Cleavable agents
11834416 · 2023-12-05
Assignee
- Board Of Trustees Of Southern Illinois University (Carbondale, IL)
- Vanderbilt University (Nashville, TN)
Inventors
- Boyd M. Goodson (Carbondale, IL)
- Eduard Y. Chekmenev (Troy, MI, US)
- Bryce E. Kidd (Carbondale, IL, US)
- Jamil A. Mashni (Carbondale, IL, US)
- Miranda Limbach (Creal Springs, IL, US)
- Yuqing Hou (Carbondale, IL, US)
- Fan Shi (Houston, TX, US)
Cpc classification
G01R33/282
PHYSICS
B01J31/12
PERFORMING OPERATIONS; TRANSPORTING
C07F9/6506
CHEMISTRY; METALLURGY
C07D233/60
CHEMISTRY; METALLURGY
C07D241/12
CHEMISTRY; METALLURGY
International classification
C07D233/60
CHEMISTRY; METALLURGY
B01J31/12
PERFORMING OPERATIONS; TRANSPORTING
C07D241/12
CHEMISTRY; METALLURGY
C07D401/06
CHEMISTRY; METALLURGY
C07F9/6506
CHEMISTRY; METALLURGY
Abstract
The present disclosure is directed to a cleavable agent for enhanced magnetic resonance generally corresponding to the formula Y-L-R, wherein Y represents a catalyst-binding moiety having at least one isotopically labeled heteroatom, L represents a cleavable bond, and R represents a hyperpolarized payload having at least one isotopically labeled carbon. Also disclosed herein is a method of cleaving the cleavable agent for enhanced magnetic resonance.
Claims
1. A cleavable agent selected from the group consisting of 1-.sup.13C-.sup.15N.sub.2-acetylimidazole and 1-.sup.13C-.sup.15N.sub.2-pyruvyl-imidazole.
Description
DESCRIPTION OF THE DRAWINGS
(1)
(2)
(3)
(4)
(5)
(6)
(7)
(8)
(9)
(10) Corresponding reference characters indicate corresponding parts throughout the drawings.
DETAILED DESCRIPTION OF THE DISCLOSURE
(11) The present invention is related to cleavable agents having the general formula:
Y-L-R
wherein Y the catalyst binding moiety, L is a cleavable bond, and R is a hyperpolarized payload. In various embodiments, Y can include an isotopically labeled heteroatom, such as an isotopically labeled nitrogen (e.g., .sup.15N), and/or R can include an isotopically labeled carbon (e.g., .sup.13C). For example, in one embodiment, Y includes an isotopically labeled nitrogen (.sup.15N) and R is not isotopically labeled. In another embodiment, Y is not isotopically labeled and R includes an isotopically labeled carbon (.sup.13C). In an alternative embodiment, Y includes an isotopically labeled nitrogen (.sup.15N) and R includes an isotopically labeled carbon (.sup.13C). The cleaving of a cleavable agent according to this structure is depicted in
(12) In various embodiments, the hyperpolarized payload can comprise any payload class known in the art, such as, for example, carboxylic acids and carboxylates (particularly those involved in metabolic cycles, such as the citric acid cycle), urea, amino acids (such as alanine, glutamine, arginine, etc.), molecules involved in lipid metabolism (such as choline and derivatives thereof), neurotransmitters, sugars (such as glucose, fructose, etc.), nucleic acids, drugs, metabolites, and/or other molecules that might bind to or be substrates of enzymes or other proteins or biomacromolecules. Preferably, the hyperpolarized payload comprises a carboxylic acid, carboxylate, or amino acid. For example, the hyperpolarized payload comprises a carboxylic acid or carboxylate thereof. In various embodiments, the hyperpolarized payload comprises an amino acid.
