amino acid substitution for each CDR residue. Mutants with increased (or decreased) binding affinity for the antigen can be screened by contacting the immobilized mutants with labeled antigen. Any screening method known in the art can be used to identify mutant antibodies with increased or decreased affinity to the antigen (e.g., ELISA) (See Wu et al. 1998, Proc. Natl. Acad. Sci. (U.S.A.) 95:6037; Yelton et al., 1995, J. Immunology 155:1994). CDR walking which randomizes the Light Chain may be used possible (see, Schier et al., 1996, J. Mol. Bio. 263:551).
(273) Methods for accomplishing such affinity maturation are described for example in: Krause, J. C. et al. (2011) “An Insertion Mutation That Distorts Antibody Binding Site Architecture Enhances Function Of A Human Antibody,” MBio. 2(1) pii: e00345-10. doi: 10.1128/mBio.00345-10; Kuan, C. T. et al. (2010) “Affinity-Matured Anti-Glycoprotein NMB Recombinant Immunotoxins Targeting Malignant Gliomas And Melanomas,” Int. J. Cancer 10.1002/ijc.25645; Hackel, B. J. et al. (2010) “Stability And CDR Composition Biases Enrich Binder Functionality Landscapes,” J. Mol. Biol. 401(1):84-96; Montgomery, D. L. et al. (2009) “Affinity Maturation And Characterization Of A Human Monoclonal Antibody Against HIV-1 gp41,” MAbs 1(5):462-474; Gustchina, E. et al. (2009) “Affinity Maturation By Targeted Diversification Of The CDR-H2 Loop Of A Monoclonal Fab Derived From A Synthetic Naïve Human Antibody Library And Directed Against The Internal Trimeric Coiled-Coil Of Gp41 Yields A Set Of Fabs With Improved HIV-1 Neutralization Potency And Breadth,” Virology 393(1):112-119; Finlay, W. J. et al. (2009) “Affinity Maturation Of A Humanized Rat Antibody For Anti-RAGE Therapy: Comprehensive Mutagenesis Reveals A High Level Of Mutational Plasticity Both Inside And Outside The Complementarity-Determining Regions,” J. Mol. Biol. 388(3):541-558; Bostrom, J. et al. (2009) “Improving Antibody Binding Affinity And Specificity For Therapeutic Development,” Methods Mol. Biol. 525:353-376; Steidl, S. et al. (2008) “In Vitro Affinity Maturation Of Human GM-CSF Antibodies By Targeted CDR-Diversification,” Mol. Immunol. 46(1):135-144; and Barderas, R. et al. (2008) “Affinity maturation of antibodies assisted by in silico modeling,” Proc. Natl. Acad. Sci. (USA) 105(26):9029-9034. As an example, multi-well plates may be coated with a selected ROR1 mAb 1 antibody (e.g., 100 ng/well in carbonate buffer at room temperature for 2 hrs) and subsequently incubated with soluble ROR1 added at a dilution of 1/10 and incubated at room temperature for 16 hours or diluted to a concentration of 50 ng/ml in PBS-T-BSA (0.05 ml added to each well and incubated for at least 2 h at room temperature). The plate is then washed and dilutions of recombinant antibodies starting at 0.5 μg/ml in PBS-T-BSA are then added and incubated for 1 hour at room temp. Binding of recombinant antibodies to the captured antigen is then measured using, for example, an anti-human IgG-HRP conjugate and TMB substrate. After stopping color development using dilute sulfuric acid, the plate is read at 450 nM and higher affinity antibodies identified (see, e.g., U.S. Pat. No. 7,351,803).
(274) VI. Pharmaceutical Compositions
(275) In one embodiment, the present invention includes pharmaceutical compositions for the treatment of a cancer or disease that is characterized by the presence of a Disease-Associated Antigen. Such compositions include bulk drug compositions useful in the manufacture of pharmaceutical compositions (e.g., impure or non-sterile compositions) and pharmaceutical compositions (i.e., compositions that are suitable for administration to a subject or patient) which can be used in the preparation of unit dosage forms. Such compositions comprise a prophylactically or therapeutically effective amount of a modified diabody of the present invention, or a combination of such agents and a pharmaceutically acceptable carrier. Preferably, compositions of the invention comprise a prophylactically or therapeutically effective amount of one or more molecules of the invention and a pharmaceutically acceptable carrier. The invention also encompasses pharmaceutical compositions comprising such modified diabodies and a second therapeutic antibody that is specific for a particular disease antigen, and a pharmaceutically acceptable carrier.
(276) As used herein, the terms “treatment” or “treating” denote an approach for obtaining a beneficial or desired result including and preferably a beneficial or desired clinical result. Such beneficial or desired clinical results include, but are not limited to, one or more of the following: reducing the proliferation of (or destroying) infected cells or other diseased cells, decreasing symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, delaying the progression of the disease, and/or prolonging survival of companion animal recipients.
(277) In a specific embodiment, the term “pharmaceutically acceptable” means approved by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more particularly in humans (see, e.g., R
(278) Generally, the ingredients of compositions of the invention are supplied either separately or mixed together in unit dosage form, for example, as a dry lyophilized powder or water free concentrate in a hermetically sealed container such as an ampoule or sachette indicating the quantity of active agent. Where the composition is to be administered by infusion, it can be dispensed with an infusion bottle containing sterile pharmaceutical grade water or saline. Where the composition is administered by injection, an ampoule of sterile water for injection or saline can be provided so that the ingredients may be mixed prior to administration.
(279) The compositions of the invention can be formulated as neutral or salt forms. Pharmaceutically acceptable salts include, but are not limited to those formed with anions such as those derived from hydrochloric, phosphoric, acetic, oxalic, tartaric acids, etc., and those formed with cations such as those derived from sodium, potassium, ammonium, calcium, ferric hydroxides, isopropylamine, triethylamine, 2-ethylamino ethanol, histidine, procaine, etc.
(280) The invention also provides a pharmaceutical pack or kit comprising one or more containers containing a modified diabody of the present invention, alone or with such pharmaceutically acceptable carrier. Additionally, one or more other prophylactic or therapeutic agents useful for the treatment of a disease can also be included in the pharmaceutical pack or kit. The invention also provides a pharmaceutical pack or kit comprising one or more containers filled with one or more of the ingredients of the pharmaceutical compositions of the invention. Optionally associated with such container(s) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceuticals or biological products, which notice reflects approval by the agency of manufacture, use or sale for human administration.
(281) The present invention provides kits that can be used in the above methods. In one embodiment, a kit comprises one or more molecules of the invention. In another embodiment, a kit further comprises one or more other prophylactic or therapeutic agents useful for the treatment of cancer or a disease characterized by the presence of a Disease-Associated Antigen, in one or more containers. In another embodiment, a kit further comprises one or more antibodies or diabodies that bind one or more Disease-Associated Antigens. In certain embodiments, the other prophylactic or therapeutic agent is a chemotherapeutic. In other embodiments, the prophylactic or therapeutic agent is a biological or hormonal therapeutic.
(282) VII. Methods of Producing the Tri-Specific Binding Molecules of the Present Invention
(283) The Tri-Specific Tri-Specific Binding Molecules of the present invention are most preferably produced through the recombinant expression of nucleic acid molecules that encode such polypeptides, as is well-known in the art.
(284) Polypeptides of the invention may be conveniently prepared using solid-phase peptide synthesis (Merrifield, B. (1986) “Solid Phase Synthesis,” Science 232(4748):341-347; Houghten, R. A. (1985) “General Method For The Rapid Solid-Phase Synthesis Of Large Numbers Of Peptides: Specificity Of Antigen-Antibody Interaction At The Level Of Individual Amino Acids,” Proc. Natl. Acad. Sci. (U.S.A.) 82(15):5131-5135; Ganesan, A. (2006) “Solid-Phase Synthesis In The Twenty-First Century,” Mini Rev. Med. Chem. 6(1):3-10).
(285) In an alternative, antibodies may be made recombinantly and expressed using any method known in the art. Antibodies may be made recombinantly by first isolating the antibodies made from host animals, obtaining the gene sequence, and using the gene sequence to express the antibody recombinantly in host cells (e.g., CHO cells). Another method that may be employed is to express the antibody sequence in plants (e.g., tobacco) or transgenic milk. Suitable methods for expressing antibodies recombinantly in plants or milk have been disclosed (see, for example, Peeters et al. (2001) “Production Of Antibodies And Antibody Fragments In Plants,” Vaccine 19:2756; Lonberg, N. et al. (1995) “Human Antibodies From Transgenic Mice,” Int. Rev. Immunol 13:65-93; and Pollock et al. (1999) “Transgenic Milk As A Method For The Production Of Recombinant Antibodies,” J. Immunol Methods 231:147-157). Suitable methods for making derivatives of antibodies, e.g., chimeric, humanized, single-chain, etc. are known in the art. In another alternative, antibodies may be made recombinantly by phage display technology (see, for example, U.S. Pat. Nos. 5,565,332; 5,580,717; 5,733,743; 6,265,150; and Winter, G. et al. (1994) “Making Antibodies By Phage Display Technology,” Annu. Rev. Immunol. 12.433-455).
(286) The antibodies or protein of interest may be subjected to sequencing by Edman degradation, which is well-known to those of skill in the art. The peptide information generated from mass spectrometry or Edman degradation can be used to design probes or primers that are used to clone the protein of interest.
(287) An alternative method of cloning the protein of interest is by “panning” using purified proteins or portions thereof for cells expressing the antibody or protein of interest. The “panning” procedure may be conducted by obtaining a cDNA library from tissues or cells that express or over-express the desired cDNAs in a second cell type, and screening the transfected cells of the second cell type for a specific binding to the desired protein. Detailed descriptions of the methods used in cloning mammalian genes coding for cell-surface proteins by “panning” can be found in the art (see, for example, Aruffo, A. et al. (1987) “Molecular Cloning Of A CD28 cDNA By A High-Efficiency COS Cell Expression System,” Proc. Natl. Acad. Sci. (U.S.A.) 84:8573-8577 and Stephan, J. et al. (1999) “Selective Cloning Of Cell Surface Proteins Involved In Organ Development: Epithelial Glycoprotein Is Involved In Normal Epithelial Differentiation,” Endocrinol. 140:5841-5854).
(288) cDNAs encoding antibodies, and other peptide agonists, antagonists and modulators can be obtained by reverse transcribing the mRNAs from a particular cell type according to standard methods in the art. Specifically, mRNA can be isolated using various lytic enzymes or chemical solutions according to the procedures set forth in Sambrook et al. supra or extracted by commercially available nucleic-acid-binding resins following the accompanying instructions provided by manufacturers (e.g., Qiagen, Invitrogen, Promega). The synthesized cDNAs are then introduced into an expression vector to produce the antibody or protein of interest in cells of a second type. It is implied that an expression vector must be replicable in the host cells either as episomes or as an integral part of the chromosomal DNA. Suitable expression vectors include but are not limited to plasmids, viral vectors, including adenoviruses, adeno-associated viruses, retroviruses, and cosmids.
(289) The vectors containing the polynucleotides of interest can be introduced into the host cell by any of a number of appropriate means, including electroporation, transfection employing calcium chloride, rubidium chloride, calcium phosphate, DEAE-dextran, or other substances; microprojectile bombardment; lipofection; and infection (e.g., where the vector is an infectious agent such as vaccinia virus). The choice of introducing vectors or polynucleotides will often depend on features of the host cell.
