Pumpless platform for high-throughput dynamic multicellular culture and chemosensitivity evaluation
11421194 · 2022-08-23
Assignee
- The Trustees Of The Stevens Institute Of Technology (Hoboken, NJ)
- HACKENSACK MERIDIAN HEALTH CENTER FOR DISCOVERY AND INNOVATION (Nutley, NJ, US)
Inventors
Cpc classification
C12N5/0654
CHEMISTRY; METALLURGY
C12N5/0694
CHEMISTRY; METALLURGY
B01L2400/084
PERFORMING OPERATIONS; TRANSPORTING
C12N2527/00
CHEMISTRY; METALLURGY
B01L2300/0829
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502707
PERFORMING OPERATIONS; TRANSPORTING
C12N5/0062
CHEMISTRY; METALLURGY
C12M21/08
CHEMISTRY; METALLURGY
B01L2300/087
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502761
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502746
PERFORMING OPERATIONS; TRANSPORTING
International classification
C12M3/00
CHEMISTRY; METALLURGY
G01N33/50
PHYSICS
C12N5/00
CHEMISTRY; METALLURGY
Abstract
The described invention provides an ex vivo dynamic multiple myeloma cancer niche contained in a pumpless perfusion culture device. The dynamic multiple myeloma cancer niche includes (a) a three-dimensional tissue construct containing a dynamic ex vivo bone marrow niche, which contains a mineralized bone-like tissue containing viable osteoblasts self-organized into cohesive multiple cell layers and an extracellular matrix secreted by the viable adherent osteoblasts; and a microenvironment dynamically perfused by nutrients and dissolved gas molecules; and (b) human myeloma cells seeded from a biospecimen composition comprising mononuclear cells and the multiple myeloma cells. The human myeloma cells are in contact with osteoblasts of the bone marrow niche, and the viability of the human myeloma cells is maintained by the multiple myeloma cancer niche.
Claims
1. An in vitro multiwell plate-based pumpless perfusion culture device comprising, from top to bottom: (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber; (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber; (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer; (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer; (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer; (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device; (vii) a rocking platform for holding the multi-well plate, characterized by rocking speed and an adjustable rocking/tilt angle; wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well; wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer; wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate hydrostatic pressure differential between the wells; wherein the cell seeding port well is adapted to receive a biological sample of cells; wherein an intermediate layer is disposed between the second micropatterned PSA layer and the third micropatterned PSA layer, the intermediate layer including a first polymer membrane effective to cover the inlet well and to control the flow rate of medium in the culture chamber, and a second polymer membrane different from the first polymer membrane, disposed adjacent to the first polymer membrane and effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber.
2. The culture device according to claim 1, wherein the polymer layer comprises polydimethylsiloxane (PDMS).
3. The culture device according to claim 1, wherein the first polymer membrane comprises polycarbonate (PCTE).
4. The culture device according to claim 3, wherein the first polymer membrane is characterized by a diameter of about 0.4 μm, a porosity of about 10%, and a thickness of about 10 μm.
5. The culture device according to claim 1, wherein the second polymer membrane comprises polyester.
6. The culture device according to claim 5, wherein the second polymer membrane is characterized by a diameter of about 0.4 μm and a thickness of about 12 μm.
7. The culture device according to claim 1, wherein the cell chamber well is connected to the cell seeding port well by a microchannel.
8. The culture device according to claim 1, wherein the rocking platform is configured to maintain a medium flow rate of about 0.46 to about 5 μL/min.
9. The culture device according to claim 1, wherein the device is configured to maintain a flow-induced shear stress of about 0.4 mPa.
10. An ex vivo multiple myeloma cancer niche contained in a device, in which flow of minute amounts of liquids or dissolved gas molecules, is controlled by microfluidics (a microfluidic device) comprising: (a) an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (a bone marrow niche) comprising viable osteoblasts seeded on a surface of the microfluidic device and cultured to form 3D nodular structures that comprise a 3D bone-like tissue, the 3D bone-like tissue being characterized by an extracellular matrix secreted by the viable osteoblasts; and (b) a multiple myeloma tumor biospecimen comprising viable human multiple myeloma cells; the microfluidic device comprising, from top to bottom: (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber; (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber; (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer; (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer; (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer; (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device; (vii) a rocking platform for holding the multi-well plate, characterized by rocking speed and an adjustable rocking/tilt angle; wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well; wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer; wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate hydrostatic pressure differential between the wells; wherein the cell seeding port well is adapted to receive a biological sample of cells; wherein an intermediate layer is disposed between the second micropatterned PSA layer and the third micropatterned PSA layer, the intermediate layer including a first polymer membrane effective to cover the inlet well and to control the flow rate of medium in the culture chamber, and a second polymer membrane different from the first polymer membrane, disposed adjacent to the first polymer membrane and effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber; wherein the microfluidic device is effective to control flow of minute amounts of the liquids, nutrients and dissolved gas molecules in the multiple myeloma cancer niche; wherein the ex vivo multiple myeloma cancer niche is responsive to changing conditions of perfusion of the ex vivo multiple myeloma cancer niche by the minute amounts of liquids, nutrients and dissolved gas molecules in the microfluidic device; and wherein formation of an ex vivo multiple myeloma microenvironment in the microfluidic device is effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche in vivo and to maintain viability of the multiple myeloma cells in the multiple myeloma cancer niche in the microfluidic device ex vivo.
11. The ex vivo multiple myeloma cancer niche contained in the microfluidic device according to claim 10, wherein the biospecimen comprising human multiple myeloma cells further comprises human plasma autologous to the human multiple myeloma cells.
12. The ex vivo multiple myeloma cancer niche contained in a microfluidic device according to claim 10, wherein the microenvironment perfused by nutrients and dissolved gas molecules of the ex vivo bone marrow niche is effective for propagation of the human myeloma cells.
13. The ex vivo multiple myeloma cancer niche contained in a microfluidic device according to claim 10, wherein the multiple myeloma cancer niche further comprises osteoblast-secreted and multiple myeloma cell-secreted soluble cytokines and growth factors.
14. The ex vivo multiple myeloma cancer niche according to claim 10, wherein, (a) the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche; or (b) the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche via cell-cell interaction.
15. The ex vivo multiple myeloma cancer niche according to claim 10, wherein a. the human multiple myeloma cells are cellular components of a bone marrow aspirate, of peripheral blood, or of a core biopsy; or b. the ex vivo multiple myeloma cancer niche is effective for propagation of the human multiple myeloma cells for at least 4 days, or c. the ex vivo multiple myeloma cancer niche is effective to maintain the viability and proliferative capacity of patient-derived multiple myeloma cells for at least 3 weeks, or the sample of human multiple myeloma cells added to the bone marrow niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells; or d. propagation of the multiple myeloma cells is effective to produce deterioration of the 3D ossified tissue of the bone marrow niche.
16. A method for preparing an ex vivo multiple myeloma cancer niche contained in a device in which flow of minute amounts of liquids or dissolved gas molecules is controlled by microfluidics (a microfluidic device), the microfluidic device comprising, from top to bottom: (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber; (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber; (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer; (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer; (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer; (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device; (vii) a rocking platform for holding the multi-well plate, characterized by rocking speed and an adjustable rocking/tilt angle; wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well; wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer; wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate hydrostatic pressure differential between the wells; wherein the cell seeding port well is adapted to receive a biological sample of cells; wherein an intermediate layer is disposed between the second micropatterned PSA layer and the third micropatterned PSA layer, the intermediate layer including a first polymer membrane effective to cover the inlet well and to control the flow rate of medium in the culture chamber, and a second polymer membrane different from the first polymer membrane, disposed adjacent to the first polymer membrane and effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber; the method comprising: (a) constructing an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (a bone marrow niche) in the microfluidic device by: (i) seeding a surface of the microfluidic device with viable osteoblasts; and (ii) culturing the cells to form 3D nodular structures that comprise a 3D bone-like tissue; the 3D bone-like tissue being characterized by an extracellular matrix secreted by the viable adherent osteoblasts; (b) preparing a multiple myeloma tumor biospecimen composition comprising viable human multiple myeloma cells from a subject and plasma autologous to the subject; and (c) seeding the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules with the multiple myeloma tumor biospecimen, and forming an ex vivo microenvironment in the microfluidics device effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche in vivo and to maintain viability of the multiple myeloma cells in the multiple myeloma cancer niche in the microfluidics device ex vivo; wherein the microfluidic device is effective to control flow of minute amounts of the liquids, nutrients and dissolved gas molecules in the multiple myeloma cancer niche; wherein the ex vivo multiple myeloma cancer niche in the microfluidic device is responsive to changing conditions of perfusion of the ex vivo multiple myeloma cancer niche by the minute amounts of liquids, nutrients and dissolved gas molecules in the microfluidics device.
17. The method for preparing an ex vivo multiple myeloma cancer niche according to claim 16, wherein a. the multiple myeloma cancer niche further comprises osteoblast-secreted and multiple myeloma cell-secreted soluble cytokines and growth factors; or b. the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche; or c. the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche via cell-cell interaction; or d. the human multiple myeloma cells are cellular components of a bone marrow aspirate, of peripheral blood, or of a core biopsy; or e. the ex vivo multiple myeloma cancer niche is suitable for propagation of the human multiple myeloma cells for at least 4 days; or f. the ex vivo multiple myeloma cancer niche is effective to maintain the viability and proliferative capacity of patient-derived MM cells for at least 3 weeks; or g. the sample of human multiple myeloma cells added to the bone marrow niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells; or h. propagation of the multiple myeloma cells is effective to produce deterioration of the 3D ossified tissue of the bone marrow niche.
18. A method for assessing chemotherapeutic efficacy of a test chemotherapeutic agent on viable human multiple myeloma cells seeded in an ex vivo microenvironment effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche and to maintain viability of the myeloma cells (a multiple myeloma cancer niche) obtained from a subject comprising: (a) preparing an in vitro microfluidic device comprising, from top to bottom: (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber; (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber; (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer; (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer; (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer; (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device; (vii) a rocking platform for holding the multi-well plate, characterized by a rocking speed and an adjustable rocking/tilt angle; wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well; wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer; wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate hydrostatic pressure differential between the wells; wherein the cell seeding port well is adapted to receive a biological sample of cells; wherein an intermediate layer is disposed between the second micropatterned PSA layer and the third micropatterned PSA layer, the intermediate layer including a first polymer membrane effective to cover the inlet well and to control the flow rate of medium in the culture chamber, and a second polymer membrane different from the first polymer membrane, disposed adjacent to the first polymer membrane and effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber; (b) constructing an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (a bone marrow niche) by (1) seeding a surface of the culture chamber of the in vitro microfluidic device of (a) with a population of cells comprising osteoblasts; (2) culturing the cells with a culture medium through the channel region for a time effective for the cells to form a confluent layer on the bottom surface of the channel, to then form multiple cell layers and to then form 3D nodular structures that comprise a 3D bone-like tissue; the 3D bone like tissue being characterized by a mineralized bone-like tissue comprising (a) viable osteoblasts self-organized into cohesive multiple cell layers and (b) an extracellular matrix secreted by the viable adherent osteoblasts; (c) preparing a multiple myeloma tumor biospecimen composition by: (1) acquiring a multiple myeloma tumor biospecimen from the subject, wherein the biospecimen comprises viable multiple myeloma cells; and (2) adding plasma autologous to the subject to the viable multiple myeloma cells; (3) bringing the biospecimen composition of (c)(2) comprising viable multiple myeloma cells in contact with the osteoblasts of the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules to seed the ex vivo bone marrow microenvironment with the viable multiple myeloma cells, the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules and the seeded multiple myeloma cells in contact with the osteoblasts of the ex vivo bone marrow microenvironment forming an ex vivo microenvironment effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche and to maintain viability of the human multiple myeloma cells (a multiple myeloma cancer niche); and (d) testing chemotherapeutic efficacy of a chemotherapeutic agent on the viable human multiple myeloma cells maintained in the ex vivo multiple myeloma cancer niche of (c)(3) in the test chamber of (a) by (1) contacting the ex vivo multiple myeloma cancer niche comprising viable human myeloma cells with a test chemotherapeutic agent; and (2) comparing at least one of viability and level of apoptosis of the multiple myeloma cells in the multiple myeloma cancer niche in the presence of the test chemotherapeutic agent to an untreated control; and (e) initiating therapy to treat the multiple myeloma in the patient with the test chemotherapeutic agent if the test chemotherapeutic agent is effective to significantly (P<0.05) reduce viability of the multiple myeloma cells or to increase apoptosis of the multiple myeloma cells, compared to the untreated control.
19. The method according to claim 18 wherein the chemotherapeutic agent is selected from the group consisting of an alkylating agent, an antimetabolite, a natural product, a hormone, a biologic, a kinase inhibitor, a platinum coordination complex, an EDTA derivative, a platelet-reducing agent, a retinoid and a histone deacetylase inhibitor.
20. The method according to claim 18, wherein the chemotherapeutic agent is selected from the group consisting of an immunomodulatory drug, a proteasome inhibitor, a bisphosphonate, an immunomodulator or checkpoint inhibitor, a cancer vaccine, an adoptive cell therapy, an oncolytic virus therapy, and a targeted antibody.
21. The method according to claim 20, wherein the immunomodulatory drug is Thalidomide, Lenalidomide, or Pomalidomide; or the proteasome inhibitor is Bortezomib; or the bisphosphonate is Pamidronate or zoledronic acid; or the immunomodulator or checkpoint inhibitor is a CTLA-4 inhibitor, an IL-2/IL-2R activator, a PD-1/PD-L1 inhibitor, or a TLR activator; or the cancer vaccine is effective to elicit an immune response to a target selected from a melanoma-associated antigen (MAGE), survivin, telomerase, a tumor-associated antigen (TAA), and WT1; or the adoptive cell therapy is a CAR T cell therapy, a natural killer cell (NK) therapy, or a tumor infiltrating lymphocytes (TIL) therapy, or, the adoptive cell therapy is effective to target BCMA, CD19, CD20, NY-ESO-1, or WT1; the oncolytic virus therapy uses a measles virus, a reovirus, or a vesicular stomatitis virus; or the targeted antibody is daratumumab or elotuzumab, or the targeted antibody is an antibody to BCMA, CD19, CD20, CD38, CD52, EGFR, HER2, or SLAMF7.
22. The method according to claim 18, wherein a. the multiple myeloma niche further comprises osteoblast-secreted and multiple myeloma cell-secreted soluble cytokines and growth factors; or b. the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche; or c. the multiple myeloma cells are adherent to osteoblasts of the bone marrow niche via cell-cell interactions; or d. the human multiple myeloma cells are cellular components of a bone marrow aspirate, of peripheral blood, or of a core biopsy; or e. the period of time for dynamic propagation of the human myeloma cells in the ex vivo dynamic multiple myeloma cancer niche is at least 4 days; or f. the sample of human multiple myeloma cells added to the bone marrow niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells.
23. The method according to claim 18, wherein propagation of the multiple myeloma cells in the ex vivo multiple myeloma cancer niche under conditions that mimic interstitial flow; shear stresses exerted by the interstitial flow on the cells; increased blood flow associated with tumor cell expansion, or a combination thereof is effective to produce deterioration of the 3D ossified tissue of the bone marrow niche.
24. The method according to claim 18, further comprising (a) cultivating the human myeloma cells in the multiple myeloma cancer niche to propagate the multiple myeloma cells for a period of time; or (b) testing chemotherapeutic efficacy of a chemotherapeutic agent on the viable human multiple myeloma cells maintained in the ex vivo multiple myeloma cancer niche of (c)(3) in the test chamber of (a) by contacting the ex vivo multiple myeloma cancer niche comprising viable human myeloma cells with a test chemotherapeutic agent under conditions that mimic interstitial flow; shear stresses exerted by the interstitial flow on the cells; increased blood flow associated with tumor cell expansion; or a combination thereof.
25. The method according to claim 24, wherein the multiple myeloma cancer niche is effective to maintain viability and proliferative capacity of the multiple myeloma cells for at least 3 weeks.
Description
BRIEF DESCRIPTION OF DRAWINGS
(1) The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
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DETAILED DESCRIPTION OF EMBODIMENTS
Definitions
(10) Various terms used throughout this specification shall have the definitions set out herein.
(11) The term “activation” or “lymphocyte activation” refers to stimulation of lymphocytes by specific antigens, nonspecific mitogens, or allogeneic cells resulting in synthesis of RNA, protein and DNA and production of lymphokines; it is followed by proliferation and differentiation of various effector and memory cells. For example, a mature B cell can be activated by an encounter with an antigen that expresses epitopes that are recognized by its cell surface immunoglobulin (Ig). The activation process may be a direct one, dependent on cross-linkage of membrane Ig molecules by the antigen (cross-linkage-dependent B cell activation) or an indirect one, occurring most efficiently in the context of an intimate interaction with a helper T cell (“cognate help process”). T-cell activation is dependent on the interaction of the TCR/CD3 complex with its cognate ligand, a peptide bound in the groove of a class I or class II MHC molecule. The molecular events set in motion by receptor engagement are complex. Among the earliest steps appears to be the activation of tyrosine kinases leading to the tyrosine phosphorylation of a set of substrates that control several signaling pathways. These include a set of adapter proteins that link the TCR to the ras pathway, phospholipase Cγ1, the tyrosine phosphorylation of which increases its catalytic activity and engages the inositol phospholipid metabolic pathway, leading to elevation of intracellular free calcium concentration and activation of protein kinase C, and a series of other enzymes that control cellular growth and differentiation. Full responsiveness of a T cell requires, in addition to receptor engagement, an accessory cell-delivered costimulatory activity, e.g., engagement of CD28 on the T cell by CD80 and/or CD86 on the antigen presenting cell (APC). The soluble product of an activated B lymphocyte is immmunoglobulins (antibodies). The soluble product of an activated T lymphocyte is lymphokines.
(12) The term “administering” as used herein means to give or apply. It includes in vivo administration, as well as administration directly to tissue ex vivo. Generally, compositions can be administered systemically either orally, buccally, parenterally, topically, by inhalation or insufflation (i.e., through the mouth or through the nose), or rectally in dosage unit formulations containing conventional nontoxic pharmaceutically acceptable carriers, adjuvants, and vehicles as desired, or can be locally administered by means such as, but not limited to, injection, implantation, grafting, or topical application.
(13) The term “allogeneic” as used herein refers to being genetically different although belonging to or obtained from the same species.
(14) The term “antigen” and its various grammatical forms refers to any substance that can stimulate the production of antibodies and can combine specifically with them. The term “antigenic determinant” or “epitope” as used herein refers to an antigenic site on a molecule.
(15) An “antiserum” is the liquid phase of blood recovered after clotting has taken place obtained from an immunized mammal, including humans.
(16) The terms “apoptosis” or “programmed cell death” refer to a highly regulated and active process that contributes to biologic homeostasis comprised of a series of biochemical events that lead to a variety of morphological changes, including blebbing, changes to the cell membrane, such as loss of membrane asymmetry and attachment, cell shrinkage, nuclear fragmentation, chromatin condensation, and chromosomal DNA fragmentation, without damaging the organism.
(17) Apoptotic cell death is induced by many different factors and involves numerous signaling pathways, some dependent on caspase proteases (a class of cysteine proteases) and others that are caspase independent. It can be triggered by many different cellular stimuli, including cell surface receptors, mitochondrial response to stress, and cytotoxic T cells, resulting in activation of apoptotic signaling pathways
(18) The caspases involved in apoptosis convey the apoptotic signal in a proteolytic cascade, with caspases cleaving and activating other caspases that then degrade other cellular targets that lead to cell death. The caspases at the upper end of the cascade include caspase-8 and caspase-9. Caspase-8 is the initial caspase involved in response to receptors with a death domain (DD) like Fas.
(19) Receptors in the TNF receptor family are associated with the induction of apoptosis, as well as inflammatory signaling. The Fas receptor (CD95) mediates apoptotic signaling by Fas-ligand expressed on the surface of other cells. The Fas-FasL interaction plays an important role in the immune system and lack of this system leads to autoimmunity, indicating that Fas-mediated apoptosis removes self-reactive lymphocytes. Fas signaling also is involved in immune surveillance to remove transformed cells and virus infected cells. Binding of Fas to oligimerized FasL on another cell activates apoptotic signaling through a cytoplasmic domain termed the death domain (DD) that interacts with signaling adaptors including FAF, FADD and DAX to activate the caspase proteolytic cascade. Caspase-8 and caspase-10 first are activated to then cleave and activate downstream caspases and a variety of cellular substrates that lead to cell death.
(20) Mitochondria participate in apoptotic signaling pathways through the release of mitochondrial proteins into the cytoplasm. Cytochrome c, a key protein in electron transport, is released from mitochondria in response to apoptotic signals, and activates Apaf-1, a protease released from mitochondria. Activated Apaf-1 activates caspase-9 and the rest of the caspase pathway. Smac/DIABLO is released from mitochondria and inhibits IAP proteins that normally interact with caspase-9 to inhibit apoptosis. Apoptosis regulation by Bcl-2 family proteins occurs as family members form complexes that enter the mitochondrial membrane, regulating the release of cytochrome c and other proteins. TNF family receptors that cause apoptosis directly activate the caspase cascade, but can also activate Bid, a Bcl-2 family member, which activates mitochondria-mediated apoptosis. Bax, another Bcl-2 family member, is activated by this pathway to localize to the mitochondrial membrane and increase its permeability, releasing cytochrome c and other mitochondrial proteins. Bcl-2 and Bcl-xL prevent pore formation, blocking apoptosis. Like cytochrome c, AIF (apoptosis-inducing factor) is a protein found in mitochondria that is released from mitochondria by apoptotic stimuli. While cytochrome c is linked to caspase-dependent apoptotic signaling, AIF release stimulates caspase-independent apoptosis, moving into the nucleus where it binds DNA. DNA binding by AIF stimulates chromatin condensation, and DNA fragmentation, perhaps through recruitment of nucleases.
