System and method for dynamic multiple contrast enhanced, magnetic resonance fingerprinting (DMCE-MRF)
11442127 · 2022-09-13
Assignee
Inventors
- Chris Flask (Cleveland, OH, US)
- Christian Anderson (Cleveland, OH, US)
- Xin Yu (Cleveland, OH, US)
- Nicole Steinmetz (Cleveland, OH, US)
- Mark A. Griswold (Cleveland, OH, US)
- Susann Brady-Kalnay (Cleveland, OH, US)
Cpc classification
G01R33/5608
PHYSICS
G01R33/5602
PHYSICS
G01R33/50
PHYSICS
A61K49/101
HUMAN NECESSITIES
A61B5/055
HUMAN NECESSITIES
G06T2207/10096
PHYSICS
A61B5/7289
HUMAN NECESSITIES
G01R33/4828
PHYSICS
G01R33/5601
PHYSICS
G01R33/5635
PHYSICS
International classification
G01R33/50
PHYSICS
G01R33/56
PHYSICS
A61B5/055
HUMAN NECESSITIES
Abstract
The present disclosure provides a method of DDCE-MRF. The method can include: a) introducing two or more contrast agents to a region of interest (ROI) of a subject, the two or more contrast agents having different relaxivities; b) measuring a T1 relaxation time and a T2 relaxation time for locations within the ROI using magnetic resonance fingerprinting (MRF); c) determining, using equations that relate the different relaxivities, the T1 relaxation time, the T2 relaxation time, and concentrations of the two or more contrast agents, the concentrations of the two or more contrast agents for each of the locations within the ROI; and d) producing an image depicting the ROI based, at least in part, on the concentrations of the two or more contrast agents.
Claims
1. A method of dynamic, contrast-enhanced, magnetic resonance fingerprinting (MRF), the method including steps comprising: a) acquiring, with a magnetic resonance imaging (MRI) system using a series of variable sequence blocks that cause one or more resonance species in a region of interest (ROI) of a subject having received a dose of two or more contrast agents having at least two different relaxivities to simultaneously produce individual magnetic resonance signals, the simultaneously produced individual magnetic resonance signals as MRF signal evolutions; b) comparing, using a computer system, the acquired MRF signal evolutions to a dictionary of signal evolutions to determine quantitative values for two or more parameters of the one or more resonant species based, at least in part, on matching the acquired MRF signal evolutions to a set of known signal evolutions stored in the dictionary, wherein the two or more parameters include at least a T1 relaxation time and a T2 relaxation time; c) determining, using the computer system and a computer model that relates the different relaxivities, the T1 relaxation time, the T2 relaxation time, and concentrations of the two or more contrast agents, the concentrations of the two or more contrast agents; d) producing an image depicting the ROI, at least in part, based on the concentrations of the two or more contrast agents; and wherein the computer model includes the form:
1/T1=1/T1.sub.0+r1.sub.A×[A]+r1.sub.B×[B] and 1/T2=1/T2.sub.0+r2.sub.A×[A]+r2.sub.B×[B]; wherein T1.sub.0 is a pre-contrast T1 relaxation value of tissue in the ROI, T2.sub.0 is a pre-contrast T2 relaxation value of tissue in the ROI; T1 is a post-contrast T1 relaxation value of tissue in the ROI, T2 is a post-contrast T2 relaxation value; [A] is a concentration of a first of the two or more contrast agents; r1.sub.A is an r1 relaxivity of first of the two or more contrast agents; r2.sub.A is an r2 relaxivity of first of the two or more contrast agents; [B] is a concentration of a second of the two or more contrast agents; r1.sub.B is an r1 relaxivity of second of the two or more contrast agents; and r2.sub.B is a r2 relaxivity of second of the two or more contrast agents.
2. The method of claim 1 wherein the image indicates contrast attributable to two different tissue compartments in the ROI or two different molecular targets in the subject.