(290) Any host cells capable of over-expressing heterologous DNAs can be used for the purpose of isolating the genes encoding the antibody, polypeptide or protein of interest. Non-limiting examples of suitable mammalian host cells include but are not limited to COS, HeLa, and CHO cells. Preferably, the host cells express the cDNAs at a level of about 5-fold higher, more preferably 10-fold higher, more preferably 20-fold higher, more preferably 50-fold higher, more preferably 100-fold higher than that of the corresponding endogenous antibody or protein of interest, if present, in the host cells. Screening the host cells for a specific binding to a desired protein is preferably effected by an immunoassay or FACS. A cell over-expressing the antibody or protein of interest can be identified in this way.
(291) Various techniques are also available which may now be employed to produce mutant peptide agonists, antagonists, and modulators which encodes for additions, deletions, or changes in amino acid sequence of the resultant protein relative to the parent peptide agonist, antagonist or modulator molecule.
(292) The invention includes modifications to the Tri-Specific Binding Molecules of the invention that do not significantly affect their properties and variants that have enhanced or decreased activity. Modification of polypeptides is routine practice in the art. Examples of modified polypeptides include polypeptides with conservative substitutions of amino acid residues, one or more deletions or additions of amino acids which do not significantly deleteriously change the functional activity, or use of chemical analogs. Amino acid residues which can be conservatively substituted for one another include but are not limited to: glycine/alanine; valine/isoleucine/leucine; asparagine/glutamine; aspartic acid/glutamic acid; serine/threonine; lysine/arginine; and phenylalanine/tyrosine. These polypeptides also include glycosylated and non-glycosylated polypeptides, as well as polypeptides with other post translational modifications, such as, for example, glycosylation with different sugars, acetylation, and phosphorylation. Preferably, the amino acid substitutions would be conservative, i.e., the substituted amino acid would possess similar chemical properties as that of the original amino acid. Such conservative substitutions are known in the art, and examples have been provided above. Amino acid modifications can range from changing or modifying one or more amino acids to complete redesign of a region, such as the Variable Domain. Changes in the Variable Domain can alter binding affinity and/or specificity. Other methods of modification include using coupling techniques known in the art, including, but not limited to, enzymatic means, oxidative substitution and chelation. Modifications can be used, for example, for attachment of labels for immunoassay, such as the attachment of radioactive moieties for radioimmunoassay. Modified polypeptides are made using established procedures in the art and can be screened using standard assays known in the art.
(293) The invention also encompasses fusion proteins comprising one or more fragments or regions from the polypeptides and antibodies of this invention. In one embodiment, a fusion polypeptide is provided that comprises at least 10 contiguous amino acids of variable Light Chain region and at least 10 amino acids of variable heavy chain region. In another embodiment, the fusion polypeptide contains a heterologous immunoglobulin constant region. In another embodiment, the fusion polypeptide contains a Light Chain Variable Domain and a Heavy Chain Variable Domain of an antibody produced from a publicly-deposited hybridoma. For purposes of this invention, an antibody fusion protein contains one or more polypeptide Domains that specifically bind to a desired viral epitope or a desired activating receptor of an immune effector cell or a protein present on the surface of an immune effector cell that expresses such an activating receptor and another amino acid sequence to which it is not attached in the native molecule, for example, a heterologous sequence or a homologous sequence from another region.
(294) The invention includes polypeptides comprising an amino acid sequence of the antibodies of this invention. The polypeptides of this invention can be made by procedures known in the art. The polypeptides can be produced by proteolytic or other degradation of the antibodies, by recombinant methods (i.e., single or fusion polypeptides) as described above or by chemical synthesis. Polypeptides of the antibodies, especially shorter polypeptides up to about 50 amino acids, are conveniently made by chemical synthesis. Methods of chemical synthesis are known in the art and are commercially available. For example, such a polypeptide could be produced by an automated polypeptide synthesizer employing the solid-phase method.
(295) VIII. Uses of the Compositions of the Invention
(296) The present invention encompasses compositions, including pharmaceutical compositions, comprising the Tri-Specific Binding Molecules of the invention, polypeptides derived from such molecules, polynucleotides comprising sequences encoding such molecules or polypeptides, and other agents as described herein.
(297) The Tri-Specific Binding Molecules of the present invention have the ability to coordinately bind to three epitopes, and thus have substantial use in diagnostics, chemical separation, and therapeutics involving such epitopes. For example, such molecules may be used as a reagent in a sandwich immunoassay.
(298) In the embodiment in which such Tri-Specific Binding Molecules bind to an epitope of a Disease-Associated Antigen, such molecules may be used to treat the disease or condition associated with or characterized by the expression of such Disease-Associated Antigen. Thus, without limitation, pharmaceutical compositions comprising such molecules may be employed in the diagnosis or treatment of cancer, and diseases caused by a pathogen (e.g., bacterial, fungal, viral or protozoan) infection.
(299) IX. Methods of Administration
(300) The compositions of the present invention may be provided for the treatment, prophylaxis, and amelioration of one or more symptoms associated with a disease, disorder or infection by administering to a subject an effective amount of a pharmaceutical composition of the invention. In a preferred aspect, such compositions are substantially purified (i.e., substantially free from substances that limit its effect or produce undesired side-effects). In a specific embodiment, the subject is an animal, preferably a mammal such as non-primate (e.g., bovine, equine, feline, canine, rodent, etc.) or a primate (e.g., monkey such as, a cynomolgus monkey, human, etc.). In a preferred embodiment, the subject is a human.
(301) Various delivery systems are known and can be used to administer the compositions of the invention, e.g., encapsulation in liposomes, microparticles, microcapsules, recombinant cells capable of expressing the antibody or fusion protein, receptor-mediated endocytosis (See, e.g., Wu et al. (1987) “Receptor-Mediated In Vitro Gene Transformation By A Soluble DNA Carrier System,” J. Biol. Chem. 262:4429-4432), construction of a nucleic acid as part of a retroviral or other vector, etc.
(302) Methods of administering the Tri-Specific Binding Molecules of the present invention include, but are not limited to, parenteral administration (e.g., intradermal, intramuscular, intraperitoneal, intravenous and subcutaneous), epidural, and mucosal (e.g., intranasal and oral routes). In a specific embodiment, the molecules of the invention are administered intramuscularly, intravenously, or subcutaneously. The compositions may be administered by any convenient route, for example, by infusion or bolus injection, by absorption through epithelial or mucocutaneous linings (e.g., oral mucosa, rectal and intestinal mucosa, etc.) and may be administered together with other biologically active agents. Administration can be systemic or local. In addition, pulmonary administration can also be employed, e.g., by use of an inhaler or nebulizer, and formulation with an aerosolizing agent. See, e.g., U.S. Pat. Nos. 6,019,968; 5,985,320; 5,985,309; 5,934,272; 5,874,064; 5,855,913; 5,290,540; and 4,880,078; and PCT Publication Nos. WO 92/19244; WO 97/32572; WO 97/44013; WO 98/31346; and WO 99/66903, each of which is incorporated herein by reference in its entirety.
(303) The invention also provides that the Tri-Specific Binding Molecules of the present invention may be packaged in a hermetically sealed container such as an ampoule or sachette indicating the quantity of such molecules. In one embodiment, the Tri-Specific Binding Molecules of the present invention are supplied as a dry sterilized lyophilized powder or water free concentrate in a hermetically sealed container and can be reconstituted, e.g., with water or saline to the appropriate concentration for administration to a subject. Preferably, the Tri-Specific Binding Molecules of the present invention are supplied as a dry sterile lyophilized powder in a hermetically sealed container at a unit dosage of at least 5 μg, more preferably at least 10 μg, at least 15 μg, at least 25 μg, at least 50 μg, at least 100 μg, or at least 200 μg.
(304) The lyophilized Tri-Specific Binding Molecules of the present invention should be stored at between 2 and 8° C. in their original container and the molecules should be administered within 12 hours, preferably within 6 hours, within 5 hours, within 3 hours, or within 1 hour after being reconstituted. In an alternative embodiment, the Tri-Specific Binding Molecules of the present invention are supplied in liquid form in a hermetically sealed container indicating the quantity and concentration of the molecule, fusion protein, or conjugated molecule. Preferably, the liquid form of the Tri-Specific Binding Molecules of the present invention is supplied in a hermetically sealed container in which the molecules are present at a concentration of least 1 μg/ml, more preferably at least 2.5 μg/ml, at least 5 μg/ml, at least 10 μg/ml, at least 50 μg/ml, or at least 100 μg/ml.
(305) As used herein, an “effective amount” of a pharmaceutical composition, in one embodiment, is an amount sufficient to effect beneficial or desired results including, without limitation, clinical results such as decreasing symptoms resulting from the disease attenuating a symptom of infection (e.g., viral load, fever, pain, sepsis, etc.) or a symptom of cancer (e.g., the proliferation, of cancer cells, tumor presence, tumor metastases, etc.), thereby increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, enhancing the effect of another medication such as via targeting and/or internalization, delaying the progression of the disease, and/or prolonging survival of individuals.
(306) An effective amount can be administered in one or more administrations. For purposes of this invention, an effective amount of drug, compound, or pharmaceutical composition is an amount sufficient to reduce the proliferation of (or the effect of) viral presence and to reduce and/or delay the development of the viral disease, either directly or indirectly. In some embodiments, an effective amount of a drug, compound, or pharmaceutical composition may or may not be achieved in conjunction with another drug, compound, or pharmaceutical composition. Thus, an “effective amount” may be considered in the context of administering one or more chemotherapeutic agents, and a single agent may be considered to be given in an effective amount if, in conjunction with one or more other agents, a desirable result may be or is achieved. While individual needs vary, determination of optimal ranges of effective amounts of each component is within the skill of the art. Typical dosages for antibody administration comprise one or more unit doses between 0.1-to 100 mg/kg/body weight.
(307) The amount of the Tri-Specific Binding Molecule of the present invention which will be effective in the treatment, prevention or amelioration of one or more symptoms associated with a disorder can be determined by standard clinical techniques. The precise dose to be employed in the formulation will also depend on the route of administration, and the seriousness of the condition, and should be decided according to the judgment of the practitioner and each patient's circumstances. Effective doses may be extrapolated from dose-response curves derived from in vitro or animal model test systems. For the Tri-Specific Binding Molecules of the present invention, the dosage administered to a patient is typically at least about 0.01 μg/kg/day, at least about 0.05 μg/kg/day, at least about 0.1 μg/kg/day, at least about 0.2 μg/kg/day, at least about 0.5 μg/kg/day, at least about 1 μg/kg/day, at least about 2 μg/kg/day, at least about 5 μg/kg/day, at least about 10 μg/kg/day, at least about 20 μg/kg/day, at least about 50 μg/kg/day, at least about 0.1 mg/kg/day, or more of the subject's body weight
(308) Preferably, the dosage administered to a patient is between about 0.01 μg/kg/day and about 0.1 mg/kg/day, more preferably, between about 0.01 μg/kg/day and about 50 μg/kg/day, more preferably, between about 0.01 μg/kg/day and about 50 μg/kg/day, more preferably, between about 0.01 μg/kg/day and about 10 μg/kg/day, more preferably, between about 0.01 μg/kg/day and about 1 μg/kg/day, more preferably, between about 0.01 μg/kg/day and about 0.5 μg/kg/day, and more preferably, between about 0.01 μg/kg/day and about 0.1 μg/kg/day of the subject's body weight. The dosage and frequency of administration of the Tri-Specific Binding Molecules of the invention may be reduced or altered by enhancing uptake and tissue penetration of the Tri-Specific Binding Molecules by modifications such as, for example, lipidation.