(21) The mitochondrial stress pathway begins with the release of cytochrome c from mitochondria, which then interacts with Apaf-1, causing self-cleavage and activation of caspase-9. Caspase-3, -6 and -7 are downstream caspases that are activated by the upstream proteases and act themselves to cleave cellular targets.
(22) Granzyme B and perforin proteins released by cytotoxic T cells induce apoptosis in target cells, forming transmembrane pores, and triggering apoptosis, perhaps through cleavage of caspases, although caspase-independent mechanisms of Granzyme B mediated apoptosis have been suggested.
(23) Fragmentation of the nuclear genome by multiple nucleases activated by apoptotic signaling pathways to create a nucleosomal ladder is a cellular response characteristic of apoptosis. One nuclease involved in apoptosis is DNA fragmentation factor (DFF), a caspase-activated DNAse (CAD). DFF/CAD is activated through cleavage of its associated inhibitor ICAD by caspases proteases during apoptosis. DFF/CAD interacts with chromatin components such as topoisomerase II and histone H1 to condense chromatin structure and perhaps recruit CAD to chromatin. Another apoptosis activated protease is endonuclease G (EndoG). EndoG is encoded in the nuclear genome but is localized to mitochondria in normal cells. EndoG may play a role in the replication of the mitochondrial genome, as well as in apoptosis. Apoptotic signaling causes the release of EndoG from mitochondria. The EndoG and DFF/CAD pathways are independent since the EndoG pathway still occurs in cells lacking DFF.
(24) Hypoxia, as well as hypoxia followed by reoxygenation can trigger cytochrome c release and apoptosis. Glycogen synthase kinase (GSK-3) a serine-threonine kinase ubiquitously expressed in most cell types, appears to mediate or potentiate apoptosis due to many stimuli that activate the mitochondrial cell death pathway (Loberg, R D, et al., J. Biol. Chem. 277 (44): 41667-673 (2002)). It has been demonstrated to induce caspase 3 activation and to activate the proapoptotic tumor suppressor gene p53. It also has been suggested that GSK-3 promotes activation and translocation of the proapoptotic Bcl-2 family member, Bax, which, upon agregation and mitochondrial localization, induces cytochrome c release. Akt is a critical regulator of GSK-3, and phosphorylation and inactivation of GSK-3 may mediate some of the antiapoptotic effects of Akt.
(25) The term “arrange” as used herein refers to being disposed or placed in a particular kind of order.
(26) The term “associate” and its various grammatical forms as used herein refers to joining, connecting, or combining to, either directly, indirectly, actively, inactively, inertly, non-inertly, completely or incompletely. The term “in association with” refers to a relationship between two substances that connects, joins or links one substance with another.
(27) The term “autologous” as used herein means derived from the same organism.
(28) The term “Bence Jones protein(s)” as used herein refers to Ig light chain of one type (either κ or λ) that appears in the urine of patients with multiple myeloma.
(29) The term “biomarkers” (or “biosignatures”) as used herein refers to peptides, proteins, nucleic acids, antibodies, genes, metabolites, or any other substances used as indicators of a biologic state. It is a characteristic that is measured objectively and evaluated as a cellular or molecular indicator of normal biologic processes, pathogenic processes, or pharmacologic responses to a therapeutic intervention. The term “indicator” as used herein refers to any substance, number or ratio derived from a series of observed facts that may reveal relative changes as a function of time; or a signal, sign, mark, note or symptom that is visible or evidence of the existence or presence thereof. Once a proposed biomarker has been validated, it may be used to diagnose disease risk, presence of disease in an individual, or to tailor treatments for the disease in an individual (choices of drug treatment or administration regimes). In evaluating potential drug therapies, a biomarker may be used as a surrogate for a natural endpoint, such as survival or irreversible morbidity. If a treatment alters the biomarker, and that alteration has a direct connection to improved health, the biomarker may serve as a surrogate endpoint for evaluating clinical benefit. Clinical endpoints are variables that can be used to measure how patients feel, function or survive. Surrogate endpoints are biomarkers that are intended to substitute for a clinical endpoint; these biomarkers are demonstrated to predict a clinical endpoint with a confidence level acceptable to regulators and the clinical community.
(30) The term “bone” as used herein refers to a hard connective tissue consisting of cells embedded in a matrix of mineralized ground substance and collagen fibers. The fibers are impregnated with a form of calcium phosphate similar to hydroxyapatite as well as with substantial quantities of carbonate, citrate sodium and magnesium. Bone consists of a dense outer layer of compact substance or cortical substance covered by the periosteum and an inner loose, spongy substance; the central portion of a long bone is filled with marrow.
(31) The term “bound” or any of its grammatical forms as used herein refers to the capacity to hold onto, attract, interact with or combine with. In the chemical arts, the term “binding” and its other grammatical forms means a lasting attraction between chemical substances.
(32) The term “bone morphogenic protein (BMP)” as used herein refers to a group of cytokines that are part of the transforming growth factor-ß (TGF-ß) superfamily. BMP ligands bind to a complex of the BMP receptor type II and a BMP receptor type I (Ia or Ib). This leads to the phosphorylation of the type I receptor that subsequently phosphorylates the BMP-specific Smads (Smad1, Smad5, and Smad8), allowing these receptor-associated Smads to form a complex with Smad4 and move into the nucleus where the Smad complex binds a DNA binding protein and acts as a transcriptional enhancer. BMPs have a significant role in bone and cartilage formation in vivo. It has been reported that most BMPs are able to stimulate osteogenesis in mature osteoblasts, while BMP-2, 6, and 9 may play an important role in inducing osteoblast differentiation of mesenchymal stem cells (Cheng, H. et al., J. Bone & Joint Surgery 85: 1544-52 (2003)).
(33) The term “buoyancy force” as used herein refers to the upward force exerted by any fluid upon a body placed in it. The symbol for the magnitude of buoyancy is B or F.sub.B. Under Archimedes' principle, the magnitude of the buoyant force on an object is equal to the weight of the fluid it displaces, B=ρgV.sub.displaced, where ρ=density of the fluid; V=the volume of the fluid displaced; and g=the local acceleration due to gravity.
(34) The term “capillary force” as used herein refers to the movement of liquid along the surface of a solid when adhesion to the walls of the surface is stronger than the cohesive forces between the liquid molecules.
(35) The term “cell” is used herein to refer to the structural and functional unit of living organisms and is the smallest unit of an organism classified as living.
(36) The term “cell adhesion” refers to adherence of cells to surfaces or other cells, or to the close adherence (bonding) to adjoining cell surfaces.
(37) The term “cell adhesion molecule” refers to surface ligands, usually glycoproteins, that mediate cell-to-cell adhesion. Their functions include the assembly and interconnection of various vertebrate systems, as well as maintenance of tissue integration, wound healing, morphogenic movements, cellular migrations, and metastasis.
(38) The term “cell-cell interaction” refers to the ways in which living cells communicate, whether by direct contact or by means of chemical signals.
(39) The term “primary culture” as used herein refers to cells resulting from the seeding of dissociated tissues, e.g., patient-derived multiple myeloma cells (PMMC). Primary cultures often lose their phenotype and genotypes within several passages.
(40) The term “cell line” as used herein refers to a permanently established cell culture developed from a single cell and therefore consisting of cells with a uniform genetic and functional makeup that will proliferate indefinitely in culture.
(41) The term “cell strain” as used herein refers to cells which can be passed repeatedly but only for a limited number of passages.
(42) The term “cell clones” as used herein refers to individual cells separated from the population and allowed to grow.
(43) The term “cell passage” as used herein refers to the splitting (dilution) and subsequent redistribution of a monolayer or cell suspension into culture vessels containing fresh media.
(44) The term “chemokine” as used herein refers to a class of chemotactic cytokines that signal leukocytes to move in a specific direction. The terms “chemotaxis” or “chemotactic” refer to the directed motion of a motile cell or part along a chemical concentration gradient towards environmental conditions it deems attractive and/or away from surroundings it finds repellent.
(45) Cluster of Differentiation
(46) The cluster of differentiation (CD) system is a protocol used for the identification of cell surface molecules present on white blood cells. CD molecules can act in numerous ways, often acting as receptors or ligands; by which a signal cascade is initiated, altering the behavior of the cell. Some CD proteins do not play a role in cell signaling, but have other functions, such as cell adhesion. Generally, a proposed surface molecule is assigned a CD number once two specific monoclonal antibodies (mAb) are shown to bind to the molecule. If the molecule has not been well-characterized, or has only one mAb, the molecule usually is given the provisional indicator “w.”
(47) The CD system nomenclature commonly used to identify cell markers thus allows cells to be defined based on what molecules are present on their surface. These markers often are used to associate cells with certain immune functions. While using one CD molecule to define populations is uncommon, combining markers has allowed for cell types with very specific definitions within the immune system. There are more than 350 CD molecules identified for humans.
(48) CD molecules are utilized in cell sorting using various methods, including flow cytometry. Cell populations usually are defined using a “+” or a “−” symbol to indicate whether a certain cell fraction expresses or lacks a CD molecule. For example, a “CD34+, CD31−” cell is one that expresses CD34, but not CD31. Table 2 shows commonly used markers employed by skilled artisans to identify and characterize differentiated white blood cell types.
(49) TABLE-US-00002 TABLE 2 Type of Cell CD Markers Stem cells CD34+, CD31− All leukocyte groups CD45+ Granulocyte CD45+, CD15+ Monocyte CD45+, CD14+ T lymphocyte CD45+, CD3+ Type of Cell CD Markers T helper cell CD45+, CD3+, CD4+ Cytotoxic T cell CD45+, CD3+, CD8+ B lymphocyte CD45+, CD19+ or CD45+, CD20+ Thrombocyte CD45+, CD61+ Natural killer cell CD16+, CD56+, CD3
(50) CD molecules used in defining leukocytes are not exclusively markers on the cell surface. Most CD molecules have an important function, although only a small portion of known CD molecules have been characterized. For example, there are over 350 CDs for humans identified thus far.
(51) CD3 (TCR complex) is a protein complex composed of four distinct chains. In mammals, the complex contains a CD3γ chain, a CD3δ chain, and two CD3ε chains, which associate with the T cell receptor (TCR) and the ζ-chain to generate an activation signal in T lymphocytes. Together, the TCR, the ζ-chain and CD3 molecules comprise the TCR complex. The intracellular tails of CD3 molecules contain a conserved motif known as the immunoreceptor tyrosine-based activation motif (ITAM), which is essential for the signaling capacity of the TCR. Upon phosphorylation of the ITAM, the CD3 chain can bind ZAP70 (zeta associated protein), a kinase involved in the signaling cascade of the T cell.
(52) CD14 is a cell surface protein expressed mainly by macrophages and, to a lesser extent, neutrophil granulocytes. CD14+ cells are monocytes that can differentiate into a host of different cells; for example, differentiation to dendritic cells is promoted by cytokines such as GM-CSF and IL-4. CD14 acts as a co-receptor (along with toll-like receptor (TLR) 4 and lymphocyte antigen 96 (MD-2)) for the detection of bacterial lipopolysaccharide (LPS). CD14 only can bind LPS in the presence of lipopolysaccharide binding protein (LBP).
(53) CD15 (3-fucosyl-N-acetyl-lactosamine; stage specific embryonic antigen 1 (SSEA-1)) is a carbohydrate adhesion molecule that can be expressed on glycoproteins, glycolipids and proteoglycans. CD15 commonly is found on neutrophils and mediates phagocytosis and chemotaxis.
(54) CD16 is an Fc receptor (FcγRIIIa and FcγRIIIb) found on the surface of natural killer cells, neutrophil polymorphonuclear leukocytes, monocytes and macrophages. Fc receptors bind to the Fc portion of IgG antibodies.
(55) CD19 is a human protein expressed on follicular dendritic cells and B cells. This cell surface molecule assembles with the antigen receptor of B lymphocytes in order to decrease the threshold for antigen receptor-dependent stimulation. It generally is believed that, upon activation, the cytoplasmic tail of CD19 becomes phosphorylated, which allows binding by Src-family kinases and recruitment of phosphoinositide 3 (PI-3) kinases.
(56) CD20 is a non-glycosylated phosphoprotein expressed on the surface of all mature B-cells. Studies suggest that CD20 plays a role in the development and differentiation of B-cells into plasma cells. CD20 is encoded by a member of the membrane-spanning 4A gene family (MS4A). Members of this protein family are characterized by common structural features and display unique expression patterns among hematopoietic cells and nonlymphoid tissues.
(57) CD31 (platelet/endothelial cell adhesion molecule; PECAM1) normally is found on endothelial cells, platelets, macrophages and Kupffer cells, granulocytes, T cells, natural killer cells, lymphocytes, megakaryocytes, osteoclasts and neutrophils. CD31 has a key role in tissue regeneration and in safely removing neutrophils from the body. Upon contact, the CD31 molecules of macrophages and neutrophils are used to communicate the health status of the neutrophil to the macrophage.
(58) CD34 is a monomeric cell surface glycoprotein normally found on hematopoietic cells, endothelial progenitor cells, endothelial cells of blood vessels, and mast cells. The CD34 protein is a member of a family of single-pass transmembrane sialomucin proteins and functions as a cell-cell adhesion factor. Studies suggest that CD34 also may mediate the attachment of stem cells to bone marrow extracellular matrix or directly to stromal cells.
(59) CD45 (protein tyrosine phosphatase, receptor type, C; PTPRC) cell surface molecule is expressed specifically in hematopoietic cells. CD45 is a protein tyrosine phosphatase (PTP) with an extracellular domain, a single transmembrane segment, and two tandem intracytoplasmic catalytic domains, and thus belongs to receptor type PTP. Studies suggest it is an essential regulator of T-cell and B-cell antigen receptor signaling that functions by direct interaction with components of the antigen receptor complexes, or by activating various Src family kinases required for antigen receptor signaling. CD45 also suppresses JAK kinases, and thus functions as a regulator of cytokine receptor signaling. The CD45 family consists of multiple members that are all products of a single complex gene. Various known isoforms of CD45 include: CD45RA, CD45RB, CD45RC, CD45RAB, CD45RAC, CD45RBC, CD45RO, and CD45R (ABC). Different isoforms may be found on different cells. For example, CD45RA is found on naïve T cells and CD45RO is found on memory T cells.
(60) CD56 (neural cell adhesion molecule, NCAM) is a homophilic binding glycoprotein expressed on the surface of neurons, glia, skeletal muscle and natural killer cells. It generally is believed that NCAM has a role in cell-cell adhesion, neurite outgrowth, and synaptic plasticity. There are three known main isoforms of NCAM, each varying only in their cytoplasmic domains: NCAM-120 kDA (glycosylphopharidylinositol (GPI) anchored); NCAM-140 kDa (short cytoplasmic domain); and NCAM (long cytoplasmic domain). The different domains of NCAM have different roles, with the Ig domains being involved in homophilic binding to NCAM, and the fibronection type III (FNIII) domains being involved in signaling leading to neurite outgrowth.
(61) CD66b ((CGM1); CD67, CGM6, NCA-95) is a glycosylphosphatidylinositol (GPI)-linked protein that is a member of the immunoglobulin superfamily and carcinoembryonic antigen (CEA)-like subfamily. CD66b, expressed on granulocytes, generally is believed to be involved in regulating adhesion and activation of human eosinophils.
(62) Human leukocyte antigen (HLA)-DR is a major histocompatibility complex (MHC) class II cell surface receptor. HLA-DR commonly is found on antigen-presenting cells such as macrophages, B-cells, and dendritic cells. This cell surface molecule is a αβ heterodimer with each subunit containing 2 extracellular domains: a membrane spanning domain and a cytoplasmic tail. Both the α and β chains are anchored in the membrane. The complex of HLA-DR and its ligand (a peptide of at least 9 amino acids) constitutes a ligand for the TCR.
(63) Integrins are receptors that mediate attachment between a cell and the tissues surrounding it and are involved in cell-cell and cell-matrix interactions. In mammals, 18 α and 8 β subunits have been characterized. Both α and β subunits contain two separate tails, both of which penetrate the plasma membrane and possess small cytoplasmic domains.
(64) Integrin αM (ITGAM; CD11b; macrophage-1 antigen (Mac-1); complement receptor 3 (CR3)) is a protein subunit of the heterodimeric integrin αMβ2 molecule. The second chain of αMβ2 is the common integrin β2 subunit (CD18). αMβ2 is expressed on the surface of many leukocytes including monocytes, granulocytes, macrophages and natural killer cells. It generally is believed that of αMβ2 mediates inflammation by regulating leukocyte adhesion and migration. Further, of αMβ2 is thought to have a role in phagocytosis, cell-mediated cytotoxicity, chemotaxis and cellular activation, as well as being involved in the complement system due to its capacity to bind inactivated complement component 3b (iC3b). The ITGAM subunit of integrin of αMβ2 is involved directly in causing the adhesion and spreading of cells, but cannot mediate cellular migration without the presence of the β2 (CD18) subunit.
(65) CD61 (integrin β3; platelet glycoprotein IIIa; ITGB3) is a cell surface protein composed of an α-chain and a β-chain. A given chain may combine with multiple partners resulting in different integrins. CD61 is found along with the α IIb chain in platelets and is known to participate in cell adhesion and cell-surface mediated signaling.
(66) CD63 (LAMP-3; ME491; MLA1; OMA81H) is a cell surface glycoprotein of the transmembrane 4 superfamily (tetraspanin family). Many of these cell surface receptors have four hydrophobic domains and mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. CD63 forms complexes with integrins and may function as a blood platelet activation marker. It generally is believed that the sensitivity and specificity of measuring the upregulation of CD63 alone, or as part of a combination, is not specific enough to serve as a diagnostic marker for the diagnosis of IgE mediated allergy.
(67) CD123 is the 70 kD transmembrane a chain of the cytokine interleukin-3 (IL-3) receptor. Alone, CD123 binds IL-3 with low affinity; when CD123 associates with CDw131 (common β chain), it binds IL-3 with high affinity. CD123 does not transduce intracellular signals upon binding IL-3 and requires the β chain for this function. CD123 is expressed by myeloid precursors, macrophages, dendritic cells, mast cells, basophils, megakaryocytes, and some B cells. CD123 induces tyrosine phosphorylation within the cell and promotes proliferation and differentiation within the hematopoietic cell lines.
(68) CD203c (ectonucleotide pyrophosphatase/phosphodiesterase 3; ENPP3) is an ectoenzyme constitutively and specifically expressed on the cell surface and within intracellular compartments of basophils, mast cells, and precursors of these cells. CD203c detection by flow cytometry has been used to specifically identify basophils within a mixed leukocyte suspension, since its expression is unique to basophils among the cells circulating in blood. The expression of CD203c is both rapidly and markedly upregulated following IgE-dependent activation. However, as with CD63, it is generally believed that the sensitivity and specificity of measuring the upregulation of CD203c alone, or as part of a combination, is not specific enough to serve as a diagnostic marker for the diagnosis of IgE mediated allergy. Further, the exact role of CD203c in basophil biology is unknown.
(69) CD294 (G protein-coupled receptor 44; GPR44; CRTh2; DP2) is an integral membrane protein. This chemoattractant receptor homologous molecule is expressed on T helper type-2 cells. The transmembrane domains of these proteins mediate signals to the interior of the cell by activation of heterotrimeric G proteins that in turn activate various effector proteins that ultimately result a physiologic response.
(70) The term “clone” as used herein refers to a population of cells formed by repeated division from a common cell.
(71) The term “compatible” as used herein means that the components of a composition are capable of being combined with each other in a manner such that there is no interaction that would substantially reduce the efficacy of the composition under ordinary use conditions.
(72) The term “complement” as used herein refers to a system of plasma proteins that interact with pathogens to mark them for destruction by phagocytes. Complement proteins can be activated directly by pathogens or indirectly by pathogen-bound antibody, leading to a cascade of reactions that occurs on the surface of pathogens and generates active components with various effector functions.
(73) The term “component” as used herein refers to a constituent part, element or ingredient.
(74) The term “composition” as used herein refers to an aggregate material formed of two or more substances.
(75) The transitional term “comprising”, which is synonymous with “including,” “containing,” or “characterized by,” is inclusive or open-ended and does not exclude additional, unrecited elements or method steps.
(76) The term “concentration” as used herein refers to the amount of a substance in a given volume.
(77) The term “concurrent” as used herein refers to occurring, or to operating, before, during or after an event, episode or time period.
(78) The term “condition”, as used herein, refers to a variety of health states and is meant to include disorders or diseases caused by any underlying mechanism or injury.
(79) The term “connected” as used herein refers to being joined, linked, or fastened together in close association.
(80) The term “contact” as used herein refers to the state or condition of touching or being in immediate proximity.
(81) The terms “culture” and “cell culture” as used herein refers to the cultivation of cells in or on a controlled or defined medium. The terms “culture-expanded” or “expanded” are used interchangeably to refer to an increase in the number or amount of viable cells by cultivation of the cells in or on a controlled or defined medium. The term “culture medium” (or plural, media), as used herein refers to a substance containing nutrients in which cells or tissues are cultivated for controlled growth.
