Immunogenic compositions and uses thereof
11839651 · 2023-12-12
Assignee
Inventors
Cpc classification
A61K39/39
HUMAN NECESSITIES
A61K2039/57
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
A61K39/39
HUMAN NECESSITIES
A61K39/00
HUMAN NECESSITIES
Abstract
Compositions capable of enhancing and/or eliciting an immune response in a subject and methods of using the compositions. The compositions are capable of enhancing an IgA immune response and/or an IgG immune response and comprise an agent capable of reducing the level of binding of ATP to a P2X7 receptor to a subject. The compositions are for oral administration.
Claims
1. A method of enhancing and/or eliciting an immune response in a subject, the method comprising administering a composition capable of enhancing an IgA immune response and/or an IgG immune response comprising an ATP-hydrolysing enzyme and an immunogen to the subject, wherein the composition is administered to the subject orally, and wherein the immunogen is a bacterial antigen, a parasitic antigen or a viral antigen capable of eliciting an immune response against a gastrointestinal pathogen or a mucosally transmitted systemic pathogen.
2. The method of claim 1, where the ATP-hydrolysing enzyme is apyrase.
3. The method of claim 2, wherein the apyrase is Shigella flexneri apyrase.
4. The method of claim 1, wherein the immunogen is capable of eliciting an immune response against a pathogen selected from the group consisting of Vibrio cholerae, Clostridium difficile, Clostridium botulinum, Escherichia coli, Shigella boydii, Shigella dysenteriae, Shigella flexneri, Shigella sonnei, Salmonella enterica, Salmonella bognori, Ascaris lumbricoides, Giardia lamblia, Entamoeba histolytica, poliovirus, rotavirus, Adenovirus, Hepatitis A and human immunodeficiency virus.
5. The method of claim 1, wherein the composition comprises a recombinant bacterium comprising a nucleic acid encoding the ATP-hydrolysing enzyme.
6. The method of claim 5, wherein the recombinant bacterium further comprises a nucleic acid encoding the immunogen.
7. The method of claim 5, wherein the recombinant bacterium is Escherichia coli or attenuated Salmonella enterica.
8. The method of claim 1, wherein the composition comprises a bacteriophage comprising a nucleic acid encoding the ATP-hydrolyzing enzyme.
9. The method of claim 8, wherein the bacteriophage further comprises a nucleic acid encoding the immunogen.
10. The method of claim 1, wherein the composition comprises a viral vector comprising a nucleic acid encoding the ATP-hydrolyzing enzyme.
11. The method of claim 10, wherein the viral vector further comprises a nucleic acid encoding the immunogen.
12. The method of claim 1, wherein the IgA immune response and/or the IgG immune response is a mucosal response.
13. The method of claim 1, wherein the IgA immune response and/or the IgG immune response is in the gut.
14. The method of claim 1, wherein the composition is formulated for administration in a nanocapsule.
Description
BRIEF DESCRIPTION OF THE FIGURES
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MODES FOR CARRYING OUT THE INVENTION
(15) Mice and Administration of Antibiotics
(16) C57BL/6J and p2rx7.sup.−/− (B6.129P2-P2rx7tm1Gab/J, Jackson Lab) mice were bred in specific pathogen-free (spf) facility at Institute for Research in Biomedicine, Bellinzona, Switzerland. C57BL/6J germ free mice were maintained in flexible film isolators at the Clean Animal Facility, University of Bern, Switzerland. For antibiotic treatment, mice were given the following antibiotic associations in drinking water for 4 wk: ampicillin 1 g/l and chloramphenicol 0.5 g/l (bactericidal association active on endogenous flora but not pBAD28-transformed E. coli) or Stretpomycin 1 g/l, Penicillin 1 g/l and Vancomycin 0.5 g/l (bactericidal on both endogenous and pBAD28-transformed bacteria).
