System for Microscopic Examination of an Incubated Sample

Abstract

A system for microscopic examination of a sample has a microscope and an incubation environment conditioning unit connected to the microscope. The microscope has a microscope housing enclosing an illumination optics, a microscope stage and an imaging optics, an integrated sample chamber located within the microscope housing and formed by a separated housing section within the microscope housing. The housing section has a microscope interface for connecting the incubation environment conditioning unit to the sample chamber and/or to a stage top chamber for placing within the sample chamber and for receiving the sample. The system provides a first and a second incubation modes. In the first incubation mode the sample chamber is incubated by supply of a first incubation atmosphere by the incubation environment conditioning unit. In the second incubation mode the stage top chamber is incubated by supply of a second incubation atmosphere by the incubation environment conditioning unit.

Claims

1. A system for microscopic examination of a sample comprising: a microscope and an incubation environment conditioning unit connected to said microscope; the microscope comprising: a microscope housing enclosing an illumination optics, a microscope stage and an imaging optics; an integrated sample chamber located within the microscope housing and formed by a separated housing section within said microscope housing; and the housing section comprising a microscope interface configured for connecting the incubation environment conditioning unit to the sample chamber and/or to a stage top chamber to be placed within the sample chamber and configured to receive the sample; wherein the system provides a first incubation mode and a second incubation mode, wherein in the first incubation mode the sample chamber is incubated by supply of a first incubation atmosphere by the incubation environment conditioning unit, and wherein in the second incubation mode the stage top chamber is incubated by supply of a second incubation atmosphere by said incubation environment conditioning unit.

2. The system of claim 1, wherein the incubation environment conditioning unit comprises: a pump control unit interface for connecting a first pump control unit and/or a second pump control unit; wherein the first pump control unit is configured to supply the first incubation atmosphere having a first group of parameters in the first incubation mode, and wherein the second pump control unit is configured to supply the second incubation atmosphere having a second group of parameters in the second incubation mode.

3. The system of claim 2, wherein the pump control unit interface is configured for connecting the first pump control unit, and for alternatively connecting the second pump control unit after removing the first pump control unit.

4. The system of claim 2, wherein the pump control unit interface is configured for connecting both the first pump control unit and the second pump control unit.

5. The system of claim 2, wherein the microscope comprises a common atmosphere regulation module for controlling the first group of parameters of the first incubation atmosphere in the first incubation mode, and the second group of parameters of the second incubation atmosphere in the second incubation mode.

6. The system of claim 5, wherein the common atmosphere regulation module is configured to communicate with the first pump control unit in the first incubation mode, and with the second pump control unit in the second incubation mode.

7. The system of claim 2, wherein the microscope comprises an atmosphere regulation module interface for connecting a first atmosphere regulation module and/or a second atmosphere regulation module, wherein the first atmosphere regulation module is configured for controlling the first group of parameters of the first incubation atmosphere in the first incubation mode, and wherein the second atmosphere regulation module is configured for controlling the second group of parameters of the second incubation atmosphere in the second incubation mode.

8. The system of claim 7, wherein the atmosphere regulation module interface is configured for connecting the first atmosphere regulation module and for alternatively connecting the second atmosphere regulation module after removing the first atmosphere regulation module.

9. The system of claim 2, wherein the first group of parameters and second group of parameters each comprises at least one of a flow rate and a temperature and contents of H.sub.2O and/or CO.sub.2 and/or N.sub.2 and/or O.sub.2.

10. The system of claim 7, wherein the first atmosphere regulation module comprises sensors for determining the temperature and/or the contents of H.sub.2O and/or CO.sub.2 in the incubated sample chamber.

11. The system of claim 7, wherein the second atmosphere regulation module comprises sensors for determining the temperature and/or the contents of O.sub.2 and/or H.sub.2O and/or CO.sub.2 in the incubated stage top chamber.

12. The system of claim 7, wherein the second atmosphere regulation module further comprises a humidifier for humidifying the second incubation atmosphere.

13. The system of claim further comprising a common water pump configured to supply H.sub.2O to both the first and the second pump control units.

