METHODS FOR USING MASS SPECTROSCOPY IN MULTIPLEX TARGET EVALUATIONS
20220252611 · 2022-08-11
Assignee
Inventors
- Manilduth RAMNATH (Celle-L'Evescault, FR)
- Benoît FOUCHAQ (Poitiers, FR)
- Jérôme LAPARRE (Celle-L'Evescault, FR)
Cpc classification
G01N2500/04
PHYSICS
G01N33/94
PHYSICS
G01N33/537
PHYSICS
G01N33/6845
PHYSICS
International classification
Abstract
Provided are multiplexed methods for characterizing binding of a test compound to different receptor target molecules using mass spectroscopy techniques. The methods employ receptor molecules that have different functions or found in different tissues, such as cerebral cortex, cerebellum, ventricular and hepatic membrane preparations. The methods enable determination of undesirable off-target binding of a test compound. The methods comprise incubation of a heterologous mixture of different receptor target molecules with ligands (known binders), and a test compound. Various wells contain different amounts of molecules for use in construction of concentration curves. Next, unbound ligands are separated from the well contents. Next, ligands that were bound to the receptors are separated. An LC/ESI-MS/MS method may be used to reduce irrelevant mass spectroscopy peaks. Binding of the test compound to a desired receptor target molecule is compared to binding of the test compound to other receptor target molecules, i.e., off-target binding.
Claims
1. A multiplexed method for quantitating binding of a test compound to a predetermined target molecule and also to binding to off-target target molecules, comprising the steps of: (a) obtaining a mixture of target molecules from at least one of (i) healthy or non-healthy human or non-human tissue, and (ii) a synthetic protein preparation; (b) incubating said target molecules in a plurality of mixtures of ligands and test compounds, wherein said target molecules and are incubated with different ligands; (c) removing unbound ligands from said plurality of mixtures; (d) isolating ligands that were bound to target molecules in said mixture of target molecules; (e) determining a quantity of ligand that was bound by a target molecule, by measuring ligands that were obtained in step (d), using mass spectrometry and a calibration curve; (f) determining an affinity of the test compound for target molecules in said mixture of target molecules using data obtained in step (e); and (g) measuring binding of said test compound to a predetermined target molecule and comparing said binding to binding of said test compound to off-target molecules.
2. The method of claim 1, wherein said mixture of target molecules further comprises a heterologous mixture of target molecules.
3. The method of claim 1, wherein said mixture of target molecules comprises targets that are human target molecules.
4. (canceled)
5. The method of claim 1, wherein step (a) comprises obtaining target molecule from a crude extract.
6. (canceled)
7. (canceled)
8. The method of claim 1, further comprising the step of determining a K.sub.on and K.sub.off of the test compound to a target molecule.
9. The method of claim 8, wherein K.sub.off is determined by a displacement method.
10. The method of claim 8, wherein K.sub.off is determined by a dilution method.
11. The method of claim 1, wherein said target molecules are formed in a mixture of receptor target molecules that does not exist in nature in a single mixture.
12. (canceled)
13. (canceled)
14. A multiplexed method for quantitating binding affinity of at least two different test compounds (test compound C1-C.sub.n) to at least two different receptor target molecules (receptor RT1 for C1, RT.sub.n for C.sub.n), based on competitive binding between the test compounds and known binders for RT1 and RT2 (known binder B1-B.sub.n), comprising: (a) providing a mixture comprising (i) test compounds C1-C.sub.n; (ii) known binders B1-B.sub.n and (iii) receptor target molecules RT1-RT.sub.n; (b) allowing complexes to form in said mixture between the test compounds C1-C.sub.n, RT1-RT.sub.n, and B1-B.sub.n, (c) separating compounds which do not form complexes with their target molecules from said complexes; (d) isolating known binders from complexes obtained in step (c) and passing isolated binders through a mass spectrometer to measure binding of test compounds using mass spectroscopy; and (e) determining the relative affinities of compounds C1-C.sub.n for RT1-RT.sub.n, respectively, wherein C.sub.n, B.sub.n, and RT.sub.n represent a series of members wherein n is between 2 and 40.
15. The method of claim 14, wherein the receptor target molecules RT1-RT.sub.n are in a mixture not found in nature in the same tissue.
16. The method of claim 14, wherein step (a) comprises obtaining receptor target molecules from a crude extract and said receptor target molecules are obtained from ex vivo membranes of at least two of cortex, cerebellum, ventricular and hepatic membrane preparations.
17. The method of claim 14, wherein said step of providing receptor target molecules RT1-RT.sub.n comprises providing human receptor target molecules.
18. (canceled)
19. (canceled)
20. (canceled)
21. The method of claim 14, further comprising the step of determining a K.sub.on and K.sub.off of the test compound to the target molecule.
22. A multiplexed method for quantitating binding affinity of a test compound to a target molecule, comprising the steps of: (a) obtaining at least three target molecules as set forth in the chart below TABLE-US-00016 Target molecule Adenosine receptor A1 Muscarinic acetylcholine receptor 5-HT2A (serotonin) Alpha-1A adrenergic receptor Alpha-.sub.2A adrenergic receptor Dopamine receptor D1 5HT transporter 5HT1a receptor 5HT2a receptor Cave Ca channel PCP receptor Opioid receptor (b) incubating said target molecules in a plurality of mixture of ligands and test molecules, (c) removing unbound ligands from the mixtures; (d) isolating ligands that were bound to the target molecules after incubating; (e) determining the quantity of each ligand that was present on the target molecules by measuring ligands that were obtained in step (d) by mass spectrometry, using a calibration curve prepared with known concentrations of ligand; and (f) calculating an affinity of the test compound for the target molecule from the data obtained in step (e).
23. The method of claim 22, wherein the same test compound is used with each target molecule.
24. The method of claim 22, comprising the use of the following target molecules and ligands: TABLE-US-00017 Target molecule Ligand Adenosine receptor A1 CPX Muscarinic pyrenzepine acetylcholine receptor 5-HT.sub.2A (serotonin) EMD281014 Alpha-1A adrenergic prazosine receptor Alpha-2A adrenergic RX82102 receptor Dopamine receptor D1 SCH23390 5HT transporter paroxetine 5HT1a receptor 8-OH-DPAT 5HT2a receptor EMD281014 Cave Ca channel D600 PCP receptor MK801 Opioid receptor naloxone
25. A multiplexed method for determining K.sub.on and/or K.sub.off values of a of a test compound to a target molecule, comprising the steps of: (a) obtaining a mixture of target molecules from at least one of (i) healthy or non-healthy human or non-human tissue, and (ii) a synthetic protein preparation; (b) incubating said target molecules in a plurality of mixtures of ligands and test compounds, wherein said target molecules bind to different ligands and are incubated with different target molecules; (c) removing unbound ligands from the mixtures; (d) isolating bound ligands that were bound to the target molecules; (e) determining a quantity of ligand that was bound by a target molecule, by measuring ligands that were obtained in step (d) at defined time points in a reaction mixture, using mass spectrometry and a calibration curve; and (f) calculating K.sub.on or K.sub.off of the test compound for the target molecule using data obtained in step (e).
26. The method of claim 25, wherein K.sub.on and K.sub.off are determined in mixtures of different ex vivo membranes comprised of at least two of: cortex, cerebellum, ventricular and hepatic membrane preparations.
27. The method of claim 25, wherein membrane mixtures comprise at least two of receptor A1, A2A (h), A3 (h), M1, M2 (h), Alpha1ns, Alpha2ns, D1, D2S (h), 5HT1a, 5HT2a, 5HTtrans, Cave, PCP, Opioid ns, AT2 (h), B2 (h), CB1 (h), CCK1 (CCKA), H4 (h), and CysLT1 (LTD4) (h).