(17) Quantification of ATP
(18) For quantification of ileal ATP, intestinal content was collected by lavage with 10 ml of intestinal wash buffer (PBS, 0.5M EDTA, Soybean trypsin inhibitor, PMSF), spun at 14′000 rpm in a sterile tube, filtered (0.22 μm) to remove any bacteria-sized contaminants and immediately frozen in dry ice. ATP concentration in the intestinal washes was multiplied for the dilution factor to obtain the actual endoluminal ATP concentration. Bile and urine were collected from gallbladder and bladder through puncture with a 34G needle. For quantification of ATP secreted by commensal bacteria in culture, intestinal content was plated on BHI agar and cultured for 16 h at 37° C. Single colonies were picked and cultured in BHI broth. Medium from 16 h cultures of single colonies was centrifuged (15,000×g), the supernatant was collected and filtered (0.22 μm). For quantification of ATP in circulatory districts, inferior caval, jugular and portal veins, and heart were exposed and blood collected through puncture with a 34G needle. Blood was centrifuged at 1000×g and the serum collected and centrifuged a second time at 1000×g. Emolysed sera were discharged. The extracellular ATP concentration was evaluated by bioluminescence assay with recombinant firefly luciferase and its substrate D-luciferin according to the manufacturer's protocol.
(19) Treatment of Bacterial Culture with Antibiotics
(20) Ampicillin (2.5 μg/ml), vancomycin (1 μg/ml), metronidazole (1 μg/ml) were added to intestinal bacterial culture at 0.5 OD. Supernatants from bacterial cultures were collected 3, 4 and 5 h after addition of antibiotics, spun at 14′000 rpm in a sterile tube and filtered (0.22 μm). ATP concentration was evaluated by bioluminescence assay (see above).
(21) Antibodies and Flow Cytometry
(22) The following mAbs were purchased from BD Biosciences: biotin conjugated anti-CXCR5 (clone: 2G8, Cat.#: 551960) and phycoerythrin (PE) conjugated anti-ICOS (clone: 7E.17G9, Cat.#: 552146). PE-Cy7 conjugated anti-CD4 (Clone:GK1.5, Cat.# 100422) and APC conjugated streptavidin (Cat.#: 405207) were from Biolegend. Percp-eFluor710 conjugated anti-CD3 (Clone: 17A2, Cat.#: 46-0032-80) was obtained from eBioscience. Annexin V staining was performed in Biolegend Annexin V binding buffer (Cat.#422201) (1×10.sup.6 cells/ml) following the manufacturer's protocol. Data were analysed using FlowJo software (TreeStar, Ashland, Oreg.) or FACS Diva software (BD Biosciences).
(23) Plasmids
(24) Full length phoN2::HA fusion of S. flexneri was cloned into the polylinker site of plasmid pBAD28 (ATCC 8739387402), under the control of the P.sub.BAD L-arabinose inducible promoter, generating plasmid pHND10 (ref. 8).
(25) Oral Immunization with E. coli and Flow Cytometry for Detection of Anti-E. coli IgA
(26) E. coli transformed with pBAD28 or pHND10 were aseptically inoculated into LB medium containing arabinose (0.3%) and ampicillin (100 μg/ml), and incubated at 37° C. for 18 h. Bacteria were harvested by centrifugation, washed in sterile PBS and concentrated to a density of 2×10.sup.10 CFUs/ml in PBS. Bacterial suspensions (10.sup.10 CFUs in 300 μl) were gavaged into the stomach. The procedure was repeated every 3 day for 3 weeks and mice were sacrificed at day 28. Intestinal contents were collected by lavages with 5 ml of intestinal wash buffer (PBS, 0.5M EDTA, Soybean trypsin inhibitor, PMSF), spun at 14′000 rpm in a sterile tube and filtered (0.22 μm) to remove any bacteria-sized contaminants.sup.4. For flow cytometry analysis of anti-E. coli IgA, 3 ml of LB broth were inoculated with single colonies and cultured overnight at 37° C. Cultures were subsequently centrifuged (3 min at 7000 rpm), washed 3 times with sterile-filtered PBS, 2% BSA, 0.005% NaN.sub.3 and resuspended at a density of approximately 10.sup.7 bacteria per ml. Intestinal contents and bacteria were then mixed and incubated at 4° C. for 1 h. Bacteria were washed twice, before being resuspended in monoclonal FITC-anti-mouse IgA (Southern Biotech, Cat.#: 1040-02, working dilution 1:200). After 1 h incubation bacteria were washed twice and resuspended in 2% paraformaldehyde in PBS for acquisition on a FACSCanto using FSC and SSC parameters in logarithmic mode. For each animal analyzed, ELISA was used to determine the total IgA concentration in an undiluted aliquot of the same intestinal wash sample used for surface staining of E. coli. This value was used to calculate the total IgA concentration at each dilution of intestinal wash used for flow cytometry of E. coli and was plotted against the geometric mean fluorescence obtained in flow cytometry.
