EXTRACT OF BACTERIAL ORIGIN PRODUCED BY THE BACTERIA KOCURIA MARINA SP AND USE THEREOF TO GENERATE POLYMER STRUCTURES WITH BIOACTIVE SURFACES ABLE TO INHIBIT MICROBIAL BIOFILM FORMATION
20210289792 · 2021-09-23
Inventors
- Alejandro Dinamarca (Valparaiso, CL)
- Claudia Ibacache (Valparaiso, CL)
- Juan Ojeda (Valparaiso, CL)
- Natalia Romo (Valparaiso, CL)
Cpc classification
A61L29/005
HUMAN NECESSITIES
A01N63/20
HUMAN NECESSITIES
A61L29/16
HUMAN NECESSITIES
C09D7/00
CHEMISTRY; METALLURGY
A01P1/00
HUMAN NECESSITIES
A61L27/54
HUMAN NECESSITIES
International classification
A01N63/20
HUMAN NECESSITIES
A61L29/00
HUMAN NECESSITIES
A61L29/16
HUMAN NECESSITIES
Abstract
The invention relates to a method for obtaining a bacterial extract produced by the bacteria Kocuria marina sp., which prevents biofilm formation, to said extract, and to the use thereof for incorporation into natural or synthetic polymers intended to form structures with active surfaces for preventing microbial biofilm formation, whether for biomedical uses, including clinical uses, industrial uses, or even domestic uses.
Claims
1. Bacterial extract that prevents the formation of biofilms CHARACTERIZED because it comprises supernatant from the culture of the marine bacterium Kocuria sp.
2. Bacterial extract according to claim 1 CHARACTERIZED in that it comprises culture supernatant of the Kocuria sp strain, MM1A2AB Deposit RGM2414 strain.
3. Bacterial extract according to claim 1 or 2 CHARACTERIZED because it comprises between 35 to 45% palmitic acid; between 18 and 28% stearic acid and between 8 and 16% oleic acid.
4. Method to obtain a bacterial extract that prevents the formation of biofilms CHARACTERIZED because the method comprises the following stages: a) growing a marine bacterium Kocuria sp in a sterile culture medium for marine bacteria containing between 0.75 to 1.5% w/v of a single carbon source chosen from sugars, organic acids or aromatic hydrocarbons; containing 80% (vol/vol) sterilized seawater or double distilled water containing NaCl between 3-5% w/vol, b) obtaining the supernatant of the culture or microbial extract, which comprises between 35 to 45% of palmitic acid; between 18 and 28% stearic acid and between 8 and 16% oleic acid.
5. Method according to claim 4 CHARACTERIZED in that the supernatant is separated by centrifugation between 5,000 g to 8,000 g and by filtration through a pore size of 0.25 μm in order to remain substantially free of cells.
6. Method according to claim 5 CHARACTERIZED in that the substantially cell-free supernatant is lyophilized at −80° C. and 10 Mtorr for at least 24 hours and optionally sieved, to obtain the cell-free microbial extract (ETA or extract active tense).
7. Method according to claim 4 CHARACTERIZED in that the culture medium used in step a) also comprises inorganic salts of the macro and micronutrients type such as 0.2 g/L of magnesium sulfate; 0.02 g/L of calcium chloride; 1 g/L of monopotassium phosphate; 1 g/L of diammonium hydrogen phosphate; 1 g/L of potassium nitrate and 0.05 g/L of ferric chloride, all these concentrations can vary in a 20%.
8. Method according to claim 4 CHARACTERIZED in that the incubation to grow the cells is carried out under shaking between 100 to 400 rpm, for 24-72 hours under pH conditions between 6 and 8; temperature between 10° and 35° C.; oxygen saturation between 10-21%.
9. Method according to claim 4 CHARACTERIZED in that the carbon source is chosen from sugars such as glucose or organic acids such as citric acid compounds of the aromatic hydrocarbon type such as toluene, benzene or aromatic molecules of the polycyclic type.
10. Method according to claim 9 CHARACTERIZED in that the carbon source is an aromatic hydrocarbon such as biphenyl.
11. Method according to any of the preceding claims CHARACTERIZED because the strain Kocuria sp. strain MM1A2AB, Deposit RGM2414.
12. Use of the microbial extract of claim 1 CHARACTERIZED because it serves to inhibit the formation of microbial biofilms.
