COXSACKIE VIRUS B FOR TREATING TUMORS
20210154249 · 2021-05-27
Inventors
- Tong Cheng (Xiamen, CN)
- Wei Wang (Xiamen, CN)
- Xiangzhong YE (Xiamen, CN)
- Wenkun Fu (Xiamen, CN)
- Dequan PAN (Xiamen, CN)
- Jun Zhang (Xiamen, CN)
- Ningshao Xia (Xiamen, CN)
Cpc classification
C12N7/00
CHEMISTRY; METALLURGY
C12N2770/32321
CHEMISTRY; METALLURGY
A61K35/768
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C12N2770/32332
CHEMISTRY; METALLURGY
C12N15/86
CHEMISTRY; METALLURGY
C12N2770/32343
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
Abstract
Provided are Coxsackie virus CVB1 or a modified form thereof, or a genomic sequence or cDNA sequence comprising CVB1 or the modified form thereof, or a nucleic acid molecule of a complement sequence of the genomic sequence or cDNA sequence, the use of same for treating tumors in subjects including humans, and the use of same in the preparation of a pharmaceutical composition for treating tumors in subjects including humans. Also provided is a method for treating tumors, comprising administering CVB1 or the modified form thereof, or the genomic sequence or cDNA sequence comprising CVB1 or the modified form thereof, or the nucleic acid molecule of the complement sequence of the genomic sequence or cDNA sequence to a subject in need thereof.
Claims
1. Use of a Coxsackievirus B1 (CVB1) or a modified form thereof or a nucleic acid molecule for treating a tumor in a subject, or for manufacture of a medicament for treating a tumor in a subject; wherein the nucleic acid molecule comprises a sequence selected from the following: (1) a genomic sequence or cDNA sequence of the CVB1 or modified form thereof; and (2) a complementary sequence of the genomic sequence or cDNA sequence.
2. Use according to claim 1, wherein the CVB1 is a wild-type CVB1; preferably, the CVB1 is a clinical isolate isolated from an individual infected with Coxsackievirus B1; preferably, the genomic sequence of the CVB1 or modified form thereof has a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 12; more preferably, the genomic sequence of the CVB1 or modified form thereof is a nucleotide sequence as shown in SEQ ID NO: 12; preferably, the cDNA sequence of the CVB1 or modified form thereof has a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 1; more preferably, the cDNA sequence of the CVB1 or modified form thereof is a nucleotide sequence as shown in SEQ ID NO: 1.
3. Use according to claim 1 or 2, wherein the modified form is a modified CVB1 which has a substitution, insertion or deletion of one or more nucleotides in its genome as compared to a wild-type CVB1; preferably, compared to the wild-type CVB1, the modified CVB1 has one or more modifications selected from the following: (1) one or more mutations in an untranslated region (e.g. 5′UTR or 3′UTR); (2) an insertion of one or more exogenous nucleic acids; (3) a deletion or mutation of one or more endogenous genes; and (4) any combination of the above three items.
4. Use according to claim 3, wherein the modified CVB1 comprises one or more mutations in a 5′ untranslated region (5′ UTR); preferably, the modified CVB1 has a substitution of all or part of the 5′UTR sequence; preferably, an internal ribosome entry site (IRES) sequence in the 5′UTR of the modified CVB1 is replaced with an exogenous IRES sequence, such as an internal ribosome entry site sequence of human rhinovirus 2 (HRV2); preferably, the internal ribosome entry site sequence of human rhinovirus 2 (HRV2) is shown in SEQ ID NO: 2.
5. Use according to claim 3 or 4, wherein the modified CVB1 comprises an exogenous nucleic acid; preferably, the exogenous nucleic acid encodes a cytokine (e.g., GM-CSF, preferably human GM-CSF), or an anti-tumor protein or polypeptide (e.g., scFV against PD-1 or PD-L1, preferably scFv against human PD-1 or PD-L1); preferably, the exogenous nucleic acid is inserted between 5′UTR and VP4 gene, or between VP1 gene and 2A gene of a genome of the modified CVB1; preferably, the exogenous nucleic acid comprises a target sequence of one or more (e.g., 2, 3, or 4) microRNA; preferably, the target sequence of microRNA is inserted in a 3′ untranslated region (3′UTR) of a genome of the modified CVB1; preferably, the exogenous nucleic acid comprises a target sequence of miR-133 and/or miR-206; preferably, the target sequence of miR-133 is shown in SEQ ID NO: 3; preferably, the target sequence of miR-206 is shown in SEQ ID NO:4.
6. Use according to any one of claims 3 to 5, wherein the modified CVB1 comprises at least one insertion of an exogenous nucleic acid as defined in claim 5 and/or at least one mutation in the untranslated region as defined in claim 4.
7. Use according to any one of claims 3 to 6, wherein the modified CVB1 has one of the following characteristics: (1) the genomic sequence of the modified CVB1 has a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence selected from the following: the nucleotide sequences as shown in SEQ ID NOs: 13-16; preferably the genomic sequence of the modified CVB1 is any one selected from the nucleotide sequences as shown in SEQ ID NOs: 13-16; 2) the cDNA sequence of the modified CVB1 has a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence selected from the following: the nucleotide sequences as shown in SEQ ID NOs: 8-11; preferably, the cDNA sequence of the modified CVB1 is any one selected from the nucleotide sequences as shown in SEQ ID NOs: 8-11.
