METHOD, DEVICE AND SYSTEM FOR DETERMINING THE CONCENTRATION OF ANALYTES IN A SAMPLE
20210293803 · 2021-09-23
Assignee
Inventors
- Mohiudeen Azhar (Bangalore, IN)
- Kalpesh Mehta (Singapore, SG)
- Ragavendar MS (Flanders, NJ, US)
- Sudipa Galgalkar (Bangalore, IN)
- Ishita Chakraborty (Bangalore, IN)
Cpc classification
G01N21/31
PHYSICS
G01N33/72
PHYSICS
G01N33/54373
PHYSICS
International classification
G01N33/543
PHYSICS
G01N21/31
PHYSICS
Abstract
A method, device and a system of determining a concentration of one or more analytes in a sample is disclosed. In one aspect of the invention, the method includes introducing the sample through a channel The method further includes illuminating the sample with light having varying wavelengths. Additionally, the method includes obtaining an image of the illuminated sample at each of the wavelength. Furthermore, the method includes analyzing the image to determine the concentration of the one or more analytes.
Claims
1. A method of determining a concentration of one or more analytes in a sample, the method comprising: introducing the sample through a channel; illuminating the sample with light having varying wavelengths; obtaining an image of the illuminated sample at each of the wavelengths; and analyzing the image to determine the concentration of the one or more analytes.
2. The method according to claim 1, wherein the channel is a microfluidic channel.
3. The method according to claims 1, further comprising generating a cell-free plasma layer in the channel where the sample is whole blood, wherein the cell-free plasma layer comprises the one or more analytes.
4. The method according to claim 1, wherein analyzing the image comprises: detecting a cell-free plasma layer in the image; determining an optical density of the plasma at each of the varying wavelengths; identifying an absorption coefficient for the one or more analytes; and determining the concentration of the one or more analytes based on the optical density and the absorption coefficient.
5. The method according to claim 1, wherein detecting the cell-free plasma layer in the image comprises: defining a threshold of intensity value of pixels associated with the cell-free plasma layer; and detecting the cell-free plasma layer in the image based on the threshold.
6. The method according to claim 1, wherein the cell-free plasma layer is illuminated with light having a wavelength in the range between 400 nm to 420 nm; and/or 440 nm to 460 nm; and/or 520 nm to 650 nm.
7. The method according to claim 3, wherein the cell-free plasma layer is generated in the channel using acoustophoresis.
8. The method according to claim 1, wherein a depth of the channel is in the range between 100 and 200 μm.
9. A system for determining a concentration of one or more analytes in a sample, the system comprising: a processing unit; a calibration database coupled to the processing unit; a memory coupled to the processing unit, the memory comprising an image processing module configured for: obtaining an image of an illuminated sample; detecting a cell-free plasma layer in the image; and analyzing the image to determine the concentration of one or more analytes in the cell-free plasma layer.
10. The system according to claim 9, wherein in detecting a cell-free plasma layer in the image, the image processing module is configured to: define a threshold of intensity value of pixels associated with the cell-free plasma layer; and detect the cell-free plasma layer in the image based on the threshold.
11. The system according to claim 9, wherein in analyzing the image, the image processing module is configured to: determine an optical density of the plasma at each of the varying wavelengths; identify an absorption coefficient for the one or more analytes; and determine the concentration of the one or more analytes based on the optical density and the absorption coefficient.
12. A device for determining a concentration of one or more analytes in a sample, the device comprising: a channel configured to carry the sample; a light source configured to emit light at varying wavelengths, wherein the sample is illuminated at varying wavelengths using the light source; and an image capturing module configured to capture an image of the illuminated sample.
13. The device according to claim 12, wherein the channel is a microfluidic channel.
14. The device according to claim 12, wherein the light source is configured to emit light at wavelengths in the range between 400 nm to 420 nm, and/or 440 nm to 460 nm, and/or 520 nm to 650 nm.
15. The device according to claim 12, wherein a cell-free plasma layer is generated in the channel.
16. The device according to claim 12, wherein the cell-free plasma layer is generated using acoustophoresis.
17. The device according to claim 12, wherein a depth of the channel is in the range between 100 and 200 um.
18. The device according to claim 12, wherein the image capturing module comprises one or more lenses and an imaging sensor, wherein the imaging sensor is a charge-coupled device or complementary metal oxide semiconductor.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0008] The present invention is further described hereinafter with reference to illustrated embodiments shown in the accompanying drawings, in which:
[0009]
[0010]
[0011]
[0012]
[0013]
[0014]
[0015]
[0016]
[0017]
[0018]
[0019]
DETAILED DESCRIPTION
[0020] Hereinafter, embodiments for carrying out the present invention are described in detail. The various embodiments are described with reference to the drawings, wherein like reference numerals are used to refer to like elements throughout. In the following description, for purpose of explanation, numerous specific details are set forth in order to provide a thorough understanding of one or more embodiments. It may be evident that such embodiments may be practiced without these specific details. In other instances, well known materials or methods have not been described in detail in order to avoid unnecessarily obscuring embodiments of the present disclosure. While the disclosure is susceptible to various modifications and alternative forms, specific embodiments thereof are shown by way of example in the drawings and will herein be described in detail. It should be understood, however, that there is no intent to limit the disclosure to the particular forms disclosed, but on the contrary, the disclosure is to cover all modifications, equivalents, and alternatives falling within the spirit and scope of the present disclosure.
