Anti-SIRPa antibodies and their therapeutic applications
11279766 · 2022-03-22
Assignee
Inventors
- Nicolas Poirier (Treillières, FR)
- Caroline Mary (Sainte-Pazanne, FR)
- Bernard Vanhove (Rezé, FR)
- VANESSA GAUTTIER (REZÉ, FR)
- Virginie THEPENIER (Port-Saint-Père, FR)
- Sabrina PENGAM (Nantes, FR)
Cpc classification
C12N5/00
CHEMISTRY; METALLURGY
A61K2039/507
HUMAN NECESSITIES
C07K2317/24
CHEMISTRY; METALLURGY
G01N2333/70596
PHYSICS
C07K2317/76
CHEMISTRY; METALLURGY
C07K2317/34
CHEMISTRY; METALLURGY
C07K16/2896
CHEMISTRY; METALLURGY
C07K2317/80
CHEMISTRY; METALLURGY
C07K2317/92
CHEMISTRY; METALLURGY
C07K16/2878
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
C07K16/00
CHEMISTRY; METALLURGY
A61K39/00
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
Abstract
The present invention provides new anti-SIRPa antibodies able to specifically antagonize the interaction between SIRPa and CD47, without affecting the interaction between SIRPg and CD47, and their uses.
Claims
1. An anti-human Signal regulatory protein alpha (SIRPa) antibody or antigen-binding fragment thereof, which comprises: a) a heavy chain variable domain comprising HCDR1, HCDR2 and HCDR3, and b) a light chain variable domain comprising LCDR1, LCDR2 and LCDR3, wherein: HCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 14, HCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 15 or SEQ ID NO: 16, and HCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 17 SEQ ID NO: 18, SEQ ID NO: 19, or SEQ ID NO: 20, and wherein: LCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 21, LCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 22, and LCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 23.
2. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1 which does not specifically bind to human SIRPg.
3. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which comprises: a heavy chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29 and SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 31, SEQ ID NO: 32 and SEQ ID NO: 33.
4. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29 and SEQ ID NO: 30.
5. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 29 and SEQ ID NO: 30.
6. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30.
7. The anti-human SIRPa antibody according to claim 6, wherein the antibody is a full-length antibody.
8. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which comprises: a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 24, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 31, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 25, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 25, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 26, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 26, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 29, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 29, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33.
9. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, which is a humanized monoclonal antibody or antigen-binding fragment thereof.
10. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 9, wherein the antibody light chain constant domain is derived from human kappa light chain constant domain or comprises the sequence of SEQ ID NO: 35.
11. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 9, wherein the antibody heavy chain constant domain is derived from a human IgG1, IgG2, IgG3, or IgG4 heavy chain constant domain or comprises the sequence of SEQ ID NO: 34.
12. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, wherein said antibody or fragment does not inhibit the binding of human CD47 to human SIRPg.
13. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, wherein said antibody or fragment does not specifically bind to human T-cells or to CD3+ T-cells.
14. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, wherein said antibody or fragment does not inhibit the proliferation of human T-cells.
15. The anti-human SIRPa antibody or antigen-binding fragment thereof according to claim 1, wherein the antibody or antigen-binding fragment thereof is an antagonist of SIRPa and inhibits the binding of human SIRPa to human CD47.
16. A pharmaceutical composition comprising at least one anti-human SIRPa antibody or antigen-binding fragment thereof of claim 1, and a pharmaceutically acceptable carrier.
17. The pharmaceutical composition of claim 16, wherein said composition further comprises at least one second therapeutic agent selected from the group consisting of chemotherapeutic agents, radiotherapy agents, immunotherapeutic agents, cell therapy agents, antibiotics and probiotics.
18. The pharmaceutical composition of claim 17, wherein the immunotherapeutic agent is a checkpoint blocker or activator of adaptive immune cells selected from the group consisting of an anti-PDL1, anti-PD1, anti-CTLA4, anti-CD137, anti-CD2, anti-CD28, anti-CD40, anti-HVEM, anti-BTLA, anti-CD160, anti-TIGIT, anti-TIM-1/3, anti-LAG-3, anti-2B4, anti-OX40, anti-CD40 agonist, CD40-L, TLR agonists, anti-ICOS, ICOS-L, and a B-cell receptor agonist.
19. The anti-human SIRPa antibody according to claim 1, wherein the antibody is a recombinant antibody.
20. An anti-human Signal regulatory protein alpha (SIRPa) antibody, which comprises: a) a heavy chain variable domain comprising HCDR1, HCDR2 and HCDR3, and b) a light chain variable domain comprising LCDR1, LCDR2 and LCDR3, wherein: HCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 14, HCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 15 or SEQ ID NO: 16, and HCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 17 SEQ ID NO: 18, SEQ ID NO: 19, or SEQ ID NO: 20, and wherein: LCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 21, LCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 22, and LCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 23.
