Fluorinated pickering emulsion
11135586 · 2021-10-05
Assignee
- The Board Of Trustees Of The Leland Stanford Junior University (Stanford, CA)
- The Governors Of The University Of Alberta (Edmonton, Alberta, CA)
Inventors
- Sindy Tang (Stanford, CA, US)
- Ming Pan (Stanford, CA, US)
- Fengjiao Lyu (Stanford, CA, US)
- Ratmir Derda (Edmonton, CA)
Cpc classification
C12Q1/18
CHEMISTRY; METALLURGY
B82Y40/00
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/165
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/16
PERFORMING OPERATIONS; TRANSPORTING
C01P2004/62
CHEMISTRY; METALLURGY
B01L3/502784
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502769
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0668
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0647
PERFORMING OPERATIONS; TRANSPORTING
C07F7/081
CHEMISTRY; METALLURGY
B82Y30/00
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502761
PERFORMING OPERATIONS; TRANSPORTING
C01P2004/64
CHEMISTRY; METALLURGY
International classification
B01L3/00
PERFORMING OPERATIONS; TRANSPORTING
C12Q1/18
CHEMISTRY; METALLURGY
C01B33/18
CHEMISTRY; METALLURGY
B82Y40/00
PERFORMING OPERATIONS; TRANSPORTING
Abstract
Described here is a composition comprising amphiphilic silica nanoparticles, wherein the silica nanoparticles are partially fluorinated. Also described here is a method for droplet-based assay, comprising dispersing at least one aqueous droplet in a continuous fluorous phase in a microfluidic channel, wherein at least one amphiphilic silica nanoparticle is absorbed to the interface of the continuous fluorous phase and the aqueous droplet, and wherein the silica nanoparticle is partially fluorinated. Further described here is a method for droplet-based assay, comprising dispersing at least one aqueous phase droplet in a continuous fluorous phase in a microfluidic channel, wherein the continuous fluorous phase comprises at least one partially fluorinated amphiphilic particle adsorbed to an interface of the continuous fluorous phase and the aqueous phase droplet, and wherein the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic particle at the interface.
Claims
1. A composition comprising (a) a fluorous phase comprising at least one fluorinated solvent, (b) an aqueous phase, and (c) amphiphilic silica nanoparticles that are partially fluorinated such that the silica nanoparticles comprise fluorinated or partially fluorinated alkyl groups covalently bonded on the surface of the silica nanoparticles, wherein at least 50% of all silica nanoparticles in the composition have a contact angle θ of 90° to 135° at an interface of the fluorous phase and the aqueous phase and is absorbed to the interface of the fluorous phase and the aqueous phase, and wherein the contact angle is measured from the aqueous phase, and wherein the fluorous phase comprises at least one of 2-(trifluoromethyl)-3-ethoxydodecafluorohexane, 1,1,2,2,3,3,4,4,4-Nonafluoro-N,N-bis(1,1,2,2,3,3,4,4,4-nonafluorobutyl)butan-1-amine, 1,1,2,2,3,3,4,4,4-nonafluoro-N-(1,1,2,2,3,3,4,4,4-nonafluorobutyl)-N-(trifluoromethyl)butan-1-amine, perfluorohexane, or perfluoromethyldecalin.
2. The composition of claim 1, wherein the silica nanoparticle is partially derivatized with 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane covalently bonded on the surface.
3. The composition of claim 1, wherein the aqueous phase comprises at least one fluorescent molecule.
4. The composition of claim 1, wherein the aqueous phase comprises at least one cell.
5. The composition of claim 1, wherein the aqueous phase comprises at least one cell anchored to the silica nanoparticle at the interface of the fluorous phase and the aqueous phase.
6. The composition of claim 1, wherein the contact angle θ is 90° to 120°.
7. The composition of claim 1, wherein the contact angle θ is 100° to 110°.
8. The composition of claim 1, wherein the fluorinated or partially fluorinated alkyl groups comprise a partially fluorinated or perfluorinated alkyl-silane covalently bonded on the surface of the silica nanoparticle.
9. The composition of claim 1, wherein the fluorinated or partially fluorinated alkyl groups comprise 10 to 20 carbon atoms per alkyl group.
10. The composition of claim 1, wherein the fluorinated or partially fluorinated alkyl groups are substituted with 10 or more fluorine atoms per alkyl group.
11. The composition of claim 1, wherein at least 70% of all silica nanoparticles in the composition have a contact angle θ of 90° to 135°.
12. The composition of claim 1, wherein at least 90% of all silica nanoparticles in the composition have a contact angle θ of 90° to 135°.
13. The composition of claim 1, wherein the amphiphilic silica nanoparticles have at least one dimension in a range from 10 to 950 nm.
14. An emulsion composition comprising (a) a continuous fluorous phase, (b) at least one aqueous phase droplet dispersed in said continuous fluorous phase, and (c) amphiphilic silica nanoparticles that are partially fluorinated such that the silica nanoparticles comprise fluorinated or partially fluorinated alkyl groups covalently bonded on the surface of the silica nanoparticles, wherein at least 50% of all silica nanoparticles in the emulsion composition have a contact angle θ of 90° to 135° at an interface of the continuous fluorous phase and the aqueous phase droplet and is absorbed to the interface of the continuous fluorous phase and the aqueous phase droplet, and wherein the contact angle is measured from the aqueous phase droplet, and wherein the continuous fluorous phase comprises at least one of 2-(trifluoromethyl)-3-ethoxydodecafluorohexane, 1,1,2,2,3,3,4,4,4-nonafluoro-N,N-bis(1,1,2,2,3,3,4,4,4-nonafluorobutyl)butan-1-amine, 1,1,2,2,3,3,4,4,4-nonafluoro-N-(1,1,2,2,3,3,4,4,4-nonafluorobutyl)-N-(trifluoromethyl)butan-1-amine, perfluorohexane, or perfluoromethyldecalin.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
(33) Fluorinated Pickering Emulsion
(34) Described here are the design, synthesis, and application of amphiphilic silica nanoparticles to stabilize aqueous drops in fluorinated oils for applications in droplet microfluidics. The use of nanoparticles addresses two key limitations of current systems where drops are stabilized by surfactants: 1) the mitigation of undesirable inter-drop molecular transport which has severely compromised the accuracy of droplet assays. As particles are irreversibly adsorbed at the liquid-liquid interface and do not form micelles, one pathway through which molecules could leak is eliminated. 2) The biocompatibility with the growth of bacteria, and importantly the proliferation of adherent mammalian cells by providing a rigid solid-like interface to which cells could adhere and spread. The latter capability is not possible in surfactant-stabilized drops. The particles described herein thus address multiple limitations of surfactants commonly used in current droplet systems, and can allow new applications for high-fidelity assays and for the culture of anchorage dependent cells in droplet microfluidics.
