DIGITAL PCR SYSTEM AND DIGITAL PCR DROPLET FORMATION METHOD
20210220831 · 2021-07-22
Inventors
Cpc classification
C12M1/34
CHEMISTRY; METALLURGY
C12Q2563/159
CHEMISTRY; METALLURGY
B01L2200/16
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/147
PERFORMING OPERATIONS; TRANSPORTING
B01L7/52
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502784
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/041
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502715
PERFORMING OPERATIONS; TRANSPORTING
C12Q2563/159
CHEMISTRY; METALLURGY
B01L2300/0816
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
A digital PCR system includes a droplet formation assembly and a droplet ejection hole assembly, the droplet ejection hole assembly being connected below the droplet formation assembly. The droplet formation assembly includes a cover plate and at least one annular step connected to a lower surface of the cover plate, and the droplet ejection hole assembly has a plurality of droplet ejection holes. The upper surface of the droplet ejection hole assembly, the lower surface of the cover plate and the annular step jointly enclose to form a droplet formation chamber. A vaporization component is provided within the droplet ejection holes, being used for vaporizing a liquid layer of a digital PCR solution in the droplet ejection holes and quickly pushing same into droplet formation oil in the droplet formation chamber so as to form digital PCR droplets.
Claims
1. A digital PCR system, wherein, comprising: a droplet generation component, comprising a cover plate and at least one annular step connected to a lower surface of said cover plate; a droplet nozzle member, connected below the droplet generation component, and comprising a plurality of droplet nozzles, said droplet nozzles has openings on a upper surface of said droplet nozzle member, said droplet nozzles extends toward, but not through, a lower surface of said droplet nozzle member, wherein the upper surface of the droplet nozzle member, the lower surface of the cover plate and the annular step together form a droplet generation chamber, said droplet nozzles are in communication with said droplet generation chamber, and said droplet nozzles have vaporizing parts for vaporizing liquid layers of digital PCR solution inside said droplet nozzles, and rapidly pushing the vapor into droplet generating oil in said droplet generation chamber to generate digital PCR droplets.
2. The digital PCR system of claim 1, wherein, said droplet nozzle member comprises a thermal bubble print chip.
3. The digital PCR system of claim 1, wherein, a height of said annular step is less than twice the diameter of digital PCR droplets to be generated, so that the obtained digital PCR droplets spread out to form a one-layer structure in said droplet generation chamber.
4. The digital PCR system of claim 1, wherein, said droplet generation component further comprises at least one droplet generating oil injection hole, said droplet generating oil injection hole i sin communication with said droplet generation chamber through said cover plate.
5. The digital PCR system of claim 1, wherein, said droplet generation component further comprises at least one exhaust port of droplet generation chamber, said exhaust port of droplet generation chamber is in communication with said droplet generation chamber through said cover plate.
6. The digital PCR system of claim 1, wherein, said vaporizing parts are arranged on a lower surface or sidewall of said droplet nozzles.
7. The digital PCR system of claim 1, wherein, an opening shape of said droplet nozzle comprises any one selected from the group consisting of round, ellipse and polygon.
8. The digital PCR system of claim 1, wherein, said vaporizing parts comprise heating elements for vaporizing liquid layers of said digital PCR solution by heating.
9. The digital PCR system of claim 8, wherein, said heating elements comprise at least one metal layer.
10. The digital PCR system of claim 1, wherein, said PCR system further comprises at least one PCR reagent chamber for storing the digital PCR solution, said droplet nozzle member has a flow channel, and said droplet nozzles are in communication with said PCR reagent chamber through said flow channel.
11. The digital PCR system of claim 10, wherein, said flow channel comprise at least one main flow channel and a plurality of branch flow channels connecting to said main flow channel, and each of said droplet nozzles is connected to one of said branch flow channels, respectively.
12. The digital PCR system of claim 10, wherein, said digital PCR system further comprises a substrate, said PCR reagent chamber has an opening on the upper surface of said substrate, and extends toward, but not through, the lower surface of said substrate, and said droplet nozzle member is connected to the upper surface of said substrate and covers the opening of said PCR reagent chamber.