[0021]
[0022] The client devices 107.1-107.n include a device 107.1 to determine the concentration of one or more analytes in the whole blood sample. The device 107.1 may be configured to capture an image of a processed whole blood sample. Such image may be sent to the server 101 via a network interface. The client devices 1017.1-107.n also include a user device 107.2, used by a user. In an embodiment, the user device 107.2 may be used by the user, to receive the concentration values of the one or more analytes present in the sample. The concentration values can be accessed by the user via a graphical user interface of an end user web application on the user device 107.n. In another embodiment, a request may be sent to the server 101 to access the concentration values via the network 106.
[0023]
[0024] The processing unit 201, as used herein, means any type of computational circuit, such as, but not limited to, a microprocessor, microcontroller, complex instruction set computing microprocessor, reduced instruction set computing microprocessor, very long instruction word microprocessor, explicitly parallel instruction computing microprocessor, graphics processor, digital signal processor, or any other type of processing circuit. The processing unit 201 may also include embedded controllers, such as generic or programmable logic devices or arrays, application specific integrated circuits, single-chip computers, and the like. In general, a processing unit 201 can comprise hardware elements and software elements. The processing unit 201 can be configured for multithreading, i.e. the processing unit 201 can host different calculation processes at the same time, executing the either in parallel or switching between active and passive calculation processes.
[0025] The memory 202 may be volatile memory and non-volatile memory. The memory 202 may be coupled for communication with the processing unit 201. The processing unit 201 may execute instructions and/or code stored in the memory 202. A variety of computer- readable storage media may be stored in and accessed from the memory 202. The memory 202 may include any suitable elements for storing data and machine-readable instructions, such as read only memory, random access memory, erasable programmable read only memory, electrically erasable programmable read only memory, a hard drive, a removable media drive for handling compact disks, digital video disks, diskettes, magnetic tape cartridges, memory cards, and the like. In the present embodiment, the memory 202 includes an image processing module 103 stored in the form of machine-readable instructions on any of the above-mentioned storage media and may be in communication to and executed by processing unit 201. When executed by the processing unit 201, the image processing module 103 causes the processing unit 201 to analyze the image of the sample to determine the concentration of one or more analytes. Method steps executed by the processing unit 201 to achieve the abovementioned functionality are elaborated upon in detail in
[0026] The storage unit 203 may be a non-transitory storage medium which stores a calibration database 102. The calibration database 102 is a repository of images associated with the whole blood in a channel 306. The input unit 204 may include input means such as keypad, touch-sensitive display, camera, etc. capable of receiving input signal. The bus 207 acts as interconnect between the processing unit 201, the memory 202, the storage unit 203, the communication interface 107 the input unit 204 and the output unit 205.
[0027] Those of ordinary skilled in the art will appreciate that the hardware depicted in
[0028] A system in accordance with an embodiment of the present disclosure includes an operating system employing a graphical user interface. The operating system permits multiple display windows to be presented in the graphical user interface simultaneously with each display window providing an interface to a different application or to a different instance of the same application. A cursor in the graphical user interface may be manipulated by a user through the pointing device. The position of the cursor may be changed and/or an event such as clicking a mouse button, generated to actuate a desired response.
[0029] One of various commercial operating systems, such as a version of Microsoft Windows™, a product of Microsoft Corporation located in Redmond, Washington may be employed if suitably modified. The operating system is modified or created in accordance with the present disclosure as described.
[0030] The present invention is not limited to a particular computer system platform, processing unit, operating system, or network. One or more aspects of the present invention may be distributed among one or more computer systems, for example, servers configured to provide one or more services to one or more client computers, or to perform a complete task in a distributed system. For example, one or more aspects of the present invention may be performed on a client-server system that comprises components distributed among one or more server systems that perform multiple functions according to various embodiments. These components comprise, for example, executable, intermediate, or interpreted code, which communicate over a network using a communication protocol. The present invention is not limited to be executable on any particular system or group of systems, and is not limited to any particular distributed architecture, network, or communication protocol.
[0031] Disclosed embodiments provide systems and methods for analyzing a sample. In particular, the systems and methods may determine a concentration of one or more analytes in a whole blood sample.
[0032]
[0033]
[0034] At step 404 of the method 400, an image of the illuminated cell-free plasma layer in the channel 306 is obtained. In an embodiment, the image of the cell-free plasma layer may be captured using the image capturing module 303, 304. The image may therefore be received from the image capturing module 303, 304. Alternatively, the captured image may be stored in the calibration database 102 and may be obtained from the calibration database 102 for further analysis. Such image of the cell-free plasma layer may be obtained each time the plasma layer is illuminated with the chosen wavelength. Therefore, for example, if the cell-free plasma layer is illuminated with light having three different wavelengths, one image for each of the three wavelengths is obtained. At step 405, the obtained image is analyzed by the image processing module to determine the concentration of one or more analytes in the whole blood sample.