28. The method of claim 27, wherein the membrane mixtures comprise all of the listed receptors.
29. The method of claim 25, wherein K.sub.off is determined by a displacement method.
30. The method of claim 25, wherein K.sub.off is determined by a dilution method.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0038] Example embodiments are illustrated by way of example and no limitation in the tables and in the accompanying figures, like references indicate similar elements and in which:
[0039]
[0040]
[0041]
[0042]
[0043]
[0044]
DETAILED DESCRIPTION
Overview
[0045] Described here is a method of measuring a binding activity of a test compound to a receptor target molecule using a mixture of biologically relevant target molecule. Further described here are methods for measuring the binding activity of test compounds to various receptor (target) molecules using a heterologous mixture of biologically relevant target molecules. The target molecules in this assay may be used to assess off-target binding. In one aspect, the method uses a competitive binding assay using a target molecule or tissue that is known to bind to a ligand. As is known from principles of radioimmunoassays (RIA), dilution curves are constructed using various concentrations of the known ligand (or “marker”) and its binding to the target molecule. Unlike RIA, the markers in the present method need not be labeled or otherwise chemically modified. Binding of the test compound, with ligand, and the tissue (target molecules) are then measured at a known concentration; then, the MS signal is compared to the MS signals obtained in the dilution curve. The effectiveness of the test compound in binding to the target molecule is then known, and an IC.sub.50 or EC.sub.50 can be determined.
[0046] In the present methods, binding characteristics of test compounds to different target molecules can be determined in a multiplex procedure. The present methods also relate to in vitro methods for studying drug candidates.
[0047] The present methods can use commercially available high performance liquid chromatography (HPLC) and MS equipment. The MS format can be electrospray from a well, or use a matrix in a matrix-assisted laser desorption/ionization (MALDI) format, or use other ionization technique.
[0048] The present methods can be automated using laboratory robotics. All the separations and reactions in the method are contained in the same sample well until such time as recovered molecules are input into the HPLC. A sample plate with any number of desired wells can be used.
[0049] A variety of target molecules may be prepared for use in the present methods. Crude or purified extracts may be used, e.g. by methods disclosed in U.S. Pat. No. 4,446,122, “Purified human prostate antigen;” U.S. Pat. No. 6,548,019, “Device and methods for single step collection and assaying of biological fluids;” Magomedova et al., “Quantification of Oxysterol Nuclear Receptor Ligands by LC/MS/MS;” Methods Mol. Biol. 2019; 1951:1-14; and Wang, “Purification and autophosphorylation of insulin receptors from rat skeletal muscle,” Biochim Biophys Acta. 1986 Aug. 29;888(1):107-15, all hereby incorporated herein by reference.
[0050] Use of a glass filter to prepare a sample for MS analysis may be carried out a described, e.g., in Merck Millipore, “Perfection in preparation for better mass spectra,” Merck Millipore product sheet, 2012 retrieved at http (colon slash slash www. merckmillipore.com/INTERSHOP/web/WFS/Merck-JP-Site/ja_JP/-/JPY/ShowDocument-Pronet id=201306.10657.
Definitions
[0051] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by those of ordinary skill in the art to which this invention belongs. Although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods and materials are described. Generally, nomenclatures utilized in connection with, and techniques of, cell and molecular biology and chemistry are those well-known and commonly used in the art. Certain experimental techniques, not specifically defined, are generally performed according to conventional methods well known in the art and as described in various general and more specific references that are cited and discussed throughout the present specification. For purposes of the clarity, following terms are defined below.
[0052] Where a range of values is provided, it is understood that each intervening value, to the tenth of the unit of the lower limit unless the context clearly dictates otherwise, between the upper and lower limit of that range and any other stated or intervening value in that stated range, is encompassed within the methods, cells, compositions and kits. The upper and lower limits of these smaller ranges may independently be included in the smaller ranges and are also encompassed within the methods, cells, compositions and kits, subject to any specifically excluded limit in the stated range. Where the stated range includes one or both of the limits, ranges excluding either or both of those included limits are also included in the methods, cells, compositions and kits.
[0053] Certain ranges are presented herein with numerical values being preceded by the term “about.” The term “about” is used herein to provide literal support for the exact number that it precedes, as well as a number that is near to or approximately the number that the term precedes. In determining whether a number is near to or approximately a specifically recited number, the near or approximating unrecited number may be a number which, in the context in which it is presented, provides the substantial equivalent of the specifically recited number.
[0054] All publications and patents cited in this specification are herein incorporated by reference as if each individual publication or patent were specifically and individually indicated to be incorporated by reference and are incorporated herein by reference to disclose and describe the materials and/or methods in connection with which the publications are cited. The citation of any publication is for its disclosure prior to the filing date and should not be construed as an admission that the present methods, cells, compositions and kits are not entitled to antedate such publication, as the date of publication provided may be different from the actual publication date which may need to be independently confirmed.
[0055] It is noted that, as used herein and in the appended claims, the singular forms “a”, “an”, and “the” include plural referents unless the context clearly dictates otherwise. It is further noted that the claims may be drafted to exclude any optional element. As such, this statement is intended to serve as antecedent basis for use of such exclusive terminology as “solely,” “only” and the like in connection with the recitation of claim elements, or use of a “negative” limitation.
[0056] The term “affinity” is used in a conventional sense to refer binding affinity. Binding affinity is the strength of the binding interaction between a single biomolecule (e.g. protein) to its ligand/binding partner (e.g. drug or inhibitor). Binding affinity is typically measured and reported by the equilibrium dissociation constant (Kd), which is used to evaluate and rank order strengths of bimolecular interactions. Accordingly, binding kinetics describe how fast a compound binds to its target and how fast it dissociates from it. So, it measures two things—the on-rate and the off-rate. See, U.S. Pat. No. 5,324,633A, “Method and apparatus for measuring binding affinity.”
[0057] The term “ligand,” or “binder” is used herein to refer to a material that is known to bind to a given receptor or other target molecule. This term may be further understood by reference to Siimans et al., U.S. Pat. No. 5,814,498, “Methods of enumerating receptor molecules for specific binding partners on formed bodies and in solution,” hereby incorporated by reference as providing concepts of competitive binding.
[0058] A “mixture of targets” or target molecules means a mixture of structurally different targets or other receptor target molecules. As a non-limiting example, this mixture can comprises glutamate receptors, D1dopamine receptors, and nicotinic acetylcholine receptors. These receptors may be present in a single tissue type, such as a brain cerebral cortex of an animal or may not be present in a single tissue type. The mixture of targets can also include, for example, glutamate receptors (from cerebral cortex) and VEGF receptors (from endothelial cells). See below, “heterologous mixture of receptor target molecules”.
[0059] A “heterologous mixture of target molecules” refers to a mixture of different target molecules that are not found in nature in a single tissue, or, if present in the same tissue, have different biological functions. As a non-limiting example, this mixture may comprise more than one tissue selected from the group consisting of engineered cells expressing G-protein-coupled receptors (GPCRs), animal-sourced cerebral cortex (having 15 different targets molecules, as described e.g. in Zilles et al., “Multiple Transmitter Receptors in Regions and Layers of the Human Cerebral Cortex,” Front Neuroanat. 11:78 (2017)), cerebellum, cardiac, muscle (including cardiac ion channels), biological enzymes (e.g. COX2, COX1, MAO, PDE4, Ache, LCK), nuclear receptors (e.g. AR and NR3C1) and nucleic acid molecules.
[0060] The target molecules will comprise desired binding and binding that is not desired, known as off-target binding. As discussed above, off-target binding is generally avoided for safety reasons. See Bowes et al. and Eurofins Safety Panels, h-t-t-ps-:slash-slash www(dot).eurofinsdiscoveryservices.com/cms/cms-content/services/safety-and-efficacy/safety-pharmacology/safety-panels/, discloses a selection of in vitro Safety Panels.
[0061] The term “MS” means mass spectrometry. In the present method, a variety of mass spectrometry methods can be used, e.g., AMS (Accelerator Mass Spectrometry), Gas Chromatography-MS, Liquid Chromatography-MS, ICP-MS (Inductively Coupled Plasma-Mass spectrometry), IRMS (Isotope Ratio Mass Spectrometry), Ion Mobility Spectrometry-MS, MALDI-TOF, SELDI-TOF, Tandem MS, TIMS (Thermal Ionization-Mass Spectrometry), and SSMS (Spark Source Mass Spectrometry).