(309) In another embodiment, the patient is administered a treatment regimen comprising one or more doses of such prophylactically or therapeutically effective amount of the Tri-Specific Binding Molecules encompassed by the invention, wherein the treatment regimen is administered over 2 days, 3 days, 4 days, 5 days, 6 days or 7 days. In certain embodiments, the treatment regimen comprises intermittently administering doses of the prophylactically or therapeutically effective amount of the Tri-Specific Binding Molecules encompassed by the invention (for example, administering a dose on day 1, day 2, day 3 and day 4 of a given week and not administering doses of the prophylactically or therapeutically effective amount of the Tri-Specific Binding Molecules encompassed by the invention on day 5, day 6 and day 7 of the same week). Typically, there are 1, 2, 3, 4, 5, or more courses of treatment. Each course may be the same regimen or a different regimen.
(310) In another embodiment, the administered dose escalates over the first quarter, first half or first two-thirds or three-quarters of the regimen(s) (e.g., over the first, second, or third regimens of a 4 course treatment) until the daily prophylactically or therapeutically effective amount of the Tri-Specific Binding Molecules encompassed by the invention is achieved.
(311) In one embodiment, the dosage of the Tri-Specific Binding Molecules of the present invention administered to a patient may be calculated for use as a single agent therapy. In another embodiment the Tri-Specific Binding Molecules of the present invention are used in combination with other therapeutic compositions and the dosage administered to a patient are lower than when such Tri-Specific Binding Molecules are used as a single agent therapy.
(312) In a specific embodiment, it may be desirable to administer the pharmaceutical compositions of the invention locally to the area in need of treatment; this may be achieved by, for example, and not by way of limitation, local infusion, by injection, or by means of an implant, said implant being of a porous, non-porous, or gelatinous material, including membranes, such as sialastic membranes, or fibers. Preferably, when administering a molecule of the invention, care must be taken to use materials to which the molecule does not absorb.
(313) In another embodiment, the compositions can be delivered in a vesicle, in particular a liposome (See Langer (1990) “New Methods Of Drug Delivery,” Science 249:1527-1533); Treat et al., in Liposomes in the Therapy of Infectious Disease and Cancer, Lopez-Berestein and Fidler (eds.), Liss, New York, pp. 353-365 (1989); Lopez-Berestein, ibid., pp. 317-327; see generally ibid.).
(314) In yet another embodiment, the compositions can be delivered in a controlled release or sustained release system. Any technique known to one of skill in the art can be used to produce sustained release formulations comprising one or more molecules of the invention. See, e.g., U.S. Pat. No. 4,526,938; PCT publication WO 91/05548; PCT publication WO 96/20698; Ning et al. (1996) “Intratumoral Radioimmunotheraphy Of A Human Colon Cancer Xenograft Using A Sustained-Release Gel,” Radiotherapy & Oncology 39:179-189, Song et al. (1995) “Antibody Mediated Lung Targeting Of Long-Circulating Emulsions,” PDA Journal of Pharmaceutical Science & Technology 50:372-397; Cleek et al. (1997) “Biodegradable Polymeric Carriers For A bFGF Antibody For Cardiovascular Application,” Pro. Int'l. Symp. Control. Rel. Bioact. Mater. 24:853-854; and Lam et al. (1997) “Microencapsulation Of Recombinant Humanized Monoclonal Antibody For Local Delivery,” Proc. Int'l. Symp. Control Rel. Bioact. Mater. 24:759-760, each of which is incorporated herein by reference in its entirety. In one embodiment, a pump may be used in a controlled release system (See Langer, supra; Sefton, (1987) “Implantable Pumps,” CRC Crit. Rev. Biomed. Eng. 14:201-240; Buchwald et al. (1980) “Long-Term, Continuous Intravenous Heparin Administration By An Implantable Infusion Pump In Ambulatory Patients With Recurrent Venous Thrombosis,” Surgery 88:507-516; and Saudek et al. (1989) “A Preliminary Trial Of The Programmable Implantable Medication System For Insulin Delivery,” N. Engl. J. Med. 321:574-579). In another embodiment, polymeric materials can be used to achieve controlled release of antibodies (see e.g., M
(315) Controlled release systems are discussed in the review by Langer (1990, “New Methods Of Drug Delivery,” Science 249:1527-1533). Any technique known to one of skill in the art can be used to produce sustained release formulations comprising one or more therapeutic agents of the invention. See, e.g., U.S. Pat. No. 4,526,938; International Publication Nos. WO 91/05548 and WO 96/20698; Ning et al. (1996) “Intratumoral Radioimmunotheraphy Of A Human Colon Cancer Xenograft Using A Sustained-Release Gel,” Radiotherapy & Oncology 39:179-189, Song et al. (1995) “Antibody Mediated Lung Targeting Of Long-Circulating Emulsions,” PDA Journal of Pharmaceutical Science & Technology 50:372-397; Cleek et al. (1997) “Biodegradable Polymeric Carriers For A bFGF Antibody For Cardiovascular Application,” Pro. Int'l. Symp. Control. Rel. Bioact. Mater. 24:853-854; and Lam et al. (1997) “Microencapsulation Of Recombinant Humanized Monoclonal Antibody For Local Delivery,” Proc. Int'l. Symp. Control Rel. Bioact. Mater. 24:759-760, each of which is incorporated herein by reference in its entirety.
(316) In a specific embodiment where the composition of the invention is a nucleic acid encoding a Tri-Specific Binding Molecule of the present invention, the nucleic acid can be administered in vivo to promote expression of its encoded Tri-Specific Binding Molecule, by constructing it as part of an appropriate nucleic acid expression vector and administering it so that it becomes intracellular, e.g., by use of a retroviral vector (See U.S. Pat. No. 4,980,286), or by direct injection, or by use of microparticle bombardment (e.g., a gene gun; Biolistic, Dupont), or coating with lipids or cell-surface receptors or transfecting agents, or by administering it in linkage to a homeobox-like peptide which is known to enter the nucleus (See e.g., Joliot et al. (1991) “Antennapedia Homeobox Peptide Regulates Neural Morphogenesis,” Proc. Natl. Acad. Sci. (U.S.A.) 88:1864-1868), etc. Alternatively, anucleic acid can be introduced intracellularly and incorporated within host cell DNA for expression by homologous recombination.
(317) Treatment of a subject with a therapeutically or prophylactically effective amount of the Tri-Specific Binding Molecules of the present invention can include a single treatment or, preferably, can include a series of treatments. In a preferred example, a subject is treated with molecules of the invention one time per week for between about 1 to 10 weeks, preferably between 2 to 8 weeks, more preferably between about 3 to 7 weeks, and even more preferably for about 4, 5, or 6 weeks. In other embodiments, the pharmaceutical compositions of the invention are administered once a day, twice a day, or three times a day. In other embodiments, the pharmaceutical compositions are administered once a week, twice a week, once every two weeks, once a month, once every six weeks, once every two months, twice a year or once per year. It will also be appreciated that the effective dosage of the molecules used for treatment may increase or decrease over the course of a particular treatment.
(318) Having now generally described the invention, the same will be more readily understood through reference to the following Examples. Such Examples are provided by way of illustration and are not intended to be limiting of the present invention unless specified.
Example 1
Production and Properties of Exemplary Anti-CD3, Anti-CD8, Anti-B7-H3 Tri-Specific Binding Molecules
(319) In order to develop a therapeutic molecule that would exhibit greater specificity to CD8+ T cells, and more potent re-directed killing, Tri-Specific Binding Molecules were constructed having the ability to coordinately bind to CD3, to CD8 and to a Disease-Associated Antigen. The produced Tri-Specific Binding Molecule additionally possessed an Fc Domain to enhance the half-life of the Tri-Specific Binding Molecule in vivo. The general structures of the Tri-Specific Binding Molecules are shown in
(320) TABLE-US-00060 TABLE 5 Poly- peptide Chain Domains Binding Affinity 1 VL(B7-H3 mAb 1)- Light Chain: VH(CD3 mAb 2)- B7-H3 E-Coil-(CH2—CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)- Light Chain: CD3 VH(B7-H3 mAb 1)- Heavy Chain: K-Coil B7-H3 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(321) The amino acid sequence of the first polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:59):
(322) TABLE-US-00061 DIQMTQSPSS LSASVGDRVT ITCRASQDIS NYLNWYQQKP GKAPKLLIYY TSRLHSGVPS RFSGSGSGTD FTLTISSLQP EDIATYYCQQ GNTLPPTFGG GTKLEIKGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKDRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHGNFG NSYVSWFAYW GQGTLVTVSS GGCGGGEVAA LEKEVAALEK EVAALEKEVA ALEKGGGDKT HTCPPCPAPE AAGGPSVFLF PPKPKDTLMI SRTPEVTCVV VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE KTISKAKGQP REPQVYTLPP SREEMTKNQV SLWCLVKGFY PSDIAVEWES NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL SPGK
(323) In the first polypeptide chain, VL(B7-H3 mAb 1) has the amino acid sequence of SEQ ID NO:41, VH(CD3 mAb 2) has the amino acid sequence of SEQ ID NO:27, E-coil has the amino acid sequence of SEQ ID NO:3 and (CH2-CH3) has the amino acid sequence of the “knob-bearing” amino acid sequence of SEQ ID NO:7.
(324) The amino acid sequence of the second polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:60):
(325) TABLE-US-00062 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGAEVK KPGASVKVSC KASGYTFTSY WMQWVRQAPG QGLEWMGTIY PGDGDTRYTQ KFKGRVTITA DKSTSTAYME LSSLRSEDTA VYYCARRGIP RLWYFDVWGQ GTTVTVSSGG CGGGKVAALK EKVAALKEKV AALKEKVAAL KE
(326) In the second polypeptide chain, VL(CD3 mAb 2) has the amino acid sequence of SEQ ID NO:26, VH(B7-H3 mAb 1) has the amino acid sequence of SEQ ID NO:42, and K-coil has the amino acid sequence of SEQ ID NO:4.
(327) The amino acid sequence of the third polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:61):
(328) TABLE-US-00063 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPGK
(329) In the third polypeptide chain, the amino acid sequence of the employed CD8 mAb 1 Heavy Chain Variable Domain has the amino acid sequence of SEQ ID NO:30, a Hinge Domain, a CH1 Domain and the “hole-bearing” CH2-CH3 Domain with an H435R substitution to remove the Protein A binding site (SEQ ID NO:8).
(330) The amino acid sequence of the fourth polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:62):
(331) TABLE-US-00064 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(332) In the fourth polypeptide chain, the amino acid sequence of the employed CD8 mAb 1 Light Chain Variable Domain has the amino acid sequence of SEQ ID NO:29 and a kappa Light Chain Constant Domain.
(333) The expressed B7H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was loaded onto an MSA resin, washed with 10 mM NaPO.sub.4 (pH6); 10 mM NaPO.sub.4, 1M NaCl (pH6) and 10 mM NaPO.sub.4 (pH6). Polypeptides were eluted from the resin with 50 mM glycine (pH3) and neutralized with 1M Tris (pH8). Expression was found to be 1.7 mg/L; the Tri-Specific Binding Molecule preparation was 0.6 mg/ml, having a final yield of 0.42 mg.