(27) Oral Immunization with Attenuated Salmonella typhimurium and Flow Cytometry for Detection of Anti-Salmonella typhimurium IgA
(28) Avirulent gyrA1816 Δcya1 Δcrp1 S. typhimurium (which have mutations in cya and crp genes and are incapable of producing functional adenylate cyclase as well as cyclic AMP receptor protein) (ATCC® 53648™) transformed with pBAD28 or pHND10 were aseptically inoculated into LB medium containing arabinose (0.05%) and chloramphenicol (30 μg/ml), and incubated at 37° C. for 18 hours. Bacteria were harvested by centrifugation, washed in sterile PBS and concentrated to a density of 5×10.sup.10 CFU/ml in PBS. Bacterial suspensions (5×10.sup.9 CFUs in 100 μl) were gavaged into the stomach of normally colonized C57BL/6 mice every three days for three times. Arabinose 0.05% was added in the drinking water to ensure maximal expression of apyrase by pHND10 transformants. One month after the last immunization, mice were tested for anti-Salmonella secretory IgA as described above for E. coli colonized mice.
Example 1
E. coli in Normally Colonized Mice
(29) Detection of Extracellular ATP Levels Produced by Commensals
(30) Extracellular ATP had previously been detected in the supernatant of in vitro cultured intestinal commensals derived from murine faeces.sup.5,6. In order to address whether the metabolic activity of commensals contributed to the level of intestinal ATP, the levels of ATP in the small intestine was observed in mice from a specific pathogen free facility and in entirely germ free mice. Micromolar concentrations of ATP were detected in the specific pathogen free mice, whereas ATP was barely detectable in the entirely bacteria free mice. It was found that fluids such as urine, bile and serum which originate from sterile (or almost sterile) epithelial or endothelial organs did not demonstrate a substantial amount of endoluminal ATP (see
(31) To test whether bacteria present in the small intestine release ATP, cultures of aerobic and anaerobic colonies isolated from murine ilea were tested for ATP in the medium in comparison to cell growth.
(32) The inventors also investigated whether bacterial cell death results in an additional increase in extracellular ATP due to release of ATP during cell lysis. Ileal bacterial cell cultures were treated with vancomycin, ampicillin and metronidazole (VAM). Cell death was monitored using DAPI (4′,6-diamidino-2-phenylindole) staining and membrane damage was monitored using DIBAC (bis-(1,3-dibutylbarbituric acid) trimethine oxonol) staining in flow cytometry as described in reference 7.
(33) Epithelial Permeability to ATP
(34) In order to assess epithelial permeability to ATP in the small intestine, mice were gavaged daily with ATPγS (a non-hydrolysable analogue of ATP). As Tfh cells are sensitive to extracellular ATP via P2X7 the inventors analysed Tfh cell recovery in Peyer's patches two weeks after treatment. Administration of ATPγS resulted in significant reduction of Tfh cells in wild type mice but not in p2rx7.sup.−/− mice. This finding suggests that luminal ATP can permeate Peyer's patches and can affect the abundance of Tfh cells via P2X7.
(35) Analysis of ATP concentrations in blood collected from portal or jugular veins, vena cava and heart revealed a 30-50 fold increase in ATP concentration in the blood from the portal vein compared to the other samples (see
(36) Reducing Endoluminal ATP Levels Using Apyrase
(37) The inventors used a recombinant E. coli K-12 strain expressing pHND10 (a pBAD28-based recombinant plasmid carrying the phoN2::HA fusion.sup.8 which encodes a periplasmic apyrase (ATP-diphosphohydrolase) from Shigella flexneri.sup.9.