[0062] The term “multiplex” refers to an assay in which multiple different analyses are conducted in a single procedure, using different target molecules having different ligands. The process may also comprise having different test compounds. The binding of a test compound to different target molecules that do not exist together in nature can be carried out simultaneously in a multiplex assay. Furthermore, a multiplex assay may produce multiple results from a single mixture of target receptors and yield a binding profile to different target molecules that will elucidate off target binding and, thus, safety.
[0063] The term “liquid chromatography/electrospray ionization tandem mass spectroscopy” may be further understood by reference to, e.g., Bandu et al., “Liquid Chromatography Electrospray Ionization Tandem Mass Spectrometric (LC/ESI-MS/MS) Study for the Identification and Characterization of In Vivo Metabolites of Cisplatin in Rat Kidney Cancer Tissues: Online Hydrogen/Deuterium (H/D) Exchange Study,” PLosOne 2015 Aug. 5:10(8).
[0064] The term “receptor target molecule” or “target molecule” or “receptor molecule” refers to a biological compound for which binding of a test compound is to be measured. A given receptor target molecule may be present in a target tissue obtained from a cell, an animal (human or nonhuman). It may be produced by recombinant DNA, or otherwise synthesized so as to contain one or more target molecules of interest. It may be membrane bound or exist in a liquid mixture, such as an enzyme. Potential receptor target tissues used herein may be cerebral cortex, brain astrocytes, neuronal tissues (including neuronal stem cells), cardiac tissues, liver tissues, blood tissues, kidney tissues, eye tissues, gut tissues, etc. The target tissue may be normal or diseased. It may be derived from an animal source or a human source. The term “heterologous mixture of target molecules “refers to tissues or cell lines from different origins, as illustrated above. Tissues may be different tissues if from the same tissue, but the tissues have different structure, due to disease, state of development, or the like.
[0065] The term “synthetic protein preparation” means a preparation of a protein that was synthesized rather than obtained from a native cell or tissue. The synthetic protein preparation may be synthesized by recombinant DNA methods, peptide synthesis, or the like.
[0066] The term “test compound” means material that is under study for its binding affinity for target molecules. It will interact with and compete with the known ligand (marker) if it binds to a target molecule that is also bound by the marker. The test compound may be a potential drug, as well as metabolites of such drug. It may be a small molecule or a protein or polynucleotide. It may also be a molecule that is being tested because of its potential in vivo diagnostic application.
Generalized Method and Apparatus
[0067] The present methods can be adapted to a wide variety of test compounds and a wide variety of targets for which binding characteristics of test compounds are to be elucidated. Of particular interest is the study of test compounds that are drug candidates for in vivo human use. The binding of test compounds to various target molecules represented by various tissues are studied in the present methods. Binding is either desired for a therapeutic effect or is not desired to avoid off target effects, as a matter of drug safety. As such, the present methods find use, e.g., in the identification of potential human therapeutics and their potential undesired binding to various human tissues expressing potential targets for test compound binding.
EXAMPLES
Example 1: Workflow
[0068] Referring now to
[0069]
[0070] After recovery of previously bound ligand molecules, the amount of ligand obtained from each well is quantitated by liquid chromatography and electrospray MS (mass spectroscopy) (step (d) in
[0071]
[0072] In another embodiment of the present methods, a fixed amount of test compound may be measured under different concentrations of ligands (known binders). That is, an excess of test compound is used, if such is available and different amounts of ligands are used. Ligand is competed off the test compound-target molecule complex to determine binding behavior of the test compound to the target molecule.
[0073] Further,
[0074] In addition, the receptor target molecules may be prepared without the use of endogenous tissue, but, rather, prepared by rDNA or protein synthesis. Known cloned receptors useful in the present methods include H3 histamine receptors, opioid receptors, G protein-coupled receptors, vanilloid receptors, glutamate receptors, etc.
[0075] The multiplex methods here are carried out on multiple reaction areas (wells) shown as F, G and H, for an 8 row, 96 well plate (as shown in 101). 384 well plate or other multi-well formats can be used. In this example, receptor target molecule were prepared with ligand and test compounds and incubating the multiplex at 2 h, 37° C. in a 96 well plate. As shown in the insert below 107 panel (a), a well comprises a number of receptors bound to ligands 105 and a number of receptors 104 bound to the test compound 106 instead of the ligand 105.
[0076] After incubation in step (a), the complexes of target molecule receptors bound to target molecules are separated from unbound ligands and free target molecules by filtration. Vacuum filtration is simultaneously applied over the plate (
[0077] Once the bound ligand is isolated from free ligands, the complexes can be washed with a low ionic strength buffer and finally eluted using an organic buffer or high ionic strength buffer, effectively isolating ligand-bound receptors for processing in step (c). The receptors may also be tagged with magnetic beads and processed as described above. Accordingly, as shown in
[0078] Referring now to
[0079] A calibration curve with known concentrations is used to quantify the amount of test compound that competed off the ligand and bound to the receptor test molecule. Other different mass spectroscopy methods, as detailed above can be used, provided that they do not produce excessive extraneous data.
[0080] It should be noted that the known binder, i.e. the marker, is unlabeled (as is the test compound). This is a key advantage of the present MS method over the RIA (radioimmunoassay) method. RIA is also based on competition between a known binder and a test compound, but requires that the marker be radio-labelled in order to achieve the desired sensitivity. In an alternative embodiment, a label such as deuterium can be added for increased sensitivity.
[0081] Further details on liquid chromatography/electrospray ionization tandem mass spectroscopy may be found in Becker, U.S. Pat. No. 6,835,927, “Mass spectrometric quantification of chemical mixture components,” hereby incorporated by reference.
[0082] Thus,
Example 2: Comparability Between Present MS Method and RIA Method
[0083] Referring now to
[0084] The SNR (signal to noise) was determined as follows (Table 4):
TABLE-US-00004 TABLE 4 SNR 6 8 Batrachotoxin (Kd = 91 nM) 143 nM (EC50) Veratridine 5.6 μM (IC50) 12.2 μM (IC50)
[0085]
Materials and methods:
Rat Cortex Membrane Preparation
[0086] Rat cortexes from Wistar male rats were harvested and transferred to 50 mM Tris-HCl (pH, 7.4) and homogenized by a polyton. The homogenate was centrifuged 50 000 g for 15 minutes at 4° C. The resultant pellet was washed in lyses buffer containing 50 mM Tris-HCl (pH, 7.4) containing 1 μg/ml Leupeptin and 1 μM Pepstatin and was centrifuged 50 000 g for 15 minutes at 4° C. The pellet was finally resuspended in a smaller volume of lyses buffer and the final protein concentration was determined according to the Bradford method using bovine serum albumin as a standard.
Filtration and Elution of Samples
[0087] Incubation was terminated by filtration after transfer of the binding sample (aliquot of 200 μl per well) onto 96-well glass filter plates and subsequently filtered rapidly under vacuum the membrane fraction bound to the filters were rinsed several times with wash buffer (50 mM Tris-HCl and 150 mM NaCl) on a vacuum manifold. Membrane filters were pretreated for 1 hour with 50 mM Tris-HCl and 0.3% of Polyethyleneimine solution (PEI).
[0088] The filters were dried for one hour at 50° C. and cooled to room temperature before elution of Batrachotoxin using a acetonitrile (contained 100 pM of antipyrine as an internal standard) via a vacuum manifold. Relative quantification of ligand in each sample was performed by UHPLC-MS-MS, the ratio area of ligand and internal standard was used.
UHPLC-MS/MS Method Development
[0089] UHPLC-QQQ analysis was performed by a 1290 Infinity Binary LC system (Agnelli Technologies, Waldbronn, Germany) coupled to a Q-TRAP 5500 mass spectrometer with an ESI Turbo V ion source (SCIEX, Foster City, Calif., USA).
[0090] Chromatographic separation was performed on C.sub.18 column (Poroshell 120 EC-C18, Agilent). The injection volume was 20 μl (full loop injection). The mobile phase consisted of two solutions including solvent A (0.1% formic acid and 6 mM ammonium acetate in water) and solvent B (0.1% formic acid and 6 mM ammonium acetate in acetonitrile), the column was thermostated in an oven at 35° C. and the flow rate was 650 μl/min.