(334) The properties of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule were compared with those of a B7-H3×CD3 DART and a B7-H3×CD3 DART with an Fc Domain. As shown in
(335) In order to demonstrate the ability of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecules of the present invention to mediate the re-directed killing of target cells, such molecules were incubated in the presence of T cells and either JIMT-1 or A498 target cells. JIMT-1 cells are a trastuzumab-resistant carcinoma line (Tanner, M. et al. (2004) “Characterization Of A Novel Cell Line Established From A Patient With Herceptin-Resistant Breast Cancer,” Mol. Cancer Ther. 3(12):1585-1592). The A498 cell line is a renal cell carcinoma cell line (Gogh, J. (1978) “Cultivation, Characterization, And Identification Of Human Tumor Cells With Emphasis On Kidney, Testis, And Bladder Tumors,” Natl. Cancer Inst. Monogr. 49:5-9). As shown in
(336) TABLE-US-00065 TABLE 6 Re-Directed Killing JIMT-1 Cells A498 Cells LDH Luci- LDH Max LDH ferase Max LDH Binding Molecule Killing EC50 EC50 Killing EC50 Assay (%) (pM) (pM) (%) (pM) B7-H3 X CD3 DART ™ 60.72 27 22 61.95 11 B7-H3 X CD3 DART ™ 59.95 343 245 63.2 168 with Fc Domain B7-H3 mAb 1/CD3 54.88 0.4 0.6 53.5 4 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule
(337)
(338) TABLE-US-00066 TABLE 7 EC50 Values of B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule Compared to DARTs Tri-Specific Tumor T Cell DART ™ with Binding Cells Subset DART ™ Fc Domain Molecule A498 CD4/CD69 51 95 75 CD4/CD25 75 291 22 CD8/CD69 70 185 4 CD8/CD25 115 339 4 CTL 10 48 4 JIMT-1 CD4/CD69 116 339 253 CD4/CD25 257 1034 185 CD8/CD69 70 185 3 CD8/CD25 140 678 37 CTL 7 68 1
(339) The expressed B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule exhibited much greater (13-fold) cytolytic activity using CD8+ effector cells compared to CD4+ effector cells. The B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule also exhibited greatly increased (85-fold) overall potency using ‘pan’ T cells as effectors compared to the DART™.
Example 2
Effect of CD8 Binding Domain on Re-Directed Cytotoxicity
(340) In order to assess the effect of CD8 specificity, a second Tri-Specific Binding Molecule specific for the Disease-Associated Antigen B7-H3 was constructed utilizing a different CD8 antibody Variable Domain sequence. The B7-H3 Variable Domain specificities and CD3 Variable Domain specificities were identical to those used to construct the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule. The Tri-Specific Binding Molecule is termed B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 and was composed of four different polypeptide chains (Table 8).
(341) TABLE-US-00067 TABLE 8 Polypeptide Chain Domains Binding Affinity 1 VL(B7-H3 mAb 1)-VH(CD3 Light Chain: B7-H3 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(B7-H3 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: B7-H3 3 Heavy Chain CD8 mAb 2 CD8 4 Light Chain CD8 mAb 2 CD8
(342) The amino acid sequence of the first polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:63):
(343) TABLE-US-00068 DIQMTQSPSS LSASVGDRVT ITCRASQDIS NYLNWYQQKP GKAPKLLIYY TSRLHSGVPS RFSGSGSGTD FTLTISSLQP EDIATYYCQQ GNTLPPTFGG GTKLEIKGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKDRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHGNFG NSYVSWFAYW GQGTLVTVSS GGCGGGEVAA LEKEVAALEK EVAALEKEVA ALEKGGGDKT HTCPPCPAPE AAGGPSVFLF PPKPKDTLMI SRTPEVTCVV VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE KTISKAKGQP REPQVYTLPP SREEMTKNQV SLWCLVKGFY PSDIAVEWES NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL SPGK
(344) The amino acid sequence of the second polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:64):
(345) TABLE-US-00069 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGAEVK KPGASVKVSC KASGYTFTSY WMQWVRQAPG QGLEWMGTIY PGDGDTRYTQ KFKGRVTITA DKSTSTAYME LSSLRSEDTA VYYCARRGIP RLWYFDVWGQ GTTVTVSSGG CGGGKVAALK EKVAALKEKV AALKEKVAAL KE
(346) The amino acid sequence of the third polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:65):
(347) TABLE-US-00070 QVQLVESGGG VVQPGRSLRL SCAASGFTFS DFGMNWVRQA PGKGLEWVAL IYYDGSNKFY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCAKPH YDGYYHFFDS WGQGTLVTVS SASTKGPSVF PLAPSSKSTS GGTAALGCLV KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ TYICNVNHKP SNTKVDKRVE PKSCDKTHTC PPCPAPEAAG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRE EMTKNQVSLS CAVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL VSKLTVDKSR WQQGNVFSCS VMHEALHNRY TQKSLSLSPG K
(348) The amino acid sequence of the fourth polypeptide chain of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:66):
(349) TABLE-US-00071 DIQMTQSPSS LSASVGDRVT ITCKGSQDIN NYLAWYQQKP GKAPKLLIYN TDILHTGVPS RFSGSGSGTD FTFTISSLQP EDIATYYCYQ YNNGYTFGQG TKVEIKRTVA APSVFIFPPS DEQLKSGTAS VVCLLNNFYP REAKVQWKVD NALQSGNSQE SVTEQDSKDS TYSLSSTLTL SKADYEKHKV YACEVTHQGL SSPVTKSFNR GEC
(350) To compare the ability of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 (construction and sequence described above) or B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules to bind T cells, human PBMC of healthy donors were purified with Ficoll, wash twice with PBS and re-suspended in FACS buffer contained 10% Human AB serum and incubate at room temperature for 20 minutes, spin down the cell and re-suspended 4×10.sup.6 cells/mL cells in FACS buffer. 50 μl of serial titrated B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 or B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules or DART™ (B7-H3×CD3 or B7-H3×CD3 with Fc Domain) were added to the wells of a 96-well deep plate. 50 μL (4×10.sup.6 cells/mL) of well-mixed cells in FACS buffer containing 0.01% sodium azide were then added into corresponding wells and mixed thoroughly using a pipette. The plate was incubated in the dark for about 45 minutes at 2-8° C. At the end of the incubation, the cells were washed twice by adding 300 μL of FACS buffer to each well, centrifuging the plate at 1,200 rpm for 5 minutes, and discarding the supernatant. The cell pellets were re-suspended in 100 μL mixture of PE-conjugated goat anti-Human Fcγ 1:500 diluted, CD5-APC and CD4-PerCP5.5 in FACS buffer containing 0.01% sodium azide, and incubated in the dark for about 45 minutes at 2-8° C. At the end of the incubation, the cells were washed, re-suspended with FACS buffer, and analyzed with a BD Caliber flow cytometer. Cells were gated to CD5.sup.+ CD4.sup.+ (
(351) The cytotoxicity of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was compared to that of the B7-H3 mAb1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule. Both a luciferase assay and an LDH assay were employed. The results of the two assays were in agreement. The two Tri-Specific Binding Molecules caused equivalent re-directed cytotoxicity in the presence of activating CD8+ T cell or pan T cell populations. The Tri-Specific Binding Molecule having a CD8 mAb 1 Binding Domain exhibited greater re-directed cytotoxicity in the presence of CD8+ cell populations or pan T cells compared to the B7H3×CD3 DART (
(352) An increase (60-fold) in EC50 for CD8+ vs. CD4+ effector cells was also observed for the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule compared to the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule. For the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule, increased potency resulting in a decrease in the EC50 of greater that 100-fold was observed when pan T cells were used as effector cells.
Example 3
Effect of Domain Positions on Re-Directed Cytotoxicity
(353) In order to assess the effect of position for a given Binding Domain (CD3, CD8 and Disease-Associate Antigen) within the Tri-Specific Binding Molecule (Site A, Site B and Site C), several additional Tri-Specific Binding Molecules were constructed. Table 9 shows the Tri-Specific Binding Molecules and the location (Site A, Site B and Site C) of the various Binding Domains (CD3, CD8 and Disease-Associated Antigen).
(354) TABLE-US-00072 TABLE 9 Tri-Specific Binding Molecule Site A Site B Site C B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 B7-H3 CD3 CD8 Tri-Specific Binding Molecule mAb 1 mAb 2 mAb 1 CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 CD3 CD8 B7-H3 Tri-Specific Binding Molecule mAb 2 mAb 1 mAb 1 B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 B7-H3 CD8 CD3 Tri-Specific Binding Molecule mAb 1 mAb 1 mAb 2
(355) The construction and sequence of the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was described above. For the additional two Tri-Specific Binding Molecules (CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 and B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2), the B7-H3 Variable Domain specificities, CD3 Variable Domain specificities and CD8 Variable Domain specificities were identical to those used to construct the B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule. The CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 10).
(356) TABLE-US-00073 TABLE 10 Polypeptide Chain Domains Binding Affinity 1 VL(CD3 mAb 2)-VH(CD8 Light Chain: CD3 mAb 1)-E-Coil-(CH2-CH3) Heavy Chain: CD8 2 VL(CD8 mAb 1)-VH(CD3 Light Chain: CD8 mAb 2)-K-Coil Heavy Chain: CD3 3 Heavy Chain B7-H3 mAb 1 B7-H3 4 Light Chain B7-H3 mAb 1 B7-H3
(357) The amino acid sequence of the first polypeptide chain of the CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:67):
(358) TABLE-US-00074 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKGRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHGNFG NSYVSWFAYW GQGTLVTVSS GGCGGGEVAA LEKEVAALEK EVAALEKEVA ALEKGGGDKT HTCPPCPAPE AAGGPSVFLF PPKPKDTLMI SRTPEVTCVV VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE KTISKAKGQP REPQVYTLPP SREEMTKNQV SLWCLVKGFY PSDIAVEWES NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL SPGK
(359) The amino acid sequence of the second polypeptide chain of the CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:68):
(360) TABLE-US-00075 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGEV QLQQSGAELV KPGASVKLSC TASGFNIKDT YIHFVRQRPE QGLEWIGRID PANDNTLYAS KFQGKATITA DTSSNTAYMH LCSLTSGDTA VYYCGRGYGY YVFDHWGQGT TLTVSSGGCG GGKVAALKEK VAALKEKVAA LKEKVAALKE
(361) The amino acid sequence of the third polypeptide chain of the CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:69):
(362) TABLE-US-00076 QVQLVQSGAE VKKPGASVKV SCKASGYTFT SYWMQWVRQA PGQGLEWMGT IYPGDGDTRY TQKFKGRVTI TADKSTSTAY MELSSLRSED TAVYYCARRG IPRLWYFDVW GQGTTVTVSS ASTKGPSVFP LAPSSKSTSG GTAALGCLVK DYFPEPVTVS WNSGALTSGV HTFPAVLQSS GLYSLSSVVT VPSSSLGTQT YICNVNHKPS NTKVDKRVEP KSCDKTHTCP PCPAPEAAGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ VYTLPPSREE MTKNQVSLSC AVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLV SKLTVDKSRW QQGNVFSCSV MHEALHNRYT QKSLSLSPGK
(363) The amino acid sequence of the fourth polypeptide chain of the CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:70):
(364) TABLE-US-00077 DIQMTQSPSS LSASVGDRVT ITCRASQDIS NYLNWYQQKP GKAPKLLIYY TSRLHSGVPS RFSGSGSGTD FTLTISSLQP EDIATYYCQQ GNTLPPTFGG GTKLEIKRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(365) The B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 11).