13. The digital PCR system of claim 12, wherein, at least one digital PCR solution injection hole is provided on a lower surface of said substrate, said digital PCR solution injection hole being connected to said PCR reagent chamber.
14. The digital PCR system of claim 12, wherein, at least one exhaust port of the PCR reagent chamber is provided on a lower surface of said substrate, said exhaust port of PCR reagent chamber is in communication with said PCR reagent chamber.
15. The digital PCR system of claim 12, wherein, said digital PCR system further comprises a flexible circuit board, said flexible circuit board is connected above the substrate, said flexible circuit board has a through hole for accommodating said droplet nozzle member, a plurality of first connection pads and second connection pads being arranged on the surface of said flexible circuit board, and said droplet nozzle member being connected to said first connection pads by conducting wires.
16. The digital PCR system of claim 15, wherein, said flexible circuit board is connected to said substrate by gluing.
17. The digital PCR system of claim 16, wherein, a cross-sectional area of said droplet generation component is larger than the area of the opening of said PCR reagent chamber, at least one channel for preventing glue from flowing to said droplet nozzle member is provided on a region of said substrate surface covered by said droplet nozzle member.
18. The digital PCR system of claim 16, wherein, an annular channel is provided on a surface of said substrate for preventing glue from flowing to said droplet nozzle member, said annular channel is arranged around said droplet nozzle member.
19. The digital PCR system of claim 15, wherein, at least two positioning through holes are arranged in said flexible circuit board, positioning bumps at positions corresponding to the positioning holes are provided on the surface of said substrate.
20. The digital PCR system of claim 12, wherein, said digital PCR system further comprises a controller, said controller comprising a controller housing and a controller circuit board arranged in said controller housing, said controller housing having a support for placing said substrate, a plurality of conductive pins for circuit connection connected to said circuit connection board of the controller are arranged on the surface of said support, said conductive pins for circuit connection is at positions corresponding to said second connection pads.
21-36. (canceled)
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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LIST OF REFERRINGENCE NUMERALS
[0084] 1 droplet generation component [0085] 2 cover plate [0086] 3 annular step [0087] 4 droplet nozzle member [0088] 5 droplet nozzle [0089] 6 droplet generating oil injection hole [0090] 7 exhaust port of droplet generation chamber [0091] 8 PCR reagent chamber [0092] 9 main flow channel [0093] 10 branch flow channel [0094] 11 substrate [0095] 12 digital PCR solution injection hole [0096] 13 exhaust port of PCR reagent chamber [0097] 14 flexible circuit board [0098] 15 through hole [0099] 16 housing supporting structure [0100] 17 second connection pad [0101] 18 channel [0102] 19 annular channel [0103] 20 positioning through hole [0104] 21 positioning bump [0105] 22 controller [0106] 23 controller housing [0107] 24 support [0108] 25 conductive pin for circuit connection [0109] 26 position-limiting slot [0110] 27, 29 position-limiting part [0111] 28 position-limiting through hole [0112] 30 cover [0113] 31 external cooling fan [0114] 32 sunken platform [0115] 33 protrusion [0116] 34 vent [0117] 35 connection point of circuit board
DETAILED DESCRIPTION OF THE INVENTION
[0118] Hereinafter, the embodiments of the present invention will be illustrated with specific examples, and other advantages and benefits of the present invention can be readily understood by those skilled in the art as disclosed in this specification. The present invention may also be implemented or applied with various other specific embodiments, and the details in this specification may be modified or altered in various ways based on different points of view and applications without departing from the spirit of the present invention.
[0119] Referring to
Embodiment 1
[0120] The present invention provides a digital PCR system, as shown in
[0121] Referring to
[0122] As an example, the droplet nozzle member 4 comprises thermal bubble print chips. Thermal bubble print technique is a major technique in the field of printers, the basic principle of the thermal bubble print technique is to eject ink droplets by heating ink. In the present invention, droplet nozzle member 4 may use existing thermal bubble print chips.