(35) One aspect of some embodiments of the invention described here relate to amphiphilic silica nanoparticles obtained by modifying the surface hydrophobicity of silica nanoparticles using silane chemistry to render the particles amphiphilic (i.e., partially wetted by the aqueous phase and partially wetted by the fluorous phase). The particles are initially dispersed in a continuous phase of fluorinated oils. In the presence of an aqueous phase, the particles adsorb spontaneously to the aqueous-fluorous interface. This approach has four key advantages: 1) The synthesis of silica nanoparticles and the modification of their surface chemistry are less burdensome compared with the synthesis of surfactants. The amphiphilic particles can be optimized to stabilize aqueous drops in multiple fluorinated oils (including HFE-7500, FC-40, and perfluoromethyldecalin (PFMD), whereas existing block copolymer surfactants are not all soluble in perfluorinated oils. 2) As the particles are initially dispersed in the continuous phase, they do not interfere with the reagents inside the aqueous drops. The generation of monodisperse drops can be performed using standard flow-focusing nozzles. 3) Particles are non-toxic to bacteria and mammalian cells. 4) The rigid solid-like interface given by the nanoparticles provides a favorable substrate for the attachment and spreading of adherent cells.
(36) Silica nanoparticles are chosen instead of metallic nanoparticles here as the latter quench fluorescence from fluorophores that could be encapsulated inside the drops. The amphiphilic fluorinated SiO.sub.2 nanoparticles are referred herein as “F—SiO.sub.2 NPs”.
(37) F—SiO.sub.2 NPs were generated from the fluorination of pre-synthesized pristine SiO.sub.2 NPs with diameters ranging from 50 nm to 1 μm. The SiO.sub.2 NPs were either synthesized using Stober method, or purchased and used after centrifugation. The initial size of these SiO.sub.2 NPs determined the final size of the F—SiO.sub.2 NPs as the fluorination process did not change the size of the particles. The SiO.sub.2 NPs were initially hydrophilic and dispersible in the aqueous phase. Particle surface fluorophilicity was increased by reacting the particles with 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) to partially derivatize the silanol groups on the surface of pristine SiO.sub.2 NPs (
(38) To identify particles that could stabilize aqueous drops in various fluorinated oils, the particles were sampled at different times after the fluorination process started. The particles were dispersed in fluorinated oils, and agitated the dispersion with deionized water or Lysogeny Broth (LB), a growth media for bacteria, to form water-in-oil emulsions. After an optimal duration of fluorination (see Table 1 for details), the particles were partially wetted by both the aqueous phase and the fluorous phase. They spontaneously adsorbed to the aqueous-fluorous interface and generated stable emulsions for over 24 hours (
(39) TABLE-US-00001 TABLE 1 Optimization of 1H-1H-2H-2H perfluorooctyl triethoxysilane (FAS) concentration and fluorination time to generate stable emulsions. Time of Volume of 60 nm Volume of FAS particle Stable water/HFE- silica solution added isolation 7500 emulsion (mL) (μL) (min) formed? 5.25 50 60 No 5.25 250 60 Yes (Sample B in FIG. 8) 5.25 1250 60 No (Sample C in FIG. 8) 5.25 250 5 No 5.25 250 240 No
(40) Based on the stability of emulsions formed by agitation (Table 1), particles that generated the most stable emulsions were identified, and their compatibility with microfluidics was demonstrated. Similar to surfactant systems, monodisperse drops stabilized by F—SiO.sub.2 NPs can be generated using microfluidic flow-focusing nozzles. Here a single size of particles (780 nm) was investigated. The use of particles of other sizes did not change the results. Particles larger than 1 μm were increasingly likely to clog the channels after prolonged operation, however.
(41) F—SiO.sub.2 NPs were effective in preventing the leakage of resorufin, a model dye that can leak from drops stabilized by EA-surfactant. In an assay to measure leakage, two types of drops were generated. “Positive” drops contained a mixture of resorufin and fluorescein. Fluorescein does not leak in drops stabilized by surfactants for at least 36 hours, and was thus used to tag the positive drops. “Negative” drops contained buffer only. By mixing the positive and negative drops, the leakage of resorufin can be characterized by measuring the time evolution of resorufin fluorescence intensity among positive and negative drops.
(42) As a first test of biocompatibility of the nanoparticles, the growth rate of E. coli were compared, as measured by an increase in the optical density of cell suspension at 600 nm (OD.sub.600), when the cells grew: i) in contact with HFE-7500 without any surfactants or nanoparticles, ii) inside drops stabilized by the biocompatible EA-surfactant in HFE-7500, and iii) inside drops stabilized by F—SiO.sub.2 NPs in HFE-7500. Both HFE-7500 and EA-surfactant have been shown previously to be biocompatible.