(13) In the above structure, Y binds to a SABRE catalyst. The skilled person will be able to select suitable SABRE catalysts for use with the present invention. Generally, iridium-type catalysts are used, such as, for example, [Ir-IMes; [IrCl(COD)(IMes)], (IMes=1,3-bis(2,4,6-trimethylphenyl), imidazole-2-ylidene; COD=cyclooctadiene)]. This catalyst can be activated by addition of a hydrogen present in the substrate, which causes oxidation of the iridium (to Ir.sup.3+) and the catalyst becomes hexacoordinate (following hydrogenation and loss of the COD group and chloride ion). Iridium catalysts useful in the present invention are generally defined by the NHC (N-heterocyclic carbene) group, e.g., the “IMes” group. As another example, the NHC group can be hydrogenated so that the double bond of the 5-membered ring is hydrogenated to make a “SIMes” group. Alternatively or additionally, the NHC can have different rings, can be functionalized to alter the electronic or steric properties (such as those affecting catalytic activity), and can be functionalized to alter the solubility of the catalyst (such as to make it more water-soluble). The ligand site opposite the NHC group is generally not exchangeable and may be used to tether the catalysts to a support (to make microscale or nanoscale heterogeneous catalysts). However, the NHC group can also be functionalized with known chemistries to tether the catalyst to supports instead of the opposing ligand site.
(14) A number of specific catalyst-binding moieties are amendable to the present disclosure. Two examples of particular embodiments of catalyst-binding moieties include: (A) those using 6-membered nitrogen heterocycles (e.g., pyridine-based rings); and (B) those using 5-membered nitrogen heterocycles (e.g., imidazole-based rings). Structural variants of carboxylic acids can be used, such that activation or cleavage of the bonding moiety results in the production of a carboxylic acid or its corresponding salt. As described above, isotopic labeling with .sup.15N and .sup.13C in the cleavable agents can be used.
(15) In various embodiments, the cleavable agent can correspond in structure to Formula I, Formula II, Formula III, Formula IV, Formula V, Formula VI, Formula VII, Formula VIII, or Formula IX:
(16) ##STR00001## ##STR00002##
wherein:
(17) R.sup.1 is a bond or optionally substituted alkylene;
(18) R.sup.2 is alkylene carboxylate or optionally substituted alkyl;
(19) R.sup.3 is optionally substituted alkyl, alkenyl, heteroaryl, haloalkyl, guanidine, alkylene carboxylate, alkenylene carboxylate, or R.sup.3 corresponds in structure to:
(20) ##STR00003##
and
(21) R.sup.4, R.sup.5, R.sup.6, R.sup.7, and R.sup.8 are independently selected from the group consisting of hydrogen, alkyl, alkenyl, heteroaryl, haloalkyl, guanidine alkylene carboxylate, and alkenylene carboxylate, each of which may be optionally substituted.
(22) For example, R.sup.1 can be an alkylene having from one to three carbon atoms, for example, methylene. Alternatively, R.sup.1 is a bond. R.sup.2 can be optionally methyl or C(O)OH. R.sup.3 can be, for example, methyl, ethenyl, pyridyl, CF.sub.3, guanidine, or acrylic carboxylate.
(23) In the above formulas, at least one nitrogen can be isotopically labeled, e.g., by .sup.15N, and/or at least one carbon on one or more of R.sup.1, R.sup.2, and R.sup.3 can be isotopically labeled, e.g., by .sup.13C. For example, the cleavable agent can include at least one isotopically labeled nitrogen (.sup.15N), such as one, two, three, or four isotopically labeled nitrogen atoms (.sup.15N), the maximum number of which is dependent on how many nitrogen atoms are included in the heteroaryl ring. Similarly, the cleavable agent can include at least one isotopically labeled carbon (.sup.13C), such as one, two, three, four, etc. labeled carbon atoms (.sup.13C), the maximum number of which is dependent on the sum of the number of carbon atoms included in substituents R.sup.1, R.sup.2, and R.sup.3.
(24) As an example, in one embodiment, at least one nitrogen atom is isotopically labeled (.sup.15N) and no carbon atom is isotopically labeled. In an alternative embodiment, at least one carbon atom is isotopically labeled (.sup.13C) and no nitrogen atom is isotopically labeled. In a further embodiment, at least one nitrogen atom is isotopically labeled (.sup.15N) and at least one carbon atom is isotopically labeled (.sup.13C).
(25) Particular examples of compounds according to these structures include:
(26) ##STR00004##
(27) In various embodiments, at least one nitrogen on the above-depicted compounds is isotopically labeled, e.g., by .sup.15N, and/or at least one carbon on the acyclic chain is isotopically labeled, e.g., by .sup.13C.