(82) The term “cytokine” as used herein refers to small soluble protein substances secreted by cells, which have a variety of effects on other cells. Cytokines mediate many important physiological functions, including growth, development, wound healing, and the immune response. They act by binding to their cell-specific receptors located in the cell membrane, which allows a distinct signal transduction cascade to start in the cell, which eventually will lead to biochemical and phenotypic changes in target cells. Generally, cytokines act locally. They include type I cytokines, which encompass many of the interleukins including interleukin 2 (IL-2), as well as several hematopoietic growth factors; type II cytokines, including the interferons and interleukin-10; tumor necrosis factor (“TNF”)-related molecules, including TNFα and lymphotoxin; immunoglobulin super-family members, including interleukin 1 (“IL-1”); and the chemokines, a family of molecules that play a critical role in a wide variety of immune and inflammatory functions. The same cytokine can have different effects on a cell depending on the state of the cell. Cytokines often regulate the expression of, and trigger cascades of, other cytokines.
(83) The term “cytometry” as used herein, refers to a process in which physical and/or chemical characteristics of single cells, or by extension, of other biological or nonbiological particles in roughly the same size or stage, are measured. In flow cytometry, the measurements are made as the cells or particles pass through the measuring apparatus (a flow cytometer) in a fluid stream. A cell sorter, or flow sorter, is a flow cytometer that uses electrical and/or mechanical means to divert and to collect cells.
(84) The term “dendritic cells” (DCs) as used herein, refers to professional antigen presenting cells (APCs) capable of presenting both MHC-I and MHC-II antigens.
(85) The phrase “density-dependent inhibition of growth” as used herein refers to reduced response of cells upon reaching a threshold density. These cells recognize the boundaries of neighbor cells upon confluence and respond, depending on growth patterns, by forming a monolayer. Usually these cells transit through the cell cycle at reduce rate (grow slower).
(86) The term “detectable response” refers to any signal or response that may be detected in an assay, which may be performed with or without a detection reagent. Detectable responses include, but are not limited to, radioactive decay and energy (e.g., fluorescent, ultraviolet, infrared, visible) emission, absorption, polarization, fluorescence, phosphorescence, transmission, reflection or resonance transfer. Detectable responses also include chromatographic mobility, turbidity, electrophoretic mobility, mass spectrum, ultraviolet spectrum, infrared spectrum, nuclear magnetic resonance spectrum and x-ray diffraction. Alternatively, a detectable response may be the result of an assay to measure one or more properties of a biologic material, such as melting point, density, conductivity, surface acoustic waves, catalytic activity or elemental composition. A “detection reagent” is any molecule that generates a detectable response indicative of the presence or absence of a substance of interest. Detection reagents include any of a variety of molecules, such as antibodies, nucleic acid sequences and enzymes. To facilitate detection, a detection reagent may comprise a marker.
(87) The term “derivative” as used herein means a compound that may be produced from another compound of similar structure in one or more steps. A “derivative” or “derivatives” of a peptide or a compound retains at least a degree of the desired function of the peptide or compound. Accordingly, an alternate term for “derivative” may be “functional derivative.”
(88) The term “derived from” as used herein is used to refer to originating, sourced, or coming from.
(89) The term “differential label” as used herein, generally refers to a stain, dye, marker, antibody or antibody-dye combination, or intrinsically fluorescent cell-associated molecule, used to characterize or contrast components, small molecules, macromolecules, e.g., proteins, and other structures of a single cell or organism. The term “dye” (also referred to as “fluorochrome” or “fluorophore”) as used herein refers to a component of a molecule which causes the molecule to be fluorescent. The component is a functional group in the molecule that absorbs energy of a specific wavelength and re-emits energy at a different (but equally specific) wavelength. The amount and wavelength of the emitted energy depend on both the dye and the chemical environment of the dye. Many dyes are known, including, but not limited to, FITC, R-phycoerythrin (PE), PE-Texas Red Tandem, PE-Cy5 Tandem, propidium iodem, EGFP, EYGP, ECF, DsRed, allophycocyanin (APC), PerCp, SYTOX Green, courmarin, Alexa Fluors (350, 430, 488, 532, 546, 555, 568, 594, 633, 647, 660, 680, 700, 750), Cy2, Cy3, Cy3.5, Cy5, Cy5.5, Cy7, Hoechst 33342, DAPI, Hoechst 33258, SYTOX Blue, chromomycin A3, mithramycin, YOYO-1, SYTOX Orange, ethidium bromide, 7-AAD, acridine orange, TOTO-1, TO-PRO-1, thiazole orange, TOTO-3, TO-PRO-3, thiazole orange, propidium iodide (PI), LDS 751, Indo-1, Fluo-3, DCFH, DHR, SNARF, Y66F, Y66H, EBFP, GFPuv, ECFP, GFP, AmCyan1, Y77W, S65A, S65C, S65L, S65T, ZsGreen1, ZsYellow1, DsRed2, DsRed monomer, AsRed2, mRFP1, HcRed1, monochlorobimane, calcein, the DyLight Fluors, cyanine, hydroxycoumarin, aminocoumarin, methoxycoumarin, Cascade Blue, Lucifer Yellow, NBD, PE-Cy5 conjugates, PE-Cy7 conjugates, APC-Cy7 conjugates, Red 613, fluorescein, FluorX, BODIDY-FL, TRITC, X-whodamine, Lissamine Rhodamine B, Texas Red, TruRed, and derivatives thereof.
(90) The term “differentiation” as used herein refers to a property of cells to exhibit tissue-specific differentiated properties in culture.
(91) The term “dissolved gas molecules” as used herein refers to molecules (e.g., O.sub.2, CO.sub.2, etc.) dissolved in cell culture medium.
(92) The term “disease” or “disorder,” as used herein, refers to an impairment of health or a condition of abnormal functioning.
(93) The term “drug” as used herein refers to a therapeutic agent or any substance used in the prevention, diagnosis, alleviation, treatment, or cure of disease.
(94) The term “dynamic” as used herein refers to changing conditions to which an agent must adapt.
(95) The terms “dynamic viscosity” or “absolute viscosity” as used herein refers to the internal resistance to movement of one layer of a fluid over another. Dynamic viscosity (μ) is measured in Pascal-second units (Pa.Math.s).
(96) The term “endosteal” as used herein refers to a connective tissue that lines the surface of bony tissue that forms the medullary cavity of long bones.
(97) The term “extracellular matrix” as used herein refers to a construct in a cell's external environment with which the cell interacts via specific cell surface receptors. The extracellular matrix serves many functions, including, but not limited to, providing support and anchorage for cells, segregating one tissue from another tissue, and regulating intracellular communication. The extracellular matrix is composed of an interlocking mesh of fibrous proteins and glycosaminoglycans (GAGs). Examples of fibrous proteins found in the extracellular matrix include collagen, elastin, fibronectin, and laminin. Examples of GAGs found in the extracellular matrix include proteoglycans (e.g., heparin sulfate), chondroitin sulfate, keratin sulfate, and non-proteoglycan polysaccharide (e.g., hyaluronic acid). The term “proteoglycan” refers to a group of glycoproteins that contain a core protein to which is attached one or more glycosaminoglycans.
(98) Flow Cytometry
(99) Flow cytometry is a technique for counting, examining, and sorting microscopic particles suspended in a stream of fluid. It allows simultaneous multi-parametric analysis of the physical and/or chemical characteristics of single cells flowing through an optical and/or electronic detection apparatus.
(100) Flow cytometry utilizes a beam of light (usually laser light) of a single wavelength that is directed onto a hydro-dynamically focused stream of fluid. A number of detectors are aimed at the point where the stream passes through the light beam; one in line with the light beam (Forward Scatter or FSC) and several perpendicular to it (Side Scatter (SSC) and one or more fluorescent detectors). Each suspended particle passing through the beam scatters the light in some way, and fluorescent chemicals found in the particle or attached to the particle may be excited into emitting light at a lower frequency than the light source. This combination of scattered and fluorescent light is picked up by the detectors, and by analyzing fluctuations in brightness at each detector (usually one for each fluorescent emission peak) it then is possible to derive various types of information about the physical and chemical structure of each individual particle. FSC correlates with the cell volume and SSC depends on the inner complexity of the particle (i.e. shape of the nucleus, the amount and type of cytoplasmic granules or the membrane roughness).
(101) FACS
(102) The term “fluorescence-activated cell sorting” (also referred to as “FACS”), as used herein, refers to a method for sorting a heterogeneous mixture of biological cells into one or more containers, one cell at a time, based upon the specific light scattering and fluorescent characteristics of each cell.
(103) Fluorescence-activated cell sorting (FACS) is a specialized type of flow cytometry. It provides a method for sorting a heterogeneous mixture of biological cells into two or more containers, one cell at a time, based upon the specific light scattering and fluorescent characteristics of each cell. It provides fast, objective and quantitative recording of fluorescent signals from individual cells as well as physical separation of cells of particular interest.
(104) Utilizing FACS, a cell suspension is entrained in the center of a narrow, rapidly flowing stream of liquid. The flow is arranged so that there is a large separation between cells relative to their diameter. A vibrating mechanism causes the stream of cells to break into individual droplets. The system is adjusted so that there is a low probability of more than one cell being in a droplet. Before the stream breaks into droplets the flow passes through a fluorescence measuring station where the fluorescent character of interest of each cell is measured. An electrical charging ring or plane is placed just at the point where the stream breaks into droplets. A charge is placed on the ring based on the prior light scatter and fluorescence intensity measurements, and the opposite charge is trapped on the droplet as it breaks from the stream. The charged droplets then fall through an electrostatic deflection system that diverts droplets into containers based upon their charge. In some systems the charge is applied directly to the stream while a nearby plane or ring is held at ground potential and the droplet breaking off retains charge of the same sign as the stream. The stream is then returned to neutral after the droplet breaks off.
(105) The term “growth” as used herein refers to a process of becoming larger, longer or more numerous, or an increase in size, number, or volume.
(106) The term “growth factor” as used herein refers to signal molecules involved in the control of cell growth and differentiation and cell survival.
(107) The terms “high-content screening (HCS)” or “high-content analysis” as used herein refers to a set of analytical methods using automated microscopy, multi-parameter image processing, and visualization tools to extract quantitative data from cell populations. HCS typically employs fluorescence imaging of samples in a high-throughput format and reports quantitatively on parameters such as spatial distribution of targets and individual cell and organelle morphology.
(108) The term “hybridoma cell” as used herein refers to an immortalized hybrid cell resulting from the in vitro fusion of an antibody-secreting B cell with a myeloma cell. For example, monoclonal antibodies (mAbs) can be generated by fusing mouse spleen cells from an immunized donor with a mouse myeloma cell line to yield established mouse hybridoma clones that grow in selective media.
(109) The term “hydrostatic pressure” as used herein refers to the pressure exerted by a fluid at equilibrium at a given point within the fluid, due to the force of gravity. Hydrostatic pressure increases in proportion to depth measured from the surface because of the increasing weight of fluid exerting downward force from above.
(110) The term “immunoglobulin (Ig)” as used herein refers to one of a class of structurally related proteins, each consisting of two pairs of polypeptide chains, one pair of identical light (L) (low molecular weight) chains (κ or λ), and one pair of identical heavy (H) chains (γ, α, μ, δ and ε), usually all four linked together by disulfide bonds. On the basis of the structural and antigenic properties of the H chains, Igs are classified (in order of relative amounts present in normal human serum) as IgG, IgA, IgM, IgD, and IgE. Each class of H chain can associate with either κ or λ L chains. There are four subclasses of IgG immunoglobulins (IgG1, IgG2, IgG3, IgG4) having γ1, γ2, γ3, and γ4 heavy chains respectively. In its secreted form, IgM is a pentamer composed of five four-chain units, giving it a total of 10 antigen binding sites. Each pentamer contains one copy of a J chain, which is covalently inserted between two adjacent tail regions.
(111) The term Ig refers not only to antibodies, but also to pathological proteins classified as myeloma proteins, which appear in multiple myeloma along with Bence Jones proteins, myeloma globulins, and Ig fragments.
(112) Antibodies are serum proteins, the molecules of which possess small areas of their surface that are complementary to small chemical groupings on their targets. Both light and heavy chains usually cooperate to form the antigen binding surface. These complementary regions (referred to as the antibody combining sites or antigen binding sites) of which there are at least two per antibody molecule, and in some types of antibody molecules ten, eight, or in some species as many as 12, may react with their corresponding complementary region on the antigen (the antigenic determinant or epitope) to link several molecules of multivalent antigen together to form a lattice.
(113) The principle of complementarity, which often is compared to the fitting of a key in a lock, involves relatively weak binding forces (hydrophobic and hydrogen bonds, van der Waals forces, and ionic interactions), which are able to act effectively only when the two reacting molecules can approach very closely to each other and indeed so closely that the projecting constituent atoms or groups of atoms of one molecule can fit into complementary depressions or recesses in the other. Antigen-antibody interactions show a high degree of specificity, which is manifest at many levels. Brought down to the molecular level, specificity means that the combining sites of antibodies to an antigen have a complementarity not at all similar to the antigenic determinants of an unrelated antigen. Whenever antigenic determinants of two different antigens have some structural similarity, some degree of fitting of one determinant into the combining site of some antibodies to the other may occur, and that this phenomenon gives rise to cross-reactions.
(114) All five immunoglobulin classes differ from other serum proteins in that they normally show a broad range of electrophoretic mobility and are not homogeneous. This heterogeneity—that individual IgG molecules, for example, differ from one another in net charge—is an intrinsic property of the immunoglobulins, and accounts for the libraries of antibodies each individual possesses.
(115) The term “immunoglobulin fragment” (“Ig fragment”) refers to a partial immunoglobulin molecule.
(116) The term “in vitro immunization” is used herein to refer to primary activation of antigen-specific B cells in culture.
(117) The term “inhibit” and its various grammatical forms, including, but not limited to, “inhibiting” or “inhibition”, are used herein to refer to reducing the amount or rate of a process, to stopping the process entirely, or to decreasing, limiting, or blocking the action or function thereof. Inhibition can include a reduction or decrease of the amount, rate, action function, or process of a substance by at least 5%, at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at least 99%.
(118) The term “inhibitor” as used herein refers to a second molecule that binds to a first molecule thereby decreasing the first molecule's activity. Enzyme inhibitors are molecules that bind to enzymes thereby decreasing enzyme activity. The binding of an inhibitor can stop a substrate from entering the active site of the enzyme and/or hinder the enzyme from catalyzing its reaction. Inhibitor binding is either reversible or irreversible. Irreversible inhibitors usually react with the enzyme and change it chemically, for example, by modifying key amino acid residues needed for enzymatic activity. In contrast, reversible inhibitors bind non-covalently and produce different types of inhibition depending on whether these inhibitors bind the enzyme, the enzyme-substrate complex, or both. Enzyme inhibitors often are evaluated by their specificity and potency.
(119) The term “injury,” as used herein, refers to damage or harm to a structure or function of the body caused by an outside agent or force, which can be physical or chemical.
(120) The term “immunomodulatory cell(s)” as used herein refer(s) to cell(s) that are capable of augmenting or diminishing immune responses by expressing chemokines, cytokines and other mediators of immune responses.
(121) The term “inflammatory cytokines” or “inflammatory mediators” as used herein refers to the molecular mediators of the inflammatory process, which may modulate being either pro- or anti-inflammatory in their effect. These soluble, diffusible molecules act both locally at the site of tissue damage and infection and at more distant sites. Some inflammatory mediators are activated by the inflammatory process, while others are synthesized and/or released from cellular sources in response to acute inflammation or by other soluble inflammatory mediators. Examples of inflammatory mediators of the inflammatory response include, but are not limited to, plasma proteases, complement, kinins, clotting and fibrinolytic proteins, lipid mediators, prostaglandins, leukotrienes, platelet-activating factor (PAF), peptides and amines, including, but not limited to, histamine, serotonin, and neuropeptides, pro-inflammatory cytokines, including, but not limited to, interleukin-1-beta (IL-1β), interleukin-4 (IL-4), interleukin-6 (IL-6), interleukin-8 (IL-8), tumor necrosis factor-alpha (TNF-α), interferon-gamma (IF-γ), and interleukin-12 (IL-12).
(122) The term “interacted with” as used herein refers to a kind of action that occurs as two or more objects have an effect upon one another.
(123) The term “interleukin (IL)” as used herein refers to a cytokine secreted by, and acting on, leukocytes. Interleukins regulate cell growth, differentiation, and motility, and stimulates immune responses, such as inflammation. Examples of interleukins include interleukin-1 (IL-1), interleukin 2 (IL-2), interleukin-1β (IL-1β), interleukin-6 (IL-6), interleukin-8 (IL-8), and interleukin-12 (IL-12).
(124) The term “isolated” is used herein to refer to material, such as, but not limited to, a cell, nucleic acid, peptide, polypeptide, or protein, which is substantially or essentially free from components that normally accompany or interact with it as found in its naturally occurring environment.
(125) The term “Kaplan Meier plot” or “Kaplan Meier survival curve” as used herein refers to a plot of probability of clinical study patients surviving in a given length of time while considering time in many small intervals. The Kaplan Meier plot assumes that: (i) at any time patients who are censored (i.e., lost) have the same survival prospects as patients who continue to be followed; (ii) the survival probabilities are the same for patients recruited early and late in the study; and (iii) the event (e.g., death) happens at the time specified. Probabilities of occurrence of event are computed at a certain point of time with successive probabilities multiplied by any earlier computed probabilities to get a final estimate. The survival probability at any particular time is calculated as the number of patients surviving divided by the number of patients at risk. Patients who have died, dropped out, or have been censored from the study are not counted as at risk.
(126) The terms “label” or “labeled” as used herein refers to incorporation of a detectable marker or molecule.
(127) The term “major histocompatibility complex (MHC)” as used herein refers to a cluster of genes that encodes a set of membrane glycoproteins (the MHC molecules). The major Mhc-Ii genes of humans are the HLA-DRA and HLA-DRB that encode the chains that form the HLA-DR molecule, a major antigen presentation element. The binding of peptides by an MHC-I or MHC-II molecule is the initial selective event that permits the cell expressing the MHC molecule (the APC, or when this cell is to be the recipient of a cytolytic signal, the target cell) to sample fragments derived either from its own proteins (for MHC-I-restricted antigen presentation) or from those proteins ingested from the immediate extracellular environment (in the case of MHC-II). The biochemical steps involved in the production of antigen fragments from large molecules are collectively known as “antigen processing”; those that concern the binding of antigen fragments by MHC molecules and their display at the cell surface are known as “antigen presentation”.
(128) The term “marker” as used herein refers to a receptor, or a combination of receptors, found on the surface of a cell. These markers allow a cell type to be distinguishable from other kinds of cells. Specialized protein receptors (markers) that have the capability of selectively binding or adhering to other signaling molecules coat the surface of every cell in the body. Cells use these receptors and the molecules that bind to them as a way of communicating with other cells and to carry out their proper function in the body.
(129) The term “matrix” as used herein refers to a three dimensional network of fibers that contains voids (or “pores”) where the woven fibers intersect. The structural parameters of the pores, including the pore size, porosity, pore interconnectivity/tortuosity and surface area, affect how fluid, solutes and cells move in and out of the matrix.
(130) The term “microfluidics” refers to a set of technologies that control the flow of minute amounts of liquids or dissolved gas molecules, typically measured in nano- and pico-liters in a miniaturized system. The microchips require only a small amount of sample and reagent for each process, and microscale reactions occur much faster because of the physics of small fluid volumes.
(131) The term “(culture) medium flow rate” or “flow rate” as used herein refers to the volume of culture fluid which passes per unit time, for example, expressed in μL/min, and is represented herein by the symbol (Q).
(132) The term “modulate” as used herein means to regulate, alter, adapt, or adjust to a certain measure or proportion.
(133) The term “monoclonal” as used herein refers to resulting from the proliferation of a single clone.
(134) The term “monoclonal Ig” as used herein refers to a homogeneous immunoglobulin resulting from the proliferation of a single clone of plasma cells and which, during electrophoresis of serum, appears as a narrow band or “spike”. It is characterized by H chains of a single class and subclass, and light chains of a single type.
(135) The term “monolayer” as used herein refers to a layer of cells one cell thick, grown in a culture.
(136) As used herein, the terms “osteoprogenitor cells,” “mesenchymal cells,” “mesenchymal stem cells (MSC),” or “marrow stromal cells” are used interchangeably to refer to multipotent stem cells that differentiate from CFU-F cells capable of differentiating along several lineage pathways into osteoblasts, chondrocytes, myocytes and adipocytes. When referring to bone or cartilage, MSCs commonly are known as osteochondrogenic, osteogenic, chondrogenic, or osteoprogenitor cells, since a single MSC has shown the ability to differentiate into chondrocytes or osteoblasts, depending on the medium.
(137) The term “osteoblasts” as used herein refers to cells that arise when osteoprogenitor cells or mesenchymal cells, which are located near all bony surfaces and within the bone marrow, differentiate under the influence of growth factors. Osteoblasts, which are responsible for bone matrix synthesis, secrete a collagen rich ground substance essential for later mineralization of hydroxyapatite and other crystals. The collagen strands to form osteoids: spiral fibers of bone matrix. Osteoblasts cause calcium salts and phosphorus to precipitate from the blood, which bond with the newly formed osteoid to mineralize the bone tissue. Once osteoblasts become trapped in the matrix they secrete, they become osteocytes. From least to terminally differentiated, the osteocyte lineage is (i) Colony-forming unit-fibroblast (CFU-F); (ii) mesenchymal stem cell/marrow stromal cell (MSC); (3) osteoblast; (4) osteocyte.
(138) The term “osteogenesis” refers to the formation of new bone from bone forming or osteocompetent cells.
(139) The term “osteocalcin” as used herein refers to a protein constituent of bone; circulating levels are used as a marker of increased bone turnover.