21. The anti-human SIRPa antibody according to claim 20, which comprises: a heavy chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 24, SEQ ID NO: 25, SEQ ID NO: 26, SEQ ID NO: 27, SEQ ID NO: 28, SEQ ID NO: 29 and SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence selected from the group consisting of SEQ ID NO: 31, SEQ ID NO: 32 and SEQ ID NO: 33.
22. The anti-human SIRPa antibody according to claim 20, which comprises: a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 24, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 31, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 25, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 25, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 26, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 26, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 29, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 29, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, or a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30, and a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33.
23. The anti-human SIRPa antibody according to claim 20, which is a humanized monoclonal antibody or antigen-binding fragment thereof.
24. The anti-human SIRPa antibody according to claim 23, wherein the antibody light chain constant domain is derived from human kappa light chain constant domain or comprises the sequence of SEQ ID NO: 35.
25. The anti-human SIRPa antibody according to claim 23, wherein the antibody heavy chain constant domain is derived from a human IgG1, IgG2, IgG3, or IgG4 heavy chain constant domain or comprises the sequence of SEQ ID NO: 34.
26. A pharmaceutical composition comprising at least one anti-human SIRPa antibody of claim 20, and a pharmaceutically acceptable carrier.
27. The pharmaceutical composition of claim 26, wherein said composition further comprises at least one second therapeutic agent comprising an immunotherapeutic agent, wherein the immunotherapeutic agent is a checkpoint blocker or activator of adaptive immune cells selected from the group consisting of an anti-PDL1, anti-PD1, anti-CTLA4, anti-CD137, anti-CD2, anti-CD28, anti-CD40, anti-HVEM, anti-BTLA, anti-CD160, anti-TIGIT, anti-TIM-1/3, anti-LAG-3, anti-2B4, anti-OX40, anti-CD40 agonist, CD40-L, TLR agonists, anti-ICOS, ICOS-L, and a B-cell receptor agonist.
28. The anti-human SIRPa antibody according to claim 20, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32 and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30.
29. The anti-human SIRPa antibody according to claim 20, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27.
30. The anti-human SIRPa antibody according to claim 20, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 27.
31. The anti-human SIRPa antibody according to claim 20, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 32, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28.
32. The anti-human SIRPa antibody according to claim 20, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 28.
33. The anti-human SIRPa antibody according to claim 20 which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 42, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 44.
34. The anti-human SIRPa antibody according to claim 20 which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 39, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 44.
35. The anti-human SIRPa antibody according to claim 20 which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 39, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 45.
36. The anti-human SIRPa antibody according to claim 20 which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 40, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 44.
37. The anti-human SIRPa antibody according to claim 20 which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 40, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 45.
38. An anti-human SIRPa antibody, which comprises: a light chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 33, and a heavy chain variable domain comprising the amino acid sequence set forth in SEQ ID NO: 30.
39. The anti-human SIRPa antibody according to claim 38, wherein the antibody is a monoclonal antibody.
40. The anti-human SIRPa antibody according to claim 38, wherein the antibody is a humanized antibody.
41. The anti-human SIRPa antibody according to claim 38, wherein the antibody is a recombinant antibody.
42. The anti-human SIRPa antibody according to claim 38, wherein the antibody is a chimeric antibody.
43. The anti-human SIRPa antibody according to claim 38, wherein the antibody heavy chain constant domain is derived from a human IgG1, IgG2, IgG3, or IgG4 heavy chain constant domain and the antibody light chain constant domain is derived from a human kappa light chain constant domain.
44. The anti-human SIRPa antibody according to claim 38, wherein the antibody heavy chain constant domain comprises the sequence of SEQ ID NO: 34.
45. The anti-human SIRPa antibody according to claim 38, wherein and the antibody light chain constant domain comprises the sequence of SEQ ID NO: 35.
46. An anti-human Signal regulatory protein alpha SIRPa antibody which comprises a heavy chain comprising the amino acid sequence set forth in SEQ ID NO: 42, and a light chain comprising the amino acid sequence set forth in SEQ ID NO: 45.
47. An anti-human Signal regulatory protein alpha (SIRPa) antibody, which comprises: a) a heavy chain variable domain comprising HCDR1, HCDR2 and HCDR3, and b) a light chain variable domain comprising LCDR1, LCDR2 and LCDR3,wherein: HCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 14, HCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 16, and HCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 20, and wherein: LCDR1 comprises the amino acid sequence set forth in SEQ ID NO: 21, LCDR2 comprises the amino acid sequence set forth in SEQ ID NO: 22, and LCDR3 comprises the amino acid sequence set forth in SEQ ID NO: 23.