(28) Method of Synthesizing the Cleavable Agents
(29) A method of synthesizing the cleavable agents of the present disclosure is also described herein. In general, the method requires reacting a carboxylic acid containing the R.sup.2 or R.sup.1 group, e.g.:
(30) ##STR00005##
with a halo(alkoxy)alkyl in order to provide a carbonyl halide containing the R.sup.2 or R.sup.3 group, e.g.:
(31) ##STR00006##
wherein X is a halide (fluorine, chlorine, bromine, or iodine). X is preferably chlorine. In the halo(alkoxy)alkyl, the halo can comprise fluorine, chlorine, bromine, or iodine, and the alkyl can be substituted one, two, three, four, etc. times with halo, the maximum number of which is dependent on the number of available substitution locations on the alkyl group. The alkyl and alkoxy group can independently contain, for example, from 1 to 18 carbon atoms, preferably from 1 to 12 carbon atoms, and more preferably, from 1 to 6 carbon atoms. For example, in some embodiments, halo(alkoxyl)alkyl can comprise dichloro(methoxy)methane. This reaction may be subjected to heating as necessary and can be performed under an inert atmosphere (e.g., an argon atmosphere) for a period of time. For example, the reaction can be performed at or around room temperature, about 30° C., about 40° C., about 50° C., about 60° C., about 70° C., about 80° C., about 90° C., about 100° C., or higher. As an example, the reaction can be performed at about room temperature to about 100° C., at about room temperature to about 80° C., about room temperature to about 60° C., at about room temperature to about 50° C., at about room temperature to about 40° C., or at about room temperature to about 30° C. It will be understood to the skilled person that “room temperature” generally designates a temperature of from about 20 to about 25° C. The reaction can proceed for about 30 minutes to about 2 hours, for example from about 30 minutes to about 90 minutes, or from about 30 minutes to about 60 minutes, as necessary to complete the reaction. Preferably, the reaction takes place in less than two hours.
(32) The carbonyl halide is then reacted with the desired nitrogen-containing heteroaryl group, optionally in a solvent, to provide a cleavable agent as described in detail above. Any suitable solvent known in the art can be used, for example, dichloromethane, triethylamine, acetone, chloroform, cyclohexane, dimethylformamide, toluene, tetrahydrofuran, ethanol, xylene, or a combination thereof. The reaction may be performed at room temperature or can be cooled. The reaction can also be performed under an inert atmosphere (e.g., an argon atmosphere) for a period of time. For example, the reaction can proceed at or around room temperature or can be cooled to about 10° C., about 0° C., about −10° C., or about −20° C. As an example, the reaction can be performed from about 10° C. to about room temperature, from about 0° C. to about room temperature, from about −10° C. to about room temperature, or from about −20° C. to about room temperature. The reaction can proceed for about 1 hour to about 24 hours, for example from about 1 hour to about 18 hours, from about 1 hour to about 12 hours, from about 1 hour to about 6 hours, or from about 1 hour to about 2 hours, as necessary to complete the reaction. Preferably, the reaction takes place in about 24 hours or less.
(33) Method of Hyperpolarizing the Cleavable Agents
(34) Also provided herein is a method of hyperpolarizing the cleavable agents. The methods of the present disclosure use milliTesla and/or microTesla fields.
(35) One method comprises hyperpolarizing the .sup.1H spins of the cleavable agents via conventional (i.e. milliTesla) SABRE. As an example, .sup.1H hyperpolarization of 1-.sup.13C-.sup.15N.sub.2-acetylimidazole is provided in
(36) The method of hyperpolarizing the cleavable agent can comprise hyperpolarizing the cleavable agents with NMR-active heteronuclei by (i) driven magnetization transfer from enhanced .sup.1H spins; or (ii) performing SABRE in microTESLA fields (e.g., by using a magnetic shield). The agent spins can also be hyperpolarized at high field such as inside a magnet. The agent can also be created with a network of heteronuclear spins to better facilitate the transfer of magnetization via the scalar coupling network (e.g., “spin relay”), particularly for nuclei that are more distant from the catalyst binding site.