(140) The term “osteoclast” as used herein refers to the large multinucleate cells associated with areas of bone resorption bone resorption (breakdown).
(141) The term “osteogenic factors” refers to the plethora of mediators associated with bone development and repair, including, but not limited to bone morphogenic proteins (BMPs), vascular endothelial growth factor (VEGF), basic fibroblast growth factor (bFGF), transforming growth factor beta (TGFβ), and platelet-derived growth factor (PDGF).
(142) The term “overall survival” (OS) as used herein refers to the length of time from either the date of diagnosis or the start of treatment for a disease that subjects diagnosed with the disease are still alive.
(143) The term “perfusion” as used herein refers to the process of nutritive delivery of arterial blood to a capillary bed in biological tissue. Perfusion (“F”) can be calculated with the formula F=((PA−Pv)/R) wherein PA is mean arterial pressure, Pv is mean venous pressure, and R is vascular resistance. Tissue perfusion can be measured in vivo, by, for example, but not limited to, magnetic resonance imaging (MRI) techniques. Such techniques include using an injected contrast agent and arterial spin labeling (ASL) (wherein arterial blood is magnetically tagged before it enters into the tissue of interest and the amount of labeling is measured and compared to a control recording). Tissue perfusion can be measured in vitro, by, for example, but not limited to, tissue oxygen saturation (StO.sub.2) using techniques including, but not limited to, hyperspectral imaging (HSI).
(144) The term “polymer” as used herein refers to a macromolecule formed by the chemical union of five or more identical combining units (monomers). Exemplary polymers by type include, without limitation, inorganic polymers (e.g., siloxane, sulfur chains, black phosphorus, boron-nitrogen, alumino silicate, boro silicate, or boro-alumino silicate, glass ceramics, ceramics, and semiconductor or crystalline materials (e.g. silicones); Organic polymers, including natural organic polymers e.g., polysaccharides, such as starch, cellulose, pectin, seaweed gums (agar, etc), vegetable gums (Arabic, etc.); polypeptides (e.g., albumin, globulin); and hydrocarbons, e.g., polyisoprene; synthetic polymers, including thermoplastic polymers, such as polyvinyl chloride, polyethylene (linear), polystyrene, polypropylene, fluorocarbon resins, polyurethane, and acrylate resins, and thermosetting synthetic polymers, such as elastomers, polyethylene (cross-linked), phenolics, and polyesters; and semisynthetic organic polymers, such as cellulosics (e.g., methylcellulose, cellulose acetate) and modified starches. Further examples of polymers include, without limitation, hydrophilic polyethylene, polystyrenes, polypropylenes, acrylates, methacrylates, polycarbonates, polysulfones, polyesterketones, poly- or cyclic olefins, polychlorotrifluoroethylene, and polyethylene therephthalate.
(145) The term “pore” as used herein refers to a void or minute opening. The term “pore size” as used herein refers to the diameter of the individual pores in a material, typically specified in micrometers (μm). Most membranes and filter media contain a distribution of pore sizes, meaning that pores larger and smaller may be present.
(146) The term “porosity” as used herein refers to the percent of the total surface area or total volume of a material occupied by pores, and symbolized by (ε).
(147) The term “pressure differential” as used herein refers to the difference in pressure between two points in a system.
(148) The term “progression free survival” or “PFS” as used herein refers to length of time during and after the treatment of a disease, such as cancer, that a patient lives with the disease but it does not get worse. In a clinical trial, measuring the progression free survival is one way to determine how well a new treatment works.
(149) The terms “proliferation” and “propagation” are used interchangeably herein to refer to expansion of a population of cells by the continuous division of single cells into identical daughter cells.
(150) The term “reduce” or “reducing” as used herein refers to the limiting of an occurrence of a disease, disorder or condition in individuals at risk of developing the disorder.
(151) The term “relapse” as used herein refers to the return of a disease or the signs and symptoms of a disease after a period of improvement.
(152) The term “relapse-free survival (RFS)” as used herein refers to the length of time after primary treatment for a cancer during which the patient survives without any signs or symptoms of that cancer. Also called disease-free survival (DFS).
(153) The term “shear stress” as used herein refers to the frictional force tending to cause deformation of a material by slippage along a plane or planes parallel to the imposed stress. Shear stress is measured in pascals (Pa) and is denoted by (τ). The term “shear stress” in context of a fluid means a force per unit area, acting parallel to an infinitesimal surface element. Shear stress is primarily caused by friction between fluid particles, due to fluid viscosity.
(154) The term “stimulate” in any of its grammatical forms as used herein refers to inducing activation or increasing activity.
(155) As used herein, the terms “subject” or “individual” or “patient” are used interchangeably to refer to a member of an animal species of mammalian origin, including humans. The term “a subject in need thereof” is used to refer to a subject who presents with presents with diagnostic markers and symptoms associated with multiple myeloma and either (i) will be in need of treatment, (ii) is receiving treatment; or (iii) has received treatment, unless the context and usage of the phrase indicates otherwise.
(156) The term “surface tension” as used herein refers to the property of the surface of a liquid that allows it to resist an external force, due to the cohesive nature of its molecules. For a molecule on the surface of the liquid, there will be a net inward force since there will be no attractive force acting from above. This inward net force causes the molecules on the surface to contract and to resist being stretched or broken. Due to the surface tension, small objects will “float” on the surface of a fluid, as long as the object cannot break through and separate the top layer of water molecules. When an object is on the surface of the fluid, the surface under tension will behave like an elastic membrane.
(157) The term “suspension culture” as used herein refers to cells which do not require attachment to a substratum to grow, i.e. they are anchorage independent. Cell cultures derived from blood are typically grown in suspension, where the cells can grow as single cells or clumps. To subculture the cultures which grow as single cells they can be diluted. However, the cultures containing clumps need to have the clumps disassociated prior to subculturing of the culture.
(158) The term “symptom” as used herein refers to a phenomenon that arises from and accompanies a particular disease or disorder and serves as an indication of it.
(159) The term “syndrome” as used herein refers to a pattern of symptoms indicative of some disease or condition.
(160) The term “target” as used herein refers to a biological entity, such as, for example, but not limited to, a protein, cell, organ, or nucleic acid, whose activity can be modified by an external stimulus. Depending upon the nature of the stimulus, there may be no direct change in the target, or a conformational change in the target may be induced.
(161) The term “therapeutic agent” as used herein refers to a drug, molecule, nucleic acid, protein, metabolite, composition or other substance that provides a therapeutic effect. The term “active” as used herein refers to the ingredient, component or constituent of the compositions of the described invention responsible for the intended therapeutic effect. The terms “therapeutic agent” and “active agent” are used interchangeably herein. The term “therapeutic component” as used herein refers to a therapeutically effective dosage (i.e., dose and frequency of administration) that eliminates, reduces, or prevents the progression of a particular disease manifestation in a percentage of a population. An example of a commonly used therapeutic component is the ED50 which describes the dose in a particular dosage that is therapeutically effective for a particular disease manifestation in 50% of a population.
(162) The terms “therapeutic amount”, “therapeutically effective amount”, an “amount effective”, or “pharmaceutically effective amount” of an active agent is used interchangeably to refer to an amount that is sufficient to provide the intended benefit of treatment.
(163) The term “therapeutic effect” as used herein refers to a consequence of treatment, the results of which are judged to be desirable and beneficial. A therapeutic effect can include, directly or indirectly, the arrest, reduction, or elimination of a disease manifestation. A therapeutic effect can also include, directly or indirectly, the arrest reduction or elimination of the progression of a disease manifestation.
(164) General principles for determining therapeutic effectiveness, which may be found in Chapter 1 of Goodman and Gilman's The Pharmacological Basis of Therapeutics, 10th Edition, McGraw-Hill (New York) (2001), incorporated herein by reference, are summarized below.
(165) Pharmacokinetic principles provide a basis for modifying a dosage regimen to obtain a desired degree of therapeutic efficacy with a minimum of unacceptable adverse effects. In situations where the drug's plasma concentration can be measured and related to the therapeutic window, additional guidance for dosage modification can be obtained.
(166) Drug products are considered to be pharmaceutical equivalents if they contain the same active ingredients and are identical in strength or concentration, dosage form, and route of administration. Two pharmaceutically equivalent drug products are considered to be bioequivalent when the rates and extents of bioavailability of the active ingredient in the two products are not significantly different under suitable test conditions.
(167) The term “therapeutic window” refers to a concentration range that provides therapeutic efficacy without unacceptable toxicity. Following administration of a dose of a drug, its effects usually show a characteristic temporal pattern. A lag period is present before the drug concentration exceeds the minimum effective concentration (“MEC”) for the desired effect. Following onset of the response, the intensity of the effect increases as the drug continues to be absorbed and distributed. This reaches a peak, after which drug elimination results in a decline in the effect's intensity that disappears when the drug concentration falls back below the MEC. Accordingly, the duration of a drug's action is determined by the time period over which concentrations exceed the MEC. The therapeutic goal is to obtain and maintain concentrations within the therapeutic window for the desired response with a minimum of toxicity. Drug response below the MEC for the desired effect will be subtherapeutic, whereas for an adverse effect, the probability of toxicity will increase above the MEC. Increasing or decreasing drug dosage shifts the response curve up or down the intensity scale and is used to modulate the drug's effect. Increasing the dose also prolongs a drug's duration of action but at the risk of increasing the likelihood of adverse effects. Accordingly, unless the drug is nontoxic, increasing the dose is not a useful strategy for extending a drug's duration of action.
(168) Instead, another dose of drug should be given to maintain concentrations within the therapeutic window. In general, the lower limit of the therapeutic range of a drug appears to be approximately equal to the drug concentration that produces about half of the greatest possible therapeutic effect, and the upper limit of the therapeutic range is such that no more than about 5% to about 10% of patients will experience a toxic effect. These figures can be highly variable, and some patients may benefit greatly from drug concentrations that exceed the therapeutic range, while others may suffer significant toxicity at much lower values. The therapeutic goal is to maintain steady-state drug levels within the therapeutic window. For most drugs, the actual concentrations associated with this desired range are not and need not be known, and it is sufficient to understand that efficacy and toxicity are generally concentration-dependent, and how drug dosage and frequency of administration affect the drug level. For a small number of drugs where there is a small (two- to three-fold) difference between concentrations resulting in efficacy and toxicity, a plasma-concentration range associated with effective therapy has been defined.
(169) In this case, a target level strategy is reasonable, wherein a desired target steady-state concentration of the drug (usually in plasma) associated with efficacy and minimal toxicity is chosen, and a dosage is computed that is expected to achieve this value. Drug concentrations subsequently are measured and dosage is adjusted if necessary to approximate the target more closely.
(170) In most clinical situations, drugs are administered in a series of repetitive doses or as a continuous infusion to maintain a steady-state concentration of drug associated with the therapeutic window. To maintain the chosen steady-state or target concentration (“maintenance dose”), the rate of drug administration is adjusted such that the rate of input equals the rate of loss. If the clinician chooses the desired concentration of drug in plasma and knows the clearance and bioavailability for that drug in a particular patient, the appropriate dose and dosing interval can be calculated.
(171) The term “two-dimensional tissue construct” as used herein refers to a collection of cells and the intercellular substances surrounding them in a geometric configuration having length and width.
(172) The term “three-dimensional tissue construct” as used herein refers to a tissue like collection of cells and the intercellular substances surrounding them in a geometric configuration having length, width, and depth.
(173) The term “transplantation” as used herein, refers to removal and transfer of cells, a tissue or an organ from one part or individual to another.
(174) As used herein the term “treating” includes abrogating, substantially inhibiting, slowing or reversing the progression of a condition, substantially ameliorating clinical symptoms of a condition, or substantially preventing the appearance of clinical symptoms of a condition. Treating further refers to accomplishing one or more of the following: (a) reducing the severity of the disorder; (b) limiting development of symptoms characteristic of the disorder(s) being treated; (c) limiting worsening of symptoms characteristic of the disorder(s) being treated; (d) limiting recurrence of the disorder(s) in patients that have previously had the disorder(s); and (e) limiting recurrence of symptoms in patients that were previously asymptomatic for the disorder(s).
(175) The term “tumor necrosis factor” (TNF) as used herein refers to a cytokine made by white blood cells in response to an antigen or infection, which induce necrosis (death) of tumor cells and possesses a wide range of pro-inflammatory actions. Tumor necrosis factor also is a multifunctional cytokine with effects on lipid metabolism, coagulation, insulin resistance, and the function of endothelial cells lining blood vessels.
(176) The terms “VEGF-1” or “vascular endothelial growth factor-1” are used interchangeably herein to refer to a cytokine that mediates numerous functions of endothelial cells including proliferation, migration, invasion, survival, and permeability. VEGF is critical for angiogenesis.
(177) I. An In Vitro Multiwell Plate-Based Pumpless Perfusion Culture Device
(178) According to some embodiments, the described invention provides an in vitro multiwell plate-based pumpless perfusion culture device. According to some embodiments, the device comprises, from top to bottom:
(179) (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber;
(180) (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber;
(181) (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer;
(182) (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer;
(183) (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer;
(184) (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device; and
(185) (vii) a rocking platform for holding the multi-well plate, characterized by a rocking speed and an adjustable rocking/tilt angle;
(186) wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well;
(187) wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer;
(188) wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate a hydrostatic pressure differential between the wells;
(189) wherein the cell seeding port well is adapted to receive a biological sample of cells;
(190) wherein a first polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the inlet well and to control the flow rate of medium in the culture chamber;
(191) wherein a second polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and
(192) wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber.
(193) According to some embodiments, the device comprises a plurality of layers. The term “bottomless multi-well plate” as used herein refers to a multi-well plate without a bottom surface; and the term “bottomless wells” as used herein refers to wells of the multi-well plate without a bottom surface. According to some embodiments, the multi-well plate comprises at least 6, at least 12, at least 24, at least 48, at least 96, at least 384 or at least 1536 wells. According to some embodiments, the multi-well plate comprises 96 wells. According to some embodiments, the wells may have dimensions substantially same as the dimensions of the wells in plates currently commercially available for commercially available readers and dispensers. According to some embodiments, the multi-well plate has a substantially rectangular shape appropriate for commercially available readers and dispensers. According to some embodiments, the multi-well plate can have a shape different from rectangular.
(194) According to some embodiments, the multi-well plate may be constructed of polymeric materials. Exemplary polymers include, without limitation, hydrophilic polyethylenes, polystyrenes, polypropylenes, acrylates, methacrylates, polycarbonates, polysulfones, polyesterketones, poly- or cyclic olefins, polychlorotrifluoroethylene, and polyethylene therephthalate. According to some embodiments, the multi-well plate may be constructed of polystyrene. According to some embodiments, the multi-well plate may be constructed of inorganic polymer materials.
(195) According to some embodiments, four adjacent sequential wells of the multi-well plate comprise a culture chamber. According to some embodiments, the microfluidic device comprises 20 culture chambers with each culture chamber occupying four wells. According to some embodiments, a culture chamber comprises four adjacent sequential wells comprising, in sequential order, an inlet well, a cell seeding port well, a cell chamber well, and an outlet well. According to some embodiments, the inlet and outlet wells function as reservoirs for culture medium and to generate a hydrostatic pressure differential between the wells (ΔP). According to some embodiments, cells are plated through the cell seeding port well. According to some embodiments, the cell seeding port directs cell placement into the culture chamber.
(196) According to some embodiments, the device comprises one or more layers of pressure-sensitive adhesive (PSA), including one layer, two layers, three layers, four layers, or more of PSA. According to some embodiments, the device comprises three layers of PSA. According to some embodiments, the PSA is an acrylic hybrid PSA. According to some embodiments, the PSA is a clear polyester double-sided adhesive tape. According to some embodiments, the PSA is a 1 mm thick clear polyester film coated on both sides with an MA-69 acrylic hybrid medical grade adhesive. According to some embodiments, the PSA is about 5.6 mm thick. According to some embodiments, the PSA is from about 1 to about 10 mm thick, for example, about 1 mm thick, about 1.5 mm thick, about 2 mm thick, about 2.5 mm thick, about 3 mm thick, about 3.5 mm thick, about 4 mm thick, about 4.5 mm thick, about 5 mm thick, about 5.5 mm thick, about 6 mm thick, about 6.5 mm thick, about 7 mm thick, about 7.5 mm thick, about 8 mm thick, about 8.5 mm thick, about 9 mm thick, about 9.5 mm thick, or about 10 mm thick. According to some embodiments, the PSA is ARcare® 90106 (Adhesives Research, Inc., Glen Rock, Pa.). According to some embodiments, the PSA is micropatterned with a plurality of holes therethrough. The term “micropatterning” refers to a method of modifying the properties of cell culture substrates at sub-cellular scales, which can be used to restrict the location and shape of the substrate regions in which cells can attach (“micropatterns”). Engineered micropatterns can provide a micrometer-scale, soft, 3-dimensional, complex and dynamic microenvironment for individual cells or for multi-cellular arrangements. See Thery, M, J. Cell Sci. (2010) 123 (24): 4201-13).
(197) According to some embodiments, a first PSA layer is attached to the bottom surface of the multi-well plate. According to some embodiments, the first PSA layer is micropatterned to pattern the surface of the inlet and outlet wells and the cell seeding port well. According to some embodiments, the first PSA layer is patterned with a ring structure exhibited on each surface of the inlet, outlet, and cell seeding port wells. According to some embodiments, the first PSA layer maintains stable liquid droplets and prevents medium evaporation. According to some embodiments, the first PSA layer (1) holds the medium in the cell seeding port by surface tension during dynamic culture, and (2) prevents evaporation of liquid in the medium reservoir ports during device pre-treatment and static culture. According to some embodiments, the first PSA layer has a hole that is vertically aligned with the cell chamber well of the culture chamber.
(198) According to some embodiments, a polymer layer is attached to the bottom surface of the first PSA layer. According to some embodiments, the polymer layer comprises a polymer, for example, polydimethylsiloxane (PDMS), polystyrene, or the like. According to some embodiments, the polymer layer comprises a plurality of holes that are vertically aligned with the four adjacent sequential wells of the culture chamber. According to some embodiments, the holes aligned with the inlet, outlet, and cell seeding port well are each about 6 mm diameter. According to some embodiments, the hole aligned with to the cell chamber well is about 1.5 mm diameter. According to some embodiments, the polymer layer is plasma treated before adhesion to the adjacent layers of the device.
(199) According to some embodiments, a second PSA layer is attached to the bottom surface of the polymer layer. According to some embodiments, the second PSA layer comprises a plurality of holes that are vertically aligned with the four adjacent sequential wells of the culture chamber. According to some embodiments, the plurality of holes correspond in vertical placement and size with the holes in the polymer layer. According to some embodiments, the second PSA layer adheres and seals the polymer membranes below.
(200) According to some embodiments, the device comprises one or more polymer membranes. According to some embodiments, the device comprises two polymer membranes. According to some embodiments, the polymer membranes are embedded between two layers of PSA. According to some embodiments, the polymer membranes are embedded between the second and third layers of PSA. According to some embodiments, the first polymer membrane is vertically aligned with the inlet well of the culture chamber (See membrane circled in blue,
(201) According to some embodiments, a third PSA layer adheres to the bottom surface of the second PSA layer and the bottom surfaces of the polymer membranes. According to some embodiments, the third PSA layer adheres to the top surface of the glass plate. According to some embodiments, the third PSA layer contains a microchannel which connects the four adjacent sequential wells of the culture chamber. According to some embodiments, the third PSA layer comprises a hole vertically aligned with the cell chamber well that define the shape and dimensions of the bottom of the well. According to some embodiments, the hole in the third PSA layer is hexagonal in shape with a lateral surface area of 38.3 mm.sup.2, which is comparable to that of a typical 96 well plate (38.5 mm.sup.2). According to some embodiments, the thickness of the third PSA layer is 0.137 mm.
(202) According to some embodiments, the cell chamber well is connected to the cell seeding port well by a microchannel. According to some embodiments, the dimensions of the microchannel are about 0.5 mm in width and about 0.137 mm in depth.
(203) According to some embodiments, the glass plate provides optical access through the bottom of the culture chamber for cell characterization with plate readers. According to some embodiments, the glass plate is attached to a bottom of the third PSA layer to seal the multi-well plate culture device thereby forming a bottom surface thereof for the plurality of wells. According to some embodiments, the glass plate is about 1.2 mm-thick.
(204) According to some embodiments, the rocking platform maintains a medium flow rate in the culture chamber of about 0.46 μL/min to about 0.5 μL/min. According to some embodiments, during culture, the tilt or angle of the rocking platform (meaning the amount that the rocker platform tilts back and forth) is used to control medium flow. According to some embodiments, during culture, the tilt or angle of the rocking platform is used to control medium flow within about 10% (±10%).
(205) According to some embodiments, the device is configured to maintain a flow-induced shear stress of about 0.4 mPa. According to some embodiments, the device is configured to maintain a hydrostatic pressure differential between wells of about 67 Pa.