[0091] The chromatographic gradient used for C18 column; initial composition of B was 0% during 0.3 min and increased to 80% from 0.3 to 0.9 min then 100% was reached at 1 min until 1.3 min, followed by re-equilibration to initial condition during 0.3 min.
[0092] For MS analysis, data were acquired using electrospray ionization (ESI) in positive mode, the Ion Spray Voltage was set at 5 500 V. The desolvation in source was accomplished using the following set parameters: Temperature (TEM) at 600° C., Ion Source Gas 1 (GS1) at 40 PSI, Ion Source Gas 2 (GS2) at 50 PSI, and Curtain Gas (CUR) at 50 PSI. The specific parameters of MRM method which to permit to quantify and monitored the ligand (Batrachotoxin) is described in Table 5. Raw Data were processed in Sciex Analyst and individual AUC (area under the curve) for each analyte in each sample was determined using the MultiQuant software.
TABLE-US-00005 TABLE 5 MRM method Q1 Mass Q3 Mass Time DP EP CE CXP (Da) (Da) (msec) ID (volts) (volts) (volts) (volts) 539.2 400.2 150 Batrachotoxin 140 10 23 12 DP: declustering potential, EP: entrance potential, CE: collision energy and CXP: Collision Cell Exit Potential.
Binding by MS Experiments
Optimal Concentration of Ligand Determination
[0093] Cortex membrane preparations containing the sodium channel (Na.sup.+) site 2 receptor and Batrachotoxin were incubated in triplicate in assay buffer (50 mM Hepes/Tris-HCl, 0.8 mM MgSO.sub.4, 5 mM KCl, 7.5 mg/l scorpion venon, 2 mM MgCl2, 10 μg/ml trypsin, 1 g/l glucose, 130 mM chloline, 1 μg/ml leupeptin, 1 μg/ml pepstatin and 0.1% BSA) in polypropylene 96-deep-well plates at 37° C. Initially, 12 concentrations (in range from 10 μM to 300 nM) of Batrachotoxin was co-incubated for 60 minutes at 37° C., with 1 concentration (200 μg/well) of the rat cortex membrane preparation.
[0094] Non-specific binding was determined by the co-incubation with 10 μM verapamil.
[0095] The incubation was terminated by filtration after transfer of the total volume of the binding reaction to a filter plate. The remaining quantity of Batrachotoxin was determined by UHPLC-MS/MS.
For Saturation Assays:
[0096] Membrane aliquots containing 200 μg of rat cortex membrane preparation were incubated in triplicate in the presence of 50 nM of Batrachotoxin in a total volume of 200 μl of assay buffer. Incubation was terminated by filtration after incubation for 60 minutes at 37° C.
[0097] Non-specific binding was determined by the co-incubation with 10 μM of verapamil.
[0098] The incubation was terminated by filtration after transfer of the total volume of the binding reaction to the filter plate. The remaining quantity of Batrachotoxin was determined by UHPLC-MS/MS.
Mass Binding Competitive Assays:
[0099] The ligand displacement assays were performed using eight concentrations of the competing ligand, Veratridine (in a range from 0.1 nM to 100 μM) in triplicate. Incubation was terminated by filtration after incubation for 60 minutes at 37° C. The remaining quantity of Batrachotoxin was determined by UHPLC-MS/MS.
Example 3: Multiplexing with 2 Simultaneous Targets
[0100]
[0101] Now referring to
[0102] WB4101 is a known antagonist of the α1B-adrenergic receptor. Prazosine is a drug known as a binder of the alpha-1 (α1) adrenergic receptor, which is a G protein-coupled receptor (GPCR). These receptors are found on vascular smooth muscle. RX821002 is a potent, selective α2-adrenoceptor antagonist.
[0103] This example used target molecule comprising both alpha 1 and alpha 2 beta adeno receptors incubated with WB4101 (test compound) in the presence prazosine (ligand, or “marker” for alpha 1) and RX821002 (ligand, or “marker” for alpha 2) as shown in
[0104] As shown in
Rat Cortex Membrane Preparation
[0105] Rat cortexes from Wistar male rats were harvested and transferred to 50 mM Tris-HCl (pH, 7.4) and homogenized by a polyton. The homogenate was centrifuged 50 000 g for 15 minutes at 4° C. The resultant pellet was washed in lyses buffer containing 50 mM Tris-HCl (pH, 7.4) containing 1 μg/ml Leupeptin and 1 μM Pepstatin and was centrifuged 50 000 g for 15 minutes at 4° C. The pellet was finally resuspended in a smaller volume of lyses buffer and the final protein concentration was determined according to the Bradford method using bovine serum albumin as a standard.
Filtration and Elution of Samples
[0106] Incubation was terminated by filtration after transfer of the binding sample (aliquot of 200 μl per well) onto 96-well glass filter plates and subsequently filtered rapidly under vacuum the membrane fraction bound to the filters were rinsed several times with wash buffer (50 mM Tris-HCl and 150 mM NaCl) on a vacuum manifold. Membrane filters were pretreated for 1 hour with 50 mM Tris/HCl and 0.3% of Polyethyleneimine solution (PEI).
[0107] The filters were dried for one hour at 50° C. and cooled to room temperature before elution of ligands using a acetonitrile (contained 100 μM of antipyrine as an internal standard) via a vacuum manifold. Relative quantification of ligand in each sample was performed by UHPLC-MS-MS, the ratio area of ligand and internal standard was used.
UHPLC-MS/MS Method Development
[0108] UHPLC-QQQ analysis was performed by a 1290 Infinity Binary LC system (Agilent Technologies, Waldbronn, Germany) coupled to a Q-TRAP 5500 mass spectrometer with an ESI Turbo V ion source (SCIEX, Foster City, Calif., USA).
[0109] Chromatographic separation was performed on C.sub.18 column (Poroshell 120 EC-C18, Agilent). The injection volume was 20 μl (full loop injection). The mobile phase consisted of two solutions including solvent A (0.1% formic acid and 6 mM ammonium acetate in water) and solvent B (0.1% formic acid and 6 mM ammonium acetate in acetonitrile), the column was thermostated in an oven at 35° C. and the flow rate was 650 μl/min.
[0110] The chromatographic gradient used for C18 column; initial composition of B was 0% during 0.3 min and increased to 80% from 0.3 to 0.9 min then 100% was reached at 1 min until 1.3 min, followed by re-equilibration to initial condition during 0.3 min.
[0111] For MS analysis, data were acquired using electrospray ionization (ESI) in positive mode, the Ion Spray Voltage was set at 5 500 V. The desolvation in source was accomplished using the following set parameters: Temperature (TEM) at 600° C., Ion Source Gas 1 (GS1) at 40 PSI, Ion Source Gas 2 (GS2) at 50 PSI, and Curtain Gas (CUR) at 50 PSI. The specific parameters of MRM method which to permit to quantify and monitored the prazosine (ligand, or “marker” for alpha 1) and RX821002 (ligand, or “marker” for alpha 2) are described in Table 6. Raw Data were processed in Sciex Analyst and individual AUC (area under the curve) for each analyte in each sample was determined using MultiQuant software.
TABLE-US-00006 TABLE 6 Q1 Mass Q3 Mass Time DP EP CE CXP (Da) (Da) (msec) ID (volts) (volts) (volts) (volts) 384.300 231.162 100 Prazosine 140 10 56 9 235.100 203.000 100 RX821002 40 10 21 23 DP: declustering potential, EP: entrance potential, CE: collision energy and CXP: Collision Cell Exit Potential.
Binding by MS Experiments
Optimal Concentration of Ligand Determination
[0112] Rat cortex membrane preparations containing both alpha 1 non-selective (α1 NS) and alpha 2 non-selective (α2 NS) receptors were co-incubated with and Prazosine (specific ligand of α1 NS) and RX821002 (specific ligand of α2 NS) simultaneously. The assay was performed in triplicate in the assay buffer (50 mM Tris-HCl, 5 mM EDTA/Tris, 150 mM NaCl, 5 mM KCl, 2 mM MgCl2 and 0.1% BSA) in polypropylene 96-deep-well plates at 22° C. Initially, 12 concentrations (in a range from 0.1 nM to 300 nM) of Prazosine and RX821002 were co-incubated for 60 minutes at 22° C., with 3 concentrations (200 μg/well) of the rat cortex membrane preparations.