(43) It was demonstrated that F—SiO.sub.2 NPs were not toxic to mammalian cells, and could provide a solid-like interface for the adhesion and growth of these cells. Guided by the studies with E. coli, a toxicity assay was designed using cells cultured in 96-well plate in the presence of 5% (v/v) of HFE-7500 that contained F—SiO.sub.2 NPs. 3T3 fibroblasts cultured in the presence of F—SiO.sub.2 NPs exhibited the same growth rate over three days as cells cultured on polystyrene without the nanoparticles (
(44) In addition, it was observed that anchorage-dependent cells, such as fibroblasts and luminal breast carcinoma MCF-7, attached to an inclined fluorinated water-oil interface stabilized by F—SiO.sub.2 NPs. This finding would be surprising according to previous work which showed that the interface between fluorinated oil or air and water was non-fouled by biological contaminants such as serum, blood, and biofilm-promoting bacteria cells. The water-oil interface is “slippery” and such interfaces, when inclined, should not retain cells or serum proteins to which cells adhere. To investigate both adhesion and slipping, a curved aqueous-fluorous interface was formed inside individual wells in a 96-well plate by placing 100 μL of cell suspension on top of 100 μL of HFE-7500 containing EA-surfactant or F—SiO.sub.2 NPs (
(45) As expected, cells failed to adhere to an interface stabilized by EA-surfactant. In contrast, cells adhered to F—SiO.sub.2 NPs-stabilized interface (
(46) In conclusion, described herein includes a method for the synthesis of amphiphilic silica nanoparticles for the generation of stable aqueous droplets in a range of fluorinated oils. The particles effectively prevented the leakage of resorufin, a model dye that can leak in surfactant-stabilized drops. It was also showed the particles were compatible with microfluidic flow-focusing devices. The presence of the particles did not affect the growth of E. coli compared with biocompatible EA-surfactant. Importantly, the particles were compatible with the growth and spreading of adherent mammalian cells, a capability not easily achievable in surfactant systems. These particles should complement surfactants in the stabilization of droplets and open up new applications in droplet microfluidics.
(47) Fluorinated Pickering Emulsion with Non-Adsorbing Interfaces
(48) Described here is the use of fluorinated Pickering emulsions with non-adsorbing interfaces in droplet-based protein assays such as enzymatic assays. Nanoparticle and microparticle surface can be rendered non-adsorbing to proteins (e.g., enzymes) by in-situ adsorption of hydrophilic polymers such as polyethylene glycol (PEG) on particle surfaces. Enzyme activities are preserved in droplets stabilized by PEG-adsorbed nanoparticles and microparticles, and are comparable with those in drops stabilized by PFPE-PEG surfactants. In addition, the non-adsorbing Pickering emulsions successfully prevent inter-drop molecular transport, thereby maintaining the accuracy of droplet assays. The particles can be synthesized according to economical and scalable procedures. The PEG adsorbed nanoparticles and microparticles described herein are thus a competitive alternative to the current surfactant-based system. Alternatively, particles covalently grafted with hydrophilic polymers can be dispersed into the continuous phase to stabilize enzyme activities in the dispersed phase.
(49) Droplet Stability.
(50) Drops were generated using a flow-focusing nozzle with one inlet for the continuous phase and two inlets for the dispersed phase (
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(52) PEG Adsorption onto Particle Surface.
(53) To probe the adsorption of PEG onto particle surface, the spatial distribution of PEG within the droplets stabilized by F—SiO2 NPs and EA-surfactants respectively were measured (
(54) Since the molecular weight of the PEG (MW˜5000-8000) was smaller than that of the enzymes used (MW˜89000 for bacterial alkaline phosphatase and MW˜44000 for horseradish peroxidase), the diffusion and adsorption of PEG onto nanoparticle surfaces should be faster than that of the enzymes. In addition, the adsorption of PEG can be driven by the formation of hydrogen bonds in the presence of polar groups such as silanol groups on surfaces. Formation of hydrogen bond between PEG chains and silanol groups occurred since the silica nanoparticles were partially fluorinated. Subsequent enzyme adsorption on particle surface is prevented due to steric repulsions between the PEG chains and enzymes. Such repulsions can predominate over attractive interactions between enzymes and nanoparticle surface.
(55) Restoration of Enzymatic Activities.
(56) To test if the presence of PEG would preserve enzymatic activity, two representative assays involving enzymes alkaline phosphatase and horseradish peroxidase respectively were investigated. In the first assay, Bacterial Alkaline Phosphatase (BAP) was used to catalyze the hydrolysis of fluorescein diphosphate (FDP) to produce a green fluorescent product fluorescein. Resorufin (0.01 mg/mL, 42.5 μM) was introduced to each drop as an internal standard to normalize the fluorescence intensity of fluorescein. Fluorescence intensity was normalized by calculating the fluorescence intensity ratio between fluorescein and resorufin. Due to the non-overlapping excitation/emission wavelengths between fluorescein (494 nm/521 nm) and resorufin (571 nm/585 nm), the presence of resorufin did not interfere with the fluorescence of fluorescein.
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(58) Covalent Grafting and Chemisorption of PEG.
(59) To coat the nanoparticles with PEG, there are two options: 1) covalent grafting of PEG onto nanoparticles prior to droplet generation, followed by the dispersion of these particles into the continuous phase, and 2) chemisorption of free PEG molecules from the dispersed phase onto F—SiO2 NPs originally dispersed in the continuous phase after droplet formation.
(60) In the first approach, dispersion of particles in the continuous phase can avoid undesirable interactions between particles and droplet contents. PEG chains were grafted on the surface of F—SiO2 NPs with different coating densities by the hydrolysis of PEG linked silane (mPEG-silane). The PEG density at the interface was adjusted by varying the concentration of precursor mPEG-silane in the synthesis of the F—SiO2 NPs. These PEGylated particles (referred to as “PEG.sub.covalent-F—SiO.sub.2 NPs”) were used as droplet stabilizer to test BAP activity inside the drops (
(61) In the second approach, PEG is introduced separately into the dispersed phase, while F—SiO.sub.2 NPs are used in the continuous phase. The PEG coating/adsorption process took place after the particles adsorbed at the water-oil interface (to form “PEG.sub.ads-F—SiO.sub.2 NPs”). The PEG density at the interface was controlled independently by varying the concentration of PEG in the dispersed phase. The high solubility of PEG in aqueous solutions ensured sufficient coating density on particle surface to preserve enzyme activity. It was found that enzymatic activity was fully restored when sufficient amount of PEG (e.g., >˜1 mg/mL) was present in the droplets; increasing PEG concentration beyond this value did not affect the reaction rate (
(62) Leakage Prevention for the Accurate Interrogation of Enzymatic Activities.