14. The system of claim 1, wherein, in the second incubation mode, the system in configured to use the same temperature control as in the first incubation mode by controlling the temperature in the stage top chamber via the temperature in the sample chamber.

15. The system of claim 1 further comprising a universal software interface for communication with a microscope controller, the microscope controller being configured to control the illumination optics, the microscope stage and the imaging optics of the microscope for controlling the microscopic examination of the sample, and for providing an incubation environment conditioning unit interface for communicating with the incubation environment conditioning unit such that the microscope and the incubation environment conditioning unit can both be controlled by the universal software interface.

16. The system of claim 15, wherein the universal software interface is configured such that the system automatically switches into the first incubation mode if the first pump control unit is connected to the pump control unit interface, and into the second incubation mode if the second pump control unit is connected to the pump control unit interface.

17. The system of claim 1 further comprising a sample holder for holding the sample in the first incubation mode, the sample holder being adapted for attachment of a cover for forming the stage top chamber to be used in the second incubation mode.

18. The system of claim 1, wherein the housing section comprises a lid providing direct access to the microscope stage for placing the sample and/or the stage top chamber in the sample chamber.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0029] FIG. 1 schematically shows a perspective view of an embodiment of a system according to the inventive concept,

[0030] FIGS. 2A, 2B, and 2C schematically show different configurations of embodiments of a system according to the inventive concept, and

[0031] FIG. 3 schematically shows an embodiment of a system overview according to the inventive concept, and

[0032] FIG. 4 schematically shows an embodiment of a stage top chamber used in a system according to the inventive concept.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

[0033] FIG. 1 schematically shows in a perspective view an embodiment of a microscope 100 for microscopic examination of a sample 120 arranged on a microscope stage 116. A microscope housing 102 encloses an illumination optics 118, the microscope stage 116 and an imaging optics 124. An integrated sample chamber 106 is located within the microscope housing 102 and formed by a separated housing section 104 within said microscope housing 102. The housing section 104 comprises a hinged lid 109 which provides direct access to the microscope stage 116 for placing the sample 120 in the sample chamber 106 onto the microscope stage 116 and for exchanging samples 120 and/or manipulating samples 120 when the lid is opened. The embodiment shown in FIG. 1 is an inverse transmitted-light microscope 100 where the transmitted-light illumination optics 118 is arranged within the housing section 104, while the imaging optics is located below the microscope stage 116 in a second housing section 122. The imaging optics 124 typically includes a microscope objective and an image detector as the main components. The image detector usually comprises a camera which generates microscopic images which are typically displayed on a display screen 142 outside the microscope housing 102.

[0034] The construction of the microscope housing section 104 allows—after closing the lid 109—to form a dedicated sample chamber 106 which constitutes a preferably sealed space which can be incubated such that during microscopic examination/imaging of living samples 120 like cells, the sample can be kept under favorable and stress-free environmental conditions. To this end, the housing section 104 comprises an interface 108 for connection of an external incubation environment conditioning unit 110 to the sample chamber 106. The interface 108 is configured to provide a connection between the conditioning unit 110 and the sample chamber 106, such that environmental conditions in the sample chamber 106 can be controlled when the conditioning unit 110 is connected to the interface 108. This configuration implements the first incubation mode (“sample chamber incubation”).

[0035] In the embodiment shown, the interface 108 as a part of the housing section 104 comprises two openings 112 in the backside of the housing section 104, each opening 112 being configured to receive a conduit 114. Incubation atmosphere can be introduced through at least one of the conduits 114 into the sample chamber 106. Depending on the leakage of the sample chamber 106, a part of the incubation atmosphere is allowed to escape the sample chamber 106. On the other hand, a part of the incubation atmosphere can be withdrawn from the sample chamber 106 via another one of the conduits 114.