3. The method of claim 1 wherein step a) includes performing a fast imaging with steady-state free precession (FISP) acquisition kernel.
4. The method of claim 3 wherein performing the FISP acquisition kernel includes sampling k-space using spiral trajectories.
5. A system comprising: a magnet system configured to generate a polarizing magnetic field about at least a portion of a subject; a magnetic gradient system including a plurality of magnetic gradient coils configured to apply at least one magnetic gradient field to the polarizing magnetic field; a radio frequency (RF) system configured to apply an RF field to the subject and to receive magnetic resonance signals from the subject using a coil array; a computer system programmed to: control the magnetic gradient system and the RF system to perform a series of variable sequence blocks that cause one or more resonance species in a region of interest (ROI) of a subject having received a dose of two or more contrast agents having at least two different relaxivities to simultaneously produce individual magnetic resonance signals to acquire the simultaneously produced individual magnetic resonance signals as MRF signal evolutions; compare the acquired MRF signal evolutions to a dictionary of signal evolutions to determine quantitative values for two or more parameters of the one or more resonant species based, at least in part, on matching the acquired MRF signal evolutions to a set of known signal evolutions stored in the dictionary, wherein the two or more parameters include at least a T1 relaxation time and a T2 relaxation time; determine, using a model that relates the different relaxivities, the T1 relaxation time, the T2 relaxation time, and concentrations of the two or more contrast agents, the concentrations of the two or more contrast agents; a display configured to display at least one image of the ROI showing the concentrations of the two or more contrast agents; and wherein the computer model includes the form:
1/T1=1/T1.sub.0+r1.sub.A×[A]+r1.sub.B×[B] and 1/T2=1/T2.sub.0+r2.sub.A×[A]+r2.sub.B×[B]; wherein T1.sub.0 is a pre-contrast T1 relaxation value of tissue in the ROI, T2.sub.0 is a pre-contrast T2 relaxation value of tissue in the ROI; T1 is a post-contrast T1 relaxation value of tissue in the ROI, T2 is a post-contrast T2 relaxation value; [A] is a concentration of a first of the two or more contrast agents; r1.sub.A is an r1 relaxivity of first of the two or more contrast agents; r2.sub.A is an r2 relaxivity of first of the two or more contrast agents; [B] is a concentration of a second of the two or more contrast agents; r1.sub.B is an r1 relaxivity of second of the two or more contrast agents; and r2.sub.B is a r2 relaxivity of second of the two or more contrast agents.
6. The system of claim 5 wherein the at least one image is generated by the computer system to indicate contrast attributable to two different tissue compartments in the ROI or two different molecular targets in the subject.
7. The system of claim 5 wherein the computer system is further configured to perform a fast imaging with steady-state free precession (FISP) acquisition kernel to acquire the signal evolutions.
8. The system of claim 7 wherein performing the FISP acquisition kernel includes sampling k-space using spiral trajectories.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
(8) Referring particularly now to
(9) The pulse sequence server 110 functions in response to instructions provided by the operator workstation 102 to operate a gradient system 118 and a radiofrequency (“RF”) system 120. Gradient waveforms for performing a prescribed scan are produced and applied to the gradient system 118, which then excites gradient coils in an assembly 122 to produce the magnetic field gradients G.sub.x, G.sub.y, and G.sub.z that are used for spatially encoding magnetic resonance signals. The gradient coil assembly 122 forms part of a magnet assembly 124 that includes a polarizing magnet 126 and a whole-body RF coil 128.
(10) RF waveforms are applied by the RF system 120 to the RF coil 128, or a separate local coil to perform the prescribed magnetic resonance pulse sequence. Responsive magnetic resonance signals detected by the RF coil 128, or a separate local coil, are received by the RF system 120. The responsive magnetic resonance signals may be amplified, demodulated, filtered, and digitized under direction of commands produced by the pulse sequence server 110. The RF system 120 includes an RF transmitter for producing a wide variety of RF pulses used in MRI pulse sequences. The RF transmitter is responsive to the prescribed scan and direction from the pulse sequence server 110 to produce RF pulses of the desired frequency, phase, and pulse amplitude waveform. The generated RF pulses may be applied to the whole-body RF coil 128 or to one or more local coils or coil arrays.