(366) TABLE-US-00078 TABLE 11 Polypeptide Chain Domains Binding Affinity 1 VL(B7-H3 mAb 1)-VH(CD8 Light Chain: B7-H3 mAb 1)-E-Coil-(CH2-CH3) Heavy Chain: CD8 2 VL(CD8 mAb 1)-VH(B7-H3 Light Chain: CD8 mAb1)-K-Coil Heavy Chain: B7-H3 3 Heavy Chain CD3 mAb 2 CD3 4 Light Chain CD3 mAb 2 CD3
(367) The amino acid sequence of the first polypeptide chain of the B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:71):
(368) TABLE-US-00079 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRGGG SGGGGQVQLV QSGAEVKKPG ASVKVSCKAS GYTFTSYWMQ WVRQAPGQGL EWMGTIYPGD GDTRYTQKFK GRVTITADKS TSTAYMELSS LRSEDTAVYY CARRGIPRLW YFDVWGQGTT VTVSSGGCGG GEVAALEKEV AALEKEVAAL EKEVAALEKG GGDKTHTCPP CPAPEAAGGP SVFLFPPKPK DTLMISRTPE VTCVVVDVSH EDPEVKFNWY VDGVEVHNAK TKPREEQYNS TYRVVSVLTV LHQDWLNGKE YKCKVSNKAL PAPIEKTISK AKGQPREPQV YTLPPSREEM TKNQVSLWCL VKGFYPSDIA VEWESNGQPE NNYKTTPPVL DSDGSFFLYS KLTVDKSRWQ QGNVFSCSVM HEALHNHYTQ KSLSLSPGK
(369) The amino acid sequence of the second polypeptide chain of the B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:72):
(370) TABLE-US-00080 DIQMTQSPSS LSASVGDRVT ITCRASQDIS NYLNWYQQKP GKAPKLLIYY TSRLHSGVPS RFSGSGSGTD FTLTISSLQP EDIATYYCQQ GNTLPPTFGG GTKLEIKGGG SGGGGEVQLQ QSGAELVKPG ASVKLSCTAS GFNIKDTYIH FVRQRPEQGL EWIGRIDPAN DNTLYASKFQ GKATITADTS SNTAYMHLCS LTSGDTAVYY CGRGYGYYVF DHWGQGTTLT VSSGGCGGGK VAALKEKVAA LKEKVAALKE KVAALKE
(371) The amino acid sequence of the third polypeptide chain of the B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:73):
(372) TABLE-US-00081 EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKDRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVS WFAYWGQGTL VTVSSASTKG PSVFPLAPSS KSTSGGTAAL GCLVKDYFPE PVTVSWNSGA LTSGVHTFPA VLQSSGLYSL SSVVTVPSSS LGTQTYICNV NHKPSNTKVD KRVEPKSCDK THTCPPCPAP EAAGGPSVFL FPPKPKDTLM ISRTPEVTCV VVDVSHEDPE VKFNWYVDGV EVHNAKTKPR EEQYNSTYRV VSVLTVLHQD WLNGKEYKCK VSNKALPAPI EKTISKAKGQ PREPQVYTLP PSREEMTKNQ VSLSCAVKGF YPSDIAVEWE SNGQPENNYK TTPPVLDSDG SFFLVSKLTV DKSRWQQGNV FSCSVMHEAL HNRYTQKSLS LSPGK
(373) The amino acid sequence of the fourth polypeptide chain of the B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:74):
(374) TABLE-US-00082 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG RTVAAPSVFI FPPSDEQLKS GTASVVCLLN NFYPREAKVQ WKVDNALQSG NSQESVTEQD SKDSTYSLSS TLTLSKADYE KHKVYACEVT HQGLSSPVTK SFNRGEC
(375) The results of this investigation are shown in
(376) As shown in
Example 4
Production and Properties of Exemplary Anti-CD3, Anti-CD8, Anti-5T4 Tri-Specific Binding Molecules
(377) Additional exemplary Tri-Specific Binding Molecules specific for the Disease-Associated Antigen 5T4 were constructed. The 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 12).
(378) TABLE-US-00083 TABLE 12 Polypeptide Chain Domains Binding Affinity 1 VL(5T4 mAb 2)-VH(CD3 Light Chain: 5T4 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(5T4 Light Chain: CD3 mAb 2)-K-Coil Heavy Chain: 5T4 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(379) The amino acid sequence of the first polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:75):
(380) TABLE-US-00084 DVLMTQTPLS LPVSLGDQAS ISCRSSQSIV YSNGNTYLEW YLQKPGQSPK LLIYKVSNRF SGVPDRFSGS GSGTDFTLKI SRVEAEDLGV YYCFQGSHVP FTFGSGTKLE IKGGGSGGGG EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKGRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVS WFAYWGQGTL VTVSSGGCGG GEVAALEKEV AALEKEVAAL EKEVAALEKG GGDKTHTCPP CPAPEAAGGP SVFLFPPKPK DTLMISRTPE VTCVVVDVSH EDPEVKFNWY VDGVEVHNAK TKPREEQYNS TYRVVSVLTV LHQDWLNGKE YKCKVSNKAL PAPIEKTISK AKGQPREPQV YTLPPSREEM TKNQVSLWCL VKGFYPSDIA VEWESNGQPE NNYKTTPPVL DSDGSFFLYS KLTVDKSRWQ QGNVFSCSVM HEALHNHYTQ KSLSLSPGK
(381) The amino acid sequence of the second polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:76):
(382) TABLE-US-00085 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLQQPGAELV KPGASVKMSC KASGYTFTSY WITWVKQRPG QGLEWIGDIY PGSGRANYNE KFKSKATLTV DTSSSTAYMQ LSSLTSEDSA VYNCARYGPL FTTVVDPNSY AMDYWGQGTS VTVSSGGCGG GKVAALKEKV AALKEKVAAL KEKVAALKE
(383) The amino acid sequence of the third polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:77):
(384) TABLE-US-00086 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPGK
(385) The amino acid sequence of the fourth polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:78):
(386) TABLE-US-00087 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(387) The 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 13).
(388) TABLE-US-00088 TABLE 13 Polypeptide Chain Domains Binding Affinity 1 VL(5T4 mAb 2)-VH(CD3 Light Chain: 5T4 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(5T4 Light Chain: CD3 mAb 2)-K-Coil Heavy Chain: 5T4 3 Heavy Chain CD8 mAb 2 CD8 4 Light Chain CD8 mAb 2 CD8
(389) The amino acid sequence of the first polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:79):
(390) TABLE-US-00089 DVLMTQTPLS LPVSLGDQAS ISCRSSQSIV YSNGNTYLEW YLQKPGQSPK LLIYKVSNRF SGVPDRFSGS GSGTDFTLKI SRVEAEDLGV YYCFQGSHVP FTFGSGTKLE IKGGGSGGGG EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKGRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVS WFAYWGQGTL VTVSSGGCGG GEVAALEKEV AALEKEVAAL EKEVAALEKG GGDKTHTCPP CPAPEAAGGP SVFLFPPKPK DTLMISRTPE VTCVVVDVSH EDPEVKFNWY VDGVEVHNAK TKPREEQYNS TYRVVSVLTV LHQDWLNGKE YKCKVSNKAL PAPIEKTISK AKGQPREPQV YTLPPSREEM TKNQVSLWCL VKGFYPSDIA VEWESNGQPE NNYKTTPPVL DSDGSFFLYS KLTVDKSRWQ QGNVFSCSVM HEALHNHYTQ KSLSLSPGK
(391) The amino acid sequence of the second polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:80):
(392) TABLE-US-00090 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLQQPGAELV KPGASVKMSC KASGYTFTSY WITWVKQRPG QGLEWIGDIY PGSGRANYNE KFKSKATLTV DTSSSTAYMQ LSSLTSEDSA VYNCARYGPL FTTVVDPNSY AMDYWGQGTS VTVSSGGCGG GKVAALKEKV AALKEKVAAL KEKVAALKE
(393) The amino acid sequence of the third polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:81):
(394) TABLE-US-00091 QVQLVESGGG VVQPGRSLRL SCAASGFTFS DFGMNWVRQA PGKGLEWVAL IYYDGSNKFY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCAKPH YDGYYHFFDS WGQGTLVTVS SASTKGPSVF PLAPSSKSTS GGTAALGCLV KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ TYICNVNHKP SNTKVDKRVE PKSCDKTHTC PPCPAPEAAG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRE EMTKNQVSLS CAVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL VSKLTVDKSR WQQGNVFSCS VMHEALHNRY TQKSLSLSPG K
(395) The amino acid sequence of the fourth polypeptide chain of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:82):
(396) TABLE-US-00092 DIQMTQSPSS LSASVGDRVT ITCKGSQDIN NYLAWYQQKP GKAPKLLIYN TDILHTGVPS RFSGSGSGTD FTFTISSLQP EDIATYYCYQ YNNGYTFGQG TKVEIKRTVA APSVFIFPPS DEQLKSGTAS VVCLLNNFYP REAKVQWKVD NALQSGNSQE SVTEQDSKDS TYSLSSTLTL SKADYEKHKV YACEVTHQGL SSPVTKSFNR GEC
(397) The 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 and 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules were expressed and purified as described above. The ability of these two Tri-Specific Binding Molecules to bind to CD5+/CD4+ gated and CD5+/CD4− gated human PBMCs were compared to those of a 5T4×CD3 DART with an Fc Domain. As shown in
(398) In order to demonstrate the ability of the 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 and 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules to mediate the redirected killing of target cells, such molecules were incubated in the presence of T cells and JIMT-1 target cells. As shown in
Example 5
Properties of Exemplary Anti-CD3, Anti-CD8, Anti-ROR1 Tri-Specific Binding Molecules
(399) Additional exemplary Tri-Specific Binding Molecules specific for the Disease-Associated Antigen ROR1 were constructed. The ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 14).
(400) TABLE-US-00093 TABLE 14 Polypeptide Chain Domains Binding Affinity 1 VL(ROR1 mAb 1)-VH(CD3 Light Chain: ROR1 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(ROR1 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: ROR1 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(401) The amino acid sequence of the first polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:83):
(402) TABLE-US-00094 QLVLTQSPSA SASLGSSVKL TCTLSSGHKT DTIDWYQQQP GKAPRYLMKL EGSGSYNKGS GVPDRFGSGS SSGADRYLTI SSLQSEDEAD YYCGTDYPGN YLFGGGTQLT VLGGGGSGGG GEVQLVESGG GLVQPGGSLR LSCAASGFTF STYAMNWVRQ APGKGLEWVG RIRSKYNNYA TYYADSVKGR FTISRDDSKN SLYLQMNSLK TEDTAVYYCV RHGNFGNSYV SWFAYWGQGT LVTVSSGGCG GGEVAALEKE VAALEKEVAA LEKEVAALEK GGGDKTHTCP PCPAPEAAGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ VYTLPPSREE MTKNQVSLWC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK
(403) The amino acid sequence of the second polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:84):
(404) TABLE-US-00095 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQE QLVESGGGLV QPGGSLRLSC AASGFTFSDY YMSWVRQAPG KGLEWVATIY PSSGKTYYAD SVKGRFTISS DNAKNSLYLQ MNSLRAEDTA VYYCARDSYA DDAALFDIWG QGTTVTVSSG GCGGGKVAAL KEKVAALKEK VAALKEKVAA LKE
(405) The amino acid sequence of the third polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:85):
(406) TABLE-US-00096 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPG
(407) The amino acid sequence of the fourth polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:86):
(408) TABLE-US-00097 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(409) The ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 15).