(63) In many assays such as the directed evolution of enzymes, a fraction of the drops would contain enzymes with desired levels of activities. In order to quantify the variation in enzymatic activities from drop to drop accurately, it is important that the contents of the drops—including the fluorophores used in fluorogenic substrates—do not leak and cause cross-contamination. To show that the drops described herein did not leak, a model system was constructed with Amplex Red assay, where two populations of droplets with different enzymatic reaction rates were mixed. The different reaction rates were achieved by using different enzyme concentrations ([HRP]=0.1 mU/mL and 5 mU/mL, respectively) in the two populations of drops, while the substrate concentration was fixed ([Amplex Red reagent]=75 μM, [H2O2]=1 mM). The population of drops with high HRP concentration ([HRP]=5 mU/mL) was also labelled with fluorescein at a high concentration ([fluorescein]=10 μM). The population with low HRP concentration ([HRP]=0.1 mU/mL) was labelled with fluorescein at a low concentration ([fluorescein]=2 μM). Fluorescein was chosen to label the droplets since it is non-leaky even in drops stabilized by EA-surfactants (
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(65) Advantages Compared to State-of the-Art Droplet Stabilizers.
(66) Table 2 summarizes the advantages of some embodiments of the invention described herein compared with other state-of-the-art droplet stabilizers: 1) The particles described herein are economical to synthesize and characterize. They do not require extra synthesis and purification steps to graft PEG onto particles. 2) They are effective in preserving enzyme activity. 3) They are effective in preventing the leakage of small molecules. Embodiments of the invention described herein demonstrate the ability to prevent both enzyme deactivation and molecular leakage. Combined with the biocompatibility with the attachment and growth of anchorage-dependent cells, the particles described herein fulfill criteria needed for the success of droplet assays. The Pickering system presented here offers a straightforward, flexible and economical platform for enzymatic studies in droplets, as well as new opportunities for a large range of biochemical assays.
(67) TABLE-US-00002 TABLE 2 Estimated Simplicity of Cost Enzyme Accuracy (no synthesis ($/mL).sup.a activity leakage) EA-surfactant Complicated ~$18 High Low Electrostatically Scalable ~$0.16 High Low.sup.b modified surfactant F—SiO.sub.2NPs Scalable ~$0.9 Low High PEG.sub.ads-F—SiO.sub.2 Scalable ~$0.9 High High NPs (this work) .sup.adenotes cost (in USD) per mL of 2% (w/w) surfactant solution or nanoparticle suspension in HFE-7500. .sup.bsee FIG. 31.
WORKING EXAMPLES
Example 1.1
Two-Step Synthesis of Fluorinated Silica Nanoparticles (F—SiO.SUB.2 .NPs)
(68) 3.57 mL of tetraethyl orthosilicate (TEOS) was added to a solution containing 50 mL of ethanol (EtOH), 1 mL of deionized water and 1.43 mL of NH.sub.4OH (28 wt. %). The reaction mixture was then stirred vigorously at room temperature for 12 hours to yield pristine SiO.sub.2 NPs with a diameter of about 60 nm. 250 μL of 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) was added directly to every 5.25 mL of the synthesized SiO.sub.2 NPs solution obtained above, followed by vigorous stirring at room temperature for 60 min. To terminate the reaction, 22 mL of EtOH was added to dilute the reacting solution, and the particles were washed by centrifugation at 10,000 rpm for 20 min. After 3 cycles of washing, the supernatant was removed and the resulting particles were desiccated overnight. The mass of the solid was weighed and the solid was then re-dispersed in fluorinated solvent (HFE7500™ (3M), FC-40 or perfluoromethyldecalin). After fluorination, the resulting particles were dispersible in fluorinated oil. Syringe filter (polytetrafluoroethylene (PTFE) membrane, pore size 450 nm, VWR) were used to remove the dust and aggregates present in the suspension.
(69) In a pilot scale-up test, up to 3 grams of F—SiO.sub.2 NPs were synthesized in a single batch. 10 mL of 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) was added directly to 100 mL of the synthesized SiO2 NPs solution obtained above, followed by vigorous stirring at room temperature for 40 min. To terminate the reaction, every 10 mL of the reaction mixture was diluted with 40 mL EtOH, centrifuged at 5000 rpm (˜4700×g, Sorvall LEGEND X1R). After 3 cycles of washing, the supernatant was removed and the resulting particles were desiccated overnight. The scales can be further increased to at least tens of grams per synthesis.
Example 1.2
Fluorination of Commercially Available Silica Particles
(70) Silica nano- or micro-particles from Bangs Lab were concentrated from the original aqueous suspension by centrifugation at 1000 rpm. After removing the supernatant, 5.36 mL of EtOH and 153.6 μL of NH.sub.4OH were added to 10 μL of the concentrated particle suspension. Appropriate amount of FAS was added under vigorous stirring (see Table 3 for details). After 40 min of reaction, the particles were isolated by centrifugation at 1000 rpm. Such particles were highly dispersible in fluorinated solvents and concentrations of 5% (w/w) in HFE-7500 can be obtained.
(71) TABLE-US-00003 TABLE 3 For each experiment, 400 μL of silica particles suspension was centrifuged at 1000 rpm for 5 min. The supernatant was discarded and the particles were concentrated to a volume of approximately 10 μL. This concentrated particle suspension was then redispersed to a solution containing 5.36 mL EtOH and 153.6 μL NH.sub.4OH. After that, various volumes of neat 1H-1H-2H-2H perfluorooctyl triethoxysilane (FAS) were added to the above solution mixture under vigorous stirring at room temperature. All the fluorinated particles were isolated at 40 min. Volume of neat Type of pristine wt. % in original FAS added silica spheres suspension (μL) 150 nm silica nanosphere 9.8 800 780 nm silica nanosphere 10.0 600 1.01 μm silica microsphere 9.95 450 2.01 μm silica microsphere 9.8 120 5.2 μm silica microsphere 10.09 40
Example 1.3
E. coli Cell Culture
(72) K12 E. coli and E. coli expressing Green Fluorescent Protein (GFP) (abbreviated as “GFP E. coli”) were obtained from the laboratory of Jianghong Rao at the Department of Radiology, School of Medicine, Stanford University. Liquid cultures of E. Coli were grown by picking a colony from the agar plate, and dipping into a growth media which contained autoclaved LB Broth with 20 μg/mL of tetracycline (for K12 E. coli) or 50 μg/mL of kanamycin and 0.1 mM Isopropyl β-D-1-thiogalactopyranoside (IPTG) (for GFP E. coli). To measure the growth rate of K12 E. Coli inside droplets stabilized by F—SiO.sub.2 NPs, emulsions of E. coli culture were formed by vortex-mixing 1 mL of the liquid culture (10.sup.5 cells/mL) with 6 mL of HFE-7500 containing either F—SiO.sub.2 NPs or biocompatible EA surfactant (Raindance Technologies). The polydispersity of the drops here did not affect the measurements of cell growth. The resulting emulsions were incubated in a shaker-incubator at 37° C. and at 250 rpm. At different time points, 20 μL, of the emulsions were extracted and destabilized to measure cell concentrations. The concentration of cells was measured using Thermo Scientific NanoDrop™ 1000 Spectrophotometer, which reports the optical density at 600 nm. The optical densities to cell concentration for E. coli have been calibrated by other groups.