Description
FIGURE LEGENDS
(1)
(2) Assessment by ELISA on immobilized SIRPa-His of chimeric (.diamond-solid.), HALA (□), HFLA (*), HFLB (+), HEFLA (.box-tangle-solidup.), HEFLB (.square-solid.), SIRP29 (Δ), Kwar23 (o) on FIG. A; of HCLA (.circle-solid.), HCLB (×), HELA (⋄), HELB (−) on FIG. B; of HALB (−), HBLA (_), HBLB () on FIG. C. Revelation was performed with a donkey anti-human antibody and revealed by colorimetry at 450 nm using TMB substrate. ED50 is the concentration of the indicated antibody to reach 50% of the signal in this assay. Binding of m18D5 clone (.square-solid.) (n=4), SE5A5 commercial clone (.box-tangle-solidup.) (n=7), 6G10 clone (∇) (n=3) and 12D7 clone (□) (n=4) on FIG. D.
(3)
(4) SIRPa-His recombinant protein was immobilized onto a CM5 chip at 5 μg/ml (500 RU) and the indicated antibodies were added at different concentration. Values were measured after an association period (ka) of 3 min followed by a dissociation period of 10 min (kd) to determine affinity constant (KD).
(5)
(6) (A, B) Assessment by cytofluorometry on human monocytes v1/v1 (previously stained with human Fc Receptor Binding Inhibitor antibody) of chimeric (.diamond-solid.), HALA (□), HFLA (*), HFLB (+), HEFLA (.box-tangle-solidup.), HEFLB (.square-solid.), SIRP29 (Δ), Kwar23 (o). Revelation was performed with a PE labeled mouse anti-human Fc mAb on Cantoll cytometer, values corresponding to percentage of stained monocytes. ED50 is the concentration of the indicated antibody to reach 50% of the signal in this assay. FIG. A corresponds to the percentage of monocytes v1/v1 stained. FIG. B corresponds to the mean of fluorescence intensity (MFI) of monocytes v1/v1.
(7) (C, D) Binding study of SIRPa antibodies on human monocytes by Flow cytometry (FACS): different anti-SIRPa antibodies were tested: m18D5 (.square-solid.) (n=1), SE7C2 (.box-tangle-solidup.) (n=2), 12D7 (□) (n=2), 6G10 (.diamond-solid.) (n=4): FIG. C represents the Mean Fluorescence Intensity (MFI) of the different antibodies over a dose response. FIG. D represents the percentage of stained monocytes over antibody dose response. Statistical analysis were performed when it was possible.
(8) (E, F, G) SIRPa variants binding in the population by anti-h SIRPa antibodies: The capacity of different anti-hSIRPa antibodies to bind SIRPa variants in the 32 volunteers was measured by FACS with a PE-anti mouse IgG. All clones were tested at 10 μg/ml: m18D5 (.square-solid.), 12D7 (.Math.), 6G10 (.diamond-solid.) and commercial antibodies SE5A5 (□), SE7C2 (Δ). FIG. E represents the homozygote Variant 1 volunteers (n=16). FIG. F represents the homozygote variant 2 volunteers (n=8). FIG. G represents the heterozygote V1/V2 volunteers (n=8).
(9)
(10) (A) Assessment by ELISA on immobilized SIRPa-His of chimeric (.diamond-solid.), HFLA (*), HFLB (+), HEFLA (.box-tangle-solidup.), HEFLB (.square-solid.), SIRP29 (Δ), Kwar23 (o) at different concentrations incubated with constant concentration of biotinylated CD47-Fc (6 μg/ml). Revelation was performed with streptavidin peroxidase to detect CD47 molecule and revealed by colorimetry at 450 nm using TMB substrate. The results of a second experiment are given with the IC50 values. IC50 is the concentration of the indicated antibody to inhibit 50% of the signal in this assay.
(11) (B) Antagonist activity study of anti-SIRPa antibodies on SIRPa-CD47 interaction by ELISA: The different anti-SIRPa antibodies were tested over a dose response: m18D5 clone (.square-solid.) (n=1), commercial antibody SE5A5 (.box-tangle-solidup.) (n=2) and m12D7 (□) (n=2). The figure represents the percentage of CD47 positive SIRPa-CD47 interactions measured by ELISA during a dose response of anti-hSIRPa antibodies.
(12)
(13) (A, B) Assessment by cytometry on human monocytes (v1/v1) of chimeric (.diamond-solid.), HFLA (*), HFLB (+), HEFLA (.box-tangle-solidup.), HEFLB (.square-solid.) at different concentrations incubated with constant concentration of biotinylated CD47-Fc (10 μg/ml). Revelation was performed with PhycoErythrin-streptavidin to detect CD47 molecule and revealed by Cantoll cytometer. IC50 is the concentration of the indicated antibody to inhibit 50% of the signal in this assay. FIG. A corresponds to the percentage of positive cells. FIG. B corresponds to the mean of fluorescence intensity.