(11) The RF system 120 also includes one or more RF receiver channels. An RF receiver channel includes an RF preamplifier that amplifies the magnetic resonance signal received by the coil 128 to which it is connected, and a detector that detects and digitizes the I and Q quadrature components of the received magnetic resonance signal. The magnitude of the received magnetic resonance signal may, therefore, be determined at a sampled point by the square root of the sum of the squares of the I and Q components:
M=√{square root over (I.sup.2+Q.sup.2)} (4);
(12) and the phase of the received magnetic resonance signal may also be determined according to the following relationship:
(13)
(14) The pulse sequence server 110 may receive patient data from a physiological acquisition controller 130. By way of example, the physiological acquisition controller 130 may receive signals from a number of different sensors connected to the patient, including electrocardiograph (“ECG”) signals from electrodes, or respiratory signals from a respiratory bellows or other respiratory monitoring devices. These signals may be used by the pulse sequence server 110 to synchronize, or “gate,” the performance of the scan with the subject's heart beat or respiration.
(15) The pulse sequence server 110 may also connect to a scan room interface circuit 132 that receives signals from various sensors associated with the condition of the patient and the magnet system. Through the scan room interface circuit 132, a patient positioning system 134 can receive commands to move the patient to desired positions during the scan.
(16) The digitized magnetic resonance signal samples produced by the RF system 120 are received by the data acquisition server 112. The data acquisition server 112 operates in response to instructions downloaded from the operator workstation 102 to receive the real-time magnetic resonance data and provide buffer storage, so that data is not lost by data overrun. In some scans, the data acquisition server 112 passes the acquired magnetic resonance data to the data processor server 114. In scans that require information derived from acquired magnetic resonance data to control the further performance of the scan, the data acquisition server 112 may be programmed to produce such information and convey it to the pulse sequence server 110. For example, during pre-scans, magnetic resonance data may be acquired and used to calibrate the pulse sequence performed by the pulse sequence server 110. As another example, navigator signals may be acquired and used to adjust the operating parameters of the RF system 120 or the gradient system 118, or to control the view order in which k-space is sampled. In still another example, the data acquisition server 112 may also process magnetic resonance signals used to detect the arrival of a contrast agent in a magnetic resonance angiography (“MRA”) scan. For example, the data acquisition server 112 may acquire magnetic resonance data and processes it in real-time to produce information that is used to control the scan.
(17) The data processing server 114 receives magnetic resonance data from the data acquisition server 112 and processes the magnetic resonance data in accordance with instructions provided by the operator workstation 102. Such processing may include, for example, reconstructing two-dimensional or three-dimensional images by performing a Fourier transformation of raw k-space data, performing other image reconstruction algorithms (e.g., iterative or backprojection reconstruction algorithms), applying filters to raw k-space data or to reconstructed images, generating functional magnetic resonance images, or calculating motion or flow images.
(18) Images reconstructed by the data processing server 114 are conveyed back to the operator workstation 102 for storage. Real-time images may be stored in a data base memory cache, from which they may be output to operator display 102 or a display 136. Batch mode images or selected real time images may be stored in a host database on disc storage 138. When such images have been reconstructed and transferred to storage, the data processing server 114 may notify the data store server 116 on the operator workstation 102. The operator workstation 102 may be used by an operator to archive the images, produce films, or send the images via a network to other facilities.
(19) The MRI system 100 may also include one or more networked workstations 142. For example, a networked workstation 142 may include a display 144, one or more input devices 146 (e.g., a keyboard, a mouse), and a processor 148. The networked workstation 142 may be located within the same facility as the operator workstation 102, or in a different facility, such as a different healthcare institution or clinic.