(410) TABLE-US-00098 TABLE 15 Polypeptide Chain Domains Binding Affinity 1 VL(ROR1 mAb 1)-VH(CD3 Light Chain: ROR1 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(ROR1 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: ROR1 3 Heavy Chain CD8 mAb 2 CD8 4 Light Chain CD8 mAb 2 CD8
(411) The amino acid sequence of the first polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:87):
(412) TABLE-US-00099 QLVLTQSPSA SASLGSSVKL TCTLSSGHKT DTIDWYQQQP GKAPRYLMKL EGSGSYNKGS GVPDRFGSGS SSGADRYLTI SSLQSEDEAD YYCGTDYPGN YLFGGGTQLT VLGGGGSGGG GEVQLVESGG GLVQPGGSLR LSCAASGFTF STYAMNWVRQ APGKGLEWVG RIRSKYNNYA TYYADSVKGR FTISRDDSKN SLYLQMNSLK TEDTAVYYCV RHGNFGNSYV SWFAYWGQGT LVTVSSGGCG GGEVAALEKE VAALEKEVAA LEKEVAALEK GGGDKTHTCP PCPAPEAAGG PSVFLFPPKP KDTLMISRTP EVTCVVVDVS HEDPEVKFNW YVDGVEVHNA KTKPREEQYN STYRVVSVLT VLHQDWLNGK EYKCKVSNKA LPAPIEKTIS KAKGQPREPQ VYTLPPSREE MTKNQVSLWC LVKGFYPSDI AVEWESNGQP ENNYKTTPPV LDSDGSFFLY SKLTVDKSRW QQGNVFSCSV MHEALHNHYT QKSLSLSPGK
(413) The amino acid sequence of the second polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:88):
(414) TABLE-US-00100 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGINKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQE QLVESGGGLV QPGGSLRLSC AASGFTFSDY YMSWVRQAPG KGLEWVATIY PSSGKTYYAD SVKGRFTISS DNAKNSLYLQ MNSLRAEDTA VYYCARDSYA DDAALFDIWG QGTTVTVSSG GCGGGKVAAL KEKVAALKEK VAALKEKVAA LKE
(415) The amino acid sequence of the third polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:89):
(416) TABLE-US-00101 QVQLVESGGG VVQPGRSLRL SCAASGFTFS DFGMNWVRQA PGKGLEWVAL IYYDGSNKFY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCAKPH YDGYYHFFDS WGQGTLVTVS SASTKGPSVF PLAPSSKSTS GGTAALGCLV KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ TYICNVNHKP SNTKVDKRVE PKSCDKTHTC PPCPAPEAAG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRE EMTKNQVSLS CAVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL VSKLTVDKSR WQQGNVFSCS VMHEALHNRY TQKSLSLSPG K
(417) The amino acid sequence of the fourth polypeptide chain of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecule is (SEQ ID NO:90):
(418) TABLE-US-00102 DIQMTQSPSS LSASVGDRVT ITCKGSQDIN NYLAWYQQKP GKAPKLLIYN TDILHTGVPS RFSGSGSGTD FTFTISSLQP EDIATYYCYQ YNNGYTFGQG TKVEIKRTVA APSVFIFPPS DEQLKSGTAS VVCLLNNFYP REAKVQWKVD NALQSGNSQE SVTEQDSKDS TYSLSSTLTL SKADYEKHKV YACEVTHQGL SSPVTKSFNR GEC
(419) The properties of ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules were compared with those of a ROR1×CD3 DART™ containing an Fc Domain. The DART™ and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules were constructed using the Fv sequences from an anti-ROR1 monoclonal antibody, ROR1 mAb 1, that binds to the ROR-1 antigen.
(420) The two ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules and DART all were active in CTL assays against JIMT1-luc and A549 target cells. However, the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules exhibited dramatically increased activity with CD8+ T cell and pan T cell effectors.
(421) The ability of the ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 and ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 Tri-Specific Binding Molecules to mediate re-directed killing of target cells was measured using both a luciferase assay and an LDH assay. In both cases, re-directed killing was observed.
(422) TABLE-US-00103 TABLE 16 EC50 Ratio Effector Cells CD4 CD4 Tri-Specific Binding Molecule CD4 CD8 Pan T CD8 CD8 Pan T JIMT-1 LUC Target Cells (Luciferase Assay) ROR1 × CD3 DART ™ 0.45 0.4064 0.3931 1.1 1.0 1.0 ROR 1 mAb 1/CD3 inAb 2/CD8 0.131 0.0009 0.0015 145.3 131.3 262.1 mAb 1 Tri-Specific Binding Molecule ROR 1 mAb 1/CD3 mAb 2/CD8 0.174 0.0011 0.0016 158.0 142.7 245.7 mAb 2 Tri-Specific Binding Molecule JIMT-1 LUC Target Cells (LDH Assay) ROR1 × CD3 DART ™ 0.291 0.7761 0.7643 0.4 1.0 1.0 ROR 1 mAb 1/CD3 mAb 2/CD8 0.095 0.0017 0.0053 55.9 149.0 144.2 mAb 1 Tri-Specific Binding Molecule ROR 1 mAb 1/CD3 mAb 2/CD8 0.277 0.0021 0.0057 131.8 351.3 134.1 mAb 2 Tri-Specific Binding Molecule A549 ROR1 × CD3 DART ™ 0.762 0.468 0.5305 1.6 1.0 1.0 ROR 1 mAb 1/CD3 mAb 2/CD8 0.879 0.0102 0.0231 86.2 53.0 23.0 mAb 1 Tri-Specific Binding Molecule ROR 1 mAb 1/CD3 mAb 2/CD8 1.257 0.009 0.0126 139.7 85.8 42.1 mAb 2 Tri-Specific Binding Molecule
Example 6
Properties of Exemplary Anti-CD3, Anti-CD8, Anti-Env Tri-Specific Binding Molecules
(423) Additional exemplary Tri-Specific Binding Molecules specific for the Disease-Associated Antigen HIV (gp140 antigen) were constructed. The HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 17).
(424) TABLE-US-00104 TABLE 17 Polypeptide Chain Domains Binding Affinity 1 VL(HIV mAb 1)-VH(CD3 Light Chain: HIV mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(HIV Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: HIV 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(425) The amino acid sequence of the first polypeptide chain of the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:91):
(426) TABLE-US-00105 DIVMTQSPDS LAVSPGERAT IHCKSSQTLL YSSNNRHSIA WYQQRPGQPP KLLLYWASMR LSGVPDRFSG SGSGTDFTLT INNLQAEDVA IYYCHQYSSH PPTFGHGTRV EIKGGGSGGG GEVQLVESGG GLVQPGGSLR LSCAASGFTF STYAMNWVRQ APGKGLEWVG RIRSKYNNYA TYYADSVKGR FTISRDDSKN SLYLQMNSLK TEDTAVYYCV RHGNFGNSYV SWFAYWGQGT LVTVSSASTK GEVAACEKEV AALEKEVAAL EKEVAALEKG GGDKTHTCPP CPAPEAAGGP SVFLFPPKPK DTLMISRTPE VTCVVVDVSH EDPEVKFNWY VDGVEVHNAK TKPREEQYNS TYRVVSVLTV LHQDWLNGKE YKCKVSNKAL PAPIEKTISK AKGQPREPQV YTLPPSREEM TKNQVSLWCL VKGFYPSDIA VEWESNGQPE NNYKTTPPVL DSDGSFFLYS KLTVDKSRWQ QGNVFSCSVM HEALHNHYTQ KSLSLSPGK
(427) The amino acid sequence of the second polypeptide chain of the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule polypeptide is (SEQ ID NO:92):
(428) TABLE-US-00106 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGGGVF KPGGSLRLSC EASGFTFTEY YMTWVRQAPG KGLEWLAYIS KNGEYSKYSP SSNGRFTISR DNAKNSVFLQ LDRLSADDTA VYYCARADGL TYFSELLQYI FDLWGQGARV TVSSASTKGK VAACKEKVAA LKEKVAALKE KVAALKE
(429) The amino acid sequence of the third polypeptide chain of the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:93):
(430) TABLE-US-00107 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPG
(431) The amino acid sequence of the fourth polypeptide chain of the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:94):
(432) TABLE-US-00108 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(433) The HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule was composed of four different polypeptide chains (Table 18).
(434) TABLE-US-00109 TABLE 18 Polypeptide Chain Domains Binding Affinity 1 VL(HIV mAb 2)-VH(CD3 Light Chain: HIV mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(HIV Light Chain: CD3 mAb 2)-K-Coil Heavy Chain: HIV 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(435) The amino acid sequence of the first polypeptide chain of the HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:95):
(436) TABLE-US-00110 QSALTQPPSA SGSPGQSVTI SCTGTSSDVG GYNYVSWYQH HPGKAPKLII SEVNNRPSGV PDRFSGSKSG NTASLTVSGL QAEDEAEYYC SSYTDIHNFV FGGGTKLTVL GGGSGGGGEV QLVESGGGLV QPGGSLRLSC AASGFTFSTY AMNWVRQAPG KGLEWVGRIR SKYNNYATYY ADSVKGRFTI SRDDSKNSLY LQMNSLKTED TAVYYCVRHG NFGNSYVSWF AYWGQGTLVT VSSASTKGEV AACEKEVAAL EKEVAALEKE VAALEKGGGD KTHTCPPCPA PEAAGGPSVF LFPPKPKDTL MISRTPEVTC VVVDVSHEDP EVKFNWYVDG VEVHNAKTKP REEQYNSTYR VVSVLTVLHQ DWLNGKEYKC KVSNKALPAP IEKTISKAKG QPREPQVYTL PPSREEMTKN QVSLWCLVKG FYPSDIAVEW ESNGQPENNY KTTPPVLDSD GSFFLYSKLT VDKSRWQQGN VFSCSVMHEA LHNHYTQKSL SLSPGK
(437) The amino acid sequence of the second polypeptide chain of the HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:96):
(438) TABLE-US-00111 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGINKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLQESGPGLV KPSQTLSLSC TVSGGSSSSG AHYWSWIRQY PGKGLEWIGY IHYSGNTYYN PSLKSRITIS QHTSENQFSL KLNSVTVADT AVYYCARGTR LRTLRNAFDI WGQGTLVTVS SASTKGKVAA CKEKVAALKE KVAALKEKVA ALKE
(439) The amino acid sequence of the third polypeptide chain of the HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:97):
(440) TABLE-US-00112 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPG
(441) The amino acid sequence of the fourth polypeptide chain of the HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:98):
(442) TABLE-US-00113 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(443) Tri-Specific Binding Molecules were prepared having a Binding Domain capable of binding to the gp140 antigen of Human immunodeficiency Virus (HIV) (i.e., an HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule and an HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule).