(14) (C) Antagonist activity study of anti-SIRPa antibodies on Sirpa-CD47 interaction by FACS: The different anti-SIRPa antibodies were tested over a dose response: m18D5 clone (.square-solid.) (n=1), commercial antibody SE7C2 (.box-tangle-solidup.) (n=2) and m12D7 (□) (n=2). FIG. C represents the percentage of CD47 positive cells measured by FACS after competition with anti-hSIRPa antibodies.
(15)
(16)
(17) SIRPb-His recombinant protein was immobilized onto a NINTA biosensor and the indicated antibodies were added at 20 μg/ml. Values were deduced after an association period (ka) of 120 sec followed by a dissociation period of 120 sec (kd) to determine affinity constant (KD). (B) Binding analysis of anti-SIRP antibodies (human SIRPb-His coating and anti-human kappa detection). Assessment by ELISA on immobilized SIRPb-His of HEFLB (.square-solid.), SIRP29 (Δ), Kwar23 (o), B4B6 (.diamond-solid.) and IgG4 Ab control () Revelation was performed with a donkey anti-human antibody with the exception of B4B6 revealed with a mouse antibody and revealed by colorimetry at 450 nm using TMB substrate.
(18)
(19) SIRPg-His recombinant protein was immobilized onto a NINTA biosensor and the indicated antibodies were added at 10 μg/ml. Values were deduced after an association period (ka) of 120 sec followed by a dissociation period of 120 sec (kd) to determine affinity constant (KD). (B) Binding analysis by ELISA assay of anti-SIRP antibodies on SIRPg (human SIRPg-His coating and anti-human kappa detection). Assessment by ELISA on immobilized SIRPg-His of HEFLB (.square-solid.), SIRP29 (Δ), Kwar23 (o), LSB2-20 (.circle-solid.) and IgG4 Ab control (). Revelation was performed with a donkey anti-human antibody and revealed by colorimetry at 450 nm using TMB substrate.
(20)
(21)
(22)
(23)
(24)
(25)
(26)
(27)
(28)
(29)
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(32)
EXAMPLES
(33) In the following Examples, the antibody “18D5” (or “m18D5”) corresponds to the mouse antibody 18D5, the “chimeric” antibody corresponds to the chimeric mouse/human 18D5 antibody, and the antibodies “HALA, HALB, HBLA, HBLB, HCLA, HCLB, HELA, HELB, HFLA, HFLB, HEFLA and HEFLB” correspond to specific humanized 18D5 variants. The antibodies 6G10 and 12D7 belong to the Applicant; these antibodies have been obtained by the same method than m18D5 and are used as control. These control antibodies are IgG2a mouse monoclonal anti-human SIRPa antibodies.
(34) In addition, commercial antibodies were used for comparison. The first one is an anti-SIRPa antibody, named SE7C2 (Santa Cruz sc-23863); the second antibody is an antibody able to recognize both SIRP α/β and is named SE5A5 (BioLegend BLE323802); and the third one is an anti-human SIRPa antibody named Kwar23 (Creative Biolabs). An anti-human SIRPa antibody named SIRP29 from University of Toronto described in the PCT application WO2013056352 was also used for comparison.
Example 1
Binding Analyses of the Anti-SIRPa Antibodies on SIRPa by ELISA
(35) Method: The binding activity of the anti-SIRPa antibodies was assessed by ELISA. For the ELISA assay with the chimeric antibody, the humanized antibodies, SIRP29 and Kwar23, a recombinant hSIRPa (Sino Biologicals, Beijing, China; reference 11612-H08H) was immobilized on plastic at 0.5 μg/ml in carbonate buffer (pH9.2) and the purified antibody was added to measure binding. After incubation and washing, peroxidase-labeled donkey anti-human IgG (Jackson Immunoresearch; USA; reference 709-035-149) was added and revealed by conventional methods.
(36) For the ELISA assay with the mouse antibodies, a recombinant hSIRPa (Sino Biologicals, Beijing, China; reference 10975-H08H) was immobilized on plastic at 0.5 μg/ml in carbonate buffer (pH9.2) and the purified antibody was added to measure binding. After incubation and washing, peroxidase-labeled goat anti-mouse Fc chain (Jackson Immunoresearch; reference 115-036-071) was added and revealed by conventional methods.
(37) Results: As shown in
(38) As shown in
Example 2
Biosensor Affinity Measurement of the Anti-SIRPa Antibodies for SIRPa
(39) Method: Recombinant hSIRPa (Sino Biologicals, Beijing, China; reference 11612-H08H) was immobilized into a CM5 sensor chip (GeHealthcare; France) at 5 μg/ml (500 RU) and antibodies were applied at different concentrations with a flow rate of 40 μl/min. Analysis was performed with a BIAcore 3000 (Biacore, GeHealthcare). Values were measured after an association period (ka) of 3 min followed by a dissociation period of 10 min (kd) to determine affinity constant (KD).