Example 1.4
Resorufin Leakage Test
(73) Positive and negative drops were generated from flow-focusing device with serpentine channel separately. The continuous phase contained 4% (w/w) 780 nm F—SiO2 NPs in HFE-7500. Positive drops contained 220 μM resorufin and 10 μM fluorescein in 1×PBS, and negative drops contained 1×PBS. The drops were collected separately in two Eppendorf tubes. For F—SiO.sub.2 NPs-stabilized drops, the un-adsorbed NPs in continuous phase was removed by washing with FC-40 three times before the positive and negative drops were mixed at 1:1 ratio. EA-surfactant stabilized positive and negative drops were mixed at 1:1 ratio. The mixed drops were incubated at room temperature (293 K) and the fluorescence intensity of the droplet mixture was surveyed at different times.
Example 1.5
Mammalian Cell Culture
(74) MCF-7 breast carcinoma and 3T3 fibroblasts were acquired from American Tissue Culture Collection (ATCC). Cells were propagated in minimal essential medium (MEM) supplemented with 10% of Fetal Bovine Serum (FBS for MCF7) or 10% Calf Bovine Serum (CBS for 3T3) and passaged when cells reached ˜80% confluence. For seeding on water-oil interfaces or nanoparticle-laded water-oil interfaces, the cells were detached using trypsin-EDTA for 5 minutes, neutralized with serum-containing medium, rinsed and resuspended in growth medium at 25,000 cell/mL. The suspension (200 μL, 5000 cells per well) was dispensed into a well of 96-well plate (hydrophobic polystyrene), which contained 100 μL of HFE or HFE-surfactant suspension. A two-layered system with significant curvature on the liquid-liquid interface was formed spontaneously. The suspension has to be dispensed rapidly along the wall of the well as one continuous stream to avoid formation of segregated aqueous droplets. The cells were allowed to sediment onto the water-oil interface for at least 1-2 hours prior to examining the cells by phase-contrast microscope (Leica) equipped with Phantom V7.3 camera (Vision Research). Experiments that used fluorescently labeled 3T3 cells were conducted similarly with one exception: the cells were incubated with 1 μg/mL solution of carboxyfluorescein succinimidyl ester (CFSE) in growth medium for 10 minutes, rinsed with CFSE-free medium and allowed to recover in growth medium for 15 minutes prior to detachment with trypsin and seeding. The CFSE-label was stable over 3-4 days; the intensity decreased as the amount of CFSE per cell was halved at each cell division. Cells were imaged using Zeiss LSM-700 laser-scanning confocal microscope equipped with 480 nm solid-state lasers, 10× or 20× objective, and the Zen software.
Example 2.1
Materials
(75) All chemicals were used as purchased without purification Absolute ethanol (99%), tetraethyl orthosilicate (TEOS) (98%), ammonium hydroxide solution (28%), poly-ethylene glycol (PEG, MW=8000), fluorescein, sodium salts of resazurin and resorufin were purchased from Sigma-Aldrich. 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) (97%) was purchased from Fisher Scientific. Methoxyl PEG fluorescein (mPEG-Fluorescein, MW=5000) was purchased from Nanocs Inc. Methoxyl PEG silane (MW=1000) was purchased from Laysan Bio. Inc. Fluorescein diphosphate (FDP), bacterial alkaline phosphatase (BAP), and Amplex Red enzyme kit were purchased from Life Technologies.
Example 2.2
Synthesis of 100 nm F—SiO.SUB.2 .NPs
(76) 100 nm F—SiO.sub.2 NPs were synthesized according to the method disclosed in U.S. Prov. Appl. No. 62/068,510 filed Oct. 24, 2014. 3.57 mL of TEOS was added to a solution mixture containing 50 mL of ethanol (EtOH), 1 mL of deionized water, and 1.43 mL of NH.sub.4OH (28 wt %). The solution was stirred vigorously at room temperature for 12 hours. 100 μL of FAS was then added directly to every 3 mL of the synthesized SiO.sub.2 NPs solution obtained above, followed by vigorous stirring at room temperature for 60 min. EtOH was added to dilute the reacting solution to terminate the reaction, and the particles were washed by centrifugation at 10,000 rpm for 20 min. After three cycles of washing, the supernatant was removed and the resulting particles were desiccated overnight.
Example 2.3
Functionalization of F—SiO.SUB.2 .NPs with PEGylated Silane
(77) 300 μL of FAS and either 80 μL or 750 μL of mPEG-silane in EtOH (10 mg/mL) were mixed and then added to 3 mL of synthesized SiO.sub.2 NPs. The resulting mixture was stirred at room temperature for 30 min and the PEGylated NPs were isolated following the same procedure as that described for F—SiO.sub.2 NPs.
Example 2.4
Droplet Generation
(78) Monodisperse microdroplets were generated from flow-focusing devices. The continuous phase contains either 1.5% (w/w) 100-nm F—SiO.sub.2 NPs dispersed in HFE-7500 or 2% (w/w) EA-surfactant in HFE-7500. For the dispersed phase, the composition is listed in Table 4. The flow rate of the continuous phase and the two streams of dispersed phase were fixed at 1.0 mL/hr, 0.1 mL/hr and 0.1 mL/hr respectively.