(206) II. An Ex Vivo Multiple Myeloma (MM) Cancer Niche Contained in a Device
(207) According to one aspect, the described invention provides an ex vivo multiple myeloma (MM) cancer niche contained in a device in which flow of minute amounts of liquids or dissolved gas molecules is controlled by microfluidics (a microfluidic device) comprising:
(208) (a) an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (bone marrow niche) comprising viable osteoblasts seeded on a surface of the microfluidic device and cultured to form 3D nodular structures that comprise a 3D bone-like tissue, the 3D bone-like tissue being characterized by an extracellular matrix secreted by the viable osteoblasts; and
(209) (b) a multiple myeloma tumor biospecimen comprising viable human multiple myeloma cells; the microfluidic device comprising, from top to bottom:
(210) (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber;
(211) (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber;
(212) (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer;
(213) (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer;
(214) (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer;
(215) (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device;
(216) (vii) a rocking platform for holding the multi-well plate, characterized by rocking speed and an adjustable rocking/tilt angle;
(217) wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well;
(218) wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer;
(219) wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate a hydrostatic pressure differential between the wells;
(220) wherein the cell seeding port is adapted to receive a biological sample of cells;
(221) wherein a first polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the inlet well and to control the flow rate of medium in the culture chamber;
(222) wherein a second polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and
(223) wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber;
(224) wherein the microfluidic device is effective to control flow of minute amounts of the liquids, nutrients and dissolved gas molecules in the MM cancer niche;
(225) wherein the ex vivo MM cancer niche is responsive to changing conditions of perfusion of the ex vivo MM cancer niche by the minute amounts of liquids, nutrients and dissolved gas molecules in the microfluidic device; and
(226) wherein formation of an ex vivo MM microenvironment in the microfluidic device is effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche in vivo and to maintain viability of the MM cells in the MM cancer niche in the microfluidic device ex vivo.
(227) According to some embodiments, the multiwell plate-based microfluidic perfusion culture device is effective to model multi-cellular microenvironments. According to some embodiments, the multiwell plate-based microfluidic perfusion culture device is effective to model perfusion effects on cell interactions. According to some embodiments, the multiwell plate-based microfluidic perfusion culture device is effective to model perfusion-induced shear stress on cell responses.
(228) According to some embodiments, the biospecimen comprising human myeloma cells further comprises human plasma autologous to the human myeloma cells. According to some embodiments, the microenvironment perfused by nutrients and dissolved gas molecules of the ex vivo bone marrow (BM) niche is effective for propagation of the human myeloma cells. According to some embodiments, the MM niche further comprises osteoblast-secreted and MM cell-secreted soluble cytokines and growth factors. According to some embodiments, the MM cells are adherent to osteoblasts of the BM niche. According to some embodiments, the MM cells adhere to the osteoblasts of the BM niche by cell-cell interaction. According to some embodiments, the human myeloma cells are cellular components of a bone marrow aspirate. According to some embodiments, the human myeloma cells are cellular components of peripheral blood. According to some embodiments, the human myeloma cells are cellular components of a core biopsy. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective for propagation of the human myeloma cells for at least 4 days. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective for propagation of the human myeloma cells for about 1 day to about 30 days, including, for example, about 1 day, about 2 days, about 3 days, about 4 days, about 5 days, about 6 days, about 7 days, about 8 days, about 9 days, about 10 days, about 11 days, about 12 days, about 13 days, about 14 days, about 15 days, about 16 days, about 17 days, about 18 days, about 19 days, about 20 days, about 25 days, or about 30 days. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective for propagation of the human myeloma cells for at least about 4 days to at least about 3 weeks. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective to maintain the viability and proliferative capacity of patient-derived MM cells for at least 3 weeks. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective to maintain the viability and proliferative capacity of patient-derived MM cells for at least about 1 day to at least about 4 weeks, including, for example, at least about 1 day, about 2 days, about 3 days, about 4 days, about 5 days, about 6 days, at least about 1 week, at least about 2 weeks, at least about 3 weeks, or at least about 4 weeks. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes about 1×10.sup.4 mononuclear cells, about 2×10.sup.4 mononuclear cells, about 3×10.sup.4 mononuclear cells, about 4×10.sup.4 mononuclear cells, about 5×10.sup.4 mononuclear cells, about 6×10.sup.4 mononuclear cells, about 7×10.sup.4 mononuclear cells, about 8×10.sup.4 mononuclear cells, about 9×10.sup.4 mononuclear cells, about or about 1×10.sup.5 mononuclear cells. According to some embodiments, propagation of the MM cells is capable of producing deterioration of the 3D ossified tissue of the BM niche.
(229) According to another embodiment, the ex vivo multiple myeloma (MM) cancer niche is prepared by:
(230) (a) constructing an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (bone marrow niche) in the microfluidic device by:
(231) (i) seeding a surface of the microfluidic device with viable osteoblasts; and
(232) (ii) culturing the cells to form 3D nodular structures that comprise a 3D bone-like tissue:
(233) the 3D bone-like tissue being characterized by an extracellular matrix secreted by the viable adherent osteoblasts;
(234) (b) preparing a multiple myeloma tumor biospecimen composition comprising viable human multiple myeloma cells from a subject and plasma autologous to the subject; and
(235) (c) seeding the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules with the MM tumor biospecimen, and forming an ex vivo microenvironment in the microfluidics device effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche in vivo and to maintain viability of the MM cells in the MM cancer niche in the microfluidics device ex vivo;
(236) wherein the microfluidic device is effective to control flow of minute amounts of the liquids, nutrients and dissolved gas molecules in the MM cancer niche;
(237) wherein the ex vivo MM cancer niche in the microfluidic device is responsive to changing conditions of perfusion of the ex vivo MM cancer niche by the minute amounts of liquids, nutrients and dissolved gas molecules in the microfluidics device.
(238) According to some embodiments of the method, the MM niche further comprises osteoblast-secreted and MM cell-secreted soluble cytokines and growth factors. According to some embodiments, the MM cells are adherent to osteoblasts of the BM niche. According to some embodiments, the MM cells adhere to the osteoblasts of the BM niche by cell-cell interaction. According to some embodiments, the human myeloma cells are cellular components of a bone marrow aspirate. According to some embodiments, the human myeloma cells are cellular components of peripheral blood. According to some embodiments, the human myeloma cells are cellular components of a core biopsy. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective for propagation of the human myeloma cells for at least 4 days. According to some embodiments, the ex vivo multiple myeloma (MM) cancer niche is effective to maintain the viability and proliferative capacity of patient-derived MM cells for at least 3 weeks. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes about 1×10.sup.4 mononuclear cells, about 2×10.sup.4 mononuclear cells, about 3×10.sup.4 mononuclear cells, about 4×10.sup.4 mononuclear cells, about 5×10.sup.4 mononuclear cells, about 6×10.sup.4 mononuclear cells, about 7×10.sup.4 mononuclear cells, about 8×10.sup.4 mononuclear cells, about 9×10.sup.4 mononuclear cells, about or about 1×10.sup.5 mononuclear cells. According to some embodiments, propagation of the MM cells is effective to produce deterioration of the 3D ossified tissue of the BM niche.
(239) III. A Method for Assessing Chemotherapeutic Efficacy of a Test Chemotherapeutic Agent on Viable Human Multiple Myeloma Cells
(240) According to another aspect, the described invention provides a method for assessing chemotherapeutic efficacy of a test chemotherapeutic agent on viable human multiple myeloma cells seeded in an ex vivo microenvironment effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche and to maintain viability of the myeloma cells (MM cancer niche) obtained from a subject comprising:
(241) (a) preparing an in vitro microfluidic device comprising, from top to bottom:
(242) (i) a bottomless multi-well plate comprising a plurality of bottomless wells, wherein four adjacent sequential wells comprise a culture chamber;
(243) (ii) a first micropatterned pressure-sensitive adhesive (PSA) layer attached to a bottom surface of the culture chamber;
(244) (iii) a polymer layer comprising four holes vertically aligned with the four adjacent sequential wells of the culture chamber, the polymer layer being attached to a bottom surface of the first micropatterned PSA layer;
(245) (iv) a second micropatterned PSA layer attached to a bottom surface of the polymer layer;
(246) (v) a third micropatterned PSA layer that connects the four adjacent sequential wells, wherein the third micropatterned PSA layer is attached to a bottom surface of the second micropatterned PSA layer;
(247) (vi) a transparent, optical grade glass layer attached to the bottom surface of the third micropatterned PSA layer that forms a bottom surface for the plurality of wells and that seals the multi-well plate-based pumpless perfusion culture device;
(248) (vii) a rocking platform for holding the multi-well plate, characterized by rocking speed and an adjustable rocking/tilt angle;
(249) wherein the four adjacent sequential wells that comprise the culture chamber comprise an inlet well, a cell seeding port well, a cell chamber well, and an outlet well;
(250) wherein the first micropatterned PSA layer is effective to maintain stable liquid droplets and to prevent medium evaporation by covering the inlet well, cell seeding port well, and outlet well of the first polymer layer;
(251) wherein the inlet and outlet wells are configured as reservoirs for culture medium and to generate hydrostatic pressure differential between the wells;
(252) wherein the cell seeding port is adapted to receive a biological sample of cells;
(253) wherein a first polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the inlet well and to control the flow rate of medium in the culture chamber;
(254) wherein a second polymer membrane between the second micropatterned PSA layer and third micropatterned PSA layer is effective to cover the cell chamber well and to hold the medium within the culture chamber during cell seeding and culture; and
(255) wherein the second micropatterned PSA layer is effective to adhere and seal the first and second polymer membranes in the culture chamber;
(256) (b) constructing an ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules (bone marrow niche) by
(257) (1) seeding a surface of the culture chamber of the in vitro microfluidic device of (a) with a population of cells comprising osteoblasts;
(258) (2) culturing the cells with a culture medium through the channel region for a time effective for the cells to form a confluent layer on the bottom surface of the channel, to then form multiple cell layers and to then form 3D nodular structures that comprise a 3D bone-like tissue;
(259) the 3D bone like tissue being characterized by a mineralized bone-like tissue comprising (a) viable osteoblasts self-organized into cohesive multiple cell layers and (b) an extracellular matrix secreted by the viable adherent osteoblasts;
(260) (c) preparing a multiple myeloma tumor biospecimen composition by:
(261) (1) acquiring a multiple myeloma tumor biospecimen from the subject, wherein the biospecimen comprises viable multiple myeloma cells; and
(262) (2) adding plasma autologous to the subject to the viable multiple myeloma cells;
(263) (3) bringing the biospecimen composition of (c)(2) comprising viable MM cells in contact with the osteoblasts of the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules to seed the ex vivo bone marrow microenvironment with the viable MM cells, the ex vivo bone marrow microenvironment perfused by nutrients and dissolved gas molecules and the seeded MM cells in contact with the osteoblasts of the ex vivo bone marrow microenvironment forming an ex vivo microenvironment effective to recapitulate spatial and temporal characteristics of a multiple myeloma cancer niche and to maintain viability of the human MM cells (MM cancer niche); and
(264) (d) testing chemotherapeutic efficacy of a chemotherapeutic agent on the viable human MM cells maintained in the ex vivo MM cancer niche of (c)(3) in the test chamber of (a) by
(265) (1) contacting the ex vivo MM cancer niche comprising viable human myeloma cells with a test chemotherapeutic agent; and
(266) (2) comparing at least one of viability and level of apoptosis of the MM cells in the MM cancer niche in the presence of the test chemotherapeutic agent to an untreated control; and
(267) (e) initiating therapy to treat the MM in the patient with the test chemotherapeutic agent if the test chemotherapeutic agent is effective to significantly (P<0.05) reduce viability of the MM cells or to increase apoptosis of the MM cells, compared to the untreated control.
(268) The term “chemotherapy”, in its most general sense, refers to the treatment of disease by means of chemical substances or drugs. In popular usage, it refers to antineoplastic drugs used alone or in combination as a cytotoxic standardized regimen to treat cancer. In its non-oncological use, “chemotherapy” may refer, for example, to antibiotics.
(269) Chemotherapy is employed as part of a multimodality approach to the initial treatment of many tumors, including, but not limited to, MM, breast cancer, colon cancer and locally advanced stages of head and neck, lung, cervical, and esophageal cancer, soft tissue sarcomas, pediatric solid tumors and the like. The basic approaches to cancer treatment are constantly changing. Newer therapies have improved patient survival, and, in some cases, turned cancer into a chronic disease.
(270) The majority of chemotherapeutic drugs can be divided into several categories including, but not limited to, (1) alkylating agents; (2) antimetabolites; (3) natural products; (4) hormones and related agents; (5) biologics; (6) miscellaneous agents; and (7) those effective in treating MM.
(271) 1. Alkylating Agents and Their Side-Effects
(272) Alkylating agents used in chemotherapy encompass a diverse group of chemicals that have in common the capacity to contribute, under physiological conditions, alkyl groups to biologically vital macromolecules, such as DNA. For several of the most valuable agents, such as cyclophosphamides and nitrosoureas, the active alkylating moieties are generated in vivo after complex metabolic reactions.
(273) As shown in Table 3, there are five major types of alkylating agents used in chemotherapy of neoplastic diseases: (1) nitrogen mustards; (2) ethylenimines; (3) alkyl sulfonates; (4) nitrosoureas; and (5) triazenes.
(274) TABLE-US-00003 TABLE 3 Examples of Alkylating Agents Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Nitrogen Mustard Cyclophosamide Breast cancer; different types of In the liver, cyclophosphamide is (Cytoxan ®) leukemia including acute converted to the active metabolites lymphoblastic leukemia (“ALL”), aldophosphamide and acute myeloid leukemia phosphoramide mustard, which (“AML”), chronic lymphocytic bind to DNA, thereby inhibiting leukemia (“CLL”), and chronic DNA replication and initiating myelogenous leukemia (“CML”); cell death Hodgkin lymphoma; multiple myeloma; mycosis fungoides; neuroblastoma; non-Hodgkin lymphoma; ovarian cancer; and retinoblastoma Nitrogen Mustard Ifosamide Acute and chronic lymphocytic Alkylates and forms DNA (Mitoxana ®, leukemias; Hodgkin's disease; crosslinks, thereby preventing Ifex ®) non-Hodgkin's lymphomas; DNA strand separation and DNA multiple myeloma; replication neuroblastoma; breast, ovary, lung cancer; Wilm's tumor; cervix, testis cancer; soft-tissue sarcomas Nitrogen Mustard Melphalan Multiple myeloma; breast, Alkylates DNA at the N7 position (L-sarcolysin; ovarian cancer of guanine and induces DNA inter- Alkeran ®) strand cross-linkages, resulting in the inhibition of DNA and RNA synthesis and cytotoxicity against both dividing and non-dividing tumor cells Alkyl Sulfonate Busulfan Chronic granulocytic leukemia Appears to act through the (Myleran ®) alkylation of DNA Nitrosourea Carmustine Hodgkin's disease, non-Hodgkin's Alkylates and cross-links DNA (BiCNU ®; lymphomas, primary brain during all phases of the cell cycle, Gliadel Wafer ®) tumors, multiple myeloma, resulting in disruption of DNA malignant myeloma function, cell cycle arrest, and apoptosis. This agent also carbamoylates proteins, including DNA repair enzymes, resulting in an enhanced cytotoxic effect Triazene Temozolomide Glioma; malignant melanoma Temozolomide is converted at (Temodar ®) physiologic pH to the short-lived active compound, monomethyl triazeno imidazole carboxamide (MTIC). The cytotoxicity of MTIC is due primarily to methylation of DNA which results in inhibition of DNA replication
(275) Chemotherapeutic alkylating agents become strong electrophiles through the formation of carbonium ion intermediates or of transition complexes with the target molecules. This results in the formation of covalent linkages by alkylation of various nucleophilic moieties, such as phosphate, amino, sulfhydryl, hydroxyl, carboxyl, and imidazole groups. The chemotherapeutic and cytotoxic effects of alkylating agents are related directly to alkylation of DNA, which has several sites that are susceptible to the formation of a covalent bond.
(276) The most important pharmacological actions of alkylating agents are those that disturb DNA synthesis and cell division. The capacity of these drugs to interfere with DNA integrity and function in rapidly proliferating tissues provides the basis for their therapeutic applications and for many of their toxic properties. Whereas certain alkylating agents may have damaging effects on tissues with normally low mitotic indices, such as the liver, kidney, and mature lymphocytes, they are most cytotoxic to rapidly proliferating tissues in which a large proportion of the cells are in division. These alkylating compounds may readily alkylate nondividing cells, but their cytotoxicity is enhanced markedly if DNA is damaged in cells programmed to divide. In contrast to many other antineoplastic agents, the effects of the alkylating drugs, although dependent on proliferation, are not cell-cycle-specific, and the drugs may act on cells at any stage of the cycle. However, the toxicity is usually expressed when the cell enters the S phase and the progression through the cycle is blocked. DNA alkylation itself may not be a lethal event if DNA repair enzymes can correct the lesions in DNA prior to the next cellular division.
(277) Alkylating agents differ in their patterns of antitumor activity and in the sites and severity of their side effects. Most cause dose-limiting toxicity to bone marrow elements and to intestinal mucosa and alopecia. Most alkylating agents, including nitrogen mustard, melphalan, chloramucil, cyclophosphamide, and ifosfamide, produce an acute myelosuppression. Cyclophosphamide has lesser effects on peripheral blood platelet counts than do other alkylating agents. Busuflan suppresses all blood elements and may produce a prolonged and cumulative myelosuppression lasting months. BCNU and other chloroethylnitrosoureas cause delayed and prolonged suppression of both platelets and granulocytes.
(278) Alkylating agents also suppress both cellular and humoral immunity, although immunosuppression is reversible at doses used in most anticancer protocols.
(279) In addition to effects on the hematopoietic system, alkylating agents are highly toxic to dividing mucosal cells. The mucosal effects are particularly significant in high-dose chemotherapy protocols associated with bone marrow reconstitution; they may predispose a patient to bacterial sepsis arising from the gastrointestinal tract. Generally, mucosal and bone marrow toxicities occur predictably with conventional doses of these drugs; however other organ toxicities, although less common, can be irreversible and sometimes lethal. All alkylating agents have caused pulmonary fibrosis.
(280) Heart failure that occurs after high-dose cyclophosphamide, ifosfamide, or mitomycin treatment is manifested by neurohumoral activation without concomitant cardiomyocyte necrosis. Mild functional mitral regurgitation also may develop in cyclophosphamide-treated patients (Zver, S. et al., Intl J. Hematol. 85(5): 408-14 (2007)).
(281) In high-dose protocols, a number of toxicities not seen at conventional doses become dose-limiting. For example, endothelial damage that may precipitate venoocclusive disease of the liver; the nitrosoureas, after multiple cycles of therapy, may lead to renal failure; ifosamide frequently causes a central neurotoxicity (manifest in the form of nausea and vomiting), with seizures, coma and sometimes death. Cyclophosamide and ifosfamide release a nephrotoxic and urotoxic metabolite, acrolein, which causes severe hemorrhagic cystitis, an undesirable effect that in high-dose regimens can be prevented by coadministration of mesna (2-mercaptoethanesulfonate).
(282) The more unstable alkylating agents (particularly nitrogen mustards and the nitrosoureas) have strong vesicant properties, damage veins with repeated use, and if extravasated, produce ulceration.
(283) As a class of drugs, the alkylating agents are highly leukomogenic. Acute nonlymphocytic leukemia may affect up to 5% of patients treated on regimens containing alkylating drugs. Melphalan, the nitrosoureas, and procarbazine have the greatest propensity to cause leukemia. Additionally, all alkylating agents have toxic effects on the male and female reproductive systems.
(284) Examples of alklyating agents include, but are not limited to, cyclophosamide (Cytotaxan®), a synthetic alkylating agent chemically related to the nitrogen mustards; temozolomide (Temodar®), a triazene analog of dacarbazine; busulfan (Myleran®), a synthetic derivative of dimethane sulfonate; ifosfamide (Ifex®), a synthetic analog of cyclophosaphamide; mesna (Mesnex®), a sulfhydryl compound; melphalan hydrochloride (Alkeran®), an orally available phenylalanine derivative of nitrogen mustard; and the nitrosoureas carmustine (BiCNU®) and lomustine (CEENU®).
(285) 2. Antimetabolites
(286) Antimetabolites are a class of drugs that interfere with DNA and RNA growth by preventing purines (azathioprine, mercaptopurine) or pyrimidine from becoming incorporated into DNA during the S phase of the cell cycle, thus stopping normal development and division. Antimetabolites commonly are used to treat leukemias, tumors of the breast, ovary and the intestinal tract, as well as other cancers.
(287) Antimetabolites include folic acid analogs, such as methotrexate and aminopterin; pyrimidine analogs, such as fluorouracil and fluorodeoxyuridine; cytarabine (cytosine arabinoside); and purine analogs, such as mercaptopurine, thioguanine, fludarabine phosphate, pentostatin (2′-deoxycoformycin), and cladribine. Table 4 presents examples of some antimetabolites useful for treating neoplastic diseases.