(40) Results: As shown in
Example 3
SIRPa Binding Assay on Human Monocytes by Cytofluorometry
(41) Method: To measure the binding of the anti-SIRPa antibodies on human monocytes, human Fc Receptor Binding Inhibitor (BD pharmingen; USA; reference 564220) was first added for 30 min at room-temperature to block human Fc receptors on human monocytes to reduce background. Then, an antibody was incubated for 30 min at 4° C., and washed before stained 30 min at 4° C. with PE-labelled anti-human IgG Fc (Biolegend; USA; reference 409303). For the mouse antibodies, a PE-labelled anti-mouse IgG (Jackson Immunoresearch; reference 715-116-151) was used. Samples were analyzed on BD LSRII or Canto II cytofluorometer.
(42) Results: As shown in
Example 4
Competitive Analysis Between CD47 and the Anti-SIRPa Antibodies by Antagonist ELISA Assay
(43) Method: For competitive ELISA assay, recombinant hSIRPa (Sino Biologicals, Beijing, China; reference 11612-H08H) was immobilized on plastic at 0.5 μg/ml in carbonate buffer (pH9.2). For the chimeric antibody, the humanized antibodies, SIRP29 and Kwar23, a purified antibody (at different concentrations) was mixed with 6 μg/ml final (fix concentration) of biotinylated Human CD47Fc (AcroBiosystems interchim; France; reference: #CD7-H82F6) to measure competitive binding for 2 h at 37° C. After incubation and washing, peroxidase-labeled streptavidin (Vector laboratoring; USA; reference SA-5004) was added to detect Biotin-CD47Fc binding and revealed by conventional methods.
(44) For the mouse antibodies, a purified antibody (at different concentrations) was mixed with 0.04 μg/ml of CD47Fc (Sino Biologicals, Beijing, China; reference 12283-H02H) to measure competitive binding for 2 h at 37° C. After incubation and washing, peroxidase-labeled donkey anti-human Fc chain (Jackson Immunoresearch; reference 709-035-149) was added to detect CD47Fc binding and revealed by conventional methods.
(45) Results: As shown in
Example 5
Competitive Analysis Between CD47 and the Humanized Anti-SIRPa Antibodies on Human Monocytes by Antagonist Cytofluorometry Assay
(46) Method: To measure the competition between CD47 and the humanized anti-SIRPa antibodies on human monocytes, a purified antibody was added on monocytes for 15 min at 4° C., then mixed with 5 μg/ml final of biotinylated Human CD47Fc (AcroBiosystems interchim; France; reference: #CD7-H82F6) and incubated for 30 min at 4° C. to measure competitive binding antibody. After incubation and washing, PE-labelled streptavidin (BDBiosciences; USA; reference 554061) was added for 15 min at 4° C. to detect Biotin-CD47Fc binding and analyzed on BD LSRII or Canto II cytofluorometer.
(47) To measure the competition between CD47 and the mouse anti-hSIRPa antibodies on human monocytes, a purified antibody was added on monocytes for 15 min at 4° C., then mixed with 5 μg/ml final of CD47Fc (Sino Biologicals, Beijing, China; reference 12283-H02H) and incubated for 15 min at 4° C. to measure competitive binding antibody. After incubation and washing, FITC-labelled anti-human Fc (Beckman Coulter; reference IM1627) was added for 15 min at 4° C. to detect CD47Fc binding and analyzed on BD LSRII or Canto II cytofluorometer.
(48) Results: As shown in
Example 6
Blitz Method Competition with SP-D
(49) Method: This method was performed with a Blitz (Forte Bio; USA; reference C22-2 No 61010-1).
(50) Condition A: SIRPa+Anti-SIRPa antibody+Surfactant Protein D (SP-D). In a first step, SIRPa (His) recombinant protein (Sino Biologicals, Beijing, China; reference 11612-H08H) was immobilized at 10 μg/ml by histidine tail into a Ni-NTA biosensor (Forte Bio; USA; reference 18-0029) for 30 seconds. In a second step, anti-SIRPa antibodies were added at 20 μg/mL (saturating concentration) for 120 seconds. Then, human SP-D (R et D Systems; USA; reference 1920-SP-050) was associated at 100 μg/mL, in competition with anti-SIRPa antibodies, for 120 seconds. The dissociation of SP-D was made in kinetics buffer for 120 seconds. Analysis of data was made with the Blitz pro 1.2 software, which calculated association constant (ka) and dissociation constant (kd) and determined the affinity constant KD (ka/kd).