8. Use according to any one of claims 1 to 7, wherein the medicament comprises one or several of the CVB1 and modified form thereof.
9. Use according to any one of claims 1 to 8, wherein the nucleic acid molecule consists of the genomic sequence or cDNA sequence of the CVB1 or modified form thereof, or a complementary sequence of the genomic sequence or cDNA sequence; preferably, the nucleic acid molecule has the genomic sequence of the CVB1 or modified form thereof; preferably, the nucleic acid molecule has a nucleotide sequence as shown in any one of SEQ ID NOs: 12-16.
10. Use according to any one of claims 1 to 8, wherein the nucleic acid molecule is a vector (e.g., a cloning vector or expression vector) comprising a genomic sequence or cDNA sequence of the CVB1 or modified form thereof, or a complementary sequence of the genomic sequence or cDNA sequence; preferably, the nucleic acid molecule is a vector (e.g., a cloning vector or expression vector) comprising the cDNA sequence of the CVB1 or modified form thereof, or the complementary sequence of the cDNA sequence; preferably, the nucleic acid molecule is a vector comprising a nucleotide sequence as shown in any one of SEQ ID NOs: 1, 8-11, or a complementary sequence thereof.
11. Use according to any one of claims 1 to 10, wherein the medicament further comprises an additional pharmaceutically active agent having anti-tumor activity, such as an additional oncolytic virus, chemotherapeutic agent or immunotherapeutic agent; preferably, the additional oncolytic virus is selected from the group consisting of herpes virus, adenovirus, parvovirus, reovirus, Newcastle disease virus, vesicular stomatitis virus, measles virus or any combination thereof, preferably, the chemotherapeutic agent is selected from the group consisting of 5-fluorouracil, mitomycin, methotrexate, hydroxyurea, cyclophosphamide, dacarbazine, mitoxantrone, anthracyclines (e.g., epirubicin or doxorubicin), etoposide, platinum compounds (e.g., carboplatin or cisplatin), taxanes (e.g., paclitaxel or docetaxel), or any combination thereof; preferably, the immunotherapeutic agent is selected from the group consisting of immune checkpoint inhibitors (e.g., PD-L1/PD-1 inhibitors or CTLA-4 inhibitors), tumor-specific targeting antibodies (e.g., rituximab or herceptin), or any combination thereof.
12. Use according to any one of claims 1 to 11, which has at least one of the following characteristics: (1) the tumor is selected from the group consisting of colorectal cancer, gastric cancer, lung cancer, liver cancer, ovarian cancer, endometrial cancer, cervical cancer, melanoma, breast cancer, kidney cancer, pancreatic cancer, lymphoma, osteogenic sarcoma, prostate cancer, glioma, neuroblastoma, tongue cancer, nasopharyngeal cancer, squamous cell carcinoma of nasal septum, pharyngeal squamous cell carcinoma, squamous cell carcinoma of submandibular gland, laryngeal cancer, thyroid cancer, thyroid ductal carcinoma and bladder cancer; (2) the subject is a mammal, such as a human.
13. A method for treating a tumor, comprising a step of administering to a subject in need thereof an effective amount of a CVB1 or a modified form thereof, or an effective amount of a nucleic acid molecule; wherein the nucleic acid molecule comprises a sequence selected from the following: (1) a genomic sequence or cDNA sequence of the CVB1 or modified form thereof; and (2) a complementary sequence of the genomic sequence or cDNA sequence; preferably, the CVB1 or modified form thereof, or the nucleic acid molecule is defined as in any one of claims 1 to 12; preferably, one or more of the CVB1 and modified form thereof is administered to the subject; preferably, the tumor is selected from the group consisting of colorectal cancer, gastric cancer, lung cancer, liver cancer, ovarian cancer, endometrial cancer, cervical cancer, melanoma, breast cancer, kidney cancer, pancreatic cancer, lymphoma, osteogenic sarcoma, prostate cancer, glioma, neuroblastoma, tongue cancer, nasopharyngeal cancer, squamous cell carcinoma of nasal septum, pharyngeal squamous cell carcinoma, squamous cell carcinoma of submandibular gland, laryngeal cancer, thyroid cancer, thyroid ductal carcinoma and bladder cancer; preferably, the subject is a mammal, such as a human.
14. A pharmaceutical composition, comprising a CVB1 or a modified form thereof, or a nucleic acid molecule; and, a pharmaceutically acceptable carrier or excipient; wherein the nucleic acid molecule comprises a sequence selected from the following: (1) a genomic sequence or cDNA sequence of the CVB1 or modified form thereof; and (2) a complementary sequence of the genomic sequence or cDNA sequence; preferably, the CVB1 or modified form thereof, or the nucleic acid molecule is defined as in any one of claims 1 to 12; preferably, the pharmaceutical composition further comprises an additional pharmaceutically active agent having anti-tumor activity, such as an additional oncolytic virus, chemotherapeutic agent