RNA-coded antibody
11421038 · 2022-08-23
Assignee
Inventors
Cpc classification
A61K39/395
HUMAN NECESSITIES
C07K16/2863
CHEMISTRY; METALLURGY
A61P31/00
HUMAN NECESSITIES
C07K2317/51
CHEMISTRY; METALLURGY
A61K48/00
HUMAN NECESSITIES
A61K48/005
HUMAN NECESSITIES
A61K48/0075
HUMAN NECESSITIES
C07K2317/92
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C07K2317/94
CHEMISTRY; METALLURGY
C07K2317/24
CHEMISTRY; METALLURGY
A61K9/0019
HUMAN NECESSITIES
C07K16/1027
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
A61K48/0066
HUMAN NECESSITIES
International classification
A61K39/00
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
Abstract
The present application describes an antibody-coding, non-modified or modified RNA and the use thereof for expression of this antibody, for the preparation of a pharmaceutical composition, in particular a passive vaccine, for treatment of tumours and cancer diseases, cardiovascular diseases, infectious diseases, auto-immune diseases, virus diseases and monogenetic diseases, e.g. also in gene therapy. The present invention furthermore describes an in vitro transcription method, in vitro methods for expression of this antibody using the RNA according to the invention and an in vivo method.
Claims
1. A composition comprising isolated purified single-stranded linear mRNAs encoding an antibody, comprising RNA sequences encoding: (i) a first polypeptide comprising the variable domain of the antibody heavy chain (VH), linked to a heterologous secretory signal coding sequence; and (ii) a second polypeptide comprising the variable domain of the antibody light chain (VL), linked to a heterologous secretory signal coding sequence, wherein the mRNA has been purified by reverse phase chromatography, and wherein the composition is pharmaceutically acceptable.
2. The composition according to claim 1, wherein the antibody is a humanized antibody or a bispecific antibody.
3. The composition according to claim 1, wherein the mRNA is modified, wherein the modification is a sequence modification compared to a wild type mRNA that encodes the antibody.
4. The composition according to claim 3, wherein the mRNA has a G/C content in the coding region which is greater than the G/C content of the coding region of the wild type mRNA sequence, the coded amino acid sequence being unchanged with respect to the native mRNA.
5. The composition according to claim 3, wherein the coding region of the mRNA is modified compared with the coding region of the wild type mRNA such that at least one codon of the wild type mRNA which codes for a tRNA which is relatively rare in the cell is exchanged for a codon which codes for a tRNA which is relatively frequent in the cell and which carries the same amino acid as the relatively rare tRNA.
6. The composition according to claim 1, wherein the mRNA includes at least one base-modified nucleotide chosen from the group consisting of 2-amino-6-chloropurine riboside 5′-triphosphate, 2-aminoadeno sine 5′-triphosphate, 2-thiocytidine 5′-triphosphate, 2-thiouridine 5′-triphosphate, 4-thiouridine 5′-triphosphate, 5-aminoallylcytidine 5′-triphosphate, 5-aminoallyluridine 5′-triphosphate, 5-bromocytidine 5′-triphosphate, 5-bromouridine 5′-triphosphate, 5-iodocytidine 5′-triphosphate, 5-iodouridine 5′-triphosphate, 5-methylcytidine 5′-triphosphate, 5-methyluridine 5′triphosphate, 6-azacytidine 5′-triphosphate, 6-azauridine 5′-triphosphate, 6-chloropurine riboside 5′-triphosphate, 7-deazaadenosine 5′-triphosphate, 7-deazaguanosine 5′-triphosphate, 8-azaadenosine 5′-triphosphate, 8-azidoadenosine 5′-triphosphate, benzimidazole riboside 5′-triphosphate, N1-methyladenosine 5′-triphosphate, N1-methylguanosine 5′-triphosphate, N6-methyladenosine 5′-triphosphate, 06-methylguanosine 5′-triphosphate, pseudouridine 5′-triphosphate, puromycin 5′-triphosphate and xanthosine 5′-triphosphate.
7. The composition according to claim 6, wherein the base-modified nucleotides are chosen from the group consisting of 5-methylcytidine 5′-triphosphate and pseudouridine 5′-triphosphate.
8. The composition according to claim 1, wherein the mRNA additionally has a 5′ cap structure chosen from the group consisting of m7G(5′)ppp (5′(A,G(5′)ppp(5′)A and G(5′)ppp(5′)G.
9. The composition according to claim 1, wherein the mRNA additionally has a poly-A tail of 10 to 200 adenosine nucleotides (SEQ ID NO: 62).