[0036] Suitable incubation atmospheres comprise air with a predefined content of H.sub.2O (relative humidity) and a predefined content of CO.sub.2 (carbon dioxide). It is also desirable to conduct hypoxia experiments with a deficiency of oxygen in the atmosphere. Typically, the temperature of the incubation atmosphere can be set in a range between ambient temperature of about 20° C. up to 50° C., especially between 25 and 37° C., the CO.sub.2-range is set between 0.5 to 20%, and the O.sub.2-range is set between 1 to 18%. The humidity must be balanced to ensure that potential condensation is avoided or at least does harm neither the microscope 100 nor the conditioning unit 110 nor the sample itself. It is preferred to control at least the temperature, the humidity and the CO.sub.2-content on its own. In hypoxia experiments, the O.sub.2-content is controlled by N.sub.2-input. Such experiments are preferably conducted in the second incubation mode (“stage top chamber incubation”) as will be explained further below.

[0037] In order to control the above parameters, it is preferred to arrange sensors in the conduits 114 and/or in the sample chamber 106 and/or at the microscope stage 116 close to the sample 120. In a preferred embodiment, at least some of the sensors are integrated into a conduit 114 for supplying incubation atmosphere to the sample chamber 106.

[0038] As shown in FIG. 1, the housing section 104 is bounded downward by a working surface 107 including an upper side of the microscope stage, in other words the microscope stage tabletop. This construction provides a user-friendly access to the working area for placing and manipulating the sample 120. To the other sides, the housing section is bounded by the inner sides of the lid 109 and the backside of the housing section 104 itself.

[0039] For increasing the live span of the imaging optics 124 and in case of using immersion objectives, it is preferred to air condition and/or temperature-control the second housing section 122. This can either be done by the same conditioning unit 110 and a correspondingly enlarged interface 108 or, more preferred, by a separate air conditioning unit.

[0040] In a preferred embodiment, the microscope 110 comprises a controlling unit 140 which can be or can include a microscope controller 350 (see FIG. 3) that controls functional components like the illumination optics 118, the microscope stage 116 and the imaging optics 124 of the microscope 100 for controlling the microscopic examination/imaging of the sample 120. Typically, a graphical user interface (GUI) is displayed on the display screen 142 for a user-friendly operation of the microscope 100. The controlling unit 140 is further configured to control the operation of the incubation environment conditioning unit 110 when the conditioning unit 110 is connected to the interface 108. Cables and lines for communication between the microscope controlling unit 140/microscope controller 350 and a conditioning unit controller (not shown) can be guided through one or more of the above openings/conduits of the interface 108. In this case, the same GUI may display corresponding buttons for setting desired values for the incubation atmosphere parameters as mentioned above. After confirmation that the lid 109 is closed and the sample to be examined is placed on the table of the microscope stage 116, generation of the user-defined incubation atmosphere automatically starts and, once the desired atmosphere is established and the sample 120 is in the right position, examination/imaging of the sample is carried out.

[0041] As shown in FIG. 1 the default configuration is the first incubation mode, namely, in this embodiment, the sample chamber incubation mode. As will be described in more detail in connection with the following figures, the incubation environment conditioning unit 110 comprises a pump control unit interface for connecting a first pump control unit 212 which is shown in FIG. 1. Within the housing section 104, at its backside, there is an atmosphere regulation module interface to which a first atmosphere regulation module 216 is connected to as shown in FIG. 1. The above mentioned sensors for detecting one or more of the incubation atmosphere parameters are preferably arranged in the sample chamber 106, particularly in or at the first atmosphere regulation module 216. The first atmosphere regulation module 216 is connected to the incubation environment conditioning unit 110 via a communication line. In that way, depending on the sensor signals which correspond to the parameter values, the first atmosphere regulation module 216 together with the first pump control unit 212 can provide a feedback control to set the first group of parameters of the first incubation atmosphere to a desired setpoint. This process will be further described in connection with the following figures.

[0042] FIG. 2 shows schematically different configurations of embodiments of a system according to the inventive concept. The figures are described collectively, same reference signs depicting the same or at least functionally the same components.