[0123] In the present embodiment, the droplet nozzle member 4 is connected to flexible circuit board 14. Referring to
[0124] Specifically, a through hole 15 is provided in flexible circuit board 14 for accommodating droplet nozzle member 4, a plurality of the first connection pads (not shown) and the second connection pads 17 are arranged on the surface of the flexible circuit board 14, the droplet nozzle member 4 is connected to the first connection pads by conducting wires, and he droplet nozzle member 4 is connected to an external controller via flexible circuit board 14. The droplet nozzle member 4 is connected to the first connection pads by using a standard Wire Bond process.
[0125] Specifically, as shown in
[0126] Referring to
[0127] Referring to
[0128] Specifically, the droplet generation component 1 comprises a cover plate 2 and at least one annular step 3 connected to the lower surface of the cover plate 2. It should be noted that the annular shape herein represents not only a circular shape. For example, in the embodiment, the outer contour of the annular step 3 is rectangular and the inner contour of the annular step 3 is rounded rectangular. In other embodiments, annular step 3 may also be in other shapes as long as two ends of the step are connected, and the scope of protection of the present invention should not be unduly limited herein.
[0129] Specifically, the upper surface of droplet nozzle member 4, the lower surface of cover plate 2 and the annular step 3 together form a droplet generation chamber, the droplet nozzles 5 is in communication with the droplet generation chamber.
[0130] As shown in
[0131] As an example, the vaporizing part 34 is arranged on the lower surface or sidewall of droplet nozzle 5, and the vaporizing part 34 comprises a heating element for vaporizing the liquid layers of the digital PCR solution by heating. In the embodiment, the heating element comprises a heating plate, which may either a single metal layer or a composite multilayer metal layer. The shape of vaporizing part 34 comprises, but is not limited to, a round or square shape, and the area thereof may be 0.5 to 2 times the area of the bottom of the droplet nozzle 5. In other embodiments, the vaporizing part 34 may also be arranged on the sidewall of droplet nozzle 5, and the scope of protection of the present invention should not be unduly limited herein.
[0132] In the embodiment, the height of annular step 3 is less than twice the diameter of the digital PCR droplets to be generated, so that the obtained digital PCR droplets spread out to form a one-layer structure in the droplet generation chamber.
[0133] Specifically, as shown in
[0134] As shown in
[0135] As an example, the flow channels comprise at least one main flow channel 9 and a plurality of branch flow channels 10 connected to the main flow channel 9, and each of the droplet nozzles 5 is connected to one of branch flow channels 10, respectively.
[0136] As an example, materials for constructing the flow channels and the droplet nozzles 5 comprise, but are not limited to, silicon, polymers, photoresists, etc.
[0137] Specifically, as shown in
[0138] Referring to
[0139] Specifically, the PCR reagent chamber 8 has an opening on the upper surface of the substrate 11, and extends towards, but not through, the lower surface of the substrate 11. The droplet nozzle member 4 is connected to the upper surface of the substrate 11, and covers the opening of the PCR reagent chamber.
[0140] Specifically, at least one digital PCR solution injection hole 12 is provided on the lower surface of the substrate 11, and digital PCR solution injection hole 12 is in communication with the PCR reagent chamber 8. At least one exhaust port of the PCR reagent chamber 13 is provided on the lower surface of the substrate, and the exhaust port of the PCR reagent chamber 13 is connected to the PCR reagent chamber 8.
[0141] Specifically, flexible circuit board 14 is connected above the substrate 11. As an example, the flexible circuit board is fixed on the substrate 11 by gluing (e.g. with double-sided tapes or glue). In the embodiment, the cross-sectional area of droplet nozzle member 4 is larger than the area of the opening of the PCR reagent chamber 8. As shown in
[0142] As an example, as shown in
[0143] In the present embodiment, a sunken platform 32 is provided on the surface of substrate 11 for accommodating the flexible circuit board, and arc-shaped extended spaces are provided at the four corners of sunken platform 32, and the protrusions 33 around the sunken platform 32 function as a means for positioning when the flexible circuit board is glued to the surface of the sunken platform 32.