(20) The networked workstation 142 may gain remote access to the data processing server 114 or data store server 116 via the communication system 140. Accordingly, multiple networked workstations 142 may have access to the data processing server 114 and the data store server 116. In this manner, magnetic resonance data, reconstructed images, or other data may be exchanged between the data processing server 114 or the data store server 116 and the networked workstations 142, such that the data or images may be remotely processed by a networked workstation 142.
(21) As will be described, the present disclosure recognizes that magnetic resonance fingerprinting (“MRF”) can be used to perform dynamic, multi-contrast-enhanced studies to overcome the shortcomings of attempts to perform dynamic, dual-contrast-enhanced studies using traditional MRI techniques. Furthermore, dynamic, multi-contrast-enhanced MRF in accordance with the present disclosure can be performed using an MRI or NMR system, such as described above with respect to
(22) MRF is a technique that facilitates mapping of tissue or other material properties based on random or pseudorandom measurements of the subject or object being imaged. Characterizing tissue species using nuclear magnetic resonance (“NMR”) can include identifying different properties of a resonant species (e.g., T1 spin-lattice relaxation, T2 spin-spin relaxation, proton density). Other properties like tissue types and super-position of attributes can also be identified using NMR signals. These properties and others may be identified simultaneously using MRF, which is described, as one example, by D. Ma, et al., in “Magnetic Resonance Fingerprinting,” Nature, 2013; 495(7440):187-192.
(23) In particular, MRF can be conceptualized as employing a series of varied “sequence blocks” that simultaneously produce different signal evolutions in different “resonant species” to which the RF is applied. The term “resonant species,” as used herein, refers to a material, such as water, fat, bone, muscle, soft tissue, and the like, that can be made to resonate using NMR. By way of illustration, when radio frequency (“RF”) energy is applied to a volume that has both bone and muscle tissue, then both the bone and muscle tissue will produce a NMR signal; however, the “bone signal” represents a first resonant species and the “muscle signal” represents a second resonant species, and thus the two signals will be different. These different signals from different species can be collected simultaneously over a period of time to collect an overall “signal evolution” for the volume.
(24) The random or pseudorandom measurements obtained in MRF techniques are achieved by varying the acquisition parameters from one repetition time (“TR”) period to the next, which creates a time series of signals with varying contrast. Examples of acquisition parameters that can be varied include flip angle (“FA”), RF pulse phase, TR, echo time (“TE”), and sampling patterns, such as by modifying one or more readout encoding gradients. The acquisition parameters are varied in a random manner, pseudorandom manner, or other manner that results in signals from different materials or tissues to be spatially incoherent, temporally incoherent, or both. For example, in some instances, the acquisition parameters can be varied according to a non-random or non-pseudorandom pattern that otherwise results in signals from different materials or tissues to be spatially incoherent, temporally incoherent, or both.
(25) From these measurements, which as mentioned above may be random or pseudorandom, or may contain signals from different materials or tissues that are spatially incoherent, temporally incoherent, or both, MRF processes can be designed to map any of a wide variety of parameters. Examples of such parameters that can be mapped may include, but are not limited to, longitudinal relaxation time (T.sub.1), transverse relaxation time (T.sub.2), main or static magnetic field map (B.sub.0), and proton density (φ. MRF is generally described in U.S. Pat. No. 8,723,518 and Published U.S. Patent Application No. 2015/0301141, each of which is incorporated herein by reference in its entirety.
(26) The data acquired with MRF techniques are compared with a dictionary of signal models, or templates, that have been generated for different acquisition parameters from magnetic resonance signal models, such as Bloch equation-based physics simulations. This comparison allows estimation of the physical parameters, such as those mentioned above. As an example, the comparison of the acquired signals to a dictionary can be performed using any suitable matching or pattern recognition technique. The parameters for the tissue or other material in a given voxel are estimated to be the values that provide the best signal template matching. For instance, the comparison of the acquired data with the dictionary can result in the selection of a signal vector, which may constitute a weighted combination of signal vectors, from the dictionary that best corresponds to the observed signal evolution. The selected signal vector includes values for multiple different quantitative parameters, which can be extracted from the selected signal vector and used to generate the relevant quantitative parameter maps.