(79) TABLE-US-00004 TABLE 4 Aqueous stream 1 Aqueous stream 2 Final concentration Assay (lower stream in FIG. 19) (upper stream in FIG. 19) in droplet FDP/BAP 40 μL 1 mM FDP 500 μL 37.5 U/mL BAP.sup.c [FDP] = 20 μM, (with + 20 μL 1 mg/mL resorufin + 400 μL 20 mg/mL PEG [BAP] = 9.375 U/mL PEG).sup.a + 940 μL 50 mM Tris-HCl + 100 μL 50 mM Tris-HCl [PEG] = 4 mg/mL [resorufin] = 0.01 mg/mL.sup.e FDP/BAP 40 μL 1 mM FDP 500 μL 37.5 U/mL BAP [FDP] = 20 μM, (without + 20 μL 1 mg/mL resorufin + 500 μL 50 mM Tris-HCl [BAP] = 9.375 U/mL PEG).sup.a + 940 μL 50 mM Tris-HCl [resorufin] = 0.01 mg/mL Amplex 10 μL 10 mM Amplex Red 100 μL 100 mU/mL HRP.sup.d [Amplex Red] = 50 μM, red/HRP in DMSO + 100 μL 20 mM H.sub.2O.sub.2 [HRP] = 5 mU/mL, (with + 200 μL 0.1 mM fluorescein + 400 μL 20 mg/mL PEG [H.sub.2O.sub.2] = 1 mM, PEG).sup.b + 790 μL 50 mM + 400 μL 50 mM sodium [PEG] = 4 mg/mL, sodium phosphate phosphate buffer [fluorescein] = 10 μM buffer Amplex 10 μL 10 mM Amplex Red 100 μL100 mU/mL HRP [Amplex Red] = 50 μM, red/HRP in DMSO + 100 μL 20 mM H.sub.2O.sub.2 [HRP] = 5 mU/mL, (without + 200 μL 0.1 mM fluorescein + 800 μL 50 mM sodium [H.sub.2O.sub.2] = 1 mM, PEG).sup.b + 790 μL 50 mM phosphate buffer [fluorescein] = 10 μM sodium phosphate buffer .sup.aUnless otherwise specified, all reagents were dissolved in 50 mM Tris-HCl .sup.bUnless otherwise specified, all reagents were dissolved in 50 mM sodium phosphate buffer .sup.c1 Unit is defined as the amount of BAP required to hydrolyze 1 nmol of ATP in 30 min at 37° C. .sup.d1 Unit is defined as the amount of HRP required to form 1.0 mg purpurogallin from pyrogallol in 20 seconds at pH 6.0 and 20° C. .sup.eResorufin is an appropriate choice of internal standard, since resorufin leaks in drops stabilized by EA-surfactants when there is a concentration difference among the drops, here leakage is not observed since all drops contained equal concentrations of resorufin.
Example 2.5
Leakage Test for Amplex Red Assay with Different [HRP]
(80) Positive and negative droplets were generated separately. Continuous phase contained 1.5% (w/w) 100 nm F—SiO2 NPs dispersed in HFE-7500. Positive droplets contained 75 μM Amplex Red reagent, 5 mU/mL HRP, 4 mg/mL PEG, 1 mM H.sub.2O.sub.2 and 10 μM fluorescein. Negative droplets contained 75 μM Amplex Red reagent, 0.1 mU/mL HRP, 4 mg/mL PEG, 1 mM H.sub.2O.sub.2 and 2 μM fluorescein. The droplets were collected in two Eppendorf tubes. Excess NPs in continuous phase was removed by washing with FC-40 three times. FC-40 was used instead of HFE-7500 to minimize partitioning of resorufin into the continuous phase, which was observed for fluorinated solvents that contained aliphatic ether groups. The positive droplets and negative droplets were then mixed at 1:1 ratio. The droplet mixture was incubated at room temperature (293 K) for 4 hours. In a separate control experiment, positive and negative droplets stabilized by EA-surfactant were mixed. The procedures were identical to that for NPs stabilized droplets except the continuous phase contained 2% EA-surfactant in HFE-7500, and no washing step was involved before the droplets were mixed.
Example 3.1
Use of Amphiphilic Silica Nanoparticles for Antibiotic Resistance Studies
(81) Amphiphilic silica nanoparticles were applied to study single-cell level variability in antibiotic resistance when the microbial population is subject to temporal variations in drug dosage (e.g., uniform drug dosage v. increasing dosage over time) and different drug combinations. Because of leakage problem in surfactant droplets, the standard alamarBlue method could not be used for live or resistant E. coli detection in droplets. By using droplets stabilized by amphiphilic silica nanoparticles, the concentration of live E. coli can be detected in droplets, which enables the detection of antibiotic resistance. Previously, it was found that stronger resistance evolved with increasing dosage over time, but all time points were identified by peaks in bulk optical density measurements which can only detect cell concentrations>10.sup.6 cfu/mL. As such, the details of exactly when the mutations started and how much of the subpopulation acquired such mutations were unknown. Using droplet microfluidics, better statistics were obtained on the composition of resistant subpopulations with enhanced time resolution. With established dielectrophoresis-based droplet sorting technology, the drops containing resistant cells can be sorted for subsequent sequencing to identify the genes responsible for the antibiotic resistance.
Additional Embodiments
Embodiment 1
(82) A composition comprising at least one amphiphilic nanoparticle, wherein the nanoparticle is partially fluorinated, and wherein the nanoparticle has a contact angle θ of 90° to 135° when placed at an interface of a fluorous phase and an aqueous phase.
Embodiment 2
(83) The composition of Embodiment 1, wherein the nanoparticle is a silica nanoparticle.
Embodiment 3
(84) The composition of Embodiment 2, comprising a fluorous phase comprising at least one fluorinated solvent, wherein the silica nanoparticle is dispersed in the fluorinated solvent.
Embodiment 4
(85) The composition of Embodiment 2, comprising a fluorous phase comprising at least one fluorinated solvent and an aqueous phase, wherein the silica nanoparticle is absorbed to the interface of the fluorous phase and the aqueous phase.
Embodiment 5
(86) The composition of Embodiment 2, wherein the silica nanoparticle has at least one lateral dimension of 10-950 nm.