[0113] Non-specific binding was determined by the co-incubation with 10 μM WB 4101 and Yohimbine.
[0114] The incubation was terminated by filtration after transfer of the total volume of the binding reaction to a filter plate. The remaining quantity of both Prazosine and RX821002 was determined by UHPLC-MS/MS.
Mass Binding Competitive Assays:
[0115] The ligand displacement assays was performed using 12 concentrations of the competing ligands, WB4101 (inhibitor of α1 NS) and Yohimbine (inhibitor of α2 NS) (in a range from 0.1 nM to 100 μM), and 0.3 nM of Prazosine and 1 nM of RX821002. They were co-incubated with 200 μg/well of rat membrane cortex in assay buffer, in triplicate. Incubation was terminated by filtration after incubation for 60 minutes at 22° C. The remaining quantity of both Prazosine and RX821002 was determined by UHPLC-MS/MS to be an alpha-2 adrenergic antagonist.
Example 4: Multiplexing Different Target Molecules
[0116]
[0117] As shown in
[0118] The experiment in the
TABLE-US-00007 TABLE 7 FIG. Target molecule Marker ligand Test compound 4A Adenosine receptor A1 CPX NECA 4B Muscarinic pyrenzepine Atropine acetylcholine receptor 4C 5-HT.sub.2A (serotonin) 8-OH-DPAT Serotonin 4D Alpha-1A adrenergic prazosine WB4101 receptor 4E Alpha-2A adrenergic RX82102 Yohmbine receptor 4F Dopamine receptor D1 SCH23390 Butaclamol 4G 5HT transporter paroxetine Zimeldine 4H 5-HT (serotonin) EMD281014 Serotonin 4I Ca++ channel D600 D888 4J Opioid receptor naloxone DAMGO 4K PCP (Sigma type MK801 SKF10047 opioid receptor)
Materials and Methods:
Rat Cortex Membrane Preparation
[0119] Rat cortexes from wister male rats were harvested and transferred to 50 mM Tris-HCl (pH, 7.4) and homogenized by a polyton. The homogenate was centrifuged 50 000 g for 15 minutes at 4° C. The resultant pellet was washed in lyses buffer containing 50 mM Tris-HCl (pH, 7.4) containing 1 μg/m1Leupeptin and 1 μM Pepstatin and was centrifuged 50 000 g for 15 minutes at 4° C. The pellet was finally resuspended in a smaller volume of lyses buffer and the final protein concentration was determined according to the Bradford method using bovine serum albumin as a standard.
Filtration and Elution of Samples
[0120] Incubation was terminated by filtration after transfer of the binding sample (aliquot of 200 μl per well) onto 96-well glass filter plates and subsequently filtered rapidly under vacuum the membrane fraction bound to the filters were rinsed several times with wash buffer (50 mM Tris-HCl and 150 mM NaCl) on a vacuum manifold. Membrane filters were pretreated for 1 hour with 50 mM Tris/HCl and 0.3% of Polyethyleneimine solution (PEI).
[0121] The filters were dried for one hour at 50° C. and cooled to room temperature before elution of specific ligands using a acetonitrile (contained 100 μM of antipyrine as an internal standard) via a vacuum manifold. Relative quantification of ligand in each sample was performed by UHPLC-MS-MS, the ratio area of ligand and internal standard was used.
UHPLC-MS/MS Method Development
[0122] UHPLC-QQQ analysis was performed by a 1290 Infinity Binary LC system (Agilent Technologies, Waldbronn, Germany) coupled to a Q-TRAP 5500 mass spectrometer with an ESI Turbo V ion source (SCIEX, Foster City, Calif., USA).
[0123] Chromatographic separation was performed on C.sub.18 column (Poroshell 120 EC-C18, Agilent). The injection volume was 20 μl (full loop injection). The mobile phase consisted of two solutions including solvent A (0.1% formic acid and 6 mM ammonium acetate in water) and solvent B (0.1% formic acid and 6 mM ammonium acetate in acetonitrile), the column was thermostated in an oven at 35° C. and the flow rate was 650 μl/min.
[0124] The chromatographic gradient used for C18 column; initial composition of B was 0% during 0.3 min and increased to 80% from 0.3 to 0.9 min then 100% was reached at 1 min until 1.3 min, followed by re-equilibration to initial condition during 0.3 min.
[0125] For MS analysis, data were acquired using electrospray ionization (ESI) in positive mode, the Ion Spray Voltage was set at 5 500 V. The desolvation in source was accomplished using the following set parameters: Temperature (TEM) at 600° C., Ion Source Gas 1 (GS1) at 40 PSI, Ion Source Gas 2 (GS2) at 50 PSI, and Curtain Gas (CUR) at 50 PSI. The specific parameters of MRM method which to permit to quantify and monitored the ligands are described in Table 8. Raw Data were processed in Sciex Analyst and individual AUC (area under the curve) for each analyte in each sample was determined using the MultiQuant software.
TABLE-US-00008 TABLE 8 Q1 Mass Q3 Mass Time DP EP CE CXP (Da) (Da) (msec) ID (volts) (volts) (volts) (volts) 305.200 263.100 150 CPX 100 10 32 11 352.200 113.000 150 PIRENZEPINE 80 10 27 18 384.142 95.000 150 PRAZOSINE 196 10 77 14 235.100 203.100 150 RX821002 20 10 23 9 288.100 179.115 150 SCH23390 10 10 31 8 248.100 147.100 150 8-OH-DPAT 40 10 28 7 377.200 209.200 150 EMD281014 20 10 31 9 330.100 192.200 150 PAROXETINE 40 10 29 8 485.500 165.100 150 D600 60 10 37 22 222.100 178.100 150 MK801 50 10 54 8 328.100 212.200 150 NALOXONE 60 10 53 9 DP: de-clustering potential, EP: entrance potential, CE: collision energy and CXP: Collision Cell Exit Potential.
Binding by MS Experiments
Mass Binding Competitive Assays:
[0126] The ligand displacement assays was performed using rat cortex membrane preparations naturally containing the following receptors A1 (adenosine), M1 (muscarinic), Alpha1ns (adrenergic), Alpha2 ns (adrenergic), D1 (dopamine), 5HT1a (serotonin), 5HT2a (serotonin), 5HTtrans (serotonin), Ca.sup.2+ channel (verapamil site), Glutamate (Non-Selective) Rat Ion Channel, and Opioid non selective receptors.
TABLE-US-00009 TABLE 9 Specific Ligand/ Receptor concentration used Inhibitor A1—adenosine CPX/1 nM NECA M1—muscarinic PIRENZEPINE/1 nM atropine Alpha1ns—adrenergic PRAZOSINE/1 nM WB 4101 Alpha2ns—adrenergic RX821002/1 nM Yohimbine D1—dopamine SCH23390/1 nM Butaclamol 5HT1a—serotonin 8-OH-DPAT/5 nM serotonin 5HT2a—serotonin EMD281014/1 nM serotonin 5HTtrans—serotonin PAROXETINE/1 nM Zimelidine Cave (Ca channel) D600/1 nM D888 PCP—Sigma type opioid MK801/5 nM SKF10047 receptor Opioid ns NALOXONE/1 nM DAMGO
[0127] The ligand displacement assays were performed using 8 concentrations of the inhibitor (see Table 9) (in a range from 0.1 nM to 100 μM) and a mixture of a single concentration of each specific ligand (see Table 9). They were co-incubated with 200 μg/well of rat membrane cortex in assay buffer (50 mM Tris-HCl, 5 mM EDTA/Tris, 150 mM NaCl, 5 mM KCl, 2 mM MgCl2 and 0.1% BSA), in triplicate. Incubation was terminated by filtration after incubation for 60 minutes at 22° C. The remaining quantity of each specific ligand (see Table 9) was determined by UHPLC-MS/MS.