13. Use according to claim 12 CHARACTERIZED because it serves to generate bioactive surfaces with anti-microbial biofilm formation properties
14. Use according to claim 12, CHARACTERIZED because it serves to generate bioactive surfaces that inhibit the formation of bacterial biofilms in environments immersed in liquid fluids that contain nutrients.
15. Use according to claim 12 CHARACTERIZED because it serves to be mixed with polymers in order to integrate into said polymer while maintaining its property of inhibiting the formation of bacterial biofilms in contact with the structure formed by the polymer.
16. Use according to claim 15 CHARACTERIZED in that the polymer is chosen from silicone, vinyl resin, rubber, polyurethane, epoxy resin, alkyd resin, polyester and alkyl resin.
17. Use according to claim 16 CHARACTERIZED because it serves to obtain suitable structures for medical use, such as catheters, probes, orthopedic devices, implants, prosthetic heart valves, prosthetic joints, orthopedic implants, shunts, pacemakers and defibrillators, tubes endo tracheal, hemodialysis/peritoneal dialysis devices, dental implants and intravascular catheters.
18. Use according to claim 16 CHARACTERIZED because it serves to obtain suitable structures for use in the food industry, such as hoses, tapes, or cameras that are in contact with food or beverages.
20. Use according to claim 12 CHARACTERIZED because it serves to obtain formulations of bioactive coatings or bioactive paints for surfaces submerged in fluids of biological origin, food, contaminated water or sea water.
21. Use according to claim 12 CHARACTERIZED because it serves to obtain formulations of additives for water to avoid the formation of biofilms in pipes, hoses and/or metal or plastic containers.
Description
DESCRIPTION OF THE FIGURES
[0010]
[0011]
[0012]
[0013]
[0014]
[0015]
[0016]
DESCRIPTION OF THE INVENTION
[0017] The invention corresponds to a method of obtaining an extracellular extract produced by the growth in a liquid-solid two-phase culture medium of the marine bacterium degrading aromatic hydrocarbons Kocuria sp, to the extract produced, and to the use thereof to inhibit biofilm formation in aqueous environments. The applications of this use can be biomedical uses, including clinical uses, such as for industrial uses or even in domestic uses. In one embodiment, the extract of the invention can be incorporated into natural and synthetic polymeric resins while maintaining their activity, which makes it possible to generate devices or structures on whose surfaces the bacterial biofilm formation is inhibited. The extract of the invention has been called “ETA”, which means Tense Active Extract, and the acronym will be used throughout the application and should be understood as the product of the invention.
[0018] The method of the invention is based on the culture of a bacterium isolated by the inventors and identified by its 16S rDNA as from the genus Kocuria without an assigned species and from the family of gram-positive Micrococaceae, phylum Actinobacteria. This bacterium was isolated from the marine environment as a degrader of aromatic hydrocarbons from petroleum. This particular Kocuria sp strain has Deposit number RGM2414 in the Chilean Collection of Microbial Genetic Resources (CChRGM), dated Dec. 20, 2017.
[0019] To obtain the extract of the invention, these bacteria, Kocuria marina sp, must be cultured in media for marine bacteria. Preferably, the culture medium used is a suitable medium for hydrocarbon-degrading heterotrophic marine bacteria, containing sterilized seawater at 80% (vol/vol) or double-distilled water containing NaCl between 3-5% w/vol), and a source of carbon chosen from sugars, organic acids and/or aromatic hydrocarbons in a concentration between 0.75 to 1.5% w/v. Additionally, a source of particulate inorganic material is added on a micrometer scale in an amount not greater than 0.01% (w/vol) to generate a solid-liquid two-phase culture. Bacteria grow until they reach the stationary phase of the culture.
[0020] The culture supernatant constitutes the microbial extract with properties that inhibit biofilm formation of and that comprises between 35 to 45% of palmitic acid; between 18 and 28% stearic acid and between 8 and 16% oleic acid.
[0021] Among the carbon sources that can be used are sugars such as glucose or organic acids such as citric acid compounds of the aromatic hydrocarbon type such as toluene, benzene, or aromatic molecules of the polycyclic type, such as biphenyl.
[0022] The culture medium must also contain inorganic salts such as magnesium sulfate; calcium chloride; monopotassium phosphate; di-ammonium hydrogen phosphate; potassium nitrate and ferric chloride and with a final pH between 6 and 8. Preferably, the medium comprises 0.2 g/L of magnesium sulfate; 0.02 g/L of calcium chloride; 1 g/L of monopotassium phosphate; 1 g/L of diammonium hydrogen phosphate; 1 g/L of potassium nitrate, and 0.05 g/L of ferric chloride, all these concentrations can vary by 20%. Incubation conditions for growth are shaking between 100 to 400 rpm, for 24-72 hours; temperature between 10° and 35° C.; and oxygen saturation between 10-21%.
[0023] Subsequently, the extract of the invention is obtained, which is preferably the culture supernatant. The processing of the extract depends on the application that it will have, for example for biomedical or biofilm inhibition applications in objects of direct contact with people or food, the extract is substantially cell-free and preferably completely cell-free. In this case, the extraction is based on the separation by centrifugation between 5,000 g to 8,000 g of cells, leaving a supernatant enriched in the extract, which is the bacterial extract of the invention. This obtained product can be subsequently concentrated by lyophilization or separated by chemical extraction, obtaining an extract in the form of a dry, cell-free powder.
[0024] For other embodiments such as inhibition of biofilm formation on submerged surfaces, such as boats or others, the extract of the invention may contain the cells of the marine bacterium Kocuria sp. Reducing the costs of the extracts of the invention, by avoiding a purification step, obtaining the same results in the inhibition of biofilm formation.
[0025] The product of the invention corresponds to a mixture of organic compounds of the fatty acid type, which provide emulsifying properties to the said mixture and inhibit biofilm formation. The inventors have determined that the extract of the invention can be mixed with different natural or synthetic polymeric resins to generate structures or bioactive covering surfaces that inhibit biofilm formation. Where these surfaces inhibit bacterial biofilm formation in environments immersed in liquid fluids that contain nutrients.
[0026] This property has been evaluated by determining biofilm formation using Escherichia coli as a model inoculum of biofilm formation, under different environmental conditions, such as, for example, immersion in human urine, distilled water, and seawater.
[0027] In one embodiment, the invention aims at polymeric structures that comprise the extract of the invention and that can be used for different purposes, from medical devices to paints or surface coatings, and that are capable of inhibiting microbial biofilm formation. The polymeric structures contain the extract of the invention (ETA), which can be obtained in a dry cell-free powder form. This ETA powder of the invention can be incorporated into natural or synthetic polymers, such as silicone, rubber, polyurethane, polyester, vinyl resin, epoxy resin, alkyd resin, or other resins, maintaining its activity so that it allows to form different polymeric structures with different uses that would have anti-biofilm formation properties. For example, structures such as silicone catheters or another polymer with anti-biofilm properties can be obtained, which allows that when immersed in complex environments, such as fluids that contain human urine and bacteria, these are not contaminated by bacteria, since these would affect their ability to form biofilms, without being able to colonize the structure of the catheter, keeping it safe and aseptic.
[0028] The extract of the invention, substantially cell-free, and preferably completely cell-free, makes it possible to obtain silicone or other resin structures suitable for medical use, such as catheters, probes, braces, implants, prosthetic hearts valves, joints. prosthetics, orthopedic implants, shunts, pacemakers and defibrillators, endotracheal tubes, hemodialysis/peritoneal dialysis devices, dental implants, and intravascular catheters.
[0029] On the other hand, the extract of the invention, which is substantially cell-free, makes it possible to obtain silicone or other resin structures suitable for the food industry, such as hoses, tapes, or chambers that are in contact with food or beverages.
[0030] In another embodiment, the extract of the invention makes it possible to obtain formulations of bioactive coatings or bioactive paints for surfaces submerged in fluids of biological origin, food, contaminated water, or seawater. In these cases, the extract does not need to be cell-free.
[0031] In another embodiment, the extract of the invention makes it possible to obtain formulations of additives for water, such example that for cooling reactors, to prevents biofilm formation in pipes, hoses, and/or metal or plastic containers. Depending on the subsequent use of the water, cell-free or non-cell-free extract can be used, where the extract is added to the water in a proportion between 0.01% and 10% of the water to be treated. Next, a preferred embodiment of the proposed invention is described, without limiting the technical variants that an expert in the field may incorporate or modify, and which are within the scope of the inventive concept that we claim in this application.
Examples
[0032] 1. Obtaining the Cell-Free Extract of the Invention
[0033] i) Fermentation or Bioprocess.
[0034] The process to obtain a cell-free extract from the strain of the present invention began by growing a pure inoculum of the strain of bacterium of marine origin degrading aromatic hydrocarbons Kocuria sp, deposit RGM2414 in a condition of two liquid-solid phases using a sterile culture medium containing 1.2% w/v of biphenyl as a carbon source and inorganic salts such as: 0.2 g/L of magnesium sulfate; 0.02 g/L of calcium chloride; 1 g/L of monopotassium phosphate; 1 g/L di-ammonium hydrogen phosphate; 1 g/L of potassium nitrate and 0.05 g/L of ferric chloride, all of them dissolved in distilled water and with a final pH of between 6 and 8. Seawater filtered to a size pore of 0.22 μm. The incubation conditions for growth were shaking at 300 rpm, for 48 hours; at a temperature of 25° C.; and oxygen saturation of 15%.
[0035] ii) Obtaining Cell-Free Extract from Kocuria sp Strain MM1A2AB.
[0036] The separation of the supernatant containing molecules of interest and the cells of the strain was carried out by means of centrifugation and filtration, where the centrifugation was carried out at 5,000 g for 15 minutes; where after discarding the settled phase, the supernatant was recovered, which was filtered by 0.22 μm cut-off filter; filtered supernatant is cell-free.
[0037] iii) Recovery of Cell-Free Extract as Solid
[0038] The cell-free supernatant obtained in the previous point, called ETA liquid extract, contains molecules generated by bacterial metabolism that give the anti-biofilm formation properties to the product of the invention. The obtained filtrate was subjected to lyophilization at −80° C. and 10 Mtorr, subsequently, sieving of the obtained powder was carried out, under agitation in a horizontal position, to remove impurities and salts. Finally, the sieved powder was dried at 40° C. for 24 hours.
[0039] 2. Characterization of the Extract of the Invention
[0040] Chemical characterization was carried out on the cell-free extract produced by the bacterium Kocuria sp strain MM1A2AB, and it was determined that its composition corresponds to a mixture of organic molecules with the relative predominance of palmitic acid (C16: 0) with 39%; stearic acid (C18: 0) with 23% and Oleic acid (C18: 1) with 12% according to mass coupled gas chromatography (GC-MS) analysis. These results were complemented and corroborated in terms of qualitative analysis through Nuclear Magnetic Resonance analysis of protons (H-NMR) and carbon (C-NMR), in addition to Fourier Transform Infrared Spectroscopy (FTIR) analysis.
[0041] 3. Preparation of Structures with Inhibitory Surfaces of Microbial Biofilms by Using the Extract of the Invention
[0042] Different antimicrobial formulations based on polymers such as silicone and the cell-free supernatant extract of the strain of the invention, Kocuria (ETA) were developed to generate bio-active surfaces. According to the state of the art, as examples of comparison, formulations based on recognized antimicrobial agents were used such as: inorganic elements such as Silver (Ag), Zinc (Zn), and Copper (Cu), and organic compounds such as Saponin. To broaden the possible applications, ETA was incorporated with different polymers or resins to form structures with bioactive surfaces. The products used were vinyl resin, rubber, polyurethane, epoxy resin, alkyd resin, polyester, and alkyd resin. The incorporation of ETA was carried out by mixing and manual homogenization in a proportion of between 0.01% and 1% (w/vol). The polymerization was carried out by drying at room temperature of 20° C. for at least 72 hours. According to the application, molds were manufactured to generate tubular structures of the “catheters” type or by depositing them on a glass surface to generate a coating or “coating”.
[0043] For the evaluation tests, the structures with bio-active surfaces made based on different formulations with the cell-free bacterial extract of the present invention (ETA), were subjected to sterilization by autoclaving at 121° C. and 1 PSI for 15 minutes, and also the surfaces were treated with ultraviolet light for 5 minutes.
[0044] 4. Bacterial Biofilms Formation and Viability in the Presence of Structures with Bio-Active Surfaces Containing ETA
[0045] The state of the art and the technique indicates that biofilms formation is essential for the survival of microorganisms in a given environment. Forming biofilms creates a protective environment where microorganisms find nutrients, can reproduce, colonize, and resist the effect of antimicrobial agents. To evaluate the usefulness of the structures based on the extract produced by the present invention (ETA), the effect of the inhibition of biofilm formation and the viability of bacteria in the presence of structures with bio-active surfaces was evaluated. For this, strains of bacteria and conditions were used that allow checking the efficiency of the structures under conditions according to different applications in which they can be used.
[0046] 4.1. Evaluation of Biofilm Formation and Bacterial Viability in Catheter-Like Structures and Coatings Based on ETA.
[0047] The results of biofilm formation in the “catheters” are shown in
[0048] 4.1.1. Biofilm Formation in Catheters Formed with ETA.
[0049]
[0050] Urine has a chemical composition and physical and chemical characteristics that can favor the proliferation of pathogens. To evaluate the usefulness of the structures based on the extract produced by the present ETA invention, the condition of biofilm formation in urinary catheters was simulated, for which infectious disease model bacteria were used in a urine environment, that is, bacteria of the genus that are recognized for generating urinary tract infections in patients who are catheterized through the urinary tract. In this case, the E. coli bacteria were used and, in particular, for a viability evaluation, staining was used that allows, through the use of fluorescence microscopic techniques, to determine the viability of bacteria in a sample. The method makes it possible to determine the number of living and dead bacteria by microscopic observation. In turn, the crystal violet staining technique was used to determine the presence of biofilms on surfaces.
[0051] 4.1.2. Bacterial Viability in the Condition of Exposure to Catheters Made with ETA.
[0052] The results of the viability of E. coli in urine in time (0, 8, 16, and 24 hours) with some of the different “catheters” made based on the silicone polymer according to Table 1 are shown in the series of
[0053] 4.2. Evaluation of Biofilm Formation on Coatings Made with ETA.
[0054] For this, different surfaces of the structures were manufactured using synthetic or natural polymers. The resins used were: 1.—Vinyl Resin; 2.—Rubber; 3.—Epoxy Resin; 4.—Polyurethane Resin; 5.—Alkyd Resin; 6.—Polyester Resin. In each case, the control, which comprises only the resin, the resin mixed with the ETA extract of the invention in a concentration of 0.1% (w/vol.) was evaluated. And the resin mixed with another biocidal compound, such as zinc oxide (ZnO) in a concentration of 0.1% (w/vol.). With each mixture, a millimeter film was generated on a glass slide. The different slides containing the respective films of the coatings were exposed to ultraviolet light for 15 minutes in order to sterilize them. They were then exposed by immersion in a culture medium to the presence of a fluorescent Escherichia coli bacteria containing the plasmid pGreenTir, which contains the GFP gene. The test is outlined in
[0055]
[0056] In this way, it is possible to conclude that incorporating ETA in a coating or coating with different polymeric materials, such as vinyl, rubber, polyurethane, and polyester, for example makes it possible to inhibit the development of biofilms.
[0057] 4.3. Evaluation of the Inhibition Capacity of Biofilm Formation in Submerged Marine Environments.
[0058] Submerged marine surfaces are normally affected by the microbial biofilm formation that start the microfouling process and then finish in the macrofouling. This situation is negative when the affected areas correspond to materials or production facilities. For these reasons, numerous strategies to prevent the formation of micro and macro fouling have been developed, the most effective being those that use paints or coatings based on heavy metals. Unfortunately, these solutions are toxic for native species and represent environmental contamination, which is why there is currently a need to look for new alternatives.
[0059] It is in this scenario that the ETA generated by Kocuria of the present invention was evaluated to see if its incorporation allows the inhibition of microbial biofilms in the marine environment. The trial used the Cobetia marina strain as a model for marine biofilm-forming bacteria in the marine environment. The literature points to this microorganism as a model for studying biofilm formation. For the test, surfaces were prepared with a commercial varnish coverage containing a Kocuria culture, that is, ETA supernatant and the cells present (Kocuria Varnish) at a concentration of 0.1% (w/vol) and the same varnish containing only the culture supernatant (ETA Varnish) in a proportion of 0.1% (w/vol). The tests were carried out by immersing the surfaces in seawater containing at least 1×10 6 cells of Cobetia marina for one week. After this time, the exposed Cobetia marine bacteria were tested for biofilm formation capacity by crystal violet staining and microscopic visualization. The results are shown in