(51) Condition B: SIRPa+Surfactant Protein D (SP-D)+Anti-SIRPa antibody. In a first step, Sirp-a (His) recombinant protein (Sino Biologicals, Beijing, China; reference 11612-H08H) was immobilized at 10 μg/ml by histidine tail into a Ni-NTA biosensor (Forte Bio; USA; reference 18-0029) for 30 seconds. In a second step, human SP-D (R et D Systems; USA; reference 1920-SP-050) was added at 100 μg/mL for 120 seconds. Then, anti-SIRPa antibodies were associated at 20 μg/mL (saturating concentration) for 120 seconds. The dissociation of anti-SIRPa antibody was made in kinetics buffer for 120 seconds. Analysis data was made with the Blitz pro 1.2 software, which calculated association constant (ka) and dissociation constant (kd) and determined the affinity constant KD (ka/kd).
(52) Results: As shown in
Example 7
Affinity of the Anti-SIRPa Antibodies for SIRPb by Blitz Method
(53) Method: This method was performed with a Blitz (Forte Bio; USA; reference C22-2 No 61010-1). Recombinant hSIRPb-His (Antibodies-online; USA; reference ABIN3077231) was immobilized at 10 μg/ml by histidine tail into a Ni-NTA biosensor (Forte Bio; USA; reference 18-0029) for 30 seconds. Then, an anti-SIRPa antibody was associated at 20 μg/mL for 120 seconds. The dissociation of anti-SIRPa antibody was made in kinetics buffer for 120 seconds. Analysis of data was made with the Blitz pro 1.2 software, which calculated association constant (ka) and dissociation constant (kd) and determined the affinity constant KD (ka/kd).
(54) Results: As shown in
Example 8
ELISA Binding of Anti-SIRP Antibodies on SIRPb
(55) Method: For activity ELISA assay, recombinant hSIRPb-His (Antibodies-online; USA; reference ABIN1466557) was immobilized on plastic at 1 μg/ml in carbonate buffer (pH9.2) and a purified antibody was added to measure binding. After incubation and washing, peroxidase-labeled donkey anti-human IgG (Jackson Immunoresearch; USA; reference 709-035-149) was added and revealed by conventional methods.
(56) Results: As shown in
Example 9
Affinity Analysis of the Anti-SIRPa Antibodies for SIRPg by Blitz Method
(57) Method: This method was performed with a Blitz (Forte Bio; USA; reference C22-2 No 61010-1). Recombinant hSIRPg-His (Sino Biologicals, Beijing, China; reference 11828-H08H) was immobilized at 10 μg/ml by histidine tail into a Ni-NTA biosensor (Forte Bio; USA; reference 18-0029) for 30 seconds. Then, an anti-SIRPa antibody was associated at 20 μg/mL for 120 seconds. The dissociation of anti-SIRPa antibody was made in kinetics buffer for 120 seconds. Analysis of data was made with the Blitz pro 1.2 software, which calculated association constant (ka) and dissociation constant (kd) and determined the affinity constant KD (ka/kd).
(58) Results: As shown in
Example 10
ELISA Binding of the Anti-SIRP Antibodies on SIRPg
(59) Method: For activity ELISA assay, hSIRPg-His (Sino Biologicals, Beijing, China; reference 11828-H08H) was immobilized on plastic at 1 μg/ml in carbonate buffer (pH9.2) and purified antibody were added to measure binding. After incubation and washing, peroxidase-labeled donkey anti-human IgG (Jackson Immunoresearch; USA; reference 709-035-149) was added and revealed by conventional methods.
(60) Results: As shown in
Example 11
Blitz Method Competition with CD47 for SIRPg: SIRPg+Anti-SIRPa Antibody+CD47
(61) Method: This method was performed with a Blitz (Forte Bio; USA; reference C22-2 No 61010-1). In a first step, hSIRPg-His (Sino Biologicals, Beijing, China; reference 11828-H08H) was immobilized at 10 μg/ml by histidine tail into a Ni-NTA biosensor (Forte Bio; USA; reference 18-0029) for 30 seconds. In a second step, an anti-SIRPa antibody was added at 20 μg/mL (saturating concentration) for 120 seconds. Then, human CD47Fc ((Sino Biologicals, Beijing, China; reference 12283-H02H) was associated at 100 μg/m L, in competition with anti-SIRPa antibodies, for 120 seconds. The dissociation of CD47Fc was made in kinetics buffer for 120 seconds. Analysis data was made with the Blitz pro 1.2 software, which calculated association constant (ka) and dissociation constant (kd) and determined the affinity constant KD (ka/kd).
(62) Results: As shown in
Example 12
Binding to Blood Cells by Flow Cytometry
(63) Method: The experiment was realized to analyze the binding of the anti-SIRPa antibodies on human blood cells. CD3-positive T lymphocytes, red blood cells and platelets were extracted from purified blood from healthy volunteers. Cells were then stained for 30 min at 4° C. with 10 micrograms/ml of each tested antibody, washed and then stained with a secondary fluorescent anti-IgG antibody for another 30 min at 4° C. After washes, cells were analyzed on a CANTO II (BD Bioscience) flow cytometer.