Example 5: Multiplexing Different, Heterologous Tissues—Ex Vivo Membranes: Rat Cortex, Rat Cerebellum and Rat Ventricular Tissue
[0128] This example shows multiplexing an MS competing binding assay as described, but different tissues in the same experiment.
[0129] Results are shown in the Table 10 below. Different tissues are used in this example. Exemplary tissue sources for target molecule receptors are cerebral cortex, cerebellum, and ventricular membrane (rat or human). The binding assays shown in column 1 were A1, M1, etc. In each case, a known ligand (shown as [ligand] in column 2) was added and the extent of binding to the tissues studied was measures. The known (marker) ligands were as used in Example 4. A calibration curve was prepared. As shown below, SNR indicates signal to noise and % CV indicates percent coefficient of variation.
TABLE-US-00010 TABLE 10 ventricular Binding rat cortex cerebellum (membrane) assay 180 μg 180 μg 180 μg A1 [ligand]: nM 0.1 1 5 SNR: 7 4.5 1.5 % CV 5.30 3.7 51.6 M1 [ligand]: nM 5 SNR: 17.5 % CV 6.5 Alpha 1ns [ligand]: nM 0.1 0.1 0.1 SNR: 53.7 13.5 28.1 % CV 12 25.7 13.1 Alpha 2 ns [ligand]: nM 0.1 1 SNR: 51.3 11.2 % CV 4.2 6.5 D1 [ligand]: nM 1 SNR: 46.6 % CV 7.7 5HT1a [ligand]: nM 1 SNR: 4.1 % CV 32.7 5HT2a [ligand]: nM 0.1 0.1 1 SNR: 14.2 2.5 2.3 % CV 12.2 80.4 113.4 5HT trans [ligand]: nM 0.1 0.1 0.1 SNR: 5 2.5 2.8 % CV 6.9 29.4 127.5 CAVE [ligand]: nM 1 0.1 SNR: 2.4 3.2 % CV 7 31.7 PCP [ligand]: nM 10 50 SNR: 2.2 2.4 % CV 26.9 27.4 OPIOID ns [ligand]: nM 1 SNR: 9.8 % CV 8.7
Example 6: Multiplexing in a Single Well—Mass Binding of 20 Ligands in Mixtures of Rat Ex Vivo Membranes or Mixtures of Recombinant Membranes
[0130] In this example, different tissues and/or receptor molecules are combined in the same well in a single reaction. Rat cortex, cerebellum, and ventricular membrane are added to a single well and a series of reaction are carried out, using ligands as shown in Example 5. Materials and methods:
Ex Vivo Membrane Preparation
[0131] Rat cortexes from wister male rats are harvested and transferred to 50 mM Tris-HCl (pH, 7.4) and homogenized by a polyton. The homogenate was centrifuged 50 000 g for 15 minutes at 4° C. The resultant pellet is washed in lyses buffer containing 50 mM Tris-HCl (pH, 7.4) containing 1 μg/ml Leupeptin and 1 μM Pepstatin and is centrifuged 50 000 g for 15 minutes at 4° C. The pellet is finally resuspended in a smaller volume of lyses buffer and the final protein concentration is determined according to the Bradford method using bovine serum albumin as a standard.
[0132] Rat cerebellum, hepatic and ventricular membrane preparations are performed as described above.
Recombinant Membrane Preparation
Cell Culture and Expression
[0133] A stable transfection of a human cell line is performed using suitable expression vector containing the coding sequences for the receptor of interest. Single colonies of stably transfected cells are further cultivated in selection media using a specific antibiotic. Final clone selection is based on binding affinities of clones for a specific ligand.
Membrane Extraction
[0134] A dry cell pellet of a clone of a human cells stably expressing the receptor of interest was resuspended in lysis buffer (50 mM Tris-HCl, 5 mM Tris-EDTA, 20 mM NaCl, 1.5 mM CaCl2, 5 mM MgCl2, 10 μg/ml trypsin inhibitor, 1 μg/ml leupeptin, 75 μg/ml PMSF). The cells are lysed using an ultrasonic probe (Sonifier 250, Branson). The cell lysate is centrifuged at 50 000 xg for 15 minutes at 4° C. The membrane pellet is resuspended in lysis buffer containing 10% (v/v) glycerol and the final protein concentration is determined according to the Bradford method using bovine serum albumin as a standard.
Filtration and Elution of Samples
[0135] Incubation is terminated by filtration after transfer of the binding sample (aliquot of 200 μl per well) onto 96-well glass filter plates and subsequently filtered rapidly under vacuum the membrane fraction bound to the filters are rinsed several times with wash buffer (50 mM Tris-HCl and 150 mM NaCl) on a vacuum manifold. Membrane filters are pretreated for 1 hour with 50 mM Tris/HCl and 0.3% of Polyethyleneimine solution (PEI).
[0136] The filters are dried for one hour at 50° C. and cooled to room temperature before elution of specific ligands using a acetonitrile (contained 100 μM of antipyrine as an internal standard) via a vacuum manifold. Relative quantification of ligand in each sample is performed by UHPLC-MS-MS, the ratio area of ligand and internal standard is used.
UHPLC-MS/MS Method Development
[0137] UHPLC-QQQ analysis is performed by a 1290 Infinity Binary LC system (Agilent Technologies, Waldbronn, Germany) coupled to a Q-TRAP 5500 mass spectrometer with an ESI Turbo V ion source (SCIEX, Foster City, Calif., USA).
[0138] Chromatographic separation is performed on C.sub.18 column (Poroshell 120 EC-C18, Agilent). The injection volume is 20 μl (full loop injection). The mobile phase consisted of two solutions including solvent A (0.1% formic acid and 6 mM ammonium acetate in water) and solvent B (0.1% formic acid and 6 mM ammonium acetate in acetonitrile), the column is thermostated in an oven at 35° C. and the flow rate is 650 μl/min.
[0139] The chromatographic gradient used for C.sub.18 column; initial composition of B is 0% during 0.3 min and increased to 80% from 0.3 to 0.9 min then 100% is reached at 1 min until 1.3 min, followed by re-equilibration to initial condition during 0.3 min.
[0140] For MS analysis, data are acquired using electrospray ionization (ESI) in positive mode, the Ion Spray Voltage is set at 5 500 V. The desolvation in source is accomplished using the following set parameters: Temperature (TEM) at 600° C., Ion Source Gas 1 (GS1) at 40 PSI, Ion Source Gas 2 (GS2) at 50 PSI, and Curtain Gas (CUR) at 50 PSI. The specific parameters of MRM method which to permit to quantify and monitored the ligands is described in Table 11. Raw Data are processed in Sciex Analyst and individual AUC (area under the curve) for each analyte in each sample is determined using the MultiQuant software.
TABLE-US-00011 TABLE 11 Q1 Mass Q3 Mass Time DP EP CE CXP (Da) (Da) (msec) ID (volts) (volts) (volts) (volts) 305.200 263.100 50 CPX 100 10 32 11 408.1 219.2 50 CGS 21680 131 10 35 10 300.2 270.2 50 AB-MECA 175 10 19 13 352.200 113.000 50 PIRENZEPINE 80 10 27 18 479.3 240.1 50 AF-DX 384 120 10 28 9 384.142 95.000 50 PRAZOSINE 196 10 77 14 235.100 203.100 50 RX821002 20 10 23 9 288.100 179.115 50 SCH23390 10 10 31 8 356.2 325.2 50 Methylspiprone 90 10 15 13 248.100 147.100 50 8-OH-DPAT 40 10 28 7 377.200 209.200 50 EMD281014 20 10 31 9 330.100 192.200 50 PAROXETINE 40 10 29 8 485.500 165.100 50 D600 60 10 37 22 222.100 178.100 50 MK801 50 10 54 8 328.100 212.100 50 NALOXONE 60 10 53 9 1052.5 958.2 50 CGP 42112A 50 10 17 10 1060.6 938.5 50 Bradykinine 75 10 22 16 352.200 113.000 50 CP 55,940 80 10 27 18 1064.2 1001.2 50 CCK8 76 10 23 8 112.1 95.1 50 Histamine 159 10 24 11 497.3 434.3 50 LTD4 125 10 26 17 DP: declustering potential, EP: entrance potential, CE: collision energy and CXP: Collision Cell Exit Potential.