[0043] FIG. 2A corresponds to the configuration as shown in FIG. 1. The microscope 100 is shown on the right side of FIG. 2A, the microscope 100 comprising as its main components the illumination optics 118, the microscope stage 116 and the imaging optics 124, the microscope objective defining an optical axis 126. The sample 120 is placed on the microscope stage 116 within the sample chamber 106 which is formed by the separated housing section 104 within the microscope housing 102 of the microscope 100. The imaging optics, or at least a part of it, is located in a second separated housing section 122. The incubation environment conditioning unit 110 is shown on the left side of FIG. 2A and is connected to the microscope 100 via the interface 108 in the housing section 104 of the microscope 100 and by conduits 114 extending from the conditioning unit 110 into the sample chamber 106.

[0044] The incubation environment conditioning unit 110 comprises a first pump control unit 212 which is connected to the pump control unit interface 210 and which is connected to a mutual/universal software interface 250 and to a common water pump 240. The mutual software interface 250 and the common water pump 240 can also be used in the second incubation mode as explained hereafter. The incubation environment conditioning unit 110 is designed for providing a first incubation atmosphere of a predefined flow rate, a predetermined temperature and with predefined contents of H.sub.2O and CO.sub.2. The temperature control and the power supply of the conditioning unit 110 can also be used in the second incubation mode. The first incubation atmosphere is conducted via the interface 108 into the sample chamber 106. A part of the incubation atmosphere can also be discharged through the interface 108 and the conduits 114 as illustrated by the arrows. Within the sample chamber 106, there is arranged the first atmosphere regulation module 216 which is connected to the atmosphere regulation module interface 220. As already explained above, the first atmosphere regulation module 216 comprises sensors for detecting the temperature, and the contents of CO.sub.2 and H.sub.2O in the incubation atmosphere. Depending on the actual values of these parameters, a feedback control can be implemented by communication of the first atmosphere regulation module 216 with the first pump control unit 212 for setting up the setpoint values of these parameters.

[0045] FIG. 2B shows an embodiment of a system 130 in the second incubation mode. In the following, only the differences to the embodiment shown in FIG. 2A will be explained. As shown in FIG. 2B, a stage top chamber 230 is placed or built within the sample chamber 106, the sample chamber 230 forming a relatively small volume around the sample 120 located within the stage top chamber 230. The first pump control unit 212 is replaced by a second pump control unit 214 which is connected to the same interface 210 shown in FIG. 2A. The second pump control unit 214 shares the same mutual software interface 250 and the same common water pump 240 as the first pump control unit 212. In the embodiment shown in FIG. 2B, a second atmosphere regulation module 218 replaces the first atmosphere regulation module 216 and is connected to the same interface 220 shown in FIG. 2A. In this configuration, the system 130 can be operated in the second incubation mode.

[0046] In the second incubation mode, the incubation environment conditioning unit 110, in this embodiment, generates a second incubation atmosphere of a predefined flow rate, a predetermined temperature and predetermined contents of H.sub.2O, CO.sub.2 and O.sub.2. The second incubation atmosphere is conducted via interface 108 and via the second atmosphere regulation module 218 into the stage top chamber 230. As shown in FIG. 2B, corresponding supply lines are provided. The second atmosphere regulation module 218 comprises sensors for detecting the values of one or more parameters of the second incubation atmosphere, in this embodiment, sensors for detecting the temperature and the contents of CO.sub.2, H.sub.2O and O.sub.2. The temperature sensor can also be located within the stage top chamber 230 to more precisely detect the temperature within the stage top chamber 230. Again, the corresponding sensor signal allow a feedback control in order to supply the second incubation atmosphere with setpoint values of the corresponding parameters to the stage top chamber 230. Typically, hypoxia experiments are conducted in the second incubation mode where only a small volume of the stage top chamber 230 has to be flushed with N.sub.2 as opposed to the large volume of the sample chamber 106 in the first incubation mode.

[0047] As can be seen from FIGS. 2A and 2B, one single system is provided for operation in two different incubation modes without the need to change systems or to convert/rebuild the system in order to switch from one incubation mode to the other.