(444) As a preliminary step, the ability of the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 and HIV mAb 2/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecules were assessed. Two μg/ml of JR-FL strain gp140 protein in 0.2 M carbonate-bicarbonate buffer (pH 9.4) was coated onto a solid support, and then incubated with the Tri-Specific Binding Molecules (at a starting concentration of 5 μg/ml, followed by 1:2 serial dilutions). At the conclusion of the assay, binding was blocked with phosphate buffered saline (PBS) containing 3% bovine serum albumin (BSA). Binding was detected by ELISA (pico (ThermoScientific-Pierce) using anti-human IgG—that had been conjugated to horseradish peroxidase (HRP). The assay was also used with immobilized human CD3 (2 μg/ml) in order to assess the ability of the molecules to bind to CD3. Both Tri-Specific Binding Molecules were found to be able to bind to the soluble, immobilized gp140 protein (
(445) The Tri-Specific Binding Molecules were found to be capable of binding to the surface of cells that express the HIV env protein. To demonstrate this aspect of the invention, HIV env-expressing HEK293/D375 cells under doxycycline induction were incubated with the Tri-Specific Binding Molecules. Detection of binding was performed using biotinylated anti-human Fc antibody and Streptavidin-APC. As shown in
(446) In order to demonstrate the ability of such Tri-Specific Binding Molecules to mediate re-directed killing of HIV-infected cells, the ability of such molecules to bind to PBMC was assessed. Human blood was lysed with ACK lysing buffer, washed 2× with PBS and re-suspended in FACS buffer contained 10% Human AB serum and incubated at room temperature for 20 minutes. Thereafter, the cells were pelleted by centrifugation and re-suspended (4×10.sup.6 cells/mL) in FACS buffer. 50 μL of serial titrated Tri-Specific Binding Molecules were added into wells of a 96-well deep plate. 50 μL of the cells (4×10.sup.6 cells/mL) well-mixed cells in FACS buffer containing 0.01% sodium azide were then added into corresponding wells and mixed thoroughly using a pipette. The plate was incubated in the dark for about 45 minutes at 2-8° C. At the end of incubation, the cells were washed twice by adding 300 μL of FACS buffer to each well, the plate was centrifuged at 1,200 rpm for 5 minutes, and the supernatant was discarded. The cell pellets were re-suspended in 100 μL mixture of goat anti-Human IgG Fcγ-PE, CD5-APC and CD4-PerCP5.5 prepared in FACS buffer containing 0.01% sodium azide, and the cells were incubated in the dark for about 45 minutes at 2-8° C. At the end of the incubation, the cells were washed, re-suspended with FACS buffer, and analyzed with a BD Caliber flow cytometer. As shown in
(447) The Tri-Specific Binding Molecules were incubated at 37° C. for 24 hours in the presence of HIV env-expressing Jurkat 522 FY cells and pan T cells in the presence or absence of tetracycline, and cytotoxicity was measured using an LDH assay. As shown in
(448) A cytotoxicity analysis was conducted using purified pan T cells and HIV env-expressing Jurkat 522 FY cells and the percent of live cells was measured. The results of this analysis are shown in
(449) An assessment was made of the CTL activity of Tri-Specific Binding Molecules on HIV env-expressing Jurkat 522 FY cells using CD4+, CD8+ or pan T cells. The results of this assessment with respect to the HIV mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule are shown in
(450) TABLE-US-00114 TABLE 19 Jurkat Cells 522FY (% Cytotoxicity Relative to LDH MR from Target Cell w/o Binding Molecule) HIV mAb 1/CD3 mAb HIV mAb 2/CD 3 mAb HIV mAb 1, 2/CD8 mAb 1 HIV mAb 2, 2/CD8 mAb 1 CD 3 mAb 2 Tri-Specific Binding CD3 mAb 2 Tri-Specific Binding DART ™ Molecule DART ™ Molecule EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % CD4 0.67 13 0.36 15 0.25 9 0.45 8 CD8 0.20 18 0.00781 37 0.052 16 0.00040 27 Pan T 0.31 19 0.044 38 0.26 16 0.0015 23
(451) The impact of varying the ratio or target:effector cells was evaluated. Table 20 summarizes the obtained results.
(452) TABLE-US-00115 TABLE 20 Jurkat Cells 522FY (% Cytotoxicity Relative to LDH MR from Target Cell w/o Binding Molecule HIV mAb 1 Binding Domain HIV mAb 2 Binding Domain E/T = 5:1 E/T = 10:1 E/T = 5:1 E/T = 10:1 EC.sub.50 nM E.sub.max % EC.sub.50 nM E.sub.max % EC.sub.50 nM E.sub.max % EC.sub.50 nM E.sub.max % DART ™ 0.076 26 0.066 27 0.00057 24 0.00061 25 DART ™ 0.0092 15 0.0066 15 0.0058 15 0.0054 15 Tri-Specific 0.00019 22 0.00029 24 0.00032 25 0.00026 24 Binding Molecule
(453) An assessment was also made of the CTL activity of Tri-Specific Binding Molecules on HIV env-expressing HEK293 cells using CD4+, CD8+ or pan T cells. The results of this assessment are summarized in Table 21.
(454) TABLE-US-00116 TABLE 21 (% Cytotoxicity Relative to LDH MR from Target Cell w/o Tri-Specific Binding Molecule) HEK293 D371 Cells HEK293 D375 Cells HIV mAb 1/CD3 mAb HIV mAb 2/CD3 mAb HIV mAb 1, 2/CD8 mAb 1 HIV mAb 2, 2/CD8 mAb 1 CD3 mAb 2 Tri-Specific CD3 mAb 2 Tri-Specific DART ™ Binding Molecule DART ™ Binding Molecule EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % EC.sub.50, nM E.sub.max, % CD4 0.45 0.64 3.16 1.12 0.15 0.14 0.84 0.18 CD8 0.029 0.0062 1.77 0.0043 0.018 0.0012 1.00 0.0020 Pan T 0.082 0.025 2.06 N/A 0.042 0.0085 1.08 N/A
Example 7
Comparison of CD3 Binding Domain Affinity Variants
(455) As noted above, the CD3, CD8 or Disease-Associated Antigen-Binding Domains of the Tri-Specific Binding Molecules of the present invention may be mutated in order to isolate Binding Domains having more desired binding characteristics. The CD3 mAb 2 Binding Domain was subjected to such mutagenesis and two affinity variants (CD3 mAb 2 Low and CD3 mAb 2 Fast) were isolated.
(456) The amino acid sequence of the Variable Light Chain Domain of anti-human CD3 mAb 2 Low is (SEQ ID NO:99):
(457) TABLE-US-00117 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG
(458) The amino acid sequence of the Variable Heavy Chain Domain of anti-human CD3 mAb 2 Low is (SEQ ID NO:100):
(459) TABLE-US-00118 EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKGRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HGNFGNSYVT WFAYWGQGTL VTVSS
(460) The amino acid sequence of the Variable Light Chain Domain of anti-human CD3 mAb 2 Fast is (SEQ ID NO:101):
(461) TABLE-US-00119 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGTNKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG
(462) The amino acid sequence of the Variable Heavy Chain Domain of anti-human CD3 mAb 2 Fast is (SEQ ID NO: 102):
(463) TABLE-US-00120 EVQLVESGGG LVQPGGSLRL SCAASGFTFS TYAMNWVRQA PGKGLEWVGR IRSKYNNYAT YYADSVKGRF TISRDDSKNS LYLQMNSLKT EDTAVYYCVR HKNFGNSYVT WFAYWGQGTL VTVSS
(464)
(465) In order to assess the effect of CD3 binding characteristics, two CD3 Binding Domain mutants were used. Three Tri-Specific Binding Molecule specific for the Disease-Associated Antigen 5T4 were constructed utilizing a wild-type CD3 mAb 2 Variable Domain sequence, a CD3 mAb 2 Variable Domain sequence with low affinity for CD3 and a CD3 mAb 2 Variable Domain sequence with wild-type affinity but a faster off rate. The 5T4 Variable Domain specificities and CD8 Variable Domain specificities were the same between the three Tri-Specific Binding Molecules. The first Tri-Specific Binding Molecule is termed 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 and was composed of four different polypeptide chains (Table 22).
(466) TABLE-US-00121 TABLE 22 Polypeptide Chain Domains Binding Affinity 1 VL(5T4 mAb 1)-VH(CD3 Light Chain: 5T4 mAb 2)-E-Coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2)-VH(5T4 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: 5T4 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(467) The amino acid sequence of the first polypeptide chain of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:103):
(468) TABLE-US-00122 DIQMTQSPSS LSASVGDRVT ITCRASQGIS NYLAWFQQKP GKAPKSLIYR ANRLQSGVPS RFSGSGSGTD FTLTISSLQP EDVATYYCLQ YDDFPWTFGQ GTKLEIKGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKGRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHGNFG NSYVSWFAYW GQGTLVTVSS GGCGGGEVAA LEKEVAALEK EVAALEKEVA ALEKGGGDKT HTCPPCPAPE AAGGPSVFLF PPKPKDTLMI SRIPEVICVV VDVSHEDPEV KFNWYVDGVE VHNAKTKPRE EQYNSTYRVV SVLTVLHQDW LNGKEYKCKV SNKALPAPIE KTISKAKGQP REPQVYTLPP SREEMTKNQV SLWCLVKGFY PSDIAVEWES NGQPENNYKT TPPVLDSDGS FFLYSKLTVD KSRWQQGNVF SCSVMHEALH NHYTQKSLSL SPGK
(469) The amino acid sequence of the second polypeptide chain of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:104):
(470) TABLE-US-00123 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGINKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGAEVK KPGASVKVSC KASGYTFTSF WMHWVRQAPG QGLEWMGRID PNRGGTEYNE KAKSRVTMTA DKSTSTAYME LSSLRSEDTA VYYCAGGNPY YPMDYWGQGT TVTVSSGGCG GGKVAALKEK VAALKEKVAA LKEKVAALKE
(471) The amino acid sequence of the third polypeptide chain of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:105):
(472) TABLE-US-00124 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPGK
(473) The amino acid sequence of the fourth polypeptide chain of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:106):
(474) TABLE-US-00125 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(475) The second Tri-Specific Binding Molecule is termed 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 and was composed of four different polypeptide chains (Table 23).
(476) TABLE-US-00126 TABLE 23 Polypeptide Chain Domains Binding Affinity 1 VL(5T4 mAb 1)-VH(CD3 mAb Light Chain: 5T4 2 Low)-E-coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2 Low)-VH(5T4 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: 5T4 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(477) The amino acid sequence of the first polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:107):
(478) TABLE-US-00127 DIQMTQSPSS LSASVGDRVT ITCRASQGIS NYLAWFQQKP GKAPKSLIYR ANRLQSGVPS RFSGSGSGTD FTLTISSLQP EDVATYYCLQ YDDFPWTFGQ GTKLEIKGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKGRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHGNFG NSYVTWFAYW GQGTLVTVSS ASTKGEVAAC EKEVAALEKE VAALEKEVAA LEKGGGDKTH TCPPCPAPEA AGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR EPQVYTLPPS REEMTKNQVS LWCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF FLYSKLTVDK SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK
(479) The amino acid sequence of the second polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:108):
(480) TABLE-US-00128 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGINKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGAEVK KPGASVKVSC KASGYTFTSF WMHWVRQAPG QGLEWMGRID PNRGGTEYNE KAKSRVTMTA DKSTSTAYME LSSLRSEDTA VYYCAGGNPY YPMDYWGQGT TVTVSSASTK GKVAACKEKV AALKEKVAAL KEKVAALKE
(481) The amino acid sequence of the third polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:109):
(482) TABLE-US-00129 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPGK
(483) The amino acid sequence of the fourth polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:110):
(484) TABLE-US-00130 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(485) The third Tri-Specific Binding Molecule is termed 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 and was composed of four different polypeptide chains (Table 24).