(64) Results: As shown in
(65) As shown in
Example 13
Human CD3+ T Cell Proliferation
(66) Method: hPBMC were isolated from buffy coat of healthy volunteers. CD4 or CD8 T cells were selected by positive selection using an AutoMACS (Miltenyi) and plated in 96-round well plate (50 000 cells/well). The proliferative signals were provided by either anti-CD3/anti-CD28 coated microbeads (LifeTechnologies) at a 1 bead for 1 T cell ratio during three days, or allogeneic mature dendritic cells generated in vitro at a 5 T cell for 1 mDC during 5 days or with different concentrations of tuberculin unpurified protein derivative (PPD) for 5 days. Antibodies targeting the SIRPa/CD47 pathway were added from the beginning of the proliferation test at a saturating concentration (10 μg/mL). Proliferation was measured by incorporation of H.sup.3-thymidine during the last 12 h of culture.
(67) Results: As shown in
Example 14
Mouse CD8+ T Cell Proliferation
(68) Method: Splenocytes were isolated from naïve mice. CD8 T cells were selected by positive selection using an AutoMACS (Miltenyi) and plated in 96-round well plate (50 000 cells/well). The proliferative signals were provided by anti-CD3/anti-CD28 coated microbeads (LifeTechnologies) at a 1 bead for 1 T cell ratio during three days. A mouse anti-SIRPa antibody (P84) and an anti-CD47 antibody (MIAP310) targeting the SIRPa/CD47 pathway were added from the beginning of the proliferation test at a saturating concentration (10 μg/mL). Proliferation was measured by incorporation of H.sup.3-thymidine during the last 12 h of culture.
(69) Results: As shown in
Example 15
Human T Cell Proliferation
(70) Method: hPBMC were isolated from buffy coat of healthy volunteers. CD4 or CD8 T cells were selected by positive selection using an AutoMACS (Miltenyi) and plated in 96-round well plate (50 000 cells/well). The proliferative signals were provided by either anti-CD3/anti-CD28 coated microbeads (LifeTechnologies) at a 1 bead for 1 T cell ratio during three days, or allogeneic mature dendritic cells generated in vitro at a 5 T cell for 1 mDC during 5 days. Antibodies were added from the beginning of the proliferation test at a saturating concentration (5 μg/mL for anti-CD47 and anti-SIRPa antibodies and 2.5 μg/mL for the anti-PD-1/PD-L1 antibodies and the recombinant 4-1BBL). Proliferation was measured by incorporation of H.sup.3-thymidine during the last 12 h of culture.
(71) Results: As shown in
Example 16
Anti-Tumor Effects in Mice
(72) Method: Mice were anesthetized with a cocktail of xylazine/ketamine. After a laparotomy, tumoral Hepa 1.6 cells were injected through the portal vein (2,5.10.sup.6 cells/100 μL) in PBS. The treatment was started 4 days after tumor injection. The agonistic anti-4-1BB monoclonal antibody (3H3) was injected two times at d4 and d8 after Hepa 1.6 cells (Hepatocarninoma cells, HCC) injection intraperitoneally in PBS (100 μg/injection). The anti-PDL1 monoclonal antibody was injected twice a week during 4 weeks intraperitoneally in PBS (200 μg/injection). The antagonistic anti-SIRPa antibody (P84) was injected three time a week during four weeks intraperitoneally in PBS (300 μg/injection). The anti-tumor response was evaluated in the orthotopic model of HCC thirteen days after the tumor inoculation. At this time, the tumor and the spleen were collected in order to phenotype the immune cells that infiltrated the tumor or in the systemic way. Splenocytes and non-parenchymal cells (NPC) of the liver which are the infiltrating immune cells were stained with four different mixes for flow cytometry acquisition.
(73) Results: As shown in
(74) As shown in
(75) As shown in
(76) Altogether, anti-SIRPa modifies the tumor and peripheral immunity in particular adaptive (T-cell, Tregs, B-cells) and innate (MDSC, Macrophages, NK cells) immune cells contributing to tumor elimination and long-term protection.
Example 17
Anti-Tumor Effects in Mice Previously Cured
(77) Method: Mice previously cured in the hepatoma model by anti-SIRPa+anti-4-1BB injection or SIRPa mutant mice treated with anti-4-1BB were rechallenged by Hepa 1.6 cells injection in the spleen (2.5.10{circumflex over ( )}6 cells/mouse). Mice were anesthetized with 3% of isoflurane in the air. After incision on the flank of the mice and isolation of the spleen, tumoral Hepa 1.6 cells were injected into the spleen (2,5.10.sup.6 cells/50 μL) in PBS. Naïve mice were injected in parallel in the same route in order to compare tumor development with rechallenged mice.