[0048] FIG. 2C shows another embodiment of a system 130 according to the present inventive concept. Again, same reference signs depict same or at least functionally the same components. Only the differences to FIGS. 2A and 2B are explained in more detail. As can be seen from FIG. 2C, a common atmosphere regulation module 219 is connected to the atmosphere regulation module interface 220. This common atmosphere regulation module 219 is configured for controlling, in the first incubation mode, the first group of parameters of the first incubation atmosphere, and, in the second incubation mode, the second group of parameters of the second incubation atmosphere. It should be noted that this common atmosphere regulation module 219 can also be used in the embodiments according to FIGS. 2A and 2B such that no replacement of first and second atmosphere regulation modules would be necessary in order to switch from one incubation mode into the other.

[0049] The incubation environment conditioning unit 110 comprises a pump control unit interface 220 for connecting both the first and the second pump control units 212, 214 as shown in FIG. 2C. Each of the pump control units 212, 214 is connected to the mutual software interface 250 and to the common water pump 240. The configuration shown in FIG. 2C makes any replacements of pump control units and atmosphere regulation modules obsolete. The system may automatically detect the presence of a stage top chamber 230 within the sample chamber 106 and thus automatically switch into the second incubation mode. Alternatively, a user chooses the first or second incubation mode via a GUI. Concerning the remaining features and advantages of the configuration shown in FIG. 2C, reference is made to the previous explanations in connection with FIGS. 2A and 2B.

[0050] FIG. 3 schematically shows an embodiment of a system overview according to the inventive concept. In FIG. 3, a key is shown in the right corner below explaining the meaning of the symbols. The black elliptical symbol means an external interface, the black triangle means a mutual interface, the rectangle means an internal component, and the rectangle with the hatched frame means a mutual internal component. FIG. 3 shows an embodiment of a fully integrated system 130.

[0051] A universal software interface 250 is configured to control the system 130 in its entirety. To this end, the universal software interface 250 provides an incubation environment conditioning unit interface 360 and is, on the other hand, connected to the microscope controller 350. Thus, all functions and settings of the microscope 100 and of the incubation environment conditioning unit 110 can be controlled through the universal software interface 250 which typically provides a graphical user interface (GUI) which can be operated by a user.

[0052] The incubation environment conditioning unit 110 comprises an interface which is the pump control unit interface 210 shown in FIG. 2. First and/or second pump control units 212, 214 can be connected to this interface. The conditioning unit 110 further comprises a mechanical system interface 301, a main control PCB 302, a heating module 303a and a power supply 303b as mutual internal components. Such components are shared by the first and second incubation modes. Finally, the conditioning unit 110 comprises a power interface 304, a USB interface 305, and the water pump control interface 306 as mutual interfaces.

[0053] The first pump control unit 212 comprises an external interface for H2O-supply, an external interface for CO2-supply, as well as a control PCB 307 and a gas humidifier 308 as internal components. The second pump control unit 214 comprises an external interface for H2O-supply, an external interface for CO2-supply and an external interface for N2-supply and a communication connection to the incubation environment conditioning unit 110 (not shown). Further, as internal components, the second pump control unit 214 comprises a control PCB 307, a gas humidifier 308, and a gas mix module 309. A water pump 240 is connectable to the first and/or second pump control unit 212, 214, and comprises a water reservoir 310 and a water pump 311 as internal components.

[0054] In the embodiment shown in FIG. 3, the two incubation modes can be realized as already explained above in connection with FIGS. 1 and 2. As many components as possible are shared in the two incubation modes. The second pump control unit 214 is provided with means for humidifying the gas mixture in addition and independently from the incubation environment conditioning unit 110.