10. The composition according to claim 1, wherein the mRNA additionally has a poly-C tail of 10 to 200 cytosine nucleotides (SEQ ID NO: 54).
11. The composition according to claim 1, wherein the mRNA additionally codes a tag for purification chosen from the group consisting of a polyhistidine tag (HIS tag), a hexahistidine tag (SEQ ID NO: 59), a streptavidin tag (Strep tag), an SBP tag (streptavidin-binding tag), a GST (glutathione S-transferase) tag, a Myc tag, a Swa11 epitope, a FLAG tag and an HA tag.
12. The composition according to claim 3, wherein the modified mRNA comprises sequences encoding the antibody codes for the heavy chains according to SEQ ID NO: 12 and the light chains according to SEQ ID NO: 14.
13. The composition according to claim 1, wherein the mRNA comprises a coding sequence according to SEQ ID NO: 15.
14. The composition according to claim 3, wherein the mRNA comprises a sequence at least 90% identical to the sequence SEQ ID NO: 15 over the total length of the nucleic acid sequence of SEQ ID NO: 15.
15. The composition according to claim 1, wherein the sequences encoding the VH and VL polypeptides are encoded on the same mRNA molecule and are separated by an internal ribosomal entry site (IRES).
16. The composition according to claim 15, wherein the mRNA comprises a poly-A sequence of 10 to 200 adenosine nucleotides and a poly-C sequence of 10 to 200 cytosine nucleotides.
17. The composition according to claim 1, wherein the VH and VL polypeptides comprise the variable domains of Trastuzumab, wherein the antibody binds to HER-2/neu.
18. The composition according to claim 17, wherein: (i) sequences encoding the VH and VL polypeptides are encoded on the same mRNA molecule and are separated by an internal ribosomal entry site (IRES); and (ii) the mRNA comprises a poly-A sequence of 10 to 200 adenosine nucleotides and a poly-C sequence of 10 to 200 cytosine nucleotides.
19. The composition according to claim 1, wherein the mRNA is modified, wherein the modification is a modification chosen from modifications of the nucleotide compared with a wild type mRNA by introduction of a non-native nucleotide and/or a chemically modified nucleotide.
20. The composition of claim 1, wherein the chromatography is over a porous stationary phase comprising non-alkylated polystyrene-divinylbenzene.
21. The composition according to claim 1, wherein the RNA has been additionally purified by affinity chromatography or gel filtration.
22. The composition according to claim 1, wherein, when expressed in a cell, the composition induces production of a CD-20 binding antibody.
23. The composition according to claim 1, wherein the composition comprises a mRNA encoding: (i) a first polypeptide comprising the variable domain heavy chain (VH) of a CD20-binding antibody; and (ii) a second polypeptide comprising the variable domain light chain (VL) of a CD20-binding antibody.
24. The composition according to claim 7, wherein the antibody is a bispecific antibody.
25. The composition according to claim 24, wherein the antibody binds to CD40.
26. The composition according to claim 7, wherein the antibody binds to CD40.
27. The composition according to claim 24, wherein the antibody binds to CD3.
28. The composition according to claim 7, wherein the antibody binds to CD3.
29. The composition according to claim 19, wherein the mRNA has a lipid modification.
30. The composition according to claim 19, wherein the mRNA contains on at least one nucleotide of the RNA a modification of a nucleotide, wherein the nucleotides are chosen from 1-methyl-adenine, 2-methyl-adenine, 2-methylthio-N-6-isopentenyl-adenine, N6-methyl-adenine, N6-isopentenyl-adenine, 2-thio-cytosine, 3-methylcytosine, 4-acetyl-cytosine, 5-methyl-cytosine, 2,6-diaminopurine, 1-methyl-guanine, 2-methyl-guanine, 2,2-dimethyl-guanine, 7-methyl-guanine, inosine, 1-methyl-inosine, dihydro-uracil, 2-thio-uracil, 4-thio-uracil, 5-carboxymethylaminomethyl-2-thio-uracil, 5-(carboxyhydroxymethyl)-uracil, 5-fluoro-uracil, 5-bromo-uracil, 5-carboxymethylaminomethyl-uracil, 5-methyl-2-thio-uracil, 5-methyl-uracil, N-uracil-5-oxyacetic acid methyl ester, 5-methylaminomethyl-uracil, 5-methoxyaminomethyl-2-thio-uracil, 5-methoxycarbonylmethyl-uracil, 5-methoxy-uracil, uracil-5-oxyacetic acid methyl ester, uracil-5-oxyacetic acid (v), pseudouracil, 1-methyl-pseudouracil, queosine, β-D-mannosyl-queosine, wybutoxosine, phosphoramidates, phosphorothioates, peptide nucleotides, methylphosphonates, 7-deazaguanosine, 5-methylcytosine and inosine.