(37) Method of Cleaving the Cleavable Agent
(38) A method of cleaving the cleavable agent is also provided herein. In one method, the cleavable agent's cleavable bond is cleaved by hydrolysis. Such hydrolysis can be initiated with a strong base. In various embodiments, the cleavage of the cleavable agent produces a carboxylic acid or carboxylic acid derivative and a nitrogen-containing heteroaryl structure, such as an imidazole or a pyridinic alcohol. As described above, at least one nitrogen in the nitrogen-containing heteroaryl is isotopically labeled (.sup.15N) and/or at least one carbon in the carboxylic acid or carboxylic acid derivative is isotopically labeled (.sup.13C).
(39) The method can also comprise hyperpolarizing the cleavable agent via SABRE within a magnetic shield. Magnetization from .sup.15N transfers to .sup.13C spins in the more distant carboxylic acid moiety via a “spin-relay” mechanism at low field. Following hyperpolarization of the cleavable agent, the container for the agent is depressurized and rapid cleavage (e.g., rapid hydrolytic cleavage, rapid aminolytic cleavage, or rapid enzymatic cleavage) of the bond between the heteroaryl and carboxylic acid moieties can be performed with a base. The cleavage/activation procedure can also be performed in a stronger magnetic field at which .sup.15N, .sup.13C, or other participating nuclear spins undergo slower decay of hyperpolarization (e.g., spin-lattice relaxation (T.sub.1) processes), after which the prepared hyperpolarized agent or agents may be transported to the observation field (e.g., the high field of an NMR or MRI magnet) either before or after agent administration to a sample or subject.
(40) Hyperpolarized carboxylic acid derivatives generated via the SABRE approach are shown in the scheme depicted in
Definitions
(41) The term halo or halogen refers to any radical of fluorine, chlorine, bromine or iodine.
(42) Unless otherwise indicated, an alkyl group as described herein alone or as part of another group is an optionally substituted linear saturated monovalent hydrocarbon substituent containing from one to sixty carbon atoms and preferably one to thirty carbon atoms in the main chain or eight to thirty carbon atoms in the main chain, or an optionally substituted branched saturated monovalent hydrocarbon substituent containing from three to sixty carbon atoms, and preferably eight to thirty carbon atoms in the main chain. Examples of unsubstituted alkyl groups include methyl, ethyl, n-propyl, i-propyl, n-butyl, i-butyl, s-butyl, t-butyl, n-pentyl, i-pentyl, s-pentyl, t-pentyl, and the like. The term alkylene refers to an alkyl group having free valencies on two carbon atoms.
(43) The term alkenyl as employed herein by itself or as part of another group is an optionally substituted linear saturated monovalent hydrocarbon substituent containing from two to sixty carbon atoms and preferably two to thirty carbon atoms in the main chain or eight to thirty carbon atoms in the main chain, or an optionally substituted branched saturated monovalent hydrocarbon substituent containing from three to sixty carbon atoms, and preferably eight to thirty carbon atoms in the main chain, and including at least one double bond between two of the carbon atoms in the chain. Examples of unsubstituted alkenyl groups include ethenyl, 1-propenyl, 2-propenyl, 2-methyl-1-propenyl, 1-butenyl, 2-butenyl, and the like. The term alkenylene refers to an alkenyl group having free valencies on two carbon atoms.
(44) Alkoxy groups are generally alkyl groups described above substituted by an oxygen atom.
(45) The term heteroaryl as used herein alone or as part of another group denotes optionally substituted heterocyclic aromatic groups, preferably monocyclic or bicyclic groups containing from 2 to 12 carbons in the ring portion, such as furanyl, thienyl, pyrrolyl, oxazolyl, thiazolyl, imidazolyl, pyrazolyl, isoxazolyl, isothiazolyl, 1,2,3-oxadiazolyl, 1,2,3-triazolyl, 1,3,4-thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, 1,3,5-triazinyl, and the like.