Embodiment 6
(87) The composition of Embodiment 2, wherein the silica nanoparticle comprises fluorinated alkyl groups on the surface.
Embodiment 7
(88) The composition of Embodiment 2, wherein the silica nanoparticle is partially derivatized with 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) on the surface.
Embodiment 8
(89) The composition of Embodiment 4, comprising an emulsion comprising (a) a continuous fluorous phase, and (b) at least one aqueous phase droplet dispersed in said continuous fluorous phase.
Embodiment 9
(90) The composition of Embodiment 4, wherein the fluorous phase comprises at least one of HFE-7500, FC-40, and PFMD.
Embodiment 10
(91) The composition of Embodiment 4, wherein the aqueous phase comprises at least one fluorescent molecule.
Embodiment 11
(92) The composition of Embodiment 4, wherein the aqueous phase comprises at least one cell.
Embodiment 12
(93) The composition of Embodiment 4, wherein the aqueous phase comprises at least one cell anchored to the silica nanoparticle at the interface of the fluorous phase and the aqueous phase.
Embodiment 13
(94) A droplet microfluidic device comprising the composition of Embodiment 1.
Embodiment 14
(95) A method for droplet-based assay, comprising dispersing at least one aqueous phase droplet in a continuous fluorous phase in a microfluidic channel, wherein at least one amphiphilic nanoparticle is absorbed to the interface of the continuous fluorous phase and the aqueous phase droplet, and wherein the nanoparticle is partially fluorinated.
Embodiment 15
(96) The method of Embodiment 14, wherein the nanoparticle is a silica nanoparticle.
Embodiment 16
(97) The method of Embodiment 15, wherein the silica nanoparticle has at least one lateral dimension of 10-950 nm.
Embodiment 17
(98) The method of Embodiment 15, wherein the silica nanoparticle comprises fluorinated alkyl groups on the surface.
Embodiment 18
(99) The method of Embodiment 15, wherein the silica nanoparticle is partially derivatized with 1H, 1H, 2H, 2H-perfluorooctyltriethoxysilane (FAS) on the surface.
Embodiment 19
(100) The method of Embodiment 15, wherein the fluorous phase comprises at least one fluorinated solvent.
Embodiment 20
(101) The method of Embodiment 15, wherein the fluorous phase comprises at least one of HFE-7500, FC-40, and PFMD.
Embodiment 21
(102) The method of Embodiment 15, wherein the aqueous phase comprises at least one fluorescent molecule.
Embodiment 22
(103) The method of Embodiment 15, wherein the aqueous phase comprises at least one cell.
Embodiment 23
(104) A method for making the composition of Embodiment 2, comprising reacting silica nanoparticles with at least one fluorinating agent to obtain a composition comprising amphiphilic silica nanoparticles, wherein at least 50% of the silica nanoparticles in the composition obtained have a contact angle θ of about 90° to 135° when placed at an interface of a fluorous oil phase and a water phase.
Embodiment 24
(105) A method for droplet-based assay, comprising dispersing at least one aqueous phase droplet in a continuous fluorous phase in a microfluidic channel, wherein the continuous fluorous phase comprises at least one partially fluorinated amphiphilic particle adsorbed to an interface of the continuous fluorous phase and the aqueous phase droplet, and wherein: (a) the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic particle at the interface or (b) the amphiphilic particle is covalently grafted with at least one hydrophilic polymer.
Embodiment 25
(106) The method of Embodiment 24, wherein the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic particle at the interface.
Embodiment 26
(107) The method of Embodiment 24, wherein the hydrophilic polymer comprises at least one of polyethylene glycol (PEG), polyethers, polyacrylamide (PAM), polyethylenimine (PEI), poly(acrylic acid), polymethacrylate, poly(vinyl alcohol) (PVA), and poly(vinylpyrrolidone) (PVP).
Embodiment 27
(108) The method of Embodiment 24, wherein the amphiphilic particle is a nanoparticle or a microparticle.
Embodiment 28
(109) The method of Embodiment 24, wherein the amphiphilic particle is a silica particle.
Embodiment 29
(110) The method of Embodiment 24, wherein the amphiphilic particle is functionalized with fluorinated alkyl groups on the surface.
Embodiment 30
(111) The method of Embodiment 24, wherein the fluorous phase further comprises at least one fluorinated solvent.
Embodiment 31
(112) The method of Embodiment 24, wherein the fluorous phase comprises at least one of HFE-7500, HFE-7600, FC-40, and PFMD.
Embodiment 32
(113) The method of Embodiment 24, wherein the aqueous phase further comprises at least one protein selected from the group consisting of enzymes, antibodies, hormones, structural proteins, and membrane proteins.
Embodiment 33
(114) The method of Embodiment 24, wherein the aqueous phase further comprises at least one fluorescent molecule.
Embodiment 34
(115) The method of Embodiment 24, wherein the amphiphilic particle is a silica nanoparticle, wherein the hydrophilic polymer comprises polyethylene glycol (PEG), and wherein the aqueous phase comprises at least one enzyme.
Embodiment 35
(116) A Pickering emulsion comprising a continuous fluorous phase and at least one aqueous phase droplet dispersed therein, wherein the continuous fluorous phase comprises at least one partially fluorinated amphiphilic particle adsorbed to an interface of the continuous fluorous phase and the aqueous phase droplet, and wherein: (a) the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic particle at the interface or (b) the amphiphilic particle is covalently grafted with at least one hydrophilic polymer
Embodiment 36
(117) The Pickering emulsion of Embodiment 35, wherein the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic particle at the interface.
Embodiment 37
(118) The Pickering emulsion of Embodiment 35, wherein the hydrophilic polymer comprises at least one of polyethylene glycol (PEG), polyethers, polyacrylamide (PAM), polyethylenimine (PEI), poly(acrylic acid), polymethacrylate, poly(vinyl alcohol) (PVA), and poly(vinylpyrrolidone) (PVP).
Embodiment 38
(119) The Pickering emulsion of Embodiment 35, wherein the amphiphilic particle is a nanoparticle or a microparticle.