(38) Extracellular ATP released concomitantly with E. coli growth was undetectable in bacteria carrying pHND10 as shown in
(39) Enhancement of Antigen Specific Immune Responses
(40) The enhancement of the anti-E. coli IgA response using PhoN2 was demonstrated by the inventors. C57BI/6 mice were gavaged with E. coli harbouring the pHND10 plasmid and the pBAD28 plasmid (which does not encode the apyrase PhoN2). The level of E. coli specific IgA was significantly increased in mice gavaged with bacteria transfected with pHND10 (which encodes apyrase). Therefore ATP released by bacteria limits the development of a high affinity IgA response and reducing ATP levels by expressing apyrase as demonstrated allows a high affinity IgA response to occur as shown in
(41) The inventors addressed the role of apyrase as an adjuvant for high-affinity IgA response by measuring endoluminal ATP and anti-E. coli IgA after oral administration of chloramphenicol and ampicillin (CA; which are active on endogenous flora but not pBAD28-transformed E. coli) or penicillin/streptomycin/vancomycin (PSV; which are bactericidal on both endogenous and pBAD28 transformed bacteria). Anti-E. coli IgA in mice gavaged with pBAD28 transformed bacteria was reduced by PSV but not CA administration concomitantly with an increase in endoluminal ATP. Neither endoluminal ATP nor anti-E. coli IgA response were influenced by CA or PSV in mice colonized with pHND10 harboring bacteria (see
(42) The finding explained above was found to be specific to the bacterium in which the apyrase was delivered, i.e. E. coli. IgA antibodies specific for other bacterial species were tested for, and no increase was recorded when pHND10 harbouring E. coli were administered to the mice compared to when E. coli harbouring pBAD28 were administered as shown in
(43) Therefore, the data provided herein show that compositions comprising apyrase or another agent which is capable of reducing the level of binding of ATP to the P2X7 receptor can increase the specific IgA response to an immunogen included in the composition. Therefore, the compositions of the invention may be useful as vaccines.
Example 2
E. coli in Germ-Free, Monocolonized Mice
(44) The inventors monocolonized germ-free mice in order to demonstrate the effect of apyrase on endoluminal ATP levels, Tfh and germinal centre cell number and anti-E. coli IgA levels in a controlled experimental setting, in which the same amount of bacterial stimuli were present in the gut apart from extracellular ATP.
(45) Reducing Endoluminal ATP in the Presence of Apyrase in Monocolonized Mice
(46) Germ-free mice were monoclolonized by E. coli transformed with pHND10 or pBAD28.
(47) Number of Tfh Cells and Germinal Centre B Cells are Increased in the Presence of Apyrase in Monocolonized Mice
(48) Germ-free mice monocolonized with E. coli transformed with either pHND10 or pBAD28 were tested for number of Tfh cells (CD3.sup.+CD4.sup.+CXCR5.sup.+ICOS.sup.+) and number of germinal centre B cells (CD19.sup.+Fas.sup.+PNA.sup.+) by enumerating total cells in the Peyer's patches and extrapolating relative abundances of Tfh and GC B cells by their frequencies at FACS.
(49) This finding is consistent with endoluminal ATP having a role in regulating Tfh cell and germinal centre B cells in the Peyer's patches of the small intestine. The presence of apyrase expressed in the pHND10 harbouring E. coli reduces levels of endoluminal ATP, which prevents ATP from reducing the number of Tfh cells and germinal centre cells.
(50) Anti-E. coli IgA is Increased in the Presence of Apyrase in Monocolonized Mice
(51) Germ-free mice monocolonized with E. coli transformed with either pHND10 or pBAD28 were tested for anti-E. coli IgA as described above.
(52) This finding confirms that the IgA produced as a result of the presence of apyrase is specific to an immunogen administered simultaneously with the apyrase.
Example 3
Attenuated Salmonella typhimurium in Normally Colonized Mice
(53) Generating Salmonella typhimurium which Expresses Apyrase
(54) To address whether apyrase expression in live attenuated Salmonella typhimurium could increase the specific IgA response and confer enhanced protection from infection by a virulent strain, the inventors used avirulent gyrA1816 Δcya1 Δcrp1 Salmonella typhimurium (ATCC® 53648™) (which includes mutations in cya and crp genes and is incapable of producing functional adenylate cyclase as well as cyclic AMP receptor protein) as a model vaccine. The inventors transformed S. typhimurium , with either pBAD28 or pHND10, as described above. As observed in E. coli,
(55) Anti-S. typhimurium IgA is Increased in the Presence of Apyrase
(56) Normally colonized mice were immunized by gavage every three days for three times with 5×10.sup.9 avirulent S. typhimurium transformed with either pHND10 or pBAD28. Arabinose 0.05% was added to the animals' drinking water to ensure maximal expression of apyrase by pHND10 transformants during immunization. After one month from the last immunization mice were tested for anti-Salmonella secretory IgA as described above for E. coli colonized mice.