(46) The term “substituted” as in “substituted alkyl,” and the like, means that in the group in question (i.e., the alkyl, aryl or other group that follows the term), at least one hydrogen atom bound to a carbon atom is replaced with one or more substituent groups such as hydroxy (—OH), alkylthio, phosphino, amido (—CON(R.sub.A)(R.sub.B)), wherein R.sub.A and R.sub.B are independently hydrogen, alkyl, or aryl), amino (—N(R.sub.A)(R.sub.B)), wherein R.sub.A and R.sub.B are independently hydrogen, alkyl, or aryl), halo (fluoro, chloro, bromo, or iodo), silyl, nitro (—NO.sub.2), an ether (—OR.sub.A wherein R.sub.A is alkyl or aryl), an ester (—OC(O)R.sub.A wherein R.sub.A is alkyl or aryl), keto (—C(O)R.sub.A wherein R.sub.A is alkyl or aryl), heterocyclo, and the like. When the term “substituted” introduces a list of possible substituted groups, it is intended that the term apply to every member of that group. That is, the phrase “optionally substituted alkyl or aryl” is to be interpreted as “optionally substituted alkyl or optionally substituted aryl.”
(47) Having described the invention in detail, it will be apparent that modifications and variations are possible without departing from the scope of the invention defined in the appended claims.
EXAMPLES
(48) The following non-limiting examples are provided to further illustrate the present invention:
Example 1: Synthesis of 1-.SUP.13.C-.SUP.15.N.SUB.2.-acetylimidazole
(49) 1-.sup.13C-.sup.15N.sub.2-acetylimidazole was synthesized as shown in Scheme 1, below:
(50) ##STR00007##
(51) 1-.sup.13C-Acetic acid (0.890 ml, 15.5 mmol) and α,α-dichloromethyl methyl ether (1.410 ml, 15.5 mmol) were added to a 100-ml R.sub.B flask equipped with a stir bar. The reaction was allowed to proceed from room temperature to 50° C. for 1 h under argon atmosphere. The resulting yellow crude oil was then chilled in an ice bath for several minutes before dropwise addition of .sup.15N.sub.2-imidazole (1.00 g, 14.3 mmol) previously dissolved in dry dichloromethane. A precipitate was immediately formed and the reaction was allowed to stir for an additional 30 min before addition of triethylamine (2.20 ml, 15.5 mmol). The reaction was allowed to stir overnight before addition of diethyl ether (100 ml). The addition of diethyl ether caused precipitation of the triethylamine hydrochloride salt, later to be removed via filtration. The filtrate was then evaporated using a rotovap and solid product was collected. The product was recrystallized three times using a DCM:hexane (50:50) mixture. Pure 1-.sup.13C-.sup.15N.sub.2-acetylimidazole crystals were then dried and collected, yielding 1.37 g (85%).
(52) The experiment was performed with 20 mM methanol-d4 solutions of .sup.15N.sub.2,.sup.13C-acetylimidazole, 1 mM Ir-catalyst precursor [IrCl—(COD)(IMes)] (where IMes=1,3-bis(2,4,6-trimethylphenyl)-imidazol-2-ylidene and COD=cyclooctadiene), and ˜75-85% parahydrogen enrichment (at 75 psi) with a flow rate of 80 sccm provided by a home-built para-H.sub.2 generator. The catalyst is activated via para-H.sub.2 bubbling in the presence of substrate for at least ˜30 mins prior to SABRE hyperpolarization experiments. SABRE-SHEATH mixing fields of 2 μT (.sup.13C) and 1.2 μT (.sup.15N) were used for pre- and post-cleaving experiments, which were performed at room temperature prior to NMR acquisition with a 400 MHz Bruker AVANCE III spectrometer.
Example 2: Synthesis of 1-.SUP.13.C-.SUP.15.N.SUB.2.-pyruvyl-imidazole
(53) 1-.sup.13C-.sup.15N.sub.2-pyruvyl-imidazole was synthesized as shown in Scheme 2, below:
(54) ##STR00008##
(55) 2-oxopropionic acid and α,α-dichloromethyl methyl ether were added to a 100-ml RB flask equipped with a stir bar. The reaction was occurred at 100° C. for 2 h under argon atmosphere. The resulting yellow crude oil was then chilled in an ice bath for several minutes before dropwise addition of .sup.15N.sub.2-imidazole previously dissolved in dichloromethane. A precipitate was immediately formed and the reaction was allowed to stir for an additional 30 min before addition of triethylamine. The reaction was allowed to stir for 24 h before addition of diethyl ether. The addition of diethyl ether caused precipitation of the triethylamine hydrochloride salt, later to be removed via filtration. The filtrate was then evaporated using a rotovap and solid product was collected. The product was recrystallized three times using a DCM:hexane (50:50) mixture. Pure 1-.sup.13C-.sup.15N.sub.2-acetylimidazole crystals were then dried and collected, yielding 1.37 g (85%).