(288) TABLE-US-00004 TABLE 4 Examples of Antimetabolites Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Pyrimidine 5-fluorouracil Palliative treatment of colorectal Fluorouracil and its metabolites Analog (fluorouracil; 5-FU) cancer, breast cancer, stomach possess a number of different cancer, and pancreatic cancer. In mechanisms of action. In vivo, combination with other drugs, it fluorouracil is converted to the is used to treat locally advanced active metabolite 5-fluoroxyuridine squamous cell carcinoma of the monophosphate (F-UMP); replacing head and neck, gastric uracil, F-UMP incorporates into adenocarcinoma, and Stage III RNA and inhibits RNA processing, colorectal cancer thereby inhibiting cell growth. Another active metabolite, 5-5- fluoro-2′-deoxyuridine-5′- Omonophosphate (F-dUMP), inhibits thymidylate synthase, resulting in the depletion of thymidine triphosphate (TTP), one of the four nucleotide triphosphates used in the in vivo synthesis of DNA. Other fluorouracil metabolites incorporate into both RNA and DNA; incorporation into RNA results in major effects on both RNA processing and functions Pyrimidine Capecitabine Metastatic (Stage III) colorectal As a prodrug, capecitabine is Analog (Xeloda ®) cancer and metastatic breast selectively activated by tumor cells cancer to its cytotoxic moiety, 5- fluorouracil (5-FU); subsequently, 5-FU is metabolized to two active metabolites, 5-fluoro-2- deoxyuridine monophosphate (F- dUMP) and 5-fluorouridine triphosphate (FUTP) by both tumor cells and normal cells. F-dUMP inhibits DNA synthesis and cell division by reducing normal thymidine production, while FUTP inhibits RNA and protein synthesis by competing with uridine triphosphate for incorporation into the RNA strand Pyrimidine Gemcitabine Pancreatic cancer, ovarian Gemcitabine is converted Analog (gemcitabine cancer, breast cancer, and non- intracellularly to the active hydrochloride, small cell lung cancer metabolites difluorodeoxycytidine Gemzar ®) di- and triphosphate (dFdCDP, dFdCTP). dFdCDP inhibits ribonucleotide reductase, thereby decreasing the deoxynucleotide pool available for DNA synthesis; dFdCTP is incorporated into DNA, resulting in DNA strand termination and apoptosis Pyrimidine Floxuridine (FUDR) Palliative treatment of Inhibits thymidylate synthetase, Analog gastrointestinal adenocarcinoma resulting in disruption of DNA metastatic to the liver synthesis and cytotoxicity. This agent is also metabolized to fluorouracil and other metabolites that can be incorporated into RNA and inhibit the utilization of preformed uracil in RNA synthesis Purine Analog 2-chlorodeoxy- Myelodysplastic syndromes Incorporates into DNA and inhibits adenosine including refractory anemia and DNA methyltransferase, resulting in (cladribine, chronic myelomonocytic hypomethylation of DNA and intra- Leustatin ®) leukemia S-phase arrest of DNA replication Pyrimidine Decitabine Glioma; malignant melanoma Temozolomide is converted at Analog (Dacogen ®) physiologic pH to the short-lived active compound, monomethyl triazeno imidazole carboxamide (MT1C). The cytotoxicity of MTIC is due primarily to methylation of DNA which results in inhibition of DNA replication Purine Analog Fludarabine Refractory B-cell chronic Blocks cells from making DNA; phosphate lymphocytic leukemia purine antagonist and a type of (Fludara ®) ribonucleotide reductase inhibitor Purine Analog Mercaptopurine Acute lymphocytic, acute A thiopurine-derivative (6-mercaptopurine; granulocytic, and chronic antimetabolite with antineoplastic 6-MP; Purinethol ®) granulocytic leukemias and immunosuppressive activities Purine Analog 2′-deoxycoformycin Hairy cell laukemia Binds to and inhibits adenine (Nipent ®, deaminase (ADA), an enzyme pentostatin) essential to purine metabolism Purine Analog Dacarbazine (DTIC- Metastatic melanoma, Hodgkin's Alkylates and cross-links DNA Dome ®) lymphoma during all phases of the cell cycle, resulting in disruption of DNA function, cell cycle arrest, and apoptosis Folic Acid Pemetrexed Mesothelioma, non-small cell Binds to and inhibits the enzyme Analog disodium (Alimta ®) lung cancer thymidylate synthase (TS) which catalyses the methylation of 2′- deoxyuridine-5′-monophosphate (dUMP) to 2′-deoxythymidine-5′- monophosphate (dTMP), an essential precursor in DNA synthesis Folic Acid Methotrexate Chorioadenoma destruens, Binds to and inhibits the DHFR, Analog (methotrexate choriocarcinoma, acute resulting in inhibition of purine sodium, lymphoblastic leukemia, breast nucleotide and thymidylate amethopterin, cancer, lung cancer, certain synthesis and, subsequently, Folex ®, Mexate ®, types of head and neck cancer, inhibition of DNA and RNA Rheumatrex ®) advanced non-Hodgkin syntheses lymphoma, and osteosarcoma; rheumatoid arthritis and psoriasis Cytidine analog Cytarabine Acute non-lymphatic leukemia, Antimetabolite analog of cytidine (cytosine acute lymphocytic leukemia, with a modified sugar moiety arabinoside) blast phase chronic myelocytic (arabinose instead of ribose). leukemia Cytarabine is converted to the triphosphate form within the cell and then competes with cytidine for incorporation into DNA. Because the arabinose sugar sterically hinders the rotation of the molecule within DNA, DNA replication ceases, specifically during the S phase of the cell cycle. This agent also inhibits DNA polymerase, resulting in a decrease in DNA replication and repair
2.1. Anti-Folates and Their Side-Effects
(289) Folic acid is an essential dietary factor from which is derived a series of tetrahydrofolate cofactors that provide single carbon groups for the synthesis of precursors of DNA (thymidylate and purines) and RNA (purines). The enzyme dihydrofolate reductase (“DHFR”) is the primary site of action of most anti-folates. Inhibition of DHFR leads to toxic effects through partial depletion of tetrahydrofolate cofactors that are required for the synthesis of purines and thymidylate.
(290) Examples of anti-folates include, but are not limited to, methotrexate and Pemetrexed disodium. The most commonly used anti-folate is methotrexate (methotrexate sodium, amethopterin, Folex®, Mexate®, Rheumatrex®), which is an antimetabolite and antifolate agent with antineoplastic and immunosuppressant activities. Pemetrexed disodium (Alimta®) is the disodium salt of a synthetic pyrimidine-based antifolate.
(291) 2.2. Pyrmidine Analogs and Their Side-Effects
(292) Pyrmidine analogs are a diverse group of drugs with the capacity to inhibit biosynthesis of pyrimidine nucleotides or to mimic these natural metabolites to such an extent that the analogs interfere with the synthesis or function of nucleic acids. Drugs in this group have been employed in the treatment of diverse afflictions, including neoplastic diseases, psoriasis and infections caused by fungi and DNA-containing viruses.
(293) Examples of pyrimidine analogs include, but are not limited to, 5-Fluorouracil (fluorouracil, 5-FU, Adrucil®, Efudex®, Fluorplex®), an antimetabolite fluoropyrimidine analog of the nucleoside pyrimidine with antineoplastic activity; floxuridine, a fluorinated pyrimidine monophosphate analogue of 5-fluoro-2′-deoxyuridine-5′-phosphate (FUDR-MP) with antineoplastic activity; capecitabine (Xeloda®), an antineoplastic fluoropyrimidine carbamate; and gemcitabine hydrochloride (Gemzar®), the salt of an analog of the antimetabolite nucleoside deoxycytidine with antineoplastic activity.
(294) 2.3. Purine Analogs and Their Side-Effects
(295) Several analogs of natural purine bases, nucleosides and nucleotides useful in the treatment of malignant diseases (mercaptopurine, thioguanine) and for immunosuppressive (azatioprine) and antiviral (acyclovir, ganciclovir, vidarabine, zidovudine) therapies have been identified.
(296) The purine analogs mercaptopurine and its derivative azatioprine are among the most clinically useful drugs of the antimetabolite class. Examples of purine analogs include, but are not limited to, mercaptopurine (Purinethol®), a thiopurine-derivative antimetabolite with antineoplastic and immunosuppressive activities; decitabine (Dacogen®), a cytidine antimetabolite analogue with potential antineoplastic activity; and dacarbazine (DTIC-DOME®), a triazene derivative with antineoplastic activity.
(297) 3. Natural Products and Their Side-Effects
(298) Many chemotherapeutic agents are found or derived from natural resources. Table 5 shows examples of chemotherapeutic drugs classified as natural products.
(299) TABLE-US-00005 TABLE 5 Examples of Natural Products Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Vinca Alkaloid Vincristine Acute lymphocytic leukemia, Binds irreversibly to microtubules (vincristine sulfate) neuroblastoma, Wilm's tumor, and spindle proteins in S phase of rhabdomyosarcoma, Hodgkin's the cell cycle and interferes with the disease, non-Hodgkin's formation of the mitotic spindle, lymphomas, small-cell lung thereby arresting tumor cells in cancer metaphase Vinca Alkaloid Vinblastine Hodgkin's disease, non- Binds to tubulin and inhibits (vinblastine Hodgkin's lymphomas, microtubule formation, resulting in sulfate, VLB) breast and testis cancer disruption of mitotic spindle assembly and arrest of tumor cells in the M phase of the cell cycle Vinca Alkaloid Vinorelbine Advanced non-small cell lung Binds to tubulin, thereby inhibiting tartrate cancer tubulin polymerization into (Navelbine ®) microtubules and spindle formation and resulting in apoptosis of susceptible cancer cells Taxane Paclitaxel Ovarian, breast, lung, head and Inhibitor of mitosis, differing from (Taxol ®) neck cancer; used in the vinca alkaloids and colchicine combination therapy of derivatives in that it promotes rather cisplatin-refractory ovarian, than inhibits microtubule formation breast, (non-small cell) lung, esophagus, bladder, and head and neck cancers Epothilone Ixabepilone Non-Hodgkin's lymphoma; Binds to tubulin and promotes (Ixempra ®, INN, breast cancer tubulin polymerization and azaepothilone B) microtubule stabilization, thereby arresting cells in the G2-M phase of the cell cycle and inducing tumor cell apoptosis Anthracycline Daunorubicin Acute granulocytic and acute Daunombicin exhibits cytotoxic (Cerubidine ®, lymphocytic leukemias activity through topoisomerase- daunomycin, mediated interaction with DNA, rubidomycin) thereby inhibiting DNA replication and repair and RNA and protein synthesis Anthracycline Epirubicin Breast cancer Intercalates into DNA and interacts (Ellence ®) with topoisomerase II, thereby inhibiting DNA replication and repair and RNA and protein synthesis Anthracycline Doxorubicin Soft-tissue, osteogenic, and Intercalates between base pairs in (Doxil ®, other sarcomas; Hodgkin's the DNA helix, thereby preventing doxorubicin disease, non-Hodgkin's DNA replication and ultimately hydrochloride, lymphomas; acute leukemias; inhibiting protein synthesis; inhibits Adriamycin ®, breast, topoisomerase II which results in an Rubex ®) genitourinary, thyroid, lung, increased and stabilized cleavable stomach cancer; neuroblastoma enzyme-DNA linked complex during DNA replication and subsequently prevents the ligation of the nucleotide strand after double-strand breakage Anthracycline Idarubicin Acute myeloid leukemia Intercalates into DNA and interferes (idarubicin with the activity of topoisomerase hydrochloride, II, thereby inhibiting DNA Idamycin PFS ®) replication, RNA transcription and protein synthesis Anthracenedione Mitoxantrone Acute granulocytic leukemia, Stimulates the formation of stand (Novantrone ®) breast and prostate cancer breaks in DNA (mediated by topoisomerase II) and also intercalating with DNA Antibiotic Mitomycin Stomach, cervix, colon, breast, Bioreduced mitomycin C generates (mitocyin C; pancreas, bladder, head and neck oxygen radicals, alkylates DNA, Mutamycin ®) cancers and produces interstrand DNA cross-links, thereby inhibiting DNA synthesis. Preferentially toxic to hypoxic cells, mitomycin C also inhibits RNA and protein synthesis at high concentrations Camptothecin Irinotecan Ovarian cancer, small cell lung Prodrug is converted to a (Camptosar ®, cancer, colon cancer biologically active metabolite 7- irinotecan ethyl-10-hydroxy-camptothecin hydrochloride (SN-38) by a carboxylesterase- converting enzyme. One thousand- fold more potent than its parent compound irinotecan, SN-38 inhibits topoisomerase I activity by stabilizing the cleavable complex between topoisomerase I and DNA, resulting in DNA breaks that inhibit DNA replication and trigger apoptotic cell death Epipodophyllotoxin Etoposide Testis, small cell lung and other Binds to and inhibits topoisomerase (VePesid ®) lung, breast cancer, Hodgkin's II and its function in ligating disease, non-Hodgkin's cleaved DNA molecules, resulting lymphomas, acute granulocytic in the accumulation of single- or leukemia, Kaposi's sarcoma double-stranded DNA breaks, the inhibition of DNA replication and transcription, and apoptotic cell death Epipodophyllotoxin Teniposide Testis, small-cell lung and other Forms a ternary complex with the (Vumon CO) lung, breast cancer; Hodgkin's enzyme topoisomerase II and DNA, disease, non-Hodgkin's resulting in dose-dependent single- lymphomas, acute granulocytic and double-stranded breaks in leukemia, Kaposi's sarcoma DNA, DNA: protein cross-links, inhibition of DNA strand religation, and cytotoxicity Epipodophyllotoxin Etoposide Testicular tumors, small cell Binds to the enzyme topoisomerase phosphate lung cancer II, inducing double-strand DNA (Etopophos ®) breaks, inhibiting DNA repair, and resulting in decreased DNA synthesis and tumor cell proliferation. Cells in the S and G2 phases of the cell cycle are most sensitive to this agent. Antibiotic Amphotericin B Induction chemotherapy for Binds to ergosterol, an essential childhood acute leukemia component of the fungal cell membrane, resulting in depolarization of the membrane; alterations in cell membrane permeability and leakage of important intracellular components; and cell rupture. This agent may also induce oxidative damage in fungal cells and has been reported to stimulate host immune cells
3.1. Antimitotic Drugs
3.1.1. Vinca Alkaloids and Their Side-Effects
(300) The vinca alkaloids, cell-cycle-specific agents that, in common with other drugs, such as colchicine, podophyllotoxin, and taxanes, block cells in mitosis, exerts their biological activities by specifically binding to tubulin, thereby blocking the ability of protein to polymerize into microtubules, and arresting cell division in metaphase through disruption of the microtubules of the mitotic apparatus. In the absence of an intact mitotic spindle, the chromosomes may disperse throughout the cytoplasm or may clump in unusual groupings. Both normal and malignant cells exposed to vinca alkaloids undergo changes characteristic of apoptosis.
(301) Examples of vinca alkaloids include, but are not limited to, vincristine sulfate, a salt of a natural alkaloid isolated from the plant Vinca rosea Linn; vinblastine, a natural alkaloid isolated from the plant Vinca rosea Linn; and vinorelbine. Both vincristine and vinblastine, as well as the analog vinorelbine, have potent and selective antitumor effects, although their actions on normal tissue differ significantly.
(302) 3.1.2. Taxanes
(303) The taxanes include, for example, but not limited to, paclitaxel, extracted from the Pacific yew tree Taxus brevifolia, and docetaxel (Taxotere®), a semi-synthetic, second-generation taxane derived from a compound found in the European yew tree Taxus baccata.
(304) 3.2. Epipodophyllotoxins and Their Side-Effects
(305) Podophyllotoxin is the active principle extracted from the mandrake plant Podophyllum peltatum from which two semisynthetic glycosides, etoposide and teniposide, have been developed.
(306) 3.3. Camptothecin Analogs and Their Side-Effects
(307) Camptothecins target the enzyme topoisomerase I. The parent compound, camptothecin, was first isolated from the Chinese tree Camptotheca acuminata. Although the parent camptothecin compound demonstrated antitumor activity, its severe and unpredictable toxicity, principally myelosuppression and hemorrhagic cystitis limited its use. The most widely used camptothecin analogs are irinotecan and toptecan, which are less toxic and more soluble.
(308) 3.4. Anti-Tumor Antibiotics
(309) Antitumor antibiotics are compounds that have cytotoxic as well as antimicrobial properties. Most commonly used in neoplastic disease treatment are the actinomycins and anthracyclines.
(310) 3.4.1. Actinomycin
(311) An exemplary actinomycin includes Dactinomycin (Actinomycin D), produced by Streptomyces parvullus. This highly toxic agent inhibits rapidly proliferating cells of normal and neoplastic origin.
(312) 3.4.2. Anthracyclines
(313) The anthracycline antibiotics and their derivatives are produced by the fungus Streptomyces peucetius var. caesius. Anthracyclines and anthracenediones can intercalate with DNA. Accordingly, many functions of DNA are affected, including DNA and RNA synthesis. Single-strand and double-strand breaks occur, as does sister chromatid exchange; thus these compounds are both mutagenic and carcinogenic. Scission of DNA is believed to be mediated by drug binding to DNA and topoisomerase II that prevents the resealing of DNA breaks created by the enzyme.
(314) Examples of anthracyclines include, but are not limited to, idarubicin hydrochloride, a semisynthetic 4-demethoxy analog of daunorubicin (daunorubicin hydrochloride, daunomycin, rubidomycin; Cerubidine®); doxorubicin (doxorubicin hydrochloride, Adriamycin®, Rubex®); as well as several analogs of doxorubicin including valrubicin (Valstar®) (for intravescial therapy of BCG-refractory urinary bladder carcinoma) and epirubicin (4′-epidxorubicin, Ellence®) (as a component of adjuvant therapy following resection of early lymph-node-positive breast cancer).
(315) Additional antibiotic antineoplastics include, but are not limited to, mitoxantrone (Novotrone®), an anthracenedione; and bleomycin antibiotics, fermentation products of Streptomyces verticillus that cleave DNA, and includes bleomycin sulfate (Blenoxane®); and mitomycin (mitomycin-C, Mutamycin®), an antibiotic isolated from Streptomyces caespitosus.
(316) 4. Biologics
(317) Generally, the term “biologics” as used herein refers to compounds that are produced by biological processes, including those utilizing recombinant DNA technology. Biologic compounds include agents or approaches that beneficially affect a patient's biological response to a neoplasm. Included are agents that act indirectly to mediate their anti-tumor effects (e.g., by enhancing the immunological response to neoplastic cells) or directly on the tumor cells (e.g., differentiating agents). Table 6 shows examples of chemotherapeutic agents that are classified as biologics.
(318) TABLE-US-00006 TABLE 6 Examples of Biologics Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Granulocyte- Filgrastim Neutropenia In vitro, G-CSF expands the population of Colony (Neupogen ®) neutrophil granulocyte precursors, augments Stimulating granulocyte function by enhancing chemotaxis Factor and antibody-dependent cellular cytotoxicity, and enhances the mobilization of stem cells in the peripheral blood following cytotoxic chemotherapy Monoclonal Bevacizumab Colorectal cancer, non- Binds to and inhibits the biologic activity of Antibody (Avastin ®) small cell lung cancer, human vascular endothelial growth factor breast cancer (“VEGF”) Granulocyte- Sargramostim Acute myelogenous Used following induction chemotherapy in Macrophage (Leukine ®) leukemia, mobilization patients with acute myelogenous leukemia Colony and engraftment of (AML) to shorten the time to neutrophil recovery Stimulating peripheral blood and to reduce the incidence of severe and life- Factor progenitor cells threatening infections; rescue bone marrow graft failure or speed graft recovery in patients undergoing autologous bone marrow transplantation HER2/neu Trastuzumab Adenocarcinomas, breast Recombinant humanized monoclonal antibody receptor (Herceptin ®) cancer directed against the human epidermal growth antagonist factor receptor 2 (HER2). After binding to HER2 on the tumor cell surface, trastuzumab induces an antibody-dependent cell-mediated cytotoxicity against tumor cells that overexpress HER2. HER2 is overexpressed by many adenocarcinomas, particularly breast adenocarcinomas Therapeutic Interferon α-2b Hairy cell leukemia, Cytokines produced by nucleated cells peptide (Intron ® A) malignant melanoma, (predominantly natural killer (NK) leukocytes) follicular lymphoma, upon exposure to live or inactivated virus, condylomata acuminata, double-stranded RNA or bacterial products. chronic hepatitis C and B These agents bind to specific cell-surface receptors, resulting in the transcription and translation of genes containing an interferon-specific response element. The proteins so produced mediate many complex effects, including antiviral effects (viral protein synthesis); antiproliferative effects (cellular growth inhibition and alteration of cellular differentiation); anticancer effects (interference with oncogene expression); and immune- modulating effects (NK cell activation, alteration of cell surface antigen expression, and augmentation of lymphocyte and macrophage cytotoxicity Therapeutic Interferon β-1b Relapsing multiple Chemically identical to or similar to endogenous peptide (Betaseron ®, sclerosis interferon beta with antiviral and anti-tumor Rebif ®) activities. Endogenous interferons beta are cytokines produced by nucleated cells (predominantly natural killer cells) upon exposure to live or inactivated virus, double-stranded RNA or bacterial products. These agents bind to specific cell-surface receptors, resulting in the transcription and translation of genes with an interferon-specific response element. The proteins so produced mediate many complex effects, including antiviral (the most important being inhibition of viral protein synthesis), antiproliferative and immune modulating effects IL-2 product Aldesleukin Metastatic renal cell Possesses the biological activities of human (Proleukin ®) carcinoma, metastatic native IL-2 melanoma Monoclonal Alemtuzumab B-cell chronic CD52-directed cytolytic antibody antibody (Campath ®) lymphocytic leukemia
(319) Examples of antineoplastic biologics include, but are not limited to, Filgrastim (Neupogen®), a recombinant granulocyte colony-stimulating factor (G-CSF); and Sargramostim (Leukine®), a recombinant granulocyte/macrophage colony-stimulating factor (GM-CSF).
(320) The term “monoclonal antibodies” (“mAb”) generally refers to identical monospecific immunoglobulin molecules derived from a laboratory procedure from a single cell clone that are capable of binding to an agonist. Fully human monoclonal antibodies have the amino acid sequence of an immunoglobulin of the human species. “Humanized” monoclonal antibodies are constructed from mouse monoclonal antibodies having the desired specificity, and often have complementarity determining regions of a mouse immunoglobulin while maintaining the framework and constant regions of a human antibody to prevent a human-antimouse neutralizing response.
(321) Examples of antineoplastic monoclonal antibodies include, but are not limited to, Bevacizumab (Avastin®), a recombinant humanized monoclonal IgG1 antibody that binds to and inhibits the biologic activity of human vascular endothelial growth factor (“VEGF”) in in vitro and in vivo assay systems, and Panitumumab (Vectibix®), a human monoclonal antibody produced in transgenic mice that attaches to the transmembrane epidermal growth factor (EGF) receptor.