(78) Results: As shown in
Example 18
Anti-Tumor Effects of T-Cell Splenocytes or Whole Splenocytes Collected from Mice Previously Cured
(79) Method: Cured anti-SIRPa+anti-4-1BB rechallenged mice were euthanized and the spleen was collected. After red blood cell lysis, splenocytes were extracted and CD3 positive T cells were isolated from a part of splenocytes with an AutoMACS. After anesthesia, mice were injected with either T-cell splenocytes (2,5.10.sup.6 cells/100 μL) or whole splenocytes (10.10.sup.6 cells/100 μL) or excipient alone (PBS) intravenously. All mice received Hepa 1.6 cells through the portal vein as described previously (2,5.10.sup.6 cells/100 μL).
(80) Results: As shown in
Example 19
Anti-Tumor Effects in Mice Previously Cured
(81) Method: Mice previously cured in the hepatoma model by anti-SIRPa+anti-PDL-1 injection were rechallenged by Hepa 1.6 cells injection in the spleen (2.5.10{circumflex over ( )}6 cells/mouse). Mice were anesthetized with 3% of isoflurane in the air. After incision on the flank of the mice and isolation of the spleen, tumoral Hepa 1.6 cells were injected into the spleen (2,5.10.sup.6 cells/50 μL) in PBS. Naïve mice were injected in parallel in the same route in order to compare tumor development with rechallenged mice.
(82) Results: As shown in
Example 20
Effects of the Growth of a Tumor in a Mammary Carcinoma Model
(83) Method: Mice were anesthetized with 3% of isoflurane in the air. Mice were shaved on the abdomen and 4T1 cells were injected in the mammary gland with an insulinic syringe (30 Gauges) in 50 μL of PBS. The antagonistic anti-SIRPa antibody (P84) or a control antibody was injected three time a week during four weeks intraperitoneally in PBS (200 μg/injection).
(84) Results: As shown in
(85)
Example 21
Effects of SIRPa Antibodies on the Concentration of Hemoglobin and on the Hematocrit
(86) Method: Anti-SIRPa (P84 clone), anti-CD47 (MIAP410 clone) and irrelevant isotype control were administered intraperitoneally at day 0 and day 2 at 12 mg/kg in C57Bl/6 mice. Blood samples were collected at day 0 and day 3 in EDTA containing tubes and blood count was performed with a XS-800i haematology analyzer (Sysmex). The level of hemoglobin (left) and the percentage of hematocrit (right) were evaluated at day 3.
(87) Results: As shown in
Example 22
Platelet Aggregation
(88) Method: Blood was collected from healthy donor volunteers into Vacuette collection tubes (Greiner Bio-One) buffered with sodium citrate. Platelet rich plasma (PRP) and platelet poor plasma (PPP) were obtained by centrifugation for 10 minutes at 200 g and 15 minutes at 3 500 g, respectively. The working PRP was adjusted to 3.10.sup.8 platelets.L.sup.−1. Inhibition Assays: mAb were pre-incubated with PRP for a final concentration of 40 or 50 μg.Math.mL.sup.−1 test antibodies. After 3 minutes without stirring, platelet aggregation was initiated with ADP 5 μM addition. Aggregation was determined by measuring the transmission of light through the sample at 37° C. with continuous stirring using a standard optical aggregometer (TA-8V Thrombo-Aggregometer, SD Innovation SAS, Frouard, France). The transmission of PPP was set as 100%. Aggregation was recorded under stirring for a total of 5 minutes. Induction Assays: Platelet aggregation was directly initiated by mAb addition (50 μg.Math.mL.sup.−1). Aggregation was recorded under stirring for a total of max. 10 minutes.
(89) Results: As shown in
Example 23
Proliferation of Allogeneic T Cells by SIRPa-Blocking CD14+ Cells from a Cancer Ovarian Ascitis
(90) Method: Allogeneic CD4 T cells were isolated by positive selection using an AutoMACS (Miltenyi) from hPBMC of a buffy coat of a healthy volunteer. CD4 were plated in 96-round well plate (50 000 cells/well). CD14+ cells were isolated by the same method from the ascitis of a cancer ovarian patient. The CD14+ cells were plated with the allogeneic CD4 T cells at a 1:1 ratio for 5 days. In some conditions, human LPS-matured allogeneic monocyte-derived dendritic cells (moDC) were added at a 1:5 ratio to stimulate T cells and analyzed the immunosuppressive action of different ratio of CD14+ MDSC purified from the ascite. Antibodies targeting the SIRPa/CD47 pathway were added from the beginning of the proliferation test at a saturating concentration (10 μg/mL). Proliferation was measured by incorporation of H.sup.3-thymidine during the last 12 h of culture.
(91) Results: As shown in
(92) As shown in