[0055] As already explained in connection with FIGS. 1 and 2, the incubation environment conditioning unit 110 communicates with the first and second atmosphere regulation modules 216 and 218. The first atmosphere regulation module 216 comprises a gas sensor 312 as an internal component, and an external interface 314 for an ambient temperature sensor. Optionally, an external interface 315 for a sample temperature sensor may be provided. While interface 314 connects to a temperature sensor in the sample chamber 106, interface 315 connects to a temperature sensor near the sample 120 itself. The second atmosphere regulation module 218 comprises a gas sensor 313 as an internal component and the same external interfaces 314 and 315 as module 216. As already mentioned above, it should be noted that in another embodiment the atmosphere regulation modules 216, 218 may comprise temperature sensors, on the one hand, and/or may be connected through corresponding external interfaces to gas sensors located in the sample chamber or in the stage top chamber. The gas sensors 312 and 313 include sensors for detecting the first and second group of parameters of the first and second incubation atmospheres, respectively. In case the external interface 315 of the second atmosphere regulation module 218 is missing, the temperature in the stage top chamber 230 is merely controlled via the temperature in the surrounding sample chamber 106.

[0056] The regulated/readjusted first incubation atmosphere is introduced into sample chamber 106 which comprises an ambient temperature sensor 316 which connects to interface 314 of module 216. On the other hand, a regulated/readjusted second incubation atmosphere is introduced into the stage top chamber 230 which may comprise a sample temperature sensor 317 which would connect to interface 315 of module 218. Alternatively, as explained above, the ambient temperature sensor 316 of sample chamber 106 connects to interface 314 of module 218.

[0057] In another embodiment, the second atmosphere regulation module 218 may comprise an external interface for water supply connected to a gas humidifier as an internal component. In this case, module 218 would be able to additionally and independently regulate/readjust the relative humidity in the second incubation atmosphere. In another alternative embodiment already discussed above, modules 216 and 218 are combined into a common atmosphere regulation module 219 (see FIG. 2C).

[0058] FIG. 4 schematically shows a cross section of an embodiment of a stage top chamber 230 preferably used in a system according to the present inventive concept. Hitherto, in the sample chamber incubation mode, a sample is placed on a sample holder on the microscope stage 116. In order to operate in the second incubation mode, a separate sample holder in the form of a stage top incubator had to be placed onto the microscope stage. The stage top chamber 230 shown in FIG. 4 overcomes this drawback by providing a universal sample holder 410 onto which a sample 120 is placed in both the first and second incubation modes. The universal sample holder 410 is located into or onto the microscope stage 116. A gas connection 430 is flanged at a side of the universal sample holder 410. By attaching a cover 420 to provide a sealed stage top chamber 230, in the second incubation mode, second incubation atmosphere is introduced into the stage top chamber 230 via a pipe connected to the gas connector 430.

LIST OF REFERENCE SIGNS

[0059] 100 microscope [0060] 102 microscope housing [0061] 104 separated housing section [0062] 106 sample chamber [0063] 107 working surface [0064] 108 microscope interface [0065] 109 lid [0066] 110 incubation environment conditioning unit [0067] 112 opening [0068] 114 conduit [0069] 116 microscope stage [0070] 118 illumination optics [0071] 120 sample [0072] 122 second housing section [0073] 124 imaging optics [0074] 126 optical axis [0075] 130 system [0076] 140 controlling unit [0077] 142 display [0078] 210 pump control unit interface [0079] 212 first pump control unit [0080] 214 second pump control unit [0081] 216 first atmosphere regulation module [0082] 218 second atmosphere regulation module [0083] 219 common atmosphere regulation module [0084] 220 atmosphere regulation module interface [0085] 230 stage top chamber [0086] 240 water pump [0087] 250 universal software interface [0088] 301 mechanical system interface [0089] 302 main control PCB [0090] 303a heating module [0091] 303b power supply [0092] 304 power interface [0093] 305 USB interface [0094] 306 pump control interface [0095] 307 control PCB [0096] 308 gas humidifier [0097] 309 gas mix module [0098] 310 water reservoir [0099] 311 water pump [0100] 312 gas sensor [0101] 313 gas sensor [0102] 314 ambient temperature sensor interface [0103] 315 sample temperature sensor interface [0104] 316 ambient temperature sensor [0105] 317 sample temperature sensor [0106] 350 microscope controller [0107] 360 incubation environment conditioning unit interface [0108] 410 universal sample holder [0109] 420 cover [0110] 430 gas connector