(27) The stored signals and information derived from reference signal evolutions may be associated with a potentially very large data space. The data space for signal evolutions can be partially described by:
(28)
(29) where SE is a signal evolution; N.sub.S is a number of spins; N.sub.A is a number of sequence blocks; N.sub.RF is a number of RF pulses in a sequence block; α is a flip angle; ϕ is a phase angle; R.sub.i(α) is a rotation due to off resonance; R.sub.RF.sub.
(30) While E.sub.i(T.sub.1,T.sub.2,D) is provided as an example, in different situations, the decay term, E.sub.i(T.sub.1,T.sub.2,D), may also include additional terms, E.sub.i(T.sub.1,T.sub.2,D,K) or may include fewer terms, such as by not including the diffusion relaxation, as E.sub.i(T.sub.1,T.sub.2) or E.sub.i(T.sub.1,T.sub.2,K). Also, the summation on “j” could be replace by a product on “j”.
(31) The dictionary may store signals described by,
S.sub.i=R.sub.iE.sub.i(S.sub.i-1) (3);
(32) where S.sub.0 is the default, or equilibrium, magnetization; S.sub.i is a vector that represents the different components of magnetization, M.sub.x, M.sub.y, and M.sub.z during the i.sup.th acquisition block; R.sub.i is a combination of rotational effects that occur during the i.sup.th acquisition block; and E.sub.i is a combination of effects that alter the amount of magnetization in the different states for the i.sup.th acquisition block. In this situation, the signal at the i.sup.th acquisition block is a function of the previous signal at acquisition block (i.e., the (i−1).sup.th acquisition block). Additionally or alternatively, the dictionary may store signals as a function of the current relaxation and rotation effects and of previous acquisitions. Additionally or alternatively, the dictionary may store signals such that voxels have multiple resonant species or spins, and the effects may be different for every spin within a voxel. Further still, the dictionary may store signals such that voxels may have multiple resonant species or spins, and the effects may be different for spins within a voxel, and thus the signal may be a function of the effects and the previous acquisition blocks.
(33) Referring to
(34) As further described above, MRF (MRF, Nature 2013) is a nuclear magnetic resonance (NMR) technique that has been shown in human imaging studies to simultaneously generate quantitative maps. The MRF techniques use variation in the MRF acquisition parameters using a series of variable sequence blocks to elicit signal evolutions that can be examined a pattern-matching process to generate robust quantitative maps, including quantitative T1 and T2 estimates with inherent resistant to motion artifacts.
(35) With this in mind, the above-described process has been implemented using a fast imaging with steady-state free precession (FISP) acquisition kernel to control banding artifacts from True FISP MRI acquisitions that are prevalent on high field MRI scanners. Similar to previous clinical MRF studies, results showed that undersampled spiral trajectories for sampling k-space can be used to obtain dynamic MRF-based T1 and T2 relaxation times estimates in animal models.
(36) Using the methods described in the present disclosure, T1 and T2 relaxation times can be dynamically and simultaneously acquired, which enables the detection of two different proton MRI contrast agents (i.e., having different relaxivities, r1 and r2) at the same time. For molecular imaging studies, this adaptable dynamic dual contrast enhanced MRF (DDCE-MRF) approach provides the ability to specifically assess two different tissue compartments or molecular targets in vivo simultaneously using a single MRF acquisition. In a similar fashion, the multiple MRI assessments of T1 and T2 relaxation times allows for the quantification of in vivo assessments of correlation times for specific imaging agents.