(322) 5. Hormones and Related Agents
(323) Several chemotherapeutic agents exert their therapeutic effect through interactions with hormones and related agents. Table 7 shows examples of several chemotherapeutic agents classified as hormone and related agents.
(324) TABLE-US-00007 TABLE 7 Examples of Hormones and Antagonists Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Progestin Megestrol Endometrium, breast Mimicking the action of progesterone, megestrol Acetate (Megace cancer; anorexia, binds to and activates nuclear progesterone ES ®) cachexia (wasting), or receptors (PRs) in the reproductive system and other unexplained weight pituitary; ligand-receptor complexes are loss translocated to the nucleus where they bind to progesterone response elements (PREs) located on target genes. Megestrol's antineoplastic activity against estrogen -responsive tumors may be due, in part, to the suppression of pituitary gonadotropin production and the resultant decrease in ovarian estrogen secretion; interference with the estrogen receptor complex in its interaction with genes and; as part of the progesterone receptor complex, direct interaction with the genome and downregulation of specific estrogen-responsive genes. This agent may also directly kill tumor cells Antiestrogen Tamoxifen Breast cancer, especially When bound to the ER, tamoxifen induces a Citrate postmenopausal women change in the three-dimensional shape of the (Nolvadex ®) with estrogen-receptor receptor, inhibiting its binding to the estrogen- positive (ER+) metastatic responsive element (“ERE”) on DNA. Under breast cancer or following normal physiological conditions, estrogen primary tumor therapy in stimulation increases tumor cell production of an adjuvant setting; transforming growth factor β(“TGF-β”), an premenopausal women autocrine inhibitor of tumor cell growth. with ER+ tumors “Autocrine signaling” refers to a form of signaling in which a cell secretes a hormone or chemical messenger (autocrine agent) that binds to autocrine receptors on the same cell type, leading to changes in the cells. By blocking these pathways, the net effect of tamoxifen treatment is to decrease the autocrine stimulation of breast cancer growth Androgen Fluoxymesterone Breast cancer; Binds to and activates specific nuclear receptors, (Halotestin ®) testosterone replacement resulting in an increase in protein anabolism, a therapy in males with decrease in amino acid catabolism, and retention primary hypogonadism or of nitrogen, potassium, and phosphorous. This hypogonadotrophic agent also may competitively inhibit prolactin hypogonadism, as well as receptors and estrogen receptors, thereby palliation of androgen- inhibiting the growth of hormone-dependent responsive recurrent tumor lines mammary cancer in females Gonadotropin- Leuprolide Prostate cancer; Binds to and activates gonadotropin-releasing releasing (leuprolide endometriosis; anemia hormone (GnRH) receptors. Continuous, Hormone acetate, secondary to uterine prolonged administration of leuprolide in males Analog Eligard ®) leiomyomas and central results in pituitary GnRH receptor desensitization precocious puberty and inhibition of pituitary secretion of follicle stimulating hormone (FSH) and luteinizing hormone (LH), leading to a significant decline in testosterone production; in females, prolonged administration results in a decrease in estradiol production. This agent reduces testosterone production to castration levels and may inhibit androgen receptor-positive tumor progression Somatostatin Octreotide Acromegaly, severe Suppresses the luteinizing hormone response to Analog acetate diarrhea/flushing episodes gon adotropin-releasing hormone, decreases (Sandostatine associated with metastatic splanchnic blood flow, and inhibits the release of LAR Depot ®) carcinoid tumors, diarrhea serotonin, gastrin, vasoactive intestinal peptide associated with VIP-secreting tumors (VIP), secretin, motilin, pancreatic polypeptide, and thyroid stimulating hormone
5.1. Antiestrogens
(325) Antiestrogens are modulators of the estrogen receptor. Estrogens are the family of hormones that promote the development and maintenance of female sex characteristics. Examples of antiestrogens include, but are not limited to, tamoxifen citrate (Nolvadex®), a competitive inhibitor of estradiol binding to the estrogen receptor (“ER”).
(326) 5.2. Gonadotropin-Releasing Hormone Analogs
(327) Gonadotropin-releasing hormone (“GnRH”) analogs are synthetic peptide drugs modeled after human GnRH. They are designed to interact with GnRH receptor. The analogs of GnRH peptide include leuprolide (Lupron®, Eligard®), go serelin (Zoladex®), triptorelin (Trelstar Depot®) and buserelin (Suprefact®). These compounds have biphasic effects on the pituitary. Initially, they stimulate the secretion of both follicle-stimulating hormone (“FSH”) and luteinizing hormone (“LH”). However, with longer-term administration, cells become desensitized to the action of GnRH analogs. As a result, there is inhibition of the secretion of LH and FSH and the concentration of testosterone falls to castration levels in men and estrogen levels fall to postmenopausal values in women.
(328) GnRH analogs have been used to treat prostatic carcinomas. They present several side-effects, including a transient “flare” of disease. Notwithstanding, leuprolide and goserelin have been used for the treatment of metastatic breast cancer. GnRH analogs also have been used in the treatment of endometriosis, anemia secondary to uterine leiomyomas and central precocious puberty. Examples of gonadotropin-releasing hormone analogs include Leuprolide acetate, the salt of a synthetic nonapeptide analog of gonadotropin-releasing hormone.
(329) 5.3. Androgens and Antiandrogens
(330) The term “androgen” as used herein refers to any natural or synthetic compound that promotes male characteristics. Examples of antineoplastic androgens include, but are not limited to, fluoxymesterone (Halotestin®), a halogenated derivative of 17-alpha-methyltestosterone.
(331) Antiandrogens are competitive inhibitors that prevent the natural ligands of the androgen receptor from binding to the receptor. These compounds have activity of their own against prostate cancer. They also are effective in preventing the flare reaction induced by the testosterone surge that can occur with GnRH chemotherapy. The antiandrogens may be divided structurally and mechanistically into (1) steroidal and (2) nonsteroidal antiandrogens (“NSAAs”). The steroidal agents have some partial agonist activity at the androgen receptor. These include such compounds as cyproterone acetate (Androcur®) and megestrol acetate (“Megace®). Side-effects include loss of libido, decreased sexual potency, and low testosterone levels. The NSAAs inhibit the translocation of the androgen receptor to the nucleus from the cytoplasm of target cells, thus providing an antiproliferative effect. NSAAs include flutamide (Eulexin®), nilutamide (Nilandron®), and bicalutamide (Casodex®).
(332) Additional antiandrogen agents, include, but are not limited to, megestrol acetate, the salt of megestrol, a synthetic derivative of the naturally occurring female sex hormone progesterone, with progestogenic, antiestrogenic, and antineoplastic activities.
(333) 5.4. Somatostatin Analog
(334) Examples of somatostatin analogs include, but are not limited to, octreolide acetate (Sandostatin LAR® Depot), the salt of a synthetic long-acting cyclic octapeptide with pharmacologic properties mimicking those of the natural hormone somatostatin.
(335) 6. Miscellaneous Agents
(336) Imatinib mesylate (Gleevec®) inhibits the function of bcr-abl, a constituitively active tyrosine kinase. See, e.g., Kerkeld, R., et al., Nat. Med. 12: 908-16 (2006). Table 8 shows examples of other miscellaneous chemotherapeutic agents for treating neoplastic disease.
(337) TABLE-US-00008 TABLE 8 Examples of Miscellaneous Agents Useful for Treating Neoplastic Diseases Type of Agent Example Neoplasms/Disease Proposed Mechanism of Action Kinase inhibitor Sorafenib Hepatocellular carcinoma, Blocks the enzyme RAF kinase, a critical (Nexavar ®) advanced renal cell component of the RAF/MEK/ERK-β signaling carcinoma cascade, thereby blocking tumor angiogenesis Kinase inhibitor Imatinib mesylate Myeloid leukemia, Binds to an intracellular pocket located within (Gleevec ®) lymphoblastic leukemia, tyrosine kinases (TK), thereby inhibiting ATP myelodysplastic - binding and preventing phosphorylation and the myeloproliferative subsequent activation of growth receptors and diseases their downstream signal transduction pathways. This agent inhibits TK encoded by the bcr-abl oncogene as well as receptor TKs encoded by the c-kit and platelet-derived growth factor receptor (PDGFR) oncogenes Kinase inhibitor Sunitinib malate Gastrointestinal stromal (Sutent ®) tumor, advanced renal cell carcinoma HER1/EGFR Erlotinib (Tarceva ®) Non-small cell lung Competes with ATP to reversibly bind to the tyrosine kinase cancer, pancreatic cancer intracellular catalytic domain of epidermal inhibitor growth factor receptor (EGFR) tyrosine kinase, thereby reversibly inhibiting EGFR phosphorylation and blocking the signal transduction events and tumorigenic effects with EGFR activation Platinum Cisplatin Ovarian cancer, non- Forms highly reactive, charged platinum Coordination small cell lung cancer, complexes which bind to nucleophilic groups Complex and small cell lung such as GC-rich sites in DNA, inducing cancer; cancer of bladder, intrastrand and interstrand DNA crosslinks, as head and neck, and well as DNA-protein cross-links. These cross- endometrium links result in apoptosis and cell growth inhibition Platinum Carboplatin Ovarian cancer, non- When activated, intracellularly forms reactive Coordination small cell lung cancer, platinum complexes that bind to nucleophilic Complex and small cell lung cancer groups such as GC-rich sites in DNA, thereby inducing intrastrand and interstrand DNA crosslinks, as well as DNA-protein cross-links. These carboplatin-induced DNA and protein effects result in apoptosis and cell growth inhibition Platinum Oxaliplatin Advanced metastatic Alkylates macromolecules, forming both inter- Coordination (Eloxatin ®) carcinoma of colon or and intra-strand platinum-DNA crosslinks, which Complex rectum; colon cancer result in inhibition of DNA replication and transcription and cell-cycle nonspecific cytotoxicity Synthetic Glatiramer acetate Multiple sclerosis Unknown polypeptides (Copaxone ®) Platelet-reducing Anagrelide Thrombocythemia, Putatively provides dose-related reduction in Agent (Agrylin ®, polycythemia, chronic platelet production resulting from a decrease in anagrelide myelogenous leukemia, megakaryocyte hypermaturation hydrochloride) other myeloproliferative disorders including myeloid metaplasia with myelofibrosis Retinoids Isotretinoin Severe recalcitrant Binds to and activates nuclear retinoic acid (Accutane ®) nodular acne receptors (RARs); activated RARs serve as transcription factors that promote cell differentiation and apoptosis Retinoids Tretinoin Acute promyelocytic Induces maturation of acute promyelocytic (Vesanoid ®) leukemia leukemia Retinoids Bexarotene Cutaneous manifestations Selectively binds to and activates retinoid X (Targretin ®) of T-cell lymphoma receptors (RXRs), thereby inducing changes in gene expression that lead to cell differentiation, decreased cell proliferation, apoptosis of some cancer cell types, and tumor regression Sympathoimetic Methylphenidate Attention deficit Activates the brain stem arousal system and amine (Daytrana ®; hyperactivity disorder; cortex to produce its stimulant effect and, in Ritalin ®, Methylin ®, narcolepsy some clinical settings, may improve cognitive Metadate CD ®, function. Concerta ®) Sympathoimetic Dexmethylphenidate Attention deficit Activates the brain stem arousal system and amine HCl (Focalin ®) hyperactivity disorder cortex to produce its stimulant effect and, in some clinical settings, may improve cognitive function. Sympathoimetic Dextroamphetamine Attention deficit Elevates blood pressure and causes amine sulfate (Dexedrine ®) hyperactivity disorder; bronchodilation narcolepsy Synthetic analog Paricalcitol Secondary Synthetic noncalcemic, nonphosphatemic vitamin (Zemplar ®) hyperparathyroidism D analogue that binds to the vitamin D receptor associated with chronic and has been shown to reduce parathyroid kidney disease hormone (PTH) levels Class I Disopyramide Life-threatening Decreases rate of diastolic depolarization in cells antiarrhythmic phosphate ventricular arrhythmias with augmented automaticity, decreases upstroke (Norpace ®) velocity, and increases action of potential duration of normal cardiac cells ACE Trandolapril- Hypertension ACE inhibitor, calcium channel blocker inhibitor/calcium verapamil HCl channel blocker (Tarka ®) (nondihydro- pyridine) Opioid analgesic Methadone HCl Opioid analgesic; μ- Detoxifiction and temporary maintenance (Dolophine ®) agonist; also acts as an treatment of narcotic addiction; relief of severe antagonist at the N- pain methyl-D-aspartate (NMDA) receptor 5-hydroxy- Sumatriptan Migraine, cluster Selective agonist for a vascular 5- trypt amine, Succinate (Imitrex ®) headache hydroxytryptamine.sub.1 receptor subtype receptor agonist Immune Imiquimod Actinic keratosis, Stimulates cytokine production, especially response (Aldara ®) superficial basal cell interferon production, and exhibits antitumor modifying agent carcinoma, external activity, particularly against cutaneous cancers genital warts Serotonin Fluvoxamine maleate Obsessive compulsive Serotonin reuptake inhibition reuptake (Luvox ®) disorder, social anxiety inhibitor disorder Norepinephrine Atomoxetine HCl Attention deficit Unknown (noradrenaline) (Strattera ®) hyperactivity disorder reuptake inhibitor
6.1. Kinase Inhibitors
(338) Antineoplastic kinase inhibitors include, but are not limited to, Sorafenib tosylate (Nexavar®), a synthetic compound that targets growth signaling and angiogenesis, and Erlotinib hydrochloride (Tarceva®), the salt of a quinazoline derivative with antineoplastic properties.
(339) 6.2. Platinum Coordination Complexes
(340) Examples of antineoplastic agents that form platinum coordination complexes include, but are not limited to, Cisplatin (cis-diamminedichloroplatinum (II), Platinol-AQ®), a divalent inorganic water-soluble, platinum containing complex that appears to enter cells by diffusion and reacts with nucleic acids and proteins, is a component of several combination chemotherapy regimens. For example, it is used with bleomycin, etoposide and vinblastine for treating patients with advanced testicular cancer, and with paclitaxel, cyclophosphamide or doxorubicin for treating ovarian cancer.
(341) Another antineoplastic agent that forms a platinum coordination complex is Carboplatin (CBDCA, JM-8), which has a mechanism and spectrum of clinical activity similar to cisplatin, but generally is less reactive than cisplatin.
(342) An additional antineoplastic agent is Oxaliplatin (trans-1-diaminocyclohexane oxalatoplatinum), which, like cisplatin, has a wide range of antitumor activity and is active in ovarian cancer, germ-cell cancer and cervical cancer. Unlike cisplatin, oxaliplatin in combination with 5-fluorouracil is active in colorectal cancer.
(343) 6.3. EDTA Derivatives
(344) Other antineoplastic agents include EDTA-derivatives. Such compounds include, but are not limited to, Dexrazoxane hydrochloride (Zincard®), the salt of a bisdioxopiperazine with iron-chelating, chemoprotective, cardioprotective, and antineoplastic activities.
(345) 6.4. Platelet-Reducing Agent
(346) Anagrelide hydrochloride (Agrlyin®) is a platelet-reducing agent used to treat thrombocythemia, secondary to myeloproliferative disorders, to reduce the elevated platelet count and the risk of thrombosis and to ameliorate associated symptoms including thrombo-hemorrhagic events.
(347) 6.5. Retinoids
(348) Retinoids are a group of substances related to vitamin A and function like vitamin A in the body. Retinoids include, but are not limited to, bexarotene (Targretin®), a synthetic retinoic acid agent with potential antineoplastic, chemopreventive, teratogenic and embryotoxic properties; and isotretinoin (Accutane®), a naturally-occurring retinoic acid with potential antineoplastic activity.
(349) 6.6. Histone Deacetylase Inhibitors
(350) The histone deacetylase inhibitor vorinostat (Zolinza®) is a synthetic hydroxamic acid derivative with antineoplastic activity, and a second generation polar-planar compound that binds to the catalytic domain of the histone deacetylases (HDACs). This allows the hydroxamic moiety to chelate zinc ion located in the catalytic pockets of the HDAC, thereby inhibiting deacetylation and leading to an accumulation of both hyperacetylated histones and transcription factors. Hyperacetylation of histone proteins results in the upregulation of the cyclin-dependant kinase p21, followed by G.sub.1 arrest. Hyperacetylation of non-histone proteins such as tumor suppressor p53, alpha tubulin, and heat-shock protein 90 produces additional anti-proliferative effects. Vorinostat also induces apoptosis and sensitizes tumor cells to cell death processes.
(351) 7. Chemotherapeutic Drugs Useful for Treating Multiple Myeloma (MM)
(352) 7.1 Immunomodulatory Drugs
(353) Immunomodulatory drugs effective in treating MM include, but are not limited to, Thalidomide, and its synthesized analogs Lenalidomide and Pomalidomide. Thalidomide and Lenalidomide are oral agents shown to be effective across the spectrum of myeloma disease (Rajkumar S V, Mayo Clin Proc. 2004; 79: 899-903; Kyle R A et al., Blood. 2008; 111: 2962-2972). The mechanism of action of both Thalidomide and Lenalidomide in MM is not fully understood. Proposed mechanism(s) include the inhibition of tumor necrosis factor-alpha (TNF alpha), prevention of free-radical-mediated DNA damage, suppression of angiogenesis, increase in cell-mediated cytotoxic effects, and alteration of the expression of cellular adhesion molecules, inhibition of the activity of nuclear factor kappa B (NF-kappa B) and the enzymes cyclooxygenase-1 and cyclooxygenase-2, and promotion of the cytotoxic activity of natural killer and T cells by stimulating their proliferation and secretion of interleukin 2 and interferon gamma. Evaluation of immune function in MM patients treated with Pomalidomide demonstrated a poly-functional T-cell activation and a reduction of transcription factors on and enhanced function of innate lymphoid cells (Sehgal K, et al. Blood (2015) 125:4042-51; Kini Bailur J, et al. Blood Adv. 2017 Nov. 28; 1(25):2343-2347).
(354) 7.2 Proteasome Inhibitors
(355) Proteasome inhibitors effective in treating MM include, but are not limited to, Bortezomib. Bortezomib, a first-in-class proteasome inhibitor, targets the 26S proteasome, a multicatalytic proteinase complex involved in intracellular protein degradation. Bortezomib inhibits transcription factor NF-kappaB activation by protecting its inhibitor I kappa B (IkappaB) from degradation by the 26S proteasome. Degradation of I kappa B by proteasome activates NF-kappaB, which up-regulates transcription of proteins that promote cell survival and growth, decreases apoptosis susceptibility, influences the expression of adhesion molecules, and induces drug resistance in myeloma cells (Merchionne F et al., Clin Exp Med. 2007; 7: 83-97). Bortezomib not only targets the myeloma cell, but also acts in the bone marrow microenvironment by inhibiting the binding of myeloma cells to bone marrow stromal cells and bone marrow-triggered angiogenesis.
(356) 7.3 Bisphosphonates
(357) Bisphosphonates effective in treating MM include, but are not limited to, Pamidronate and zoledronic acid. Bisphosphonates inhibit the dissolution of the hydroxyapatite crystals and down-regulate osteoclast function (Schwartz R N et al., JMCP, September 2008, Vol. 14, No. 7, pp. S12-S18). Certain bisphosphonates (the more potent nitrogen-containing compounds) also appear to have antitumor activity and have been shown to reduce production of the growth factor interleukin 6 (IL-6), which plays a role in the growth and survival of myeloma cells (Schwartz R N et al., JMCP, September 2008, Vol. 14, No. 7, pp. S12-S18). Pamidronate also stimulates an immune response against MM that is mediated by T cells (Schwartz R N et al., JMCP, September 2008, Vol. 14, No. 7, pp. S12-S18). Pamidronate and zoledronic acid have been shown to induce apoptosis (programmed cell death) in the laboratory (Multiple Myeloma Research Foundation. Bisphosphonate overview, www.multiplemyeloma.org/treatment/3.06.php).
(358) 7.4 Immunomodulators/Checkpoint Inhibitors
(359) Checkpoint inhibitors target molecules on immune cells to create new or enhanced immune responses against cancer. Cytokines regulate immune cell maturation, growth, and responsiveness. Adjuvants can stimulate pathways to provide longer protection or produce more antibodies. Immunomodulator targets under evaluation in multiple myeloma clinical trials include: CTLA-4: blocking this pathway can help promote expansion and diversification of cancer-fighting T cells; IL-2/IL-2R: activating this cytokine pathway can help promote the growth and expansion of cancer-fighting T cells; PD-1/PD-L1: blocking this pathway can help prevent cancer-fighting T cells from becoming “exhausted,” and can restore the activity of already-exhausted T cells; Toll-like receptors (TLRs): activation of these innate immune receptors can help stimulate vaccine-like responses against tumors. (https://www.cancerresearch.org/immunotherapy/cancer-types/multiple-myeloma)
7.5 Cancer Vaccines
(360) Cancer vaccines are designed to elicit an immune response against tumor-specific or tumor-associated antigens, encouraging the immune system to attack cancer cells bearing these antigens. Cancer vaccines can be made from a variety of components, including cells, proteins, DNA, viruses, bacteria, and small molecules. Cancer vaccine targets under evaluation in multiple myeloma clinical trials include: Melanoma-associated antigen (MAGE): the genes that produce these proteins are normally turned off in adult cells, but can become reactivated in cancer cells, flagging them as abnormal to the immune system; Survivin: a protein that can prevent cellular death and is overexpressed by a number of cancer cell types; Telomerase: an enzyme that helps maintain the health of cellular DNA; exploited by cancer cells to achieve immortality; Tumor-associated antigens (TAAs): proteins often expressed at abnormally high levels on tumor cells that can be used to target them; also found on normal cells at lower levels; WT1: a protein that is often mutated and abnormally expressed in patients with cancer, especially Wilms' tumor (WT). (Id.).