Example 3: Calculation of SABRE Enhancements
(56) .sup.1H SABRE and .sup.13C/.sup.15N SABRE-SHEATH enhancements were calculated using the following equation:
(57)
where ε is the calculated enhancement, S.sub.HP is the absolute integral of the hyperpolarized signal, S.sub.REF is the absolute integral of the signal from a thermally-polarized reference species (here, acquired with a 300 s relaxation delay time), [REF] is the concentration of the reference species, [HP] is the concentration of the hyperpolarized species, A.sub.REF is the cross-sectional area of the NMR tube containing the reference species, and A.sub.HP is the cross-sectional area of the hyperpolarized sample NMR tube (in the present work, A.sub.REF/A.sub.HP=1.12).
(58) When SABRE-SHEATH was attempted with only a partially labeled construct (20 mM 1-.sup.13C-acetylimidazole, without .sup.15N-labeling), minimal polarization transfer to the distant .sup.13C-labeled acetyl moiety was observed (
(59) Heteronuclear hyperpolarization of 1-.sup.13C-.sup.15N.sub.2-acetylimidazole also resulted in .sup.15N enhancements ˜493 for free 1-.sup.13C-.sup.15N.sub.2-acetylimidazole (unbound to the catalyst;
(60) After polarization transfer to .sup.13C and .sup.15N in the μT magnetic shield, the solution was transferred to a 0.3 T storage field, where heteronuclear relaxation times can be relatively long. T1 decay constants were measured by repeating the hyperpolarization cycle with variable delay periods at 0.3 T prior to rapid transfer to 9.4 T for detection. The resulting .sup.13C and .sup.15N T1's were 52±8 s and 149±42 s, respectively, at 0.3 T-indicating sufficient time not only for agent administration, but additional preparation steps as well (as described below).
(61) Following spin-relay of SABRE hyperpolarization to .sup.13C spins of 1-.sup.13C-.sup.15N.sub.2-acetylimidazole, we immediately transferred the solution to 0.3 T, depressurized it to 1 atm, added ˜200 μL of 5.0 M NaOH to hydrolytically cleave the acetyl moiety, and transferred the sample to 9.4 T for detection.
Example 4: Calculations of Signal Enhancements
(62) Table 1 and Table 2 show calculations of .sup.13C signal enhancement for
(63) TABLE-US-00001 TABLE 1 Calculations of .sup.13C signal enhancement for FIG. 8 Fully Labelled .sup.13C-Free S.sub.REF 481900.15 S.sub.HP 17519238.15 [REF] 110 mM [HP] 17 mM ε 263
(64) TABLE-US-00002 TABLE 2 Calculations of .sup.13C and .sup.15N signal enhancements for FIG. 2 Pre-Cleave .sup.13C-Free Pre-Cleave .sup.15N-Free S.sub.REF 481900.15 26677.48 S.sub.HP 17519238.15 1813482.01 [REF] 110 mM 110 mM [HP] 17 mM 17 mM ε 263 493 Post-Cleave .sup.13C-Free Post-Cleave .sup.15N-Free S.sub.REF 481900.15 26677.48 S.sub.HP 9275396.76 664183.75 [REF] 110 mM 110 mM [HP] 17 mM 17 mM (34 mM in .sup.15N) E 139 180
(65) When introducing elements of the present invention or the preferred embodiments(s) thereof, the articles “a”, “an”, “the” and “said” are intended to mean that there are one or more of the elements. The terms “comprising”, “including” and “having” are intended to be inclusive and mean that there may be additional elements other than the listed elements.
(66) In view of the above, it will be seen that the several objects of the invention are achieved and other advantageous results attained.
(67) As various changes could be made in the above compounds and methods without departing from the scope of the invention, it is intended that all matter contained in the above description and shown in the accompanying drawings shall be interpreted as illustrative and not in a limiting sense.