31. The composition of claim 30, wherein the modified nucleotide is 1-methyl-pseudouracil.
Description
FIGURES
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(13) TABLE-US-00004 ACC linker for an optimum Kozak sequence AAGCTT HindIII TGA stop codon ACTAGT SpeI AGATCT BglII ATGCAT NsiI CATCATCATCATCATCAT (SEQ ID NO: 60) His tag Signal peptide, HLA-A*0201: GC-rich ATGGCCGTGATGGCGCCGCGGACCCTGGTCCTCCTGCTGAGCGGCGCCCT CGCCCTGACGCAGACCTGGGCCGGG (SEQ ID NO: 61). The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with CAG represents the actual antibody coding sequence (see ) The coding region for the light chain sequence starts 3′ upstream with the signal peptide's ATG as given above followed by the light chain's coding region for the light chain starting with CAG running to the stop codon TGA (
) (see
) The inventive RNA coded by the construct given in
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(19) TABLE-US-00005 ACC linker for an optimum Kozak sequence AAGCTT HindIII TGA stop codon ACTAGT SpeI AGATCT BglII ATGCAT NsiI CATCATCATCATCATCAT (SEQ ID NO: 60) His tag Signal peptide, HLA-A*0201: GC-rich ATGGCCGTGATGGCGCCGCGGACCCTGGTCCTCCTGCTGAGCGGCGCCCT CGCCCTGACGCAGACCTGGGCCGGG (SEQ ID NO: 61). The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with CAG represents the actual antibody coding sequence (see ) The coding region for the light chain sequence starts 3′ upstream with the signal peptide's ATG as given above followed by the light chain's coding region for the light chain starting with GAC running to the stop codon TGA (
) (see
) The inventive RNA coded by the construct given in
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(25) TABLE-US-00006 ACC linker for an optimum Kozak sequence AAGCTT HindIII TGA stop codon ACTAGT SpeI AGATCT BglII ATGCAT NsiI CATCATCATCATCATCAT (SEQ ID NO: 60) His tag Signal peptide, HLA-A*0201: GC-rich ATGGCCGTGATGGCGCCGCGGACCCTGGTCCTCCTGCTGAGCGGCGCCC TCGCCCTGACGCAGACCTGGGCCGGG (SEQ ID NO: 61). The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with GAG represents the actual antibody coding sequence (see
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(31) The following examples explain the present invention in more detail, without limiting it.
EXAMPLES
1. Example
(32) 1.1 Cell Lines and Cell Culture Conditions Used:
(33) The cell lines HeLa (human cervix carcinoma cell line; Her2-positive), HEK293 (human embryonal kidney; Her2-negative) and BHK21 (Syrian hamster kidney; Her2-negative) were obtained from the DMSZ (Deutsche Sammlung von Mikroorganismen and Zellkulturen GmbH) in Braunschweig and cultured in RPMI medium enriched with 2 mM L-glutamine (Bio Whittaker) and 10 μg/ml streptomycin and 10 μml of penicillin at 37° C. under 5% CO.sub.2.
(34) 1.2 Preparation of Expression Vectors for Modified RNA Sequences According to the Invention:
(35) For the production of modified RNA sequences according to the invention, the GC-enriched and translation-optimized DNA sequences which code for a heavy chain and a light chain of an antibody (e.g. cetuximab (ERBITUX®), trastuzumab (HERCEPTIN®) and rituximab (RITUXAN®), cf. SEQ ID NO: 1-15, where SEQ ID NO: 1, 3, 6, 8, 11 and 13 represent the particular coding sequences which are not GC-optimized of the heavy and the light chains of these antibodies and SEQ ID NO: 2, 4, 5, 7, 9, 10, 12, 14 and 15 represent the coding GC-enriched sequences (see above)) were cloned into the pCV19 vector (Cure Vac GmbH) by standard molecular biology methods. To ensure equimolar expression of the two chains, an IRES (internal ribosomal entry site) was introduced. The mutated 3′ UTR (untranslated region) of the alpha-globin gene and a polyA-polyC tail at the 3′ end serve for additional stabilizing of the mRNA. The signal peptide of the HLA-A*0201 gene is coded for secretion of the antibody expressed. A His tag was additionally introduced for detection of the antibody.