(486) TABLE-US-00131 TABLE 24 Polypeptide Chain Domains Binding Affinity 1 VL(5T4 mAb 1)-VH(CD3 mAb Light Chain: 5T4 2 Fast)-E-coil-(CH2-CH3) Heavy Chain: CD3 2 VL(CD3 mAb 2 Fast)-VH(5T4 Light Chain: CD3 mAb 1)-K-Coil Heavy Chain: 5T4 3 Heavy Chain CD8 mAb 1 CD8 4 Light Chain CD8 mAb 1 CD8
(487) The amino acid sequence of the first polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:111):
(488) TABLE-US-00132 DIQMTQSPSS LSASVGDRVT ITCRASQGIS NYLAWFQQKP GKAPKSLIYR ANRLQSGVPS RFSGSGSGTD FTLTISSLQP EDVATYYCLQ YDDFPWTFGQ GTKLEIKGGG SGGGGEVQLV ESGGGLVQPG GSLRLSCAAS GFTFSTYAMN WVRQAPGKGL EWVGRIRSKY NNYATYYADS VKGRFTISRD DSKNSLYLQM NSLKTEDTAV YYCVRHKNFG NSYVTWFAYW GQGTLVTVSS ASTKGEVAAC EKEVAALEKE VAALEKEVAA LEKGGGDKTH TCPPCPAPEA AGGPSVFLFP PKPKDTLMIS RTPEVTCVVV DVSHEDPEVK FNWYVDGVEV HNAKTKPREE QYNSTYRVVS VLTVLHQDWL NGKEYKCKVS NKALPAPIEK TISKAKGQPR EPQVYTLPPS REEMTKNQVS LWCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF FLYSKLTVDK SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK
(489) The amino acid sequence of the second polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:112):
(490) TABLE-US-00133 QAVVTQEPSL TVSPGGTVTL TCRSSTGAVT TSNYANWVQQ KPGQAPRGLI GGINKRAPWT PARFSGSLLG GKAALTITGA QAEDEADYYC ALWYSNLWVF GGGTKLTVLG GGGSGGGGQV QLVQSGAEVK KPGASVKVSC KASGYTFTSF WMHWVRQAPG QGLEWMGRID PNRGGTEYNE KAKSRVTMTA DKSTSTAYME LSSLRSEDTA VYYCAGGNPY YPMDYWGQGT TVTVSSASTK GKVAACKEKV AALKEKVAAL KEKVAALKE
(491) The amino acid sequence of the third polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:113):
(492) TABLE-US-00134 EVQLQQSGAE LVKPGASVKL SCTASGFNIK DTYIHFVRQR PEQGLEWIGR IDPANDNTLY ASKFQGKATI TADTSSNTAY MHLCSLTSGD TAVYYCGRGY GYYVFDHWGQ GTTLTVSSAS TKGPSVFPLA PSSKSTSGGT AALGCLVKDY FPEPVTVSWN SGALTSGVHT FPAVLQSSGL YSLSSVVTVP SSSLGTQTYI CNVNHKPSNT KVDKRVEPKS CDKTHTCPPC PAPEAAGGPS VFLFPPKPKD TLMISRTPEV TCVVVDVSHE DPEVKFNWYV DGVEVHNAKT KPREEQYNST YRVVSVLTVL HQDWLNGKEY KCKVSNKALP APIEKTISKA KGQPREPQVY TLPPSREEMT KNQVSLSCAV KGFYPSDIAV EWESNGQPEN NYKTTPPVLD SDGSFFLVSK LTVDKSRWQQ GNVFSCSVMH EALHNRYTQK SLSLSPGK
(493) The amino acid sequence of the fourth polypeptide chain of the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule is (SEQ ID NO:114):
(494) TABLE-US-00135 DVQINQSPSF LAASPGETIT INCRTSRSIS QYLAWYQEKP GKTNKLLIYS GSTLQSGIPS RFSGSGSGTD FTLTISGLEP EDFAMYYCQQ HNENPLTFGA GTKLELRRTV AAPSVFIFPP SDEQLKSGTA SVVCLLNNFY PREAKVQWKV DNALQSGNSQ ESVTEQDSKD STYSLSSTLT LSKADYEKHK VYACEVTHQG LSSPVTKSFN RGEC
(495) Human PBMC of healthy donors were treated as described above and incubated with the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule, the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule and the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule. 5T4×CD3 DART™ (with wild-type, Low and Fast CD3 specificities) were used as controls. The 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 and 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecules contain mutated CD3 Binding Domains that exhibit altered affinity and binding kinetics for CD3.
(496) The Tri-Specific Binding Molecules were found to exhibit weaker binding to the CD5.sup.+ CD4.sup.+ cells (
(497)
(498) In order to assess the effects of the Tri-Specific Binding Molecules on cytokine profiles, PBMCs from two donors were incubated in the presence of increasing concentrations of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule, the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule and the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule for 24 hours. The levels of six cytokines (IFN-γ, TNF-α, IL-10, IL-6, IL-4 and IL-2) were measured. The results are shown in
(499) The 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule exhibited similar potency to a DART™, 1 pM EC50 compared to 1.3 pM for the DART™, using pan T cells as effectors. The activity of the DART™ may already be maximal for both CD4+ and CD8+ T cells. The Tri-Specific Binding Molecule does shift the activity toward the CD8+ population and away from the CD4+ population which is beneficial in terms of cytokine release, particularly IL-2 and TNFα.
(500) Although the 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 Tri-Specific Binding Molecule was able to bind CD4+ and CD8+ T cells, its ability to redirect cytolysis of or by those cells was greatly reduced compared to the non-mutated CD3 mAb 2 Binding Domain. The 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule on the other hand retained CTL activity, particularly with CD8+ T cells compared/relative to CD4+ T cells (75-fold difference in EC50s) compared to the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule (7-fold difference in EC50s). The EC50 for the 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 Tri-Specific Binding Molecule was similar to that of the 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 Tri-Specific Binding Molecule (2.8 vs 1.3 pM), but the dramatic difference in CD8+ vs CD4+ T cell targeting virtually eliminated the cytokine release that was observed with a 5T4×CD3 DART™ in human PBMC cultures.
Example 8
Summary of EC50 Data of Exemplary Tri-Specific Binding Molecules
(501) In summary, a series of 14 Tri-Specific Binding Molecules were constructed (Table 25), each having two Diabody-Type Binding Domains (Site A and Site B), and one Fab-Type Binding Domain (Sites C):
(502) TABLE-US-00136 TABLE 25 Binding Domain Name Site A Site B Site C B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 B7-H3 CD3 CD8 CD3 mAb 2/CD8 mAb 1/B7-H3 mAb 1 CD3 CD8 B7-H3 B7-H3 mAb 1/CD8 mAb 1/CD3 mAb 2 B7-H3 CD8 CD3 B7-H3 mAb 1/CD3 mAb 2/CD8 mAb 1 B7-H3 CD3 CD8 5T4 mAb 1/CD3 mAb 2/CD8 mAb 1 5T4 CD3 CD8 5T4 mAb 1/CD3 mAb 2 Low/CD8 mAb 1 5T4 CD3 Low CD8 5T4 mAb 1/CD3 mAb 2 Fast/CD8 mAb 1 5T4 CD3 Fast CD8 5T4 mAb 2/CD3 mAb 2/CD8 mAb 1 5T4 CD3 CD8 5T4 mAb 2/CD3 mAb 2/CD8 mAb 2 5T4 CD3 CD8 Palivizumab/CD3 mAb 2/CD8 mAb 1 RSV CD3 CD8 ROR1 mAb 1/CD3 mAb 2/CD8 mAb 1 ROR1 CD3 CD8 ROR1 mAb 1/CD3 mAb 2/CD8 mAb 2 ROR1 CD3 CD8 HIV mAb 1/CD3 mAb 2/CD8 mAb 1 HIV CD3 CD8 HIV mAb 2/CD3 mAb 2/CD8 mAb 1 HIV CD3 CD8
(503) The EC50 data of such Tri-Specific Binding Molecules is summarized in Table 26 (Target cells: JIMT1-luc; Effector:Target Cell Ratio 5:1). In some cases (shown as NR in Table 26), the EC50 could not be calculated from the data because maximal killing was not achieved.
(504) TABLE-US-00137 TABLE 26 EC50 nM) to DART to DART Target Binding Molecule CD8+ CD4+ PanT CD4/CD8 CD4/CD8 EC50 w/PanT B7H3 B7-H3/CD3 mAb 2 0.5090 1.1370 0.6943 2.2 1.0 1.0 DART ™ B7-H3/CD8 mAb 1 NR NR NR — — — DART ™ B7-H3 mAb 1/CD3 mAb 0.0054 0.0721 0.0082 13.3 5.9 85.1 2/CD8 mAb 1 Tri-Specific Binding Molecule B7-H3 mAb 1/CD3 mAb 0.0051 0.3138 0.0058 61.5 27.5 119.7 2/CD8 mAb 2 Tri-Specific Binding Molecule CD3 mAb 2/CD8 mAb 0.0053 0.1055 0.0113 19.8 8.9 61.4 2/B7-H3 mAb 1 Tri-Specific Binding Molecule B7-H3 mAb 1/CD8 mAb 0.4125 1.1030 0.5347 2.7 1.2 1.3 2/CD3 mAb 2 Tri-Specific Binding Molecule 5T4 5T4 mAb 1/CD3 mAb 2 0.0012 0.0013 0.0013 1.1 1.0 1.0 DART ™ 5T4 mAb 1/CD3 mAb 0.0007 0.0045 0.0009 6.8 6.4 1.5 2/CD8 mAb 1 Tri-Specific Binding Molecule 5T4 mAb 1/CD3 mAb 2 NR NR NR — — — Low/CD8 mAb 1 Tri-Specific Binding Molecule 5T4 mAb 1/CD3 mAb 2 0.0021 0.1598 0.0028 74.7 70.6 0.5 Fast/CD8 mAb 1 Tri-Specific Binding Molecule 5T4 mAb 2/CD3 mAb 2 0.0362 0.0561 0.0449 1.6 1.0 1.0 DART ™ 5T4 mAb 2/CD3 mAb 0.0013 0.0435 0.0020 32.7 21.1 22.1 2/CD8 mAb 1 Tri-Specific Binding Molecule 5T4 mAb 2/CD3 mAb 0.0015 0.0336 0.0018 23.2 14.9 25.0 2/CD8 mAb 2 Tri-Specific Binding Molecule RSV Palivizumab/CD3 mAb NR NR NR — — — 2/CD8 mAb 1 Tri-Specific Binding Molecule ROR1 ROR1/CD3 mAb 2 0.7761 0.2911 0.7643 0.4 1.0 1.0 DART ™ ROR1 mAb 1/CD3 mAb 0.0017 0.095 0.0053 55.9 149.0 144.2 2/CD8 mAb 1 Tri-Specific Binding Molecule ROR1 mAb 1/CD3 mAb 0.0021 0.2767 0.0057 131.8 351.3 134.1 2/CD8 mAb 2 Tri-Specific Binding Molecule
(505) All publications and patents mentioned in this specification are herein incorporated by reference to the same extent as if each individual publication or patent application was specifically and individually indicated to be incorporated by reference in its entirety. While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains and as may be applied to the essential features hereinbefore set forth.