Embodiment 39
(120) The Pickering emulsion of Embodiment 35, wherein the amphiphilic particle is a silica particle.
Embodiment 40
(121) The Pickering emulsion of Embodiment 35, wherein the amphiphilic particle is functionalized with fluorinated alkyl groups on the surface.
Embodiment 41
(122) The Pickering emulsion of Embodiment 35, wherein the fluorous phase further comprises at least one fluorinated solvent.
Embodiment 42
(123) The Pickering emulsion of Embodiment 35, wherein the fluorous phase comprises at least one of HFE-7500, HFE-7600, FC-40, and PFMD.
Embodiment 43
(124) The Pickering emulsion of Embodiment 35, wherein the aqueous phase further comprises at least one protein selected from the group consisting of enzymes, antibodies, hormones, structural proteins, and membrane proteins.
Embodiment 44
(125) The Pickering emulsion of Embodiment 35, wherein the aqueous phase further comprises at least one fluorescent molecule.
Embodiment 45
(126) The Pickering emulsion of Embodiment 35, wherein the amphiphilic particle is a silica nanoparticle, wherein the hydrophilic polymer comprises polyethylene glycol (PEG), and wherein the aqueous phase comprises at least one enzyme.
Embodiment 46
(127) A droplet microfluidic device comprising a microfluidic channel, wherein microfluidic channel comprises a continuous fluorous phase and at least one aqueous phase droplet dispersed therein, wherein the continuous fluorous phase comprises at least one partially fluorinated amphiphilic nanoparticle adsorbed to an interface of the continuous fluorous phase and the aqueous phase droplet, and wherein: (a) the aqueous phase droplet comprises at least one hydrophilic polymer adsorbed to the amphiphilic nanoparticle at the interface or (b) the amphiphilic particle is covalently grafted with at least one hydrophilic polymer.
Embodiment 47
(128) The method of Embodiment 14, wherein the aqueous phase droplet comprises prokaryotic cells (e.g., bacteria) and/or eukaryotic cells (e.g., yeast, mammalian cells), and wherein the method comprises growing/fermenting the cells in the aqueous phase.
Embodiment 48
(129) The method of Embodiment 47, wherein the cells produce at least one biofuel.
Embodiment 49
(130) The method of Embodiment 24, wherein the aqueous phase droplet comprises prokaryotic cells (e.g., bacteria) and/or eukaryotic cells (e.g., yeast, mammalian cells), and wherein the method comprises growing/fermenting the cells in the aqueous phase.
Embodiment 50
(131) The method of Embodiment 49, wherein the cells produce at least one biofuel.
Embodiment 51
(132) The method of Embodiment 14, wherein the aqueous phase droplet comprises at least one cell and at least one antibiotic, and wherein the method comprises detecting the cell's antibiotic resistance.
Embodiment 52
(133) The method of Embodiment 51, wherein the aqueous phase droplet further comprises at least one fluorophore or fluorogenic substrate, and wherein the method comprises detecting intensity of a fluorescence signal.
Embodiment 53
(134) The method of Embodiment 51, wherein the method further comprises sorting an aqueous phase droplet comprising an antibiotic-resistant cell, and sequencing and/or genotyping the antibiotic-resistant cell.
Embodiment 54
(135) The method of Embodiment 24, wherein the aqueous phase droplet comprises at least one cell and at least one antibiotic, and wherein the method comprises detecting the cell's antibiotic resistance.
Embodiment 55
(136) The method of Embodiment 54, wherein the aqueous phase droplet further comprises at least one fluorophore or fluorogenic substrate, and wherein the method comprises detecting intensity of a fluorescence signal.
Embodiment 56
(137) The method of Embodiment 54, wherein the method further comprises sorting an aqueous phase droplet comprising an antibiotic-resistant cell, and sequencing and/or genotyping the antibiotic-resistant cell.
Embodiment 57
(138) The method of Embodiment 14, wherein the aqueous phase droplet comprises at least one cell and at least one drug, and wherein the method comprises detecting the cell's response to the drug.
Embodiment 58
(139) The method of Embodiment 57, wherein the method further comprises determining toxicity, drug efficacy, drug resistance, and/or dose response.
Embodiment 59
(140) The method of Embodiment 24, wherein the aqueous phase droplet comprises at least one cell and at least one drug, and wherein the method comprises detecting the cell's response to the drug.
Embodiment 60
(141) The method of Embodiment 59, wherein the method further comprises determining toxicity, drug efficacy, drug resistance, and/or dose response.
(142) As used herein, the singular terms “a,” “an,” and “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to a molecule can include multiple molecules unless the context clearly dictates otherwise.
(143) As used herein, the terms “substantially,” “substantial,” and “about” are used to describe and account for small variations. When used in conjunction with an event or circumstance, the terms can refer to instances in which the event or circumstance occurs precisely as well as instances in which the event or circumstance occurs to a close approximation. For example, when used in conjunction with a numerical value, the terms can refer to a range of variation of less than or equal to ±10% of that numerical value, such as less than or equal to ±5%, less than or equal to ±4%, less than or equal to ±3%, less than or equal to ±2%, less than or equal to ±1%, less than or equal to ±0.5%, less than or equal to ±0.1%, or less than or equal to ±0.05%.
(144) Additionally, amounts, ratios, and other numerical values are sometimes presented herein in a range format. It is to be understood that such range format is used for convenience and brevity and should be understood flexibly to include numerical values explicitly specified as limits of a range, but also to include all individual numerical values or sub-ranges encompassed within that range as if each numerical value and sub-range is explicitly specified. For example, a ratio in the range of about 1 to about 200 should be understood to include the explicitly recited limits of about 1 and about 200, but also to include individual ratios such as about 2, about 3, and about 4, and sub-ranges such as about 10 to about 50, about 20 to about 100, and so forth.
(145) In the foregoing description, it will be readily apparent to one skilled in the art that varying substitutions and modifications may be made to the invention disclosed herein without departing from the scope and spirit of the invention. The invention illustratively described herein suitably may be practiced in the absence of any element or elements, limitation or limitations, which is not specifically disclosed herein. The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention. Thus, it should be understood that although the present invention has been illustrated by specific embodiments and optional features, modification and/or variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scopes of this invention.