(37) In one non-limiting example of an implementation of the above-described technique, an MRF acquisition such as described above was performed to rapidly (˜10 seconds/imaging slice) and simultaneously generate multiple imaging parameters, including T1 and T2 relaxation time maps. The MRF methodology dynamically acquired ˜1000 images of the same imaging slice in ˜10 seconds. This set of 1000 images had time-varying tissue contrast forming signal evolutions that were elicited by the variable sequence blocks with varied MRF acquisition parameters. Within those time-varying tissue contrast were varying T1 and T2 values for the particular tissue. Instead of Fourier transforms used in conventional MRI, the MRF methodology used a pre-calculated dictionary of known signal evolutions to match the acquired signal evolution profiles for each image pixel to a “best-matching” profile in the MRF dictionary. In the original MRF publication (Nature, 2013), the MRF matching process was shown to be resistant to patient motion. In an example study, MRF results (T1 and T2 maps) were obtained in the PCK rat model of Autosomal Recessive Polycystic Kidney Disease (
(38)
(39) As described above, detection of multiple MRI contrast agents can be achieved using MR agents with different MRI-observable nuclei (e.g., .sup.1H and .sup.19F) where the multinuclear MRI acquisitions are interleaved. Unfortunately, detecting non-proton-based contrast agents with traditional MRI imaging techniques is time-consuming and suffers from significant reductions in sensitivity. Again, multinuclear MRI capabilities adds significant cost for specialized MRI hardware and are generally not available on a large majority of modern human MRI scanners. The systems and methods of the present disclosure can be performed using, for example, the system of
(40) As also described above, a second option to detecting multiple contrast agents in vivo would be using two .sup.1H MRI contrast agents that have different relaxivities. Unfortunately, as described above, a key limitation in all previous contrast-enhanced studies relying on traditional MRI imaging techniques is that only one proton-based contrast agent can be detected at a time because all agents have an impact on both T1 and T2 relaxation times, as shown in Equations 1A and 1B. If agents A and B are injected simultaneously, the impact of these agents could be modeled as shown in Equations 6A and 6B:
1/T1=1/T1.sub.0+r1.sub.A×[A]+r1.sub.B×[B] (6A);
1/T2=1/T2.sub.0+r2.sub.A×[A]+r2.sub.B×[B] (6B).
(41) These equations may be valid within specific concentration limits: 1) low enough concentration to limit interactions and avoid T1/T2 saturation; 2) high enough concentration to be individually detected. These equations also assume minimal interaction between the two agents as these would be simultaneously injected as a mixture. Within these constraints, measuring both T1 and T2 relaxation times dynamically, as can be achieved using the systems and methods described herein, these two equations can be analytically solved for both [A] and [B]. As a result, studies the systems and methods of the present disclosure allow for simultaneously measuring both the targeted and untargeted control agents (as in
(42) The systems and methods of the present disclosure overcome the issue presented by this temporal mismatch and associated errors by allowing for simultaneous and rapid assessment of T1 and T2 relaxation times. Specifically,
(43) Thus,
(44) Notably, relative to Equations 1A and 1B, there is only one unknown value if r1.sub.A and r1.sub.B are predetermined. These relaxivities can be measured in vivo, ex vivo, and in vitro. Importantly, in vivo relaxivities are significantly different from in vitro values because the in vivo correlation times are altered through tissue-agent interactions. The ability of the systems and methods of the present disclosure to measure T1 and T2 simultaneously provides the ability to measure r1.sub.A and r2.sub.A efficiently in a variety of diseases. For example, a series of subjects can be injected with varying amounts of the contrast agent while dynamically acquiring the T1 and T2 maps of specific tissues of interest. The in vivo T1 and T2 assessments can be used to calculate the in vivo r1 and r2 relaxivities in the same subject (rather than two separate groups) to reduce the number of experiments and/or improved estimates.
(45) The present disclosure has described one or more preferred embodiments, and it should be appreciated that many equivalents, alternatives, variations, and modifications, aside from those expressly stated, are possible and within the scope of the invention.