(36) 1.3 Preparation of the G/C-Enriched and Translation-Optimized Antibody-Coding mRNA
(37) An in vitro transcription was carried out by means of T7 polymerase (T7-Opti mRNA Kit, CureVac, Tubingen, Germany), followed by purification with Pure Messenger™ (CureVac, Tubingen, Germany). For this, a DNase digestion was first carried out, followed by an LiCl precipitation and thereafter an HPLC using a porous reverse phase as the stationary phase (PURE Messenger).
(38) 1.4 Detection of RNA-Antibody by Means of Flow Cytometry:
(39) 1 million cells were transfected with the mRNA according to one of SEQ ID NO: 5, 10 or 15 (see above), which codes for an antibody as described above, by means of electroporation and were then cultured in the medium for 16 h. The antibody expressed was detected by means of an FITC-coupled His tag antibody. Alternatively, the secreted antibody from the supernatant of transfected cells was added to non-transfected, antigen-expressing cells and, after incubation, detected by the same method.
(40) 1.5 In Vitro Detection of an Antibody Coded by an RNA according to the Invention by Means of ELISA:
(41) A microtitre plate was loaded with a murine antibody (1) against a first antigen (HER-2). Cell lysate of antigen-expressing cells was then added to the plate. The antigen was bound here by the murine antigen-specific antibody (1). The supernatant of cells which were transfected with a modified mRNA according to the invention which codes for an HER-2-specific antibody was then added to the microtitre plate. The HER-2-specific antibody (2) contained in the supernatant likewise binds to the antibody-bound antigen, the two antibodies recognizing different domains of the antigen. For detection of the bound antibody (2), anti-human IgG coupled to horseradish peroxidase (3-HRP) was added, the substrate TMB being converted and the result determined photometrically.
(42) 1.6 In Vivo Detection of an Antibody Coded by an RNA according to the Invention:
(43) An antibody-coding (m)RNA according to the invention as described above was injected intradermally or intramuscularly into BALB/c mice. 24 h thereafter, the corresponding tissues were removed and protein extracts were prepared. The expression of the antibody was detected by means of ELISA as described here.
(44) 1.7 Detection of an Antibody Coded by an RNA according to the Invention by Means of Western Blotting:
(45) The expressed antibodies from the supernatant of cells which were transfected with a modified mRNA which codes for an antibody as described above were separated by means of a polyacrylamide gel electrophoresis and then transferred to a membrane. After incubation with anti-His tag antibody and a second antibody coupled to horseradish peroxidase, the antibody expressed was detected by means of chemoluminescence.
(46) 1.8 Tumour Model:
(47) SKOV-3 cells were injected subcutaneously into BALB/c mice. Within the following 28 days, eight portions of 10 μg of a modified mRNA which codes for an antibody as described above were injected into the tail vein of the mice. The tumour growth was monitored over a period of 5 weeks.
2. Example
(48) 2.1. Cell Lines
(49) RNA-based expression of humanised antibodies was done in either CHO-K1 or BHK-21 cells. The tumour cell lines BT-474, A-431 and Raji strongly expressing HER2, EGFR and CD20, respectively, were used to record antibody levels. All cell lines except CHO were maintained in RPMI supplemented with FCS and glutamine according to the supplier's information. CHO cells were grown in Ham's F12 supplemented with 10% FCS. All cell lines were obtained from the German collection of cell cultures (DSMZ).
(50) 2.2. Antibody Expression
(51) Various amounts of antibody-RNA (G/C enriched as defined by
(52) 2.3. Western Blot Analysis
(53) In order to detect translation of transfected RNA, proteins from either cell culture supernatants or cell lysates were separated by a 12% SDS-PAGE and blotted onto a nitrocellulose membrane. Humanised antibodies Herceptin (Roche), Erbitux (Merck KGAA), and Mabthera=Rituxan (Roche) were used as controls. After blotting was completed, membranes were consecutively incubated with biotinylated goat anti-human IgG (Dianova), streptavidin coupled to horseradish peroxidase (BD), and a chemiluminescent substrate (SuperSignal West Pico, Pierce). Staining was detected with a Fuji LAS-1000 chemiluminescence camera.
(54) 2.4. FACS Analysis
(55) 200.000 target cells expressing the respective antigen were incubated with either control antibodies (Herceptin, Erbitux, Mabthera) or cell culture supernatants. For detection of bound antibodies, cells were stained with biotinylated goat anti-human IgG (Dianova) and PE-labelled streptavidin (Invitrogen). Cells were analysed on a FACSCalibur (BD).