Binding by MS Experiments
MASS Binding Competitive Assays:
[0141] The ligand displacement assays are performed using mixtures of 4 different ex vivo membranes of rat cortex, cerebellum, ventricular and hepatic membrane preparations. An equal quantity of each tissue membrane preparation is mixed (50 μg).
[0142] Additionally, ligand displacement assays are also performed using a mixture of 20 different recombinant membranes (see Table 12), equal quantities (10 μg) of each membrane preparation is mixed.
TABLE-US-00012 TABLE 12 Receptor Specific Ligand Inhibitor A1 CPX NECA A2A (h) CGS 21680 NECA A3 (h) AB-MECA IB-MECA M1 PIRENZEPINE atropine M2 (h) AF-DX 384 4-DAMP Alpha1ns PRAZOSINE WB 4101 Alpha2ns RX821002 Yohimbine D1 SCH23390 Butaclamol D2S (h) Methylspiprone Butaclamol 5HT1a 8-OH-DPAT serotonin 5HT2a EMD281014 serotonin 5HTtrans PAROXETINE Zimelidine Cave D600 D888 PCP MK801 SKF10047 Opioid ns NALOXONE DAMGO AT2 (h) CGP 42112A Angiotensine II B2 (h) Bradykinine HOE 140 CB1 (h) CP 55,940 WIN 55,212-2 CCK1 (CCKA) CCK-8S SIB-CCK8 H4 (h) Histamine PDGF-BB CysLT1 (LTD4) (h) LTD4 MK571
[0143] Mass binding competitive assays are performed using 8 concentrations of the inhibitors (see table 12) (in a range from 0.1 nM to 100 μM) and a mixture of a single concentration (of each specific ligand (see table 12) in which each ligand is at a final concentration of 5 nM. They are co-incubated in 200 μg/well of either the ex vivo membrane mixture or a recombinant membrane mixture in assay buffer (50 mM Tris-HCl, 5 mM EDTA/Tris, 150 mM NaCl, 5 mM KCl, 2 mM MgCl2 and 0.1% BSA), in triplicate. Incubation is terminated by filtration after incubation for 60 minutes at 22° C. The remaining quantity of each specific ligand (see table) is determined by UHPLC-MS/MS.
Example 7: Multiplexing in a Single Well for Safety Testing
[0144] In this example, a combination of different tissue types is combined in individual wells as shown in the Table 13 below:
TABLE-US-00013 TABLE 13 Receptor Tissue Known Ligand/substrate GPCR, Adenosine ubiquitous throughout the Adenosine receptor A1 entire body. cyclooxygenase 2 synoviocytes, endothelial Arachidonic acid (COX2) cells, chondrocytes, osteoblasts, and monocytes/macrophages, stimulated with cytokines Monoamine Hypothalamus and Serotonin, melatonin, oxidase (MAO) hippocampal uncus norepinephrine, epinephrine Dopamine Brain (substantia nigra) dopamine transporter
[0145] The above target receptor molecules can be obtained from the listed tissue or produced in a cloned cell.
[0146] Materials and methods are carried out as described above.
Example 8A, 8B: Pharmacology K.SUB.on .and K.SUB.off .Determination
[0147]
[0148] As shown in
[0149]
[0150]
Example 8A: GABA 1b K.SUB.on./K.SUB.off
Cell Culture and Expression of GABA.SUB.B1b/2
[0151] A stable transfection of CHO—S cell line was performed using the pCi/neo vector (Promega) containing the coding sequences for the human GABA B receptor consisting of 2 units 1b (NM_021903) as well as GABA 2 (NM_005458). Single colonies of stably transfected cells were further cultivated in selection media using geneticin. Final clone selection was based on binding affinities of clones for .sup.3H[CGP54626].
Membrane Extraction
[0152] A dry cell pellet of a clone of a CHO—S cells stably expressing GABA.sub.B1b/2 resuspended in lysis buffer (50 mM Tris-HCl, 5 mM Tris-EDTA, 20 mM NaCl, 1.5 mM CaCl2, 5 mM MgCl.sub.2, 10 μg/ml trypsin inhibitor, 1 μg/ml leupeptin, 75 μg/ml PMSF). The cells were lysed using an ultrasonic probe (Sonifier 250, Branson). The cell lysate was centrifuged at 50 000 xg for 15 minutes at 4° C. The membrane pellet was resuspended in lysis buffer containing 10% (v/v) glycerol and the final protein concentration was determined according to the Bradford method using bovine serum albumin as a standard.
Filtration and Elution of Samples
[0153] Incubation was terminated by filtration after transfer of the binding sample (aliquot of 200 μl per well) onto 96-well glass filter plates and subsequently filtered rapidly under vacuum the membrane fraction bound to the filters were rinsed several times with wash buffer (50 mM Tris-HCl and 150 mM NaCl) on a vacuum manifold. Membrane filters were pretreated for 1 hour with 50 mM Tris/HCl and 0.3% of Polyethyleneimine solution (PEI).
[0154] The filters are dried for one hour at 50° C. and cooled to room temperature before elution of CGP54626 using a acetonitrile (contained 100 μM of antipyrine as an internal standard) via a vacuum manifold. Relative quantification of ligand in each sample was performed by UHPLC-MS-MS, the ratio area of ligand and internal standard was used.
UHPLC-MS/MS Method Development
[0155] UHPLC-QQQ analysis was performed by a 1290 Infinity Binary LC system (Agilent Technologies, Waldbronn, Germany) coupled to a Q-TRAP 5500 mass spectrometer with an ESI Turbo V ion source (SCIEX, Foster City, Calif., USA).
[0156] Chromatographic separation was performed on C.sub.18 column (Poroshell 120 EC-C18, Agilent). The injection volume was 20 μl (full loop injection). The mobile phase consisted of two solutions including solvent A (0.1% formic acid and 6 mM ammonium acetate in water) and solvent B (0.1% formic acid and 6 mM ammonium acetate in acetonitrile), the column was thermostated in an oven at 35° C. and the flow rate was 650 μl/min.
[0157] The chromatographic gradient used for C18 column; initial composition of B was 0% during 0.3 min and increased to 80% from 0.3 to 0.9 min then 100% was reached at 1 min until 1.3 min, followed by re-equilibration to initial condition during 0.3 min.
[0158] For MS analysis, data were acquired using electrospray ionization (ESI) in positive mode, the Ion Spray Voltage was set at 5 500 V. The desolvation in source was accomplished using the following set parameters: Temperature (TEM) at 600° C., Ion Source Gas 1 (GS1) at 40 PSI, Ion Source Gas 2 (GS2) at 50 PSI, and Curtain Gas (CUR) at 50 PSI. The specific parameters of MRM method which to permit to quantify and monitored the ligand (CGP54626) is described in Table 14. Raw Data were processed in Sciex Analyst and individual AUC (area under the curve) for each analyte in each sample was determined using the MultiQuant software.
TABLE-US-00014 TABLE 14 Q1 Mass Q3 Mass Time DP EP CE CXP (Da) (Da) (msec) ID (volts) (volts) (volts) (volts) 408.1 236.0 150 CGP54626-1 131 10 27 10 408.1 219.2 150 CGP54626-2 131 10 35 10 DP: declustering potential, EP: entrance potential, CE: collision energy and CXP: Collision Cell Exit Potential.
Binding by MS Experiments
Optimal Concentration of Receptor and Ligand Determination
[0159] Membrane preparations containing GABA.sub.B1b/2 and CGP54626 were incubated in triplicates in assay buffer (50 mM Tris-HCl, 2.5 mM CaCl2, 10 μg/ml trypsin, 1 μg/ml leupeptin, 1 μg/ml pepstatin) in polypropylene 96-deep-well plates at 22° C. Initially, 6 concentrations (0.1, 0.5, 1, 3, 5, 10, 25 and 50 nM) of CGP54626 (Tocris, ref: 1088) was co-incubated for 60 minutes at 22° C., with 3 concentrations (45, 100 and 180 μg/well) of the recombinant receptor GABA.sub.B1b/2.