[0035]
[0036] At step 502 of the method 500, an optical density associated with the plasma is determined at each of the chosen wavelengths. In an embodiment, the image processing module 105 may be calibrated with known standard samples of the analytes to be determined, before an unknown sample is tested. The calibration enables determination of absorption coefficient associated with each of the analytes to be determined. Therefore, known samples may be of free hemoglobin, bilirubin and lipid taken individually. Absorption coefficients for each analyte are constant and may depend on the material property of the analytes and the wavelength of illuminated light. In order to calibrate the image processing module 105, known standard samples of free hemoglobin, bilirubin and lipid are used at defined concentrations. The concentrations for free hemoglobin may be, for example, in the range between 0 mg/dL and 600 mg/dL. An image is obtained for concentrations of, for example, 50 mg/dL; 100 mg/dL; 200 mg/dL; and 400 mg/dL of free hemoglobin at each of the chosen wavelengths. Similarly, the concentrations for bilirubin may be, for example, in the range of 0 mg/dL to 50 mg/dL. An image is obtained for concentrations of, for example, 1.25 mg/dL; 2.5 mg/dL; 5 mg/dL; 10 mg/dL; 20 mg/dL; and 40 mg/dL of bilirubin at each of the chosen wavelengths. Known standard concentrations of lipid may range from 0 mg/dL to 800 mg/dL. An image is obtained for concentrations of, for example, 75 mg/dL; 150 mg/dL; 300 mg/dL and 600 mg/dL.
[0037] An optical density is calculated for each analyte, at each concentration. Optical density is a logarithmic ratio of falling radiation to the transmitted radiation through the sample. Optical density is a fraction of absorbed radiation at a particular wavelength. Optical density may be calculated using the following mathematical expression:
where I refers to mean pixel value of the sample and I.sub.0 refers to mean pixel value of blank. Optical density may also be referred to as a product of absorption coefficient and concentration. Therefore, for a given analyte, the optical density may be depicted as:
Optical density=ε[C]
where ε is the absorption coefficient of the analyte and C is the concentration of the analyte. Therefore, for pure and known samples of free hemoglobin, bilirubin and lipids, the optical density may be calculated.
[0038]
[0039]
[0040] In an embodiment, the image processing module 105 may be trained based on the images obtained for samples with known concentrations and the absorption coefficient matrix to accurately determine the concentration in an unknown sample. Therefore, when the whole blood sample, containing the analytes in unknown concentrations is analyzed, at step 502 of method 500, the obtained images are analyzed to determine the optical density of the analytes.
[0041]
TABLE-US-00001 Desired concentration (mg/dL) 50 100 200 Mean of determined 47.0 100.3 198.0 concentration (mg/dL) Standard deviation 3.3 10.2 14.7 Coefficient of variation (%) 7.0 10.2 7.4
[0042] The graphical representation 1102 refers to analysis results of bilirubin sample at known concentrations of 5 mg/dL, 10 mg/dL and 20 mg/dL. The standard deviation of test results as below:
TABLE-US-00002 Desired concentration (mg/dL) 5 10 20 Mean of determined 5 9.8 19.8 concentration (mg/dL) Standard deviation 0.8 1.4 1.1 Coefficient of variation (%) 7.0 10.2 7.4
[0043] The graphical representation 1103 refers to analysis results of lipid sample at known concentrations of 200 mg/dL, 400 mg/dL and 600 mg/dL. The standard deviation of test results as below:
TABLE-US-00003 Desired concentration (mg/dL) 200 400 600 Mean of determined 243.7 470.4 665.9 concentration (mg/dL) Standard deviation 22.5 16.0 45.4 Coefficient of variation (%) 9.2 3.4 6.8
[0044] Since the image data set 1000 have several thousand pixels, the mean values of pixels do not significantly affect the results. Even in the presence of stray red blood cells, the invention provides desired results. As only a small area of the obtained image is analyzed to determine the concentration of analytes, low sample volumes of <1 microliter is sufficient for optical analysis. Furthermore, the invention is cost effective as the hardware components are limited. Additionally, the channel 306 is reusable. The invention also enables detection of bilirubin and lipids in the sample along with hemolysis measurement.
[0045] The foregoing examples have been provided merely for the purpose of explanation and are in no way to be construed as limiting of the present invention disclosed herein. While the invention has been described with reference to various embodiments, it is understood that the words, which have been used herein, are words of description and illustration, rather than words of limitation. Further, although the invention has been described herein with reference to particular means, materials, and embodiments, the invention is not intended to be limited to the particulars disclosed herein; rather, the invention extends to all functionally equivalent structures, methods and uses, such as are within the scope of the appended claims. Those skilled in the art, having the benefit of the teachings of this specification, may effect numerous modifications thereto and changes may be made without departing from the scope and spirit of the invention in its aspects.