[0144] As shown in
[0145] Specifically, the digital PCR system further comprises a controller. Referring to
[0146] Referring to
[0147] Referring to
[0148] Specifically, as shown in
[0149] Specifically, as shown in
[0150] Specifically, the digital PCR system further comprises a heating module for heating the droplet generation chamber, in order to provide reaction conditions at a specific temperature. As an example, the heating module is integrated in the droplet nozzle member 4.
[0151] Specifically, the digital PCR system also comprises a temperature sensor for measuring the temperature in the droplet generation chamber, in order to monitor the temperature in the droplet generation chamber. As an example, the temperature sensor is integrated in droplet nozzle member 4.
[0152] Specifically, the digital PCR system further comprises an external cooling fan for cooling the droplet generation chamber. As an example, the external cooling fan is arranged in controller housing 23. Referring to
[0153] Specifically, the external cooling fan may also be replaced by an external thermoelectric cooler. A thermoelectric cooler (TEC) is produced based on the Peltier effect of semiconductor materials. The so-called Peltier effect is the phenomenon that when DC current is applied across a couple composed of two semiconductor materials, one side absorbs heat and the other side emits heat. The heavily doped N-type and P-type bismuth tellurides are mainly used as semiconductor materials for TECs, and the bismuth telluride elements are electrically connected in series and thermally in parallel. TECs comprise a number of P-type and N-type pairs (groups) that are connected together by electrodes and sandwiched between two ceramic electrodes. When electric current flows through a TEC, heat generated by the current is transferred from one side of the TEC to the other, thereby creating a “hot” side and a “cold” side in the TEC, which is heating and cooling principle of TEC.
[0154] Furthermore, the digital PCR system further comprises an optical detection system for PCR signal collection and detection without transferring samples. The main parts of the optical system comprise: a fluorescent light source, a bright-field light source, control circuits, a lens group for optical amplification, a fluorescent filter, a CCD camera, a slide system for moving lens, and a housing for shading. The photographic area of the optical system is the entire area of the cover plate. It may be one shot or multiple shots merged together.
[0155] The digital PCR system of the present invention can be used for generating digital PCR droplets. The rapid droplet generation relies on the instantaneous vaporization of liquid layers with a thickness in nanometer-scale by using vaporizing parts in droplet nozzles, so the digital PCR solution inside the droplet nozzles is rapidly pushed into droplet generating oil to generate digital PCR droplets. Compared with the generation rate of 100 droplets per second on the market, a droplet generation rate of more than 1000 drops per second can be achieved by the droplet generation technique of the present invention. Compared with the method by which the oil and water phases move together to generate droplets, the oil phase in the technical solution of the present invention is static, so the consumption of oil is greatly reduced, thus reducing the amount of oil by about 50%. The technical solution of the present invention has an efficient utilization rate of digital PCR oil. Because of the precise temperature control integrated on the silicon-based droplet nozzle member or thermal bubble printing chips, in situ temperature-controlled PCR is realized. And the integrated optical system allows detection without transferring samples. This not only reduces the operation time, but also improves the accuracy of detection by reducing human error. In situ digital PCR droplets may spread out to form a layer.
Embodiment 2
[0156] The present invention also provides a method for generating digital PCR droplets, comprising the following steps of: the digital PCR solution is vaporized by using vaporizing parts and rapidly pushed into droplet generating oil to generate digital PCR droplets.
[0157] As an example, the thermal bubble technique is used for high-speed digital PCR droplet generation. The vaporizing parts comprise heating elements for vaporizing the liquid layers of the digital PCR solution by heating.
[0158] Specifically, the generation rate of the digital PCR droplets is controlled by controlling the heating time, the number of heatings and the time intervals of heating of the heating element. The digital PCR droplet generation at a rate of more than 1000 droplets per second can be achieved by the method for generating digital PCR droplets of the present invention.
[0159] As an example, the method for generating digital PCR droplets comprises the following steps of:
[0160] S1: injecting digital PCR solution into a PCR reagent chamber, so that the digital PCR solution enters the droplet nozzles in communication with the PCR reagent chamber to form liquid layers of the digital PCR solution;
[0161] S2: adding droplet generating oil into a droplet generation chamber;
[0162] S3: the liquid layers are vaporized by using the vaporizing parts and rapidly pushed into the droplet generating oil in the droplet generation chamber to generate the digital PCR droplets.