[0160] Non-specific binding was determined by the co-incubation with 10 μM CGP52432.
[0161] The incubation was terminated by filtration after transfer of the total volume of the binding reaction to a filter plate. The remaining quantity of CGP54626 was determined by UHPLC-MS/MS.
For Saturation Assays:
[0162] Membrane aliquots containing 10 to 180 μg of GABA.sub.B1b/2 of protein were incubated in triplicate in the presence of 1 nM of CGP54626 in a total volume of 200 μl of assay buffer. Incubation was terminated by filtration after incubation for 60 minutes at 22° C.
[0163] Non-specific binding was determined by the co-incubation with 10 μM CGP52432
[0164] The incubation was terminated by filtration after transfer of the total volume of the binding reaction to the filter plate. The remaining quantity of CGP54626 was determined by UHPLC-MS/MS.
Mass binding association assays (K.sub.on):
[0165] Membrane aliquots containing 22.5 μg/100 μl of GABA.sub.B1b/2 membrane protein were incubated in a total volume of 2000 μl of assay buffer at 22° C. with 1 nM CGP54626. At each time point 200 μl of reaction mix was removed the incubation was terminated by filtration. The remaining quantity of CGP54626 was determined by UHPLC-MS/MS. See
[0166] Non-specific binding was determined by the co-incubation with 10 μM CGP52432.
Mass Binding Competitive Assays:
[0167] The ligand displacement assays was performed using eight concentrations of the competing ligand, CGP52432 (in a range from 1 nM to 30 μM), GABA (in a range from 10 nM to 1 mM) and baclofen (in a range from 10 nM to 1 mM). They were co-incubated with 45 μg/well of GABA.sub.B1b/2 membrane protein and 1 nM CGP54626 in assay buffer, in triplicate. Incubation was terminated by filtration after incubation for 60 minutes at 22° C. The remaining quantity of CGP54626 was determined by UHPLC-MS/MS.
Mass Binding Dissociation Assays—Displacement.
[0168] Membrane aliquots containing 22.5 μg/100 μl of GABA.sub.B1b/2 membrane protein were incubated in a total volume of 2000 μl of assay buffer at 22° C. with 1 nM CGP54626. The reaction was allowed to reach equilibrium for 60 minutes before starting the dissociation via the addition of 10 μM CPG52432. Dissociation was stopped at defined time intervals (1 to 80 minutes) via the filtration of 200 μl of the reaction mix. Samples for each time point were prepared in duplicate. The remaining quantity of CGP54626 was determined by UHPLC-MS/MS. See
Mass Binding Dissociation Assays—Dilution Method
[0169] For the determination of the K.sub.off constant by dilution 112.5 μg/100 μl of GABA.sub.B1b/2 membrane protein were incubated with 5 nM CGP54626 at 22° C. for 60 minutes. An aliquot of 22 μl was removed and added to 2178 μl of assay buffer resulting in a 1:100 dilution. Dissociation was stopped by filtration after defined time intervals (1 to 80 minutes). Samples for each time point were prepared in duplicate. The reaming quantity of CGP54626 was determined by UHPLC-MS. See
Example 8B: Binding by Mass Spectrometry Experiments Multiplexing of k.SUB.on./k.SUB.off .Determination on Either a Single Ex Vivo Membrane or Mixtures of Ex Vivo Membranes Alternatively on Mixtures of Recombinant Membranes
Preparation of Membrane Mixtures
[0170] The K.sub.on and K.sub.off determinations are performed either on rat cortex membrane or by using mixtures of 4 different ex vivo membranes of rat cortex, cerebellum, ventricular and hepatic membrane preparations. An equal quantity of each tissue membrane preparation is mixed (50 μg). Additionally, K.sub.on and K.sub.off determinations are also performed using a mix of 20 different recombinant membranes (see Table 15), equal quantities of each membrane preparation is mixed (10 μg).
TABLE-US-00015 TABLE 15 Receptor Specific Ligand Inhibitor A1 CPX NECA A2A (h) CGS 21680 NECA A3 (h) AB-MECA IB-MECA M1 PIRENZEPINE atropine M2 (h) AF-DX 384 4-DAMP Alpha1ns PRAZOSINE WB 4101 Alpha2ns RX821002 Yohimbine D1 SCH23390 Butaclamol D2S (h) Methylspiprone Butaclamol 5HT1a 8-OH-DPAT serotonin 5HT2a EMD281014 serotonin 5HTtrans PAROXETINE Zimelidine Cave D600 D888 PCP MK801 SKF10047 Opioid ns NALOXONE DAMGO AT2 (h) CGP 42112A Angiotensine II B2 (h) Bradykinine HOE 140 CB1 (h) CP 55,940 WIN 55,212-2 CCK1 (CCKA) CCK-8S SIB-CCK8 H4 (h) Histamine PDGF-BB CysLT1 (LTD4) (h) LTD4 MK571
Mass Binding Association Assays (K.SUB.on.):
[0171] Membrane aliquots containing 22.5 μg/100 μl of each membrane protein mix are incubated in a total volume of 2000 μl of assay buffer at 22° C. with a mixture of specific ligands (see Table 15) each at a final concentration of 1 nM. At each time point 200 μl of reaction mix is removed the incubation is terminated by filtration. The remaining quantity of each specific ligand (see table) is determined by UHPLC-MS/MS.
[0172] Non-specific binding is determined by the co-incubation of a mix of specific inhibitors (see table) each at a final concentration of 10 μM.
Mass Binding Dissociation Assays—Displacement
[0173] Membrane aliquots containing 22.5 μg/100 μl of each membrane protein mix a incubated in a total volume of 2000 μl of assay buffer at 22° C. with a mixture of specific ligands (see Table 15) each at a final concentration of 1 nM. The reaction is allowed to reach equilibrium for 60 minutes before starting the dissociation via the addition of a mixture of specific inhibitors (see table) each at a final concentration of 10 μM. Dissociation is stopped at defined time intervals (1 to 80 minutes) via the filtration of 200 μl of the reaction mix. Samples for each time point are prepared in duplicate. The remaining quantity of each specific ligand was determined by UHPLC-MS/MS.
Mass Binding Dissociation Assays—Dilution Method
[0174] For the determination of the K.sub.off constant by dilution 112.5 μg/100 μl of each membrane protein mix are incubated with a mixture of specific ligands (see table) each at a final concentration of 1 nM and incubated at 22° C. for 60 minutes. An aliquot of 22 μl was removed and added to 2178 μl of assay buffer resulting in a 1:100 dilution. Dissociation is stopped by filtration after defined time intervals (1 to 80 minutes). Samples for each time point are prepared in duplicate. The remaining quantity of each specific ligand is determined by UHPLC-MS/MS.
CONCLUSION
[0175] The above specific description is meant to exemplify and illustrate the invention and should not be seen as limiting the scope of the invention, which is defined by the literal and equivalent scope of the appended claims. Any patents or publications mentioned in this specification are intended to convey details of methods and materials useful in carrying out certain aspects of the invention which may not be explicitly set out but which would be understood by workers in the field. Such patents or publications are hereby incorporated by reference to the same extent as if each was specifically and individually incorporated by reference and contained herein, as needed for the purpose of describing and enabling the method or material referred to.
[0176] The preceding merely illustrates the principles of the present disclosure. It will be appreciated that those skilled in the art will be able to devise various arrangements which, although not explicitly described or shown herein, embody the principles of the invention and are included within its spirit and scope. Furthermore, all examples and conditional language recited herein are principally intended to aid the reader in understanding the principles of the invention and the concepts contributed by the inventors to furthering the art, and are to be construed as being without limitation to such specifically recited examples and conditions. Moreover, all statements herein reciting principles, aspects, and embodiments of the invention as well as specific examples thereof, are intended to encompass both structural and functional equivalents thereof. Additionally, it is intended that such equivalents include both currently known equivalents and equivalents developed in the future, i.e., any elements developed that perform the same function, regardless of structure. The scope of the present invention, therefore, is not intended to be limited to the exemplary embodiments shown and described herein.