7.6 Adoptive Cell Therapy
(361) Adoptive cell therapy takes a patient's own immune cells, expands or otherwise modifies them, and then reintroduces them to the patient, where they can seek out and eliminate cancer cells. In CAR T cell therapy, T cells are modified and equipped with chimeric antigen receptors (CARs) that enable superior anti-cancer activity. Natural killer cells (NKs) and tumor infiltrating lymphocytes (TILs) can also be enhanced and reinfused in patients. Cell-based immunotherapy targets under evaluation in multiple myeloma clinical trials include: BCMA: an important signaling receptor found mainly on mature B cells; often expressed by lymphoma and myeloma cells; CD19: a receptor found on the surface of almost all B cells that influences their growth, development, and activity; often expressed by leukemia, lymphoma, and myeloma cells; CD20: a receptor found on the surface of B cells during their development; often expressed by leukemia, lymphoma, and myeloma cells; NY-ESO-1: a protein that is normally produced only before birth, but is often abnormally expressed in cancer; WT1: a protein that is often mutated and abnormally expressed in patients with cancer, especially Wilms' tumor (WT). (Id.).
7.7 Oncolytic Virus Therapy
(362) Oncolytic virus therapy uses modified viruses that can infect tumor cells and cause them to self-destruct. This can attract the attention of immune cells to eliminate the main tumor and potentially other tumors throughout the body. Viral platforms under evaluation in multiple myeloma clinical trials include: Measles virus: a highly contagious virus that infects the respiratory tract and can cause measles; Reovirus: a family of viruses that can affect the gastrointestinal and respiratory tracts in a range of animal species; Vesicular stomatitis virus: a virus that belongs to the same family as the rabies virus; can cause flu-like symptoms in humans. (Id.).
7.8 Targeted Antibodies
(363) Targeted antibodies are proteins produced by the immune system that can be customized to target specific markers on cancer cells in order to disrupt cancerous activity, especially unrestrained growth. Antibody-drug conjugates (ADCs) are equipped with anti-cancer drugs that they can deliver to tumors. Bi-specific T cell-engaging antibodies (BiTEs) bind both cancer cells and T cells in order to help the immune system respond more quickly and effectively. There are currently two FDA-approved targeted antibody immunotherapy options for multiple myeloma: Daratumumab (Darzalex®): a monoclonal antibody that targets the CD38 pathway; approved for subsets of patients with advanced multiple myeloma; Elotuzumab (Empliciti®): a monoclonal antibody that targets the SLAMF7 pathway; approved for subsets of patients with advanced multiple myeloma. (Id.).
(364) Antibody targets under evaluation in multiple myeloma clinical trials include: BCMA: an important signaling receptor found mainly on mature B cells; often expressed by lymphoma and myeloma cells; CD19: a receptor found on the surface of almost all B immune cells that influences their growth, development, and activity; often expressed by leukemia, lymphoma, and myeloma cells; CD20: a receptor found on the surface of B immune cells during their development; often expressed by leukemia, lymphoma, and myeloma cells; CD38: an immune cell surface protein that plays roles in cell adhesion and signaling; often expressed by leukemia and myeloma cells; CD52: a protein found on the surface of mature immune cells as well as other cell types; EGFR: a pathway that controls cell growth and is often mutated in cancer; HER2: a pathway that controls cell growth and is commonly overexpressed in cancer and associated with metastasis; SLAMF7: a surface protein found on plasma B cells; often expressed by lymphoma and myeloma cells. (Id.).
(365) According to some embodiments, the chemotherapeutic agent is selected from the group consisting of an alkylating agent, an antimetabolite, a natural product, a hormone, a biologic, a kinase inhibitor, a platinum coordination complex, an EDTA derivative, a platelet-reducing agent, a retinoid and a histone deacetylase inhibitor. According to some embodiments, the chemotherapeutic agent is selected from the group consisting of an immunomodulatory drug, a proteasome inhibitor, a bisphosphonate, an immunomodulator or checkpoint inhibitor, a cancer vaccine, an adoptive cell therapy, an oncolytic virus therapy, or a targeted antibody. According to some embodiments, the immunomodulatory drug is Thalidomide, Lenalidomide, or Pomalidomide. According to some embodiments, the proteasome inhibitor is Bortezomib. According to some embodiments, the bisphosphonate is Pamidronate or zoledronic acid. According to some embodiments, the immunomodulator or checkpoint inhibitor is a CTLA-4 inhibitor, a IL-2/IL-2R activator, a PD-1/PD-L1 inhibitor, or a TLR activator. According to some embodiments, the cancer vaccine is effective to elicit an immune response to a target selected from a melanoma-associated antigen (MAGE), survivin, telomerase, a tumor-associated antigen (TAA), and WT1. According to some embodiments, the adoptive cell therapy is a CAR T cell therapy, a natural killer cell (NK) therapy, or a tumor infiltrating lymphocytes (TIL) therapy. According to some embodiments, the adoptive cell therapy is effective to target BCMA, CD19, CD20, NY-ESO-1, or WT1. According to some embodiments, the oncolytic virus therapy uses a measles virus, a reovirus, or a vesicular stomatitis virus. According to some embodiments, the targeted antibody is daratumumab or elotuzumab. According to some embodiments, the targeted antibody is an antibody to BCMA, CD19, CD20, CD38, CD52, EGFR, HER2, or SLAMF7.
(366) According to some embodiments, the MM niche further comprises osteoblast-secreted and MM cell-secreted soluble cytokines and growth factors. According to some embodiments, the MM cells are adherent to osteoblasts of the BM niche. According to some embodiments, the MM cells adhere to the osteoblasts of the BM niche by cell-cell interactions. According to some embodiments, the human myeloma cells are cellular components of a bone marrow aspirate. According to some embodiments, the human myeloma cells are cellular components of peripheral blood. According to some embodiments, the human myeloma cells are cellular components of a core biopsy.
(367) According to some embodiments, the period of time for dynamic propagation of the human myeloma cells in the ex vivo dynamic MM cancer niche is at least 4 days. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes 1×10.sup.4 to 1×10.sup.5 mononuclear cells. According to some embodiments, the sample of human myeloma cells added to the BM niche constitutes about 1×10.sup.4 mononuclear cells, about 2×10.sup.4 mononuclear cells, about 3×10.sup.4 mononuclear cells, about 4×10.sup.4 mononuclear cells, about 5×10.sup.4 mononuclear cells, about 6×10.sup.4 mononuclear cells, about 7×10.sup.4 mononuclear cells, about 8×10.sup.4 mononuclear cells, about 9×10.sup.4 mononuclear cells, about or about 1×10.sup.5 mononuclear cells. According to some embodiments, propagation of the MM cells in the ex vivo MM cancer niche under conditions that mimic interstitial flow; shear stresses exerted by the interstitial flow on the cells; increased blood flow associated with tumor cell expansion, or a combination thereof is effective to produce deterioration of the 3D ossified tissue of the BM niche. According to some embodiments, the method further comprises cultivating the human myeloma cells in the MM cancer niche to propagate the MM cells for a period of time. According to some embodiments, the MM cancer niche is effective to maintain viability and proliferative capacity of the MM cells for at least 3 weeks. According to some embodiments, the method further comprises testing chemotherapeutic efficacy of a chemotherapeutic agent on the viable human MM cells maintained in the ex vivo MM cancer niche of (c)(3) in the test chamber of (a) by contacting the ex vivo MM cancer niche comprising viable human myeloma cells with a test chemotherapeutic agent under conditions that mimic interstitial flow; shear stresses exerted by the interstitial flow on the cells; increased blood flow associated with tumor cell expansion, or a combination thereof.
(368) Where a range of values is provided, it is understood that each intervening value, to the tenth of the unit of the lower limit unless the context clearly dictates otherwise, between the upper and lower limit of that range and any other stated or intervening value in that stated range is encompassed within the invention. The upper and lower limits of these smaller ranges which may independently be included in the smaller ranges is also encompassed within the invention, subject to any specifically excluded limit in the stated range. Where the stated range includes one or both of the limits, ranges excluding either both of those included limits are also included in the invention.
(369) Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although any methods and materials similar or equivalent to those described herein can also be used in the practice or testing of the present invention, the preferred methods and materials are now described. All publications mentioned herein are incorporated herein by reference to disclose and described the methods and/or materials in connection with which the publications are cited.
(370) It must be noted that as used herein and in the appended claims, the singular forms “a”, “and”, and “the” include plural references unless the context clearly dictates otherwise. All technical and scientific terms used herein have the same meaning.
(371) The publications discussed herein are provided solely for their disclosure prior to the filing date of the present application and each is incorporated by reference in its entirety. Nothing herein is to be construed as an admission that the present invention is not entitled to antedate such publication by virtue of prior invention. Further, the dates of publication provided may be different from the actual publication dates which may need to be independently confirmed.
EXAMPLES
(372) The following examples are put forth so as to provide those of ordinary skill in the art with a complete disclosure and description of how to make and use the present invention, and are not intended to limit the scope of what the inventors regard as their invention nor are they intended to represent that the experiments below are all or the only experiments performed. Efforts have been made to ensure accuracy with respect to numbers used (e.g. amounts, temperature, etc.) but some experimental errors and deviations should be accounted for. Unless indicated otherwise, parts are parts by weight, molecular weight is weight average molecular weight, temperature is in degrees Centigrade, and pressure is at or near atmospheric.
Example 1. Device Design and Features
(373) A 96-well plate-based perfusion device was developed that can be used to maintain the viability and proliferative capacity of PMMC over 3 weeks..sup.15 We found that: (1) the adhesion of PMMC to osteoblasts (OSB) and the long-term viability of OSB are critical factors for the ex vivo survival of PMMC and (2) perfusion flow rate can be optimized to increase the long-term viability of PMMC..sup.15-17 While these findings support the culture platform's capability to recapitulate critical environmental factors associated with the survival of patient tumor cells, the high-throughput operation of this dynamic culture platform has been limited since the use of external pumps and tubing connections is labor-intensive and error-prone to cause bubble formation and fluid leakage..sup.18-20
(374) We completely redesigned our culture platform to facilitate its high-throughput use by implementing a gravity-driven, pumpless flow control strategy (
(375) As shown in
(376)
(377) In order to control the medium flow rate (Q) through the culture chamber,.sup.26 a 0.4 μm pore size polycarbonate (PCTE) membrane is imbedded, as a flow rate controller, in the inlet well (outlined in blue). Since the flow is laminar (meaning a steady, continuous stream of fluid, in which the fluid travels smoothly or in regular paths), the Hagen-Poiseuille equation can be used to calculate Q that is generated by ΔP:
(378)
where ΔP is the pressure drop between the medium reservoirs, μ is the dynamic viscosity of the medium (0.7 mPa.Math.s under the incubator condition), ε is the porosity of the membrane (10% for the 0.4 μm PCTE membrane), A.sub.m is the surface area of the membrane (1.77 mm.sup.2), L.sub.m is the thickness of the membrane (10 μm), and d.sub.m is the average pore diameter (meaning the pore width or distance between two walls of a pore) of the membrane (0.4 μm). For example, Q of 0.5 μL/min can be generated in the culture chamber if ΔP is 67 Pa. The corresponding wall shear stress (c) at the bottom surface of the culture chamber is calculated to be 0.4 mPa using:
(379)
where h.sub.c is the height of the culture chamber (0.137 mm) and w.sub.c is the chamber width (5.35 mm).
(380) Computational simulation results, summarized in
(381)
Δh=Δh.sub.0e.sup.−2Q.sup.
Q=Q.sub.0e.sup.−2Q.sup.
where Δh.sub.0 is the initial medium level difference, A is the cross-sectional area of a 96-well, Q.sub.0 is the initial flow rate (0.5 μL/min). Note that the residence time of the medium in the culture chamber, based on Q.sub.0, is ˜17 min.
(382) In order to maintain Q within 10%, the tilting angle of the rocking device is increased from 14.4 to 15.5 degree after 20 minutes into culture (
(383)
(384)
Example 2. Device Fabrication
(385) As shown in
(386) As shown in
(387) Because of the large and rigid glass plate used for the device bottom, we found it difficult to seal the well plate only with the PSA layers. Introducing the PDMS layer (
Example 3. Flow Visualization
(388) As shown in
Example 4. Cell Culture
(389) MM.1S (MM cell line, ATCC®CRL-2974) and hFOB 1.19 (human OSB cell line, ATCC® CRL-11372) were purchased from ATCC. MM.1S cells were cultured in high glucose RPMI-1640 medium supplemented with 15% fetal bovine serum (FBS), 2.5 mM of L-glutamine and 1% penicillin/streptomycin. hFOB 1.19 cell medium consisted of a 1:1 mixture of Ham's F12 Medium Dulbecco's Modified Eagle's Medium, with 2.5 mM L-glutamine, 10% FBS and 0.3 mg/ml G418 (Sigma-Aldrich). hFOB 1.19 and MM.1S cells were maintained and propagated in a 5% CO.sub.2 incubator at 34° C. and 37° C. respectively. Co-culture experiments were conducted at 37° C. a 1:1 mixture of MM.1S and hFOB 1.19 growth media was used for co-culture. All cell lines were periodically checked for Mycoplasma using MycoAlert™ Mycoplasma Detection Kit (Lonza). Authentication of cell lines was performed by STR DNA profiling analysis conducted by the Molecular Resources Facility at Rutgers University. Cell populations were frozen after 3 passages from the time of initial receipt and growth and were discarded after 20 passages.
(390) Dynamic Culture of OSB Cells
(391) We used the human OSB cell line hFOB 1.19 to validate that the pumpless culture device: (1) supports long-term OSB culture; and (2) can generate flow-induced shear stress that promotes osteoblastic development. Studies.sup.28 have shown that flow-induced shear stress could stimulate OSB proliferation and activity. We have also established the importance of perfusion in maintaining the long term viability of OSB and PMMC..sup.16
(392) Before introducing OSB cells, the culture chamber was sterilized with 70% isopropyl alcohol for 30 minutes, and functionalized with fibronectin (Corning™ Fibronectin, Human). Briefly, 20 μL fibronectin solution (150 μg/ml, which equals to 2 μg/cm) was pipetted into the chamber from cell seeding port to fill up the chamber. Then 5 μL solution was also added onto each port to prevent evaporation during coating. The device was left at 37° C. for 1 h, then washed with PBS and OSB growth medium. 10 μL OSB suspension with a cell density of 2 million/mL was introduced through the cell seeding port (1×10.sup.4 cells/chamber), static culture for 4 h to let the OSBs adhere. We observed that there were just a few cells occasionally settled in and attached to the channel between the seeding port and culture chamber. We attributed this behavior to the higher shear stress in the channel than in the culture chamber (4 mPa vs. 0.4 mPa). Then, 100 μL medium was added to both reservoirs, and the device was placed on a rocking platform in a 34° C. incubator to start the dynamic culture. Medium was changed every two days.
(393) The rocking platform was assembled using a commercial rotator (R4040, Benchmark Scientific) and by connecting its stepper motor to a microcontroller (Arduino Uno) and a driver (A4988) on a computer numerical control (CNC) shield. The tilting angle was set to 14.4 degrees initially to generate a 6.7 mm medium level difference between the inlet and outlet wells. According to the tilting control strategy in
(394) Cell viability and alkaline phosphatase (ALP, a measurement of osteoblastic activity) were determined after 4-day dynamic culture of OSB. Fluorescent images are shown in
(395) Cell nuclei were stained with 5 μg/ml Hoechst (Hoechst 33324). LIVE/DEAD Viability/Cytotoxicity Kit (0.1 μM calcein AM & 0.1 μM EthD-1; Thermo Fisher Scientific) was used to visualize live and dead cells. Fluorescence images were captured using an inverted microscope (Nikon Ti-E) and analyzed using ImageJ 1.49v. OSB were significantly more viable after 4 days of dynamic culture (93.29%±0.68%) than under static culture conditions (86.76%±2.93%) [*P<0.05,
(396) For ALP activity, we used TRACP&ALP assay kit (TaKaRa #MK301). It detects ALP through the use of pNPP (p-nitro-phenyl phosphatase) and it is quantified by measuring the absorbance of the reactant at 405 nm.
Example 5. Chemosensitivity Evaluation of MM Cells Through In Situ Staining and HCS
(397) The high-throughput capability of the pumpless culture platform was evaluated by studying the response of MM.1S cells to bortezomib at four different concentrations (0 nM, 5 nM, 10 nM, 20 nM). Bortezomib is a proteasome inhibitor that induces MM cell apoptosis..sup.29 Before introducing MM.1S cells, OSB were dynamically cultured for 4 days (in a CO.sub.2 incubator at 34° C.). MM.1S cells were pre-labeled with 5 μM cell trace violet (Thermo Fisher Scientific), 10 μL MM.1S with a cell density of 4 million/ml were seeded into culture chambers (2×10.sup.4 cells/chamber). The device was then placed inside a CO.sub.2 incubator at 37° C. for 4 h to let MM.1S settle prior to starting the flow. Cells were co-cultured for another 24 h, and then treated with bortezomib for 4 h. After drug treatment, the medium was changed and cultures were allowed to recover for a 24 h period before analyses were conducted. MM.1S alone, cultured in the device but under static conditions were used as control.
(398) Cell viability after treatment and recovery was determine as described above, using LIVE/DEAD Viability/Cytotoxicity Kit (0.1 μM calcein AM & 0.1 μM EthD-1). Culture chambers were scanned using HCS (CellInsight™ CX5, Thermo Fisher Scientific). Cell trace violet.sup.+ calcein AM.sup.+ cells were identified as live MM.1S and cell trace violet.sup.+ EthD-1.sup.+ cells were identified as dead cells, using pre-design CX5 software algorithms (HCS Studio 2.0 Cell Analysis Software) for cell quantification and rapid analysis.
(399) Fluorescent images captured by HCS are shown in
(400) Furthermore, images of MM cells alone show an even distribution of cells throughout the well, indicating that nearly no flow disturbance was generated during cell washing and staining. Of note, bubbles in the culture chamber could be removed automatically through the membrane within a minute. Bubbles in the channels could be also easily pipetted into the culture chamber or directly pipette out with a hard force.
(401) Data quantification was performed automatically using the HCS Studio Software. The percentage of live (cell trace violet.sup.+ calcein AM.sup.+ cells/cell trace violet.sup.+ cells) and dead (cell trace violet.sup.+EthD-1.sup.+/cell trace violet.sup.+ cells) MM.1S cells were plotted against bortezomib concentration. MM.1S in co-culture (
(402) Statistics
(403) Statistical analyses were conducted using GraphPad Prism V.7.0. Differences between two groups were calculated using Student's t-test. One way ANOVA followed by Tukey's multiple comparison analysis was conducted to compare multiple groups. A P<0.05 was considered significant.
(404) Discussion
(405) The gravity-driven flow strategy has been previously used to develop pumpless microfluidic culture devices. In comparison to other such systems,.sup.19,30-32 our design enables: (1) the control and maintenance of medium flow within 10% of the set rate (
(406) Also, we used a transparent porous membrane at the top of the cell culture chamber to facilitate high-throughput in situ cell staining and imaging (
(407) The high-throughput capacity of the pumpless culture platform was demonstrated in this study through the evaluation of MM.1S cells' drug response using HCS in three different aspects: (1) 20 culture chambers in a single well plate, (2) dynamic culture without the setting up difficulties and time required to use tubing and pumps, and (3) in situ staining and HCS. In regard to the use of in situ staining and HSC, entire end-point viability characterization procedures on 20 chambers took less than 1 h. In comparison, conventional characterization based on flow cytometry typically consume over several hours to harvest, stain, and analyze cells.
(408) Our culture platform has also been optimized for: (1) device fabrication based on rapid prototyping using digital cutter, the whole fabrication process takes only 2 hours and (2) device sealing by incorporating a PDMS layer. We developed a method to firmly adhere the PDMS to PSA double-sided tape, which also provides a convenient method to indirectly adhere PDMS to polystyrene surface. We observed that the PSA layers did not cause leaking and bubble problems and adversely affect cell viability during culture. These observations are consistent with results from other microfluidic devices fabricated using PSA..sup.26,36 In the current device design, PDMS is used to fabricate the microfluidic device and is in direct contact with cell culture medium. It has been reported that PDMS could leach hydrophobic components from cell culture media and store them within the bulk structure of PDMS..sup.37 To eliminate PDMS, we will need to find a better material to replace the rigid glass bottom, e.g., tissue culture-treated polystyrene plate, in order to seal the culture chamber. Inlet, outlet and cell seeding ports could also be drilled from a polystyrene plate. Furthermore, for high-throughput commercial manufacturing, injection molding could be applied to fabricate device parts, thermal bonding, solvent bonding or adhesive bonding could then be used for assembly.
(409) The pumpless culture platform stimulated osteoblastic differentiation and enabled the formation of a distinct cellular morphology due to the dynamic culture. This flow-induced shear stress is essential for the long term maintenance of OSB and PMMC.sup.16 and is lacking in other comparable in vitro models of MM..sup.5-7,9,10,14 Importantly, we demonstrated the compatibility of the system with high-throughput staining and HCS screening for drug evaluation purposes of a complex multicellular environment containing OSB and MM cells. In future studies, we will use the device to prospectively correlate the ex vivo response of PMMC to drugs and short-term clinical outcomes.
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