RECOMBINANT YEAST STRAIN HAVING STEROL PRODUCTIVITY, PREPARATION METHOD THEREFOR AND USE THEREOF
20210171963 · 2021-06-10
Assignee
- DAEWOONG PHARMACEUTICAL CO., LTD. (Gyeonggi-Do, KR)
- Chung Ang University Industry Academic Cooperation Foundation (Seoul, KR)
Inventors
- Hyun Ah Kang (Seoul, KR)
- Hye Yun MOON (Seoul, KR)
- Hui Jeong JANG (Gyeonggi-do, KR)
- Seon A JUNG (Seoul, KR)
Cpc classification
C12Y114/19
CHEMISTRY; METALLURGY
C12Y103/01021
CHEMISTRY; METALLURGY
C12N15/90
CHEMISTRY; METALLURGY
C12Y103/01071
CHEMISTRY; METALLURGY
International classification
Abstract
The present invention relates to a recombinant yeast strain having sterol productivity, a preparation method therefor and a use thereof, and more specifically, to a recombinant yeast strain capable of producing cholesterol and cholesterol precursors in a high yield through the deletion of ERG5 and ERG6 genes and the introduction of DHCR24 and DHCR7 genes by codon-optimizing same in multiple or with a codon context method; and a production method therefor and a use thereof. In addition, disclosed are: a method for producing a recombinant yeast strain with increased production yields of cholesterol and cholesterol precursors by the additional introduction of gene tHMG1, ERG2, ERG3, ERG27, or UPC2-1 in the prepared recombinant yeast strain; and a use thereof
Claims
1. A recombinant yeast strain having sterol productivity, into which ERG5 and ERG6 genes are deleted and DHCR24 and DHCR7 genes are introduced, wherein one or more copies of the DHCR24 and DHCR7 genes introduced through multiple integration or one or more copies of codon-optimized DHCR24 and DHCR7 synthetic genes are introduced.
2. The recombinant yeast strain of claim 1, wherein the copy number of one or more of the DHCR24 and DHCR7 genes is 2 to 10.
3. The recombinant yeast strain of claim 1, wherein one or more genes selected from the group consisting of ERG5, ERG2, ERG27 and UPC2-1 genes are further introduced into the recombinant yeast strain.
4. The recombinant yeast strain of claim 1, wherein a synthetic gene encoding an ERG27-ERG2 fusion protein is further introduced into the recombinant yeast strain.
5. The recombinant yeast strain of claim 1, wherein the DHCR24 gene is introduced into an ERG6 gene site, and the DHCR7 gene is introduced into an ERG5 gene site.
6. The recombinant yeast strain of claim 1, wherein the sterol comprises one or more of a cholesterol precursor or cholesterol.
7. The recombinant yeast strain of claim 6, wherein the cholesterol precursor comprises one or more selected from the group consisting of zymosterol, dehydrocholesterol, lathosterol, dehydrodesmosterol and desmosterol.
8. The recombinant yeast strain of claim 1, wherein the recombinant strain is prepared using a multiple gene integration cassette sequentially comprising an N-terminal fragment gene of a Saccharomyces cerevisiae ribosomal DNA non-transcribed spacer (rDNA NTS), a target gene to be inserted, an auxotrophic selectable marker gene including a promoter region and a C-terminal fragment gene of the Saccharomyces cerevisiae rDNA NTS.
9. The recombinant yeast strain of claim 8, wherein, in the multiple gene integration cassette, the N-terminal fragment gene of the rDNA NTS is represented by SEQ ID NO: 1, and the C-terminal fragment gene of the rDNA NTS is represented by SEQ ID NO: 2.
10. The recombinant yeast strain of claim 1, wherein the codon-optimized DHCR24 synthetic gene consists of SEQ ID NO: 17, and the DHCR7 synthetic gene consists of SEQ ID NO: 18.
11. The recombinant yeast strain of claim 1, wherein a tHMG1 gene is further introduced onto a host chromosome.
12. A method of preparing a recombinant yeast strain having sterol productivity, comprising: deleting ERG5 and ERG6 genes of a yeast strain, and introducing DHCR24 and DHCR7 genes, wherein multiple copies of one or more of the DHCR24 and DHCR7 genes are introduced.
13. The method of claim 12, wherein the yeast strain is Saccharomyces cerevisiae.
14. The method of claim 12, wherein the introduction of the DHCR24 and DHCR7 genes is performed using a multiple gene integration cassette sequentially comprising an N-terminal fragment gene of a Saccharomyces cerevisiae ribosomal DNA non-transcribed spacer (rDNA NTS), a target gene to be inserted, an auxotrophic selectable marker gene including a promoter region and a C-terminal fragment gene of the Saccharomyces cerevisiae rDNA NTS.
15. A method of producing a sterol by culturing the recombinant yeast strain of claim 1.
16. The method of claim 15, wherein the culture is performed at 25 to 35° C. for 2 to 10 days.
Description
DESCRIPTION OF DRAWINGS
[0028]
[0029]
[0030]
[0031]
[0032]
[0033]
[0034]
[0035]
[0036]
[0037]
[0038]
[0039]
[0040]
[0041]
MODES OF THE INVENTION
[0042] Hereinafter, the present invention will be described in further detail with reference to exemplary embodiments. The objects, features and advantages of the present invention are easily understood through the following exemplary embodiments. The present invention is not limited to the exemplary embodiments to be described below, but may be embodied in other forms. The exemplary embodiments presented herein are provided such that the idea of the present invention can be fully conveyed to those of ordinary skill in the art to which the present invention belongs. Therefore, the present invention should not be limited by the following exemplary embodiments.
[0043] This embodiment was carried out to prepare a recombinant yeast strain that produces cholesterol and precursors thereof of an animal cell, instead of ergosterol, which is a yeast-specific sterol. To this end, a recombinant yeast strain having a cholesterol biosynthesis pathway was prepared by blocking the final ergosterol biosynthesis step for traditional baking yeast Saccharomyces cerevisiae and introducing a cholesterol biosynthesis-related foreign gene (
[0044] The ERG5, ERG6, DHCR7, DHCR24, ERG3, ERG2, ERG27, ARE2, ERG27-ERG2, UPC2-1 and tHMG1 may consist of sequences represented by SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16 and SEQ ID NO: 19, respectively.
TABLE-US-00001 ERG27-ERG2 fusion gene sequence (SEQ ID NO: 15, underlined: ERG2 region) ttaaaactaaaacccccattccaaccaattacatgttcgat ccaaaaactttgaacgaaatatgtaactcggtgattagcaa acacaacgcagcagaaggtttatccactgaagacctgttac aggatgtcagagacgcacttgcctctcattacggggacgaa tacatcaacaggtacgtcaaagaagaatgggtcttcaacaa tgctggtggtgcgatgggccaaatgatcatcctacacgctt ccgtatccgagtacttaattctattcggaaccgctgttggt actgaagggcacacaggtgttcactttgctgacgactattt taccatcttacatggtacgcaaatcgcagcattgccatatg ccactgaagccgaagtttacactcctggtatgactcatcac ttgaagaagggatacgccaagcaatacagcatgccaggtgg ttcctttgcccttgaattggctcaaggctggattccatgta tgttgccattcgggtttttggacactttctccagtactctt gatttatacactctatatagaactgtctacctgactgccag ggacatgggtaagaacttgttgcaaaacaaaaagttctaa UPC2-1 sequence (SEQ ID NO: 16, underlined capital letters: G888D point mutation site (GGT to GAT) attattaagagaagctgttttagaaatatctgagaataaca ccgatgcgctagttgccagcgccctgatactaatcatggac tcgttagcaaatgctagtggtaacggcactgtaggaaacca aagtttgaatagcatgtcaccaagcgcttggatctttcatg tcaaaggtgctgcaacaattttaaccgctgtgtggcctttg agtgaaagatctaaatttcataacattatatctgttgatct tagcgatttaggcgatgtcattaaccctgatgttggaacaa ttactgaattggtatgttttgatgaaagtattgccgatttg tatcctgtcggcttagattcgccatatttgataacactagc ttatttagataaattgcaccgtgaaaaaaaccagggtgatt ttattctgcgggtatttacatttccagcattgctagacaag acattcctggcattactgatgacaggtgatttaggtgcaat gagaattatgagatcatattataaactacttcgaggatttg ccacagaggtcaaggataaagtctggtttctcgaaggagtc acgcaggtgctgcctcaagatgttgacgaatacagtggagg tggtGATatgcatatgatgctagatttcctcggtggcggat taccatcgatgacaacaacaaatttctctgatttttcgtta
[0045] Hereinafter, the present invention will be described in further detail with reference to specific examples.
EXAMPLES
Materials
[0046] Primers, expression vectors and yeast strains used in the examples are listed in Tables 1 to 3. The expression vectors constructed in the examples are listed in the diagram in
Apparatus
[0071] HPLC (Waters Separations Module 2695, Waters Dual λ Absorbance Detector
2487) [0072] PCR cycler (Eppendorf, AG 22331) [0073] Bead beater (BERTIN TECHNOLOGY, PrecellysR24) [0074] Water bath (TAITEC, SDN-B) [0075] Centrifuge (Eppendorf, 5424R) [0076] Rotational vacuum concentrator (CHRIST, RVC 2-25 CD plus) [0077] HPLC-CAD system (Thermo Scientific, Dionex Ultimate 3000-Corona Veo RS) [0078] Bioprocess analyzer (Roche, Cedex Bio)
TABLE-US-00002 [TABLE 1] Primers used in this experiment Primer Sequence (5′->3′) erg5 dN fw ACATGCATGCCGCTATTG AAGAGAGCTCATG (SEQ ID NO: 20) erg5 dN rv GCGGCCGCGGGTCTAGAG GGGGATCCCCAGGATACT GAAGGCAGTAG (SEQ ID NO: 21) erg5 dC fw GGATCCCCCTCTAGACCC GCGGCCGC CATGATTAC CTTCGCCGCTTTG (SEQ ID NO: 22) erg5 dC rv CGACGCGT GCTGGCAGG GTGAGTATTTG (SEQ ID NO: 23) erg6 dN fw ACGTGCATGCGCTGTTGC CGATAACTTCTTC (SEQ ID NO: 24) erg6 dN rv GCGGCCGCGGGTCTAGAG GGCTCGAGGGGGGATCC CTCAATTCTGTTTCACT CATC (SEQ ID NO: 25) erg6 dC fw GGATCCCCCCTCGAGCCC TCTAGACCCGCGGCCGCC CTCCCAAACTTCCCAAG (SEQ ID NO: 26) erg6 dC rv CGACGCGTCTTGCCGCTG TAGACAATAG (SEQ ID NO: 27) DHCR7 fw AACTGCAGATGATGGCCT CCGATAGAGTTAG (SEQ ID NO: 28) DHCR7 rv GCGTCGACTTACTTGTC GTCATCGTCTTTGTAGT CAAAGATGTTTGGCAAT AATCTATAGG (SEQ ID NO: 29) DHCR24 AACTGCAGATGGACCCT fw TTGTTGTATTTGGG (SEQ ID NO: 30) DHCR24 GCGTCGACTTACGCATA rv GTCAGGAACATCGTATG GGTAGTGTCTGGCGGAT TTACAG (SEQ ID NO: 31) TEF1p CCG CTCGAG AGCTC fw ATAGCTTCAAAATGTT TC (SEQ ID NO: 32) TEF1p rv GC TCTAGA GGGGAA ACTTAAAGAAATTC (SEQ ID NO: 33) GAL7t fw ACGC GTCGAC TTGA ACGAAACTTGAACGGA G (SEQ ID NO: 34) GAL7t rv GC TCTAGA GGGGAA ACTTAAAGAAATTC (SEQ ID NO: 35) ACT1p fw CGAAGTTATTAGGGCGGCCGC TTTGGACTCCACCAACGTC (SEQ ID NO: 36) ACT1p rv ATCGGAGGCCATCATTGTTA ATTCAGTAAATTTTCGATCT TGGG (SEQ ID NO: 37) DHCR7 TGAATTAACAATGATGGCCT fw2 CCGATAGAGTTAG (SEQ ID NO: 38) DHCR7 CTTTAATTTGCGGCCTTACT rv2 TGTCGTCATCGTCTTTG (SEQ ID NO: 39) CYC1t GATGACGACAAGTAAGGCCG fw CAAATTAAAGCCTTC (SEQ ID NO: 40) CYC1t rv ACCTCTGGCGCGGCCTCATG TAATTAGTTATGTCACGC (SEQ ID NO: 41) TDH3p fw CGCGGATCCGTAGAATCATT TTGAATAAAAAACACGC (SEQ ID NO: 42) TDH3p rv ACTTCTAAGACCAAATCCATGA ATTCTGTTTATGTGTGTTTAT T CGAAAC (SEQ ID NO: 43) ERG3 fw ACTTCTAAGACCAAATCCATGA ATTCTGTTTATGTGTGTTTT T CGAAAC (SEQ ID NO: 44) ERG3 rv AGAAAAGTCTTATCAATCTCCG TCGACTCAGTTGTTCTTCTT G GTATTTG (SEQ ID NO: 45) TEF1t fw CAAATACCAAGAAGAACAACT GAGTCGACGGAGATTGATAA G ACTTTTCT (SEQ ID NO: 46) TEF1t CCGCTCGAGGTAAAAAATAC rv GCCCGTAACGATG (SEQ ID NO: 47) TEF2p CCGCTCGAGTGCCATTAAAG fw GCGAATTTTTG (SEQ ID NO: 48) TEF2p rv AAGGAGTGGGAAAAACTTCAT GCATGCGTTTAGTTAATTAT A GTTCGTTG (SEQ ID NO: 49) ERG2 fw CAACGAACTATAATTAACTA AACGCATGCATGAAGTTTTT CCC ACTCCTT (SEQ ID NO: 50) ERG2 rv AGATTTAAAGTAAATTCACG CATGCTTAGAACTTTTTGT TTTG CAACAAG (SEQ ID NO: 51) TDH3t fw CTTGTTGCAAAACAAAAAGTTC TAAGCATGCGTGAATTTACT T TAAATCT (SEQ ID NO: 52) TDH3t rv CCGCTCGAGTCTAGATATATGT TATCTTATCTTGG (SEQ ID NO: 53) ERG27-2 CGAACATGTAATTGGTTGGAAT fw1 GGGGGTTCTAGTTTCAACA AT TTG (SEQ ID NO: 54) ERG27-2 CTATAATTAACTAAACGCATG rv1 CATGAACAGGAAAGTAGCTA T CGTAAC (SEQ ID NO: 55) ERG27-2 AAGATTTAAAGTAAATTCACG fw2 CATGCTTAGAACTTTTTGTTT TGCAACAAGTTC (SEQ ID NO: 56) ERG27-2 GTTGAAACTAGAACCCCCATT rv2 CCAACCAATTACATGTTCGAT C C (SEQ ID NO: 57) ARE2dN ACAT GCATGCCAAGTCGTA fw1 AACCTCGTCGG (SEQ ID NO: 58) ARE2dN GATATCGCGCTCGAGGTTCT rv1 CCAGTAGATCCTTCTTC (SEQ ID NO: 59) ARE2dN CTCGAGCGCGATATCGGACC fw2 AAGTGTCATGTGTACG (SEQ ID NO: 60) ARE2 dN CCG ACGCGTGGCAAATAGATT rv2 GGTTAAATCTGAAG (SEQ ID NO: 61) 101HIS fw GCTATACGAAGTTATTAGGCCC GGGGATTGGCATTATCACATA ATGAATTATAC (SEQ ID NO: 62) 101HIS rv CACCTTGAAACTACCTCTGGCG CGGCCGCTCGAGTTCAAGAGA AAAAAAAAGAAAAAGCAAAA AG (SEQ ID NO: 63) ccD7 fw CTAATCTAAGTTTTCTAGCTG CAGATGATGGCCTCTGACAG AGTC (SEQ ID NO: 64) ccD7 rv GTCACTCCGTTCAAGTCGACT TAGAAAATGTTTGGTAGCAA TCTGTAAG (SEQ ID NO: 65) ccD24 fw CTAAGTTTTCTAACTGCAGA TGGACCCATTGCTATACTTA GGTG (SEQ ID NO: 66) ccD24 rv CAAGTTTCGTTCAAGTCGACC TAATGTCTGGCAGATTTGCA AATCTTG (SEQ ID NO: 67) tHMG1-fw GGAATTCATGCCAGTTTTAA CCAATAA (SEQ ID NO: 68) tHMG1-rv GCGTCGACTTACGCATAGTC AGGAACATCGTATGGGTAG GATTTAATGCAGGTGACGG (SEQ ID NO: 69)
TABLE-US-00003 TABLE 2 Plasmids used in this experiment Plasmid Description Reference pT-ERG5dNC pGEM-Teasy vector containing ERG5 N and C partial this study fragments pT-ERG6dNC pGEM-Teasy vector containing ERG6 N and C partial this study fragments pMKRQ-DrDHCR24 pMKRQ containing S. cerevisiae-codon optimized Daewoong zebrafish DHCR7 pMKRQ-DrDHCR7 pMKRQ containing S. cerevisiae-codon optimized Daewoong zebrafish DHCR24 pUG72 loxP-pKlURA3-KlURA3-tKlURA3-loxP Euroscarf pUG73 loxP-pKlLEU2-KlLEU2-tKlLEU2-loxP Euroscarf pT-DHCR24 pGEM-Teasy-pTEF1-DHCR24-GAL7t this study pT-DHCR7 pGEM-Teasy-pACT1-DHCR7-CYC1t this study pT-erg5::DHCR24-LEU 2 pGEM-Teasy-ERG5(N)-pTEF1-DHCR24-GAL 7t- this study KlLEU2-ERG5(C) pT-erg6::DHCR7-URA3 pGEM-Teasy-ERG6(N)-pACT1-DHCR7-CYC1 t- this study KlURA3-ERG6(C) pT-erg6::DHCR24-LEU 2 pGEM-Teasy-ERG6(N)-pTEF1-DHCR24-GAL 7t- this study KlLEU2-ERG6(C) pT-erg5::DHCR7-URA3 pGEM-Teasy-ERG5(N)-pACT1-DHCR7-CYC1 t- this study KlURA3-ERG5(C) pT-NTS-86TRP1 pGEM-Teasy-5NTS2-TRP1 with 86bp promoter-3NTS2 Moon et. al., 2016 pT-NTS-DHCR24-86TR P1 pT-NTS-86TRP1 containing the DHCR24 this study expression cassette pTEF1-DHCR24-GAL7t pT-NTS-DHCR24-DHC R7- pT-NTS-DHCR24-86TRP1 containing the this study 86TRP1 DHCR7 expression cassette pACT1-DHCR7-CYC1t Y2pH 2μ-based YEp351 derivative, containing the this study GAL10 promoter and GAL7 terminator and the HIS3 marker Y2pH-DHCR7-DHCR24 Y2pH containing pTEF1-DHCR24-GAL7t and pACT1- this study DHCR7-CYC1t Y2pH-ERG3-ERG2 Y2pH containing TDH3p-ERG3-TEF1t and TEF2p- this study ERG2-TDH3t Y2pH-ERG3-ERG27-2 Y2pH containing TDH3p-ERG3-TEF1t and TEF2p- this study ERG27-ERG2 fusion-TDH3t YCpH-Tp CEN-based pRE316 derivative containing the Application: TEF1 promoter, the GAL7 terminator and the 10-2017- HIS3 marker 0182422 YCpH-np-UPC2 YCpH derivative expressing UPC2-1 under the Application: control of its own promoter 10-2017- 0182422 pT-ARE2dNC-HIS pGEM-Teasy vector containing the ARE2 this study deletion cassette ARE2::HIS3 pT-NTS-101HIS3-DHC R7 pT-NTS-101HIS3 containing the DHCR7 this study expression cassette pACT1-DHCR7-CYC1t pMKRQ-sDrDHCRc7(cc) pMKRQ containing S. cerevisiae-codon context this study optimized DHCR7 gene from Danio rerio pMKRQ-sDrDHCRc24(cc) pMKRQ containing S. cerevisiae-codon context this study optimized DHCR24 gene from Danio rerio pT-ERG5dNC-ccDHCR 7 pGEM-Teasy-ERG5(N)-pACT1-ccDHCR7-CY C1t- this study ERG5(C) pT-ERG5dNC-ccDHCR 24 pGEM-Teasy-ERG5(N)-pTEF1-ccDHCR24-GA L7t- this study KlLEU2-ERG5(C) pT-ERG6dNC-ccDHCR 7 pGEM-Teasy-ERG6(N)-pACT1-ccDHCR7-CY C1t- this study ERG6(C) pT-ERG6dNC-ccDHCR 24 pGEM-Teasy-ERG6(N)-pTEF1-ccDHCR24-GA L7t- this study KlLEU2-ERG6(C) pT-erg6::ccDHCR7-UR A3 pGEM-Teasy-ERG6(N)-pACT1-ccDHCR7-CY C1t- this study KlURA3-ERG6(C) pT-erg6::ccDHCR24-LE U2 pGEM-Teasy-ERG6(N)-pTEF1-ccDHCR24-GA L7t- this study KlLEU2-ERG6(C) pT-erg5::ccDHCR-UR A3 pGEM-Teasy-ERG5(N)-pACT1-ccDHCR7-CYC1t- this study KlURA3-ERG5(C) pT-NTS-86TRP1-tHMG 1 pT-NTS-86TRP1 containing the N-truncated HMG1 this study expression cassette pTEF1-tHMG1-GAL7t
TABLE-US-00004 TABLE 3 Yeast strains used in this experiment Strain Genotype Reference 1 CEN.PK (WT) MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C Entian SUC2 and Kotter (2007) 2 erg5::D24 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24 3 erg6::D7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg6Δ::KlURA3-TEF1p-sDrDHCR7 4 erg6::D24 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg6Δ::KlLEU2-TEF1p-sDrDHCR24 5 erg5::D7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlURA3-TEF1p-sDrDHCR7 6 erg5::D24/erg6::D 7 (#19) MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7 7 erg6::D24/erg5::D 7(#S1) MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR7, erg6Δ::KlURA3- TEF1p-sDrDHCR24 8 .sub.NTSD24/erg5::D24/erg6:: MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study D7(.sub.NTSD24/#19) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-TRP1 9 .sub.NTSD24/erg6::D24/erg5:: MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study D7(.sub.NTSD24/#S1) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR7, erg6Δ::KlURA3- TEF1p-sDrDHCR24, NTS-DHCR24-TRP1 10 .sub.NTSD24D7/erg5::D24/ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study erg6::D7(.sub.NTSD24D7/#19) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-DHCR7-TRP1 11 .sub.2uD24D7/erg6::D24/erg5:: MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study D7(.sub.2uD24 D7/#S1) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR7, ergΔ::KlURA3- TEF1p-sDrDHCR24/Y2pH-DH CR24-DHCR7 12 E3E2/.sub.NTSD24D7/erg5:: MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study D24/erg6::D7 SUC2 ergΔ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-DHCR7- TRP1/Y2pH-ERG3-ERG2 13 E3E27- MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study 2/.sub.NTSD24D7/erg5:: SUC2 D24/erg6:: D7 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-DHCR7- TRP1/Y2pH-ERG3-ERG27-2 14 UPC2- MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study 1/.sub.NTSD24D7/erg5::D24/ SUC2 erg6::D7 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-DHCR7- TRP1/Y2pH-ERG3-ERG2 15 .sub.NTSD24D7/WT MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 NTS-DHCR24-DHCR7-TRP1 16 E3E2/.sub.NTSD24D7/WT MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 NTS-DHCR24-DHCR7-TRP1/Y2pH-ERG3-ERG2 17 E3E27-2/.sub.NTSD24D7/ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 this study WT MAL2-8C SUC2 NTS-DHCR24-DHCR7-TRP1/Y2pH-ERG3 ERG27ERG2 fusion 18 UPC2-1/.sub.NTSD24D7/ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study WT SUC2 NTS-DHCR24-DHCR7-TRP1/Y2pH-ERG3 ERG27ERG2 fusion 19 erg6::D7/UPC2-1/ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study .sub.NTSD24D7 SUC2 NTS-DHCR24-DHCR7-TRP1/Y2pH-ERG3- ERG27ERG2 fusion/erg6Δ::KlURA3-TEF1p-sDrDHCR7 20 are2Δ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 are2Δ::HIS3 21 are2Δ/.sub.NTSD24D7/ MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study erg5::D24/erg6::D7 SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24, erg6Δ::KlURA3- TEF1p-sDrDHCR7, NTS-DHCR24-DHCR7-TRP1 are2Δ::HIS3 22 .sub.NTSD7/.sub.NTSD24/#S1 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ:: KlLEU2 TEF1p-sDrDHCR7, ergΔ::KlURA3- TEF1p-sDrDHCR24, NTS-DHC R24-TRP1/NTS- DHCR7-HIS3 23 erg5::ccD24 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24(cc) 24 erg6::ccD7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg6Δ::KlURA3-TEF1p-sDrDHCR7(cc) 25 erg6::ccD24 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg6Δ::KlLEU2-TEF1p-sDrDHCR24(cc) 26 erg5::ccD7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlURA3-TEF1p-sDrDHCR7(cc) 27 erg5::ccD24/erg6::ccD7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C (#cc19) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24 (cc), erg6Δ::KlURA3-TEF1p-sDrDHCR7 (cc) 28 erg6::ccD24/erg5::ccD7 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C (#ccS1) SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR7(cc), erg6Δ::KlURA3-TEF1p-sDrDHCR24(cc) 29 tHMG1/#cc19 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR24(cc), erg6Δ::KlURA3-TEF1p-sDrDHCR7(cc)/NTS-t HMG1- TRP1 30 tHMG1/#ccS1 MATa ura3-52 trp1-289 leu2-3,112 his3-D1 MAL2-8C this study SUC2 erg5Δ::KlLEU2-TEF1p-sDrDHCR7(cc), erg6Δ::KlURA3-TEF1p-sDrDHCR24(cc)/NTS-t HMG1- TRP1
Yeast Transformation (LiAc/PEG method)
[0079] To perform transformation using the prepared vectors or cassettes, a strain precultured in a YPD (2%(w/v) bacto-peptone, 1%(w/v) bacto-yeast extract, and 2%(w/v) D-glucose) liquid medium was grown in a 500 mL baffled flask to an initial OD.sub.600 of 0.2, and 50 mL of the medium was cultured in a rotary shaker at 30° C. and 180 rpm. After 6 to 7 hours, the cells were cultured until OD.sub.600 reached 1.0, and centrifuged at 4° C. and 4,000 rpm for 10 minutes. After removing a supernatant, 1 mL of a LiAc/TE buffer solution (0.01 M Tris-HCl, 1 mM EDTA, 0.1 M LiAc, pH 7.5) was added to the pellet, and the pellet was suspended by pipetting and then centrifuged at 13,000 rpm for 1 minute, thereby obtaining a pellet. The pellet was resuspended in 500 μL of a LiAc/TE buffer solution, thereby preparing competent cells. The resulting cells were divided into five tubes at 100 μL each, and 2 μL of a recombinant vector or cassette, 10 μL of salmon sperm DNA and 600 μL of a PEG/LiAc buffer solution (50% polyethylene glycol), 0.01 M Tris-HCl, 1 mM EDTA, 0.1 M LiAc, pH 7.5) were mixed in each tube, followed by gentle pipetting 3 to 4 times. After the tube was left at 30° C. for 30 minutes, 70 μL of DMSO was added and mixed by pipetting, followed by thermal treatment at 42° C. for 15 minutes. The tube was left on ice for 3 minutes, and centrifuged at 13,000 rpm for 1 minute, thereby obtaining a pellet, and the pellet was suspended with sterilized distilled water, and plated on a specific amino acid (LEU or TRP or HIS) or base (URA)-deleted SC synthesis-based selective medium SC-LEU, SC-URA, SC-LUE-URA-TRP or SC-LUE-URA-TRP-HIS (0.67% yeast nitrogen base without amino acids, 2% glucose, 0.77 g/L drop-out amino acid mixture supplemented without leucine, tryptophan, histidine, or uracil in combination) to culture the cells at 30° C. for 48 hours, thereby obtaining a transformant (Hill J et. al. 1991).
Example 1
Preparation of Sterol-Producing Strains through ERG5 and ERG6 Deletion and Co-Insertion of DHCR24 and DHCR7
[0080] First, for ERG5 and ERG6 deletion, two PCR fragments, such as N- and C-fragments at which homologous recombination would occur, were obtained using an erg5 dN fw, erg5 dN rv, erg5 dC fw, erg5 dC rv, erg6 dN fw, erg6 dN rv, erg6 dC fw or erg6 dC ry primer shown in Table 1, and then subjected to fusion PCR, thereby obtaining pT-ERG5dNC or pT-ERG6dNC. DNA fragments of DHCR7 and DHCR24 were recovered from pMKRQ-DrDHCR24 and pMKRQ-DrDHCR7 in which codon-optimized zebrafish-derived DHCR24 and DHCR7 genes were cloned by a codon adaptation index method for yeast through PCR, and ligated with 411 bp TEF1 promoter and 314 bp GALT terminator, which were obtained by PCR, thereby constructing vectors pT-DHCR24 and pT-DHCR7. Subsequently, TEF1p-DHCR7-GAL7t and TEF1p-DHCR24-GAL7t fragments obtained from these vectors were inserted into BamHI/XbaI sites in the N- and C-fragments of the vectors pT-ERG5dNC and pT-ERG6dNC, and K1URA3 and K1LEU2 were obtained from vectors pUG73 and pUG72 and inserted into NotI sites, thereby obtaining final vectors pT-erg5::DHCR24-LEU2, pT-erg6::DHCR7-URA3, pT-erg6::DHCR24-LEU2, and pT-erg5::DHCR7-URA3 (
Example 2
Preparation of Multiple DHCR24 Integration Cassette and Selection of Recombinant Yeast
[0081] For multiple integration of cholesterol biosynthetic genes, an NTS-DHCR24-86TRP1 cassette was constructed using the rDNA-NTS-based multiple integration cassette system (Moon et al., 2016) developed by the inventors. The NTS-DHCR24-86TRP1 cassette was recovered by treating pT-NTS-DHCR24-86TRP1, which was constructed by inserting TEF1p-DHCR24-GALt7 fragment derived from pT-erg6::DHCR24-LEU2 into pT-NTS-86TRP1 vector at a BamHI site (
Example 3
Construction of Multiple DHCR24/DHCR7 Integration Cassette and Selection of Recombinant Yeast
[0082] Vector pT-NTS-DHCR24-DHCR7-86TRP1 (
[0083] In addition, vector pT-NTS-86TRP1-DHCR7 was constructed by treating vector pT-NTS-86TRP1-DHCR24-DHCR7 with BamHI to remove DHCR24.
[0084] Afterward, pT-NTS-101HIS3-DHCR7 was constructed by removing 86TRP1 by treating the vector pT-NTS-86TRP1-DHCR7 with SmaI/NotI and inserting HIS3 fragment having a 101- bp promoter obtained by PCR using primers 101HIS3 fw and 101HIS3 ry (
Example 4
Construction of Episomal Plasmid-Based DHCR24/DHCR7 Expression Vector
[0085] Vector Y2pH-DHCR7-DHCR24 using two micro yeast episomal plasmids (
Example 5
Preparation of ERG27-ERG2 Fusion Gene and ERG3-Overexpressing Strain
[0086] For ERG2 and ERG3 expression, vector Y2pH-ERG3-ERG2 (
[0087] Y2pH-ERG3-ERG2?-2 fusion vector (
Example 6
Preparation of UPC2-1-Introduced Strain
[0088] YCpH-np-UPC2 constructed by the inventors using 480-bp UPC2 promoter and yeast centromere plasmids (YCp) was transformed into .sub.2uD24D7/#19 strain, and selected from a SC-LEU-URA-TRP-HIS medium, thereby preparing recombinant strain UPC2-1/NTS D24D7/#19 (
Example 7
Preparation of erg6::D7/UPC2-1/.SUB.NTS.D24D7 Strain
[0089] Recombinant strain .sub.NTSD24D7/WT was obtained by transforming the previously constructed NTS-DHCR24-DHCR7-86TRP1 cassette into a wild-type CEN.PK strain, and selecting the transformant from a SC-TRP medium. Afterward, the constructed Y2pH-ERG3-ERG2, Y2pH-ERG3-ERG27-2 and YCpH-np-UPC2 were introduced, thereby preparing E3E2/.sub.NTSD24D7/WT, E3E27-2/.sub.NTSD24D7/WT and UPC2-1/.sub.NTSD24D7/WT strains, respectively. Among these strains, the UPC2-1/.sub.NTSD24D7/WT strain was selected, and ERG6 gene was deleted using an erg6::DHCR7-URA3 cassette, thereby preparing erg6::D7/UPC2-1/.sub.NTSD24D7 strain (
Example 8
Preparation of Strain from which ARE2, which is the Main Gene for Sterol Esterification, is Deleted
[0090] For ARE2 deletion using homologous recombination, N- and C-fragments were obtained using ARE2 dN fw, ARE2 dN fw, ARE2 dC fw, and ARE2 dC fw primers through PCR, and then subjected to fusion PCR, thereby obtaining pT-ARE2dNC. Afterward, a final vector pT-ARE2dNC-HIS was obtained by inserting ScHIS3 at an XhoI/EcoRV site between the two fragments, an ARE2dNC-HIS cassette was obtained by SphI/MluI treatment, transformed into .sub.NTSD24D7/#19 strain by a LiAc/PEG method, and selected from a SC-LEU-URA-TRP-HIS medium, thereby preparing a recombinant strain are 2Δ/.sub.NTSD24D7/#19.
Example 9
Construction of ERG5/ERG6 Deletion and Co-Insertion of DHCR24/DHCR7 Using Codon-Optimized ccDHCR24 and ccDHCR7 by Codon Context Method and Selection of Recombinant Yeast
[0091] The previously-constructed vectors pT-ERG5dNC-DrDHCR7, pT-ERG5dNC-DrDHCR24, pT-ERG6dNC-DrDHCR7 and pT-ERG6dNC-DrDHCR7 were treated with PstI/SalI to be prepared as backbones, and inserts obtained by treating ccDHCR24 and ccDHCR7 fragments obtained by PCR using primers ccD7 fw, ccD7 rv, ccD24 fw and ccD24 ry with KpnI/SalI were ligated to vectors pMKRQ-sDrDHCR7(cc) and pMKRQ-sDrDHCR24(cc) in which ccDHCR24 and ccDHCR7 genes were synthesized by a codon context method, thereby obtaining vectors pT-ERG5dNC-ccDHCR7, pT-ERG5dNC-ccDHCR24, pT-ERG6dNC-ccDHCR7 and pT-ERG6dNC-ccDHCR24. Subsequently, final vectors pT-erg5::ccDHCR24-LEU2, pT-erg6::ccDHCR7-URA3, pT-erg6::ccDHCR24-LEU2 and pT-erg5::ccDHCR7-URA3 were obtained by inserting K1URA3 and K1LEU2 derived from pUG73 and pUG72 vectors into NotI sites (
Example 10
Improvement in Cholesterol Production Amount of Recombinant Strains #cc19 and #ccS1 by Multiple tHMG1 Integration
[0092] Vector pT-NTS-86TRP1-tHMG1 enabling multiple integration was constructed by inserting HMG1 gene from which 552 N-terminal amino acids were deleted and amplified using primers tHMG1-fw and tHMG1-ry shown in Table 1 into an EcoRI/SalI site of pT-NTS-86TRP1 (
EXPERIMENTAL EXAMPLES
[0093] Analysis of Insert Copy Number Using qPCR
[0094] To confirm the copy number of target gene expression cassettes inserted into the prepared recombinant strain, chromosomal DNA was recovered and used as a template to perform qPCR.
Analysis of Metabolic By-Products and Residual Carbon Sources
[0095] After final culture, the residual amounts of metabolic by-products (e.g., ethanol or acetate) accumulated in a supernatant and glucose, which is a carbon source added in culture, were measured. A sample used in analysis was the final culture solution of the main culture, which was centrifuged (12,000 rpm, 10 min), followed by analyzing a supernatant. The analysis was performed using a kit (Roche/COWIE) for ethanol, acetate or glucose measurement of a bio process analyzer.
HPLC-UV/Vis-Based Analysis for Cholesterol and Precursor Thereof
[0096] For a HPLC assay, a Synthetic Complete medium [SC medium (0.67% yeast nitrogen base without amino acids, 2% glucose, 0.77 g/L drop-out amino acid mixture supplemented with all required amino acids)] was inoculated with 1 or 2 colonies of the strain to perform seed culture, and then the cells were grown in a SC or YPD medium to reach OD600 of 0.3 to 0.5 after initial inoculation. To extract total sterols, 10 mL of the sample obtained after 3- to 6-day culture (28° C., 220 rpm) was recovered, and then a 0.05 g/wet weight of pellet was suspended in 1 mL KOH/EtOH (3:2) (KOH final concentration: 4.5 M) mixed solution, cultured at 85° C. for 1 hour, and mixed with 0.5 mL heptane (Sigma) using a bead beater (6,000 rpm, 15 sec, repeat three times). The mixed sample was centrifuged (12,000 rpm, 10 min, 25° C.) to recover 0.5 mL of a heptane layer from a supernatant (12,000 rpm, 10 min, 25° C.) and dried, and then HPCL analysis was performed on a sample dissolved by adding 200 μL of acetone. To extract free sterols, 0.5 mL of a chloroform:MeOH (2:1) mixture was added to a pellet, and mixed using a bead beater (6,000 rpm, 15 sec, repeat three times). The mixed sample was centrifuged (12,000 rpm, 10 min, 25° C.), an organic solvent layer was recovered and dried, 250 μL hexane was added to the dry pellet to dissolve, followed by drying again. After complete drying, a HPLC assay was performed on the sample dissolved by adding 200 μL acetone. In the HPLC assay, a column was Cosmosil C18-PAQ (4.6 mm*250 mm), a flow rate was 1 mL/min, an analysis solvent was 90% acetonitrile, and an analysis time was 50 min. Peaks corresponding to cholesterol and precursors thereof were analyzed at 203 nm using a UV/Vis detector.
Analysis of Productivity of HPLC-CAD-Based Cholesterol and Precursor Thereof
[0097] Cell culture for HPLC-CAD analysis to confirm the productivity of cholesterol and precursors thereof in the prepared strain was the same as described above in the HPLC-based analysis. For extraction of cholesterol and precursors thereof, 50 mL of a sample cultured for 3 to 6 days (28° C., 220 rpm) and resuspended in 20 mL of a resuspension solution (15% KOH (w/v), 0.125% pyrogallol (w/v), 71% MeOH (v/v)). The resulting product was reacted at 85° C. for 2 hours, cooled at room temperature, and mixed with 5 mL of petroleum ether by vortexing for 5 minutes. The mixed sample was centrifuged (3,000 g, 5 min), and a supernatant was recovered. The extraction process by adding petroleum ether was repeated twice, and by using 3 mL of petroleum ether, all of a supernatant was recovered. The recovered supernatant was dried using a rotational vacuum concentrator, and then HPLC-CAD analysis was performed on a sample dissolved by adding 1 mL of methanol to the dry sample. In HPLC-CAD analysis, a column was Capcellpak (C18, 4.6 mm×250 mm, 5 μm), a mobile phase was methanol, and a flow rate and conditions are as shown in Table below. Analysis time was 45 min.
TABLE-US-00005 Time Flow % A % B (min) (mL/min) (50% methanol) (100% methanol) 0.0 0.5 10 90 10.0 0.5 0 100 40.0 0.5 0 100 40.1 0.5 10 90 45.0 0.5 10 90
[0098] As a result of analyzing 7 types of reference standards (zymosterol, ergosterol, lathosterol, 7-dehydrocholesterol, 7-dehydrodesmosterol, desmosterol and cholesterol) by the analysis method described above (see
Experimental Example 1
HPLC Assay on Sterol-Producing Strain Prepared by erg5, erg6 Deletion and DHCR24, DHCR7 Expression
[0099] As a result of HPLC-UV/Vis analysis, a cholesterol peak was able to be found in the erg5::D24/erg6::D7 or, erg6::D24/erg5::D7 strain, the cholesterol productivity of the erg5::D24/erg6::D7 (#19) strain was 3.1 ppm, and the cholesterol production amount of the erg6::D24/erg5::D7 (#S1) strain was 7.5 ppm (Table 4). However, the content of a cholesterol precursor, such as zymosterol, dehydrodesmosterol or desmosterol was very high (
Experimental Example 2
HLPC Assay on Sterol-Producing Strain Prepared by Multiple DHCR24 Integration
[0100] As a result of the HPLC assay on a strain into which an NTS-DHCR24-86TRP1 cassette was additionally introduced using a rDNA-NTS-based multiple integration cassette system developed by the inventors to increase the production amount of cholesterol (a .sub.NTSD24/#19 recombinant strain), a peak of 7.4 ppm cholesterol production was found, which is approximately 2.4-fold higher than a #19 strain (
Experimental Example 3
qPCR and HPLC Assay for Recombinant Strain Prepared by DHCR24, DHCR7 Multiple Integration
[0101] As a qPCR result of analyzing the number of cassettes in a .sub.NTSD24D7/#19 recombinant strain obtained by multiple integration of an NTS-DHCR24-DHCR7-86TRP1 cassette having both cassettes expressing DHCR24 and DHCR7 genes, it was confirmed that strains having 3 or 4 cassettes were able to be obtained (
Experimental Example 4
HPLC Assay for Recombinant Strain Prepared through ERG27-ERG2 Fusion Gene, ERG3 and UPC2-1 Overexpression
[0102] As a result of a HPLC assay for strains further expressing ERG27, ERG2 and ERG3 genes involved in cholesterol production from zymosterol to further increase cholesterol production efficiency of the prepared .sub.NTSD24D7/#19 recombinant strain, compared to the .sub.NTSD24D7/#19, it was confirmed that the difference in cholesterol production amount was not large in E3E2/.sub.NTSD24D7/#19, E3E27-2/.sub.NTSD24D7/#19, and UPC2-1/.sub.NTSD24D7/#19 recombinant strains (Table 4,
Experimental Example 5
Analysis of Production Amounts of Cholesterol and Precursor Thereof in HPLC-CAD-Based Recombinant Strains
[0103] The productivity of cholesterol and precursors thereof was analyzed by a HPLC-CAD-based analysis method, and a result thereof is shown in
[0104] The production amounts of cholesterol and precursors thereof in the recombinant strain prepared by the method described above are summarized in Table 4.
TABLE-US-00006 TABLE 4 HPLC-CAD-based comparative analysis of production amounts of cholesterol and precursor thereof in recombinant strains introduced culture Concentration (ppm) Strains gene (copy #) medium E Z L 7-dc 7-dm D C OD.sub.600 nm CEN.PK(WT) — SC 5.5 6.7 2.2 0 0 0 0 12.7 #19 DHCR7(1), 0 10.5 0 1.9 23.4 4.5 3.1 8.3 (erg5::D24/erg6::D7) DHCR24(1) #S1 0 25.0 0 3.4 19.8 5.2 7.5 16.8 (erg6::D24/erg5::D7) .sub.NTSD7/#19 DHCR7(5), 0 7.3 0 0.5 17.6 10.6 3.8 7.9 DHCR24(1) .sub.NTSD7/#S1 DHCR7(4), 0 21.9 0 1.9 19.9 15.0 9.0 20.7 DHCR24(1) .sub.NTSD24/#19 DHCR7(1), 0 16.4 0 4.3 15.0 2.6 7.4 9.1 DHCR24(4) .sub.NTSD24/#S1 DHCR7(1), 0 22.2 0 2.5 13.2 6.3 11.5 19.1 DHCR24(4) .sub.NTSD24D7/#19 DHCR7(4), 0 14.1 0 1.9 16.4 6.3 9.0 9.3 DHCR24(4) .sub.2μD24D7/#S1 DHCR7(~10), 0 17.8 0 2.1 11.2 5.8 11.1 9.5 DHCR24(~10) E3E2/.sub.NTSD24D7/#19 DHCR7(4), 0 8.4 0 1.9 17.0 7.0 11.5 7.2 DHCR24(4), ERG3(~10), ERG2(~10) E3E27-2/.sub.NTSD24D7/#19 DHCR7(4), 0 17.0 0 2.6 28.1 6.2 9.0 6.2 DHCR24(4), ERG3(~10), ERG27-ERG2 fusion(~10) UPC2-1/.sub.NTSD24D7/#19 DHCR7(4), 0 12.2 0 2.0 17.2 5.3 7.9 7.2 DHCR24(4), UPC2-1(1~2)
[0105] (E: Ergosterol, Z: Zymosterol, 7-dc: 7-dehydrocholesterol, 7-dm: 7-dehydrodesmosterol, D: Desmosterol, C: Cholesterol)
[0106] (Strains: CEN.PK (WT), #19, #S1, .sub.NTSD7/#19, .sub.NTSD7/#S1, .sub.NTSD24/#19, .sub.NTSD24/#S1, .sub.NTSD24D7/#19, .sub.2μD24D7/#S1, E3E2/.sub.NTSD24D7/#19, E3E27-2/.sub.NTSD24D7/#19, UPC2-1/.sub.NTSD24D7/#19)
Experimental Example 6
HPLC-UV/Vis Assay for Recombinant Strain from which ARE2, which is a Main Gene for Sterol Esterification, was deleted
[0107] Among ARE1 and ARE2 genes (Hohmann H-P et. al. 2017) involved in esterification and lipid droplet storage to store surplus intracellular sterols in yeast cells, it was tried to delete ARE2, which plays a major role in aerobic growth, in the .sub.NTSD24D7/#19 strain using a gene disruption technique by homologous recombination (
Experimental Example 7
Analysis of Sterol-Producing Recombinant Yeast S. Cerevisiae for Wild-Type Strain
[0108] Among the previously attempted strategies, in a strategy in which a wild-type strain was first subjected to the multiple integration of NTS-DHCR24-DHCR7-86TRP1 cassettes and then ERG6 deletion as a method of increasing the number of inserted NTS-DHCR24-DHCR7-86TRP1 cassettes on the chromosome using a multiple integration cassette system, as a first step, the number of inserted cassettes in the prepared .sub.NTSD24D7/WT recombinant strain was analyzed by qPCR, thereby obtaining several candidate strains in which 4 to 10 cassettes were inserted (
Experimental Example 8
[0109] Analysis of amounts of growth and by-product accumulation of sterol-producing recombinant strains #S1 and #19
[0110] As a result of confirming the amount of metabolic by-product accumulation of the prepared strain, by-products such as ethanol and acetate were accumulated after the final culture in the #19 (erg5::D24/erg6::D7) strain, whereas there were a small quantity of acetate accumulation but no accumulation of a major metabolic by-product, ethanol, in the #S1 (erg6::D24/erg5::D7) strain, and therefore, the same pattern as the wild type was able to be confirmed. In addition, as a result of analysis of a cell growth amount, since the OD600 of the #19 (erg5::D24/erg6::D7) strain was approximately 14.8, it was confirmed that growth was inhibited compared to the OD600 of each of the wild-type strain (WT) and the #S1 (erg6::D24/erg5::D7) strain, which were approximately 46.5 and 57.3 (Table 5).
TABLE-US-00007 TABLE 5 Comparative analysis of amounts of growth and by-product accumulation in recombinant strains #S1 and #19 By-product & Cell culture Residual C-source(mg/L) growth Strains medium Acetate Ethanol Glucose OD.sub.600 nm CEN.PK(WT) YPD 0 0 0 46.5 #19 385 7501 0 14.8 (erg5::D24/erg6::D7) #S1 8 0 0 57.3 (erg6::D24/erg5::D7)
Experimental Example 9
[0111] Analysis of production amounts of cholesterol and precursor thereof in #S1-derived strain and DHCR gene codon-optimized strains in SC or YPD medium
[0112] As a result of the analysis of a cell production amount and a by-product accumulation amount, it is suggested that, compared to the #19 (erg5::D24/erg6::D7) strain, the #S1 (erg6::D24/erg5::D7) strain with high growth and less by-product accumulation is more suitable as an industrial strain. Accordingly, the cholesterol and precursor production amounts of the #S1-derived recombinant strains cultured in a SC or YPD medium were measured, and detailed comparative analysis was performed using a HPLC-CAD-based LC chromatogram (Table 6). In the culture in the YPD medium, compared to the culture in the SC medium, cell growth was high and a total cholesterol production amount was large. On the other hand, in the culture in the SC medium, it was able to be confirmed that the cholesterol production amount per cell was high.
TABLE-US-00008 TABLE 6 Analysis of production amount of cholesterol and precursor thereof in #S1 (erg6::D24/erg5::D7)-derived recombinant strains in SC or YPD medium using HPLC-CAD-based HPLC chromatogram culture Concentration (ppm) Strains medium E Z L 7-dc 7-dm D C OD.sub.600 nm CEN.PK(WT) SC 5.1 10.2 1.8 1.8 0.0 0.0 0.0 17.0 #S1(erg6::D24/erg5::D7) 0 25.0 0 3.4 19.8 5.2 7.5 16.8 .sub.NTSD7/#S1 0 21.9 0 1.9 19.9 15.0 9.0 20.7 .sub.NTSD24/#S1 0 22.2 0 2.5 13.2 6.3 11.5 19.1 .sub.2μD24D7/#S1 0 17.8 0 2.1 11.2 5.8 11.1 9.5 CEN.PK(WT) VPD 5.8 11.6 2.8 4.2 1.7 0 0 42.2 #S1(erg6::D24/erg5::D7) 0 30.7 1.6 1.5 19.7 13.3 9.4 59.0 .sub.NTSD7/#S1 0 26.7 1.2 0.8 19.5 22.4 9.0 62.1 .sub.NTSD24/#S1 0 33.0 2.5 3.4 15.0 8.4 15.0 64.5 .sub.2μD24D7/#S1 0 29.3 0 2.5 22.3 15.3 12.9 18.7
[0113] (E: Ergosterol, Z: Zymosterol, 7-dc: 7-dehydrocholesterol, 7-dm: 7-dehydrodesmosterol, D: Desmosterol, C: Cholesterol)
[0114] (Strains: CEN.PK (WT), #S1, .sub.NTSD7/#S1, .sub.NTSD24/#S1, .sub.2μD24D7/#S1)
[0115] In addition, as a result of a HPLC assay for the .sub.NTSD7/.sub.NTSD24/#S1 recombinant strain, it was able to be confirmed that a 9.3 ppm cholesterol production peak was found, which is approximately 1.7-fold higher than the #S1 strain (
TABLE-US-00009 TABLE 7 Analysis of production amounts of cholesterol and precursor thereof in recombinant strains using HPLC-CAD-based HPLC chromatogram Culture Aver. Concentration (mg/L) Strains condition E Z L 7-dc 7-dm D C CEN.PK YPD, 21.4 7.0 2.0 0 0 0 0 #19 5 days 0 3.5 0 0 3.3 5.3 2.4 #S1 0 0 0.5 0.9 6.2 5.9 5.2 D7/D24/S1 0 27.2 0 0 1.9 11.4 9.3 #cc19 0 6.1 0 0 0 0 30.1 #ccS1 0 6.0 0 0 0 0 29.4 (7-dm: 7-dehydrodesmosterol, 7-dc: 7-dehydrocholesterol, Z: Zymosterol, D: Desmosterol, E: Ergosterol, L: Lathosterol, C: Cholesterol, D7/D24/S1: .sub.NTSD7/NTS D24/#S1)
[0116] In addition, the result of the HPLC assay, compared to #cc19 and #ccS1 strains, tHMG1/#cc19, tHMG1/#ccS1 strains showed a pattern in which all of squalene, oxidosqualene, lanosterol and zymosterol are accumulated, and approximately 1.3 to 1.5-fold higher cholesterol production amounts when comparing HPLC chromatogram peak areas (