(57) This finding confirms that the IgA produced as a result of the presence of apyrase is specific to the immunogen administered simultaneously with the apyrase.
(58) Immunization with Attenuated S. typhimurium Carrying Apyrase Protects against Virulent S. typhimurium
(59) Colonization resistance by commensal flora limits infection with virulent S. typhimurium . In contrast, pretreatment of mice with streptomycin allows efficient development of enterocolitis and typhoid. Immunization of mice with attenuated S. typhimurium transformed with either pHND10 or pBAD28 was tested for its ability to protect against infection by 5×10.sup.7 virulent Salmonella (s. Tm.sup.wt: SB300 S. enterica serovar Thyphimurium SL1344 (wildtype) resistant to streptomycin, as disclosed in reference 10) upon streptomycin administration at one month from the last immunization. Infection of mice that have been previously immunized with avirulent Salmonella bearing pHND10 resulted in significantly reduced recovery of virulent Salmonella from Peyer's patches and barely detectable levels of virulent Salmonella in mesenteric lymph nodes (MLNs), spleen and liver when compared with mice immunized with pBAD28 transformants or control non-immunized mice at 48 h post-infection (see
(60) This is consistent with the decrease in pathophysiological changes following infection observed in mice immunized with pHND10 containing attenuated S. typhimurium compared with mice immunized with pBAD28 containing S. typhimurium or non-immunized mice.
(61) A further way in which the inventors demonstrated that immunization with pHND10 containing attenuated S. typhimurium resulted in protection from virulent Salmonella was by monitoring the extent to which infection with virulent Salmonella causes leaking of the gut endothelial barrier. This leakage was monitored by analyzing the permeability of the gut to dextran administered to the mice by gavage. To this end, C57BL/6J mice immunized with avirulent Salmonella were orally infected with 5×10.sup.7 virulent Salmonella and gavaged with 5 mg of 70 KDa FITC-dextran. After 4 hours peripheral blood was collected and tested for the presence of the fluorophore in the serum. From each value, background fluorescence value of serum collected from untreated mice was subtracted.
(62) Mice that have been effectively protected from the effects of virulent Salmonella infection do not display gut permeability to dextran therefore sera from such mice contain less dextran that mice suffering from the effects of virulent Salmonella infection (i.e. which have been less efficiently protected).
(63)
(64) Adaptive IgAs are Responsible for the Protection Observed in the Presence of Apyrase
(65) The inventors immunized recombinase-activating gene-1 (Rag-1) deficient mice with attenuated S. typhimurium carrying either pBAD28 or pHND10, as described above for C57BL/6 mice, in order to observe the effect that such immunization had on mice unable to produce mature B or T lymphocytes. The presence of apyrase (in mice immunized with attenuated S. typhimurium carrying pHND10) did not result in enhanced protection from infection with virulent Salmonella as shown in
(66) It will be understood that the invention has been described by way of example only and modifications may be made whilst remaining within the scope and spirit of the invention.
Example 4
Treatment of Mice with an Apyrase Composition in the Absence of an Immunogen in the Form of a Bacterial Carrier
(67) Extraction of Periplasmic Proteins
(68) E. coli transformed with pBAD28 or pHND10 were aseptically inoculated into LB medium containing arabinose (0.3%) and ampicillin (100 μg/ml), and incubated at 37° C. for 18 hours. Bacteria (10.sup.11) were spun at 6000 rpm for 20 min at 4° C., washed twice in PBS, resuspended in 1 ml of 30 mM Tris-HCl (pH 8.0), 4 mM EDTA, 1 mM PMSF, 20% sucrose and 0.5 mg/ml lysozime and incubated for 3 min at 30° C.; then, MgCl.sub.2 was added at a final concentration of 10 mM and bacteria incubated for 1 h a 30° C. Bacteria suspension was centrifuged at 10′000 rpm for 10 min at 4° C. and 100 μl supernatant (i.e. periplasmic proteins) administered to C57BL/6 mice by gavage.
(69) Fecal IgA Increased in Mice Treated with Periplasmic Proteins from Apyrase Bearing E. coli
(70) Fecal IgA concentrations were measured in mice that were either untreated or gavaged daily for 15 days with periplasmic proteins from arabinose induced pBAD28 (empty vector) or pHND10 (apyrase bearing vector) E. coli transformants.
(71)
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