[0163] Specifically, the thicknesses of the liquid layers are in nanometer scale, and larger than 0.2 nm. In the embodiment, the thickness of the liquid layers is in the range from 0.2 nm to 30,000 nm.
[0164] Specifically, the height of the droplet generation chamber is less than twice the diameter of digital PCR droplets to be generated, so that the obtained digital PCR droplets spread out to form a layer in the droplet generation chamber.
[0165] Specifically, after the digital PCR solution in the PCR reagent chamber is completely pushed into the droplet generation chamber to generate digital PCR droplets, the PCR reagent chamber is filled with droplet generating oil, so that the PCR reagent chamber is kept filled to prevent the generated droplets from returning to the PCR reagent chamber. Subsequently, seals can be used to seal the droplet generating oil injection hole and the exhaust port of the droplet generation chamber on the wall of the droplet generation chamber, and the digital PCR solution injection hole and the exhaust port of the PCR reagent chamber on the wall of the PCR reagent chamber. The seals comprise, but are not limited to, rubber plugs, parafilm, rubber rings, gasket seals, etc. The seals may be made of soft plastic materials such as rubber, PDMS.
[0166] Specifically, after the above-mentioned sealing, in situ temperature-controlled PCR can be realized by using the integrated heating module and the temperature sensor in the droplet nozzle member (which may be thermal bubble print chips) and an external fan to control the rise or fall of temperature required for PCR. Thermoelectric cooling film may also replace the fan for cooling based on the specific temperature requirements.
[0167] Specifically, the integrated optical system may also be used to collect and detect PCR signals without transferring the sample.
[0168] Referring to
[0169] After generating droplets by using standard digital PCR, the positive droplets with fluorescent signals can be observed after 40 cycles of in situ conventional PCR temperature-controlled reaction. Referring to
[0170] All of digital PCR biochemical reagents can be utilized when using the digital PCR system and the method for generating digital PCR droplets of the present invention. The concentrations of many biomarker molecules in the blood are very low (e.g., circulating tumor DNA has only 3 DNA molecules per 2 ml of blood), but the digital PCR system and the method for generating digital PCR droplets of the present invention have the characteristic that the number of droplets generated is not limited by the amount of oil used, and have the feature of high speed, thus enabling the application of digital PCR in such detection.
[0171] In conclusion, thermal bubble technique is used in the digital PCR system and the method for generating digital PCR droplets of the present invention for high-speed digital PCR droplet generation. The rapid droplet generation relies on the instantaneous heating and vaporization of liquid layers with a thickness in nanometer-scale by using vaporizing parts in droplet nozzles, so digital PCR solution inside the droplet nozzles is quickly pushed into droplet generating oil to generate digital PCR droplets. Compared with the generation speed of 100 droplets per second on the market, a droplet generation speed of more than 1000 drops per second can be achieved by the droplet generation technique of the present invention. Compared with the method by which the oil and water phases move together to generate droplets, the oil phase in the technical solution of the present invention is static, so the consumption of oil is greatly reduced, reducing the amount of oil by about 50%. Because of the precise temperature control integrated on the silicon-based droplet nozzle member or thermal bubble printing chips, in situ temperature-controlled PCR is realized. And the integrated optical system allows detection without transferring samples. This not only reduces the operation time, but also improves the accuracy of detection by reducing human error. In situ digital PCR droplets may spread out to form a layer. Therefore, the present invention effectively overcomes various shortcomings in the prior art and has a high utility value in industry.
[0172] The above-mentioned embodiments only illustrate the principle and efficacy of the present invention, and are not intended to limit the present invention. The above embodiments may be modified or altered by any person skilled in the art without departing from the spirit and scope of the present invention. Therefore, all equivalent modifications or alterations made by those with ordinary knowledge in the technical field, without departing from the spirit and technical ideas disclosed in the present invention, should still be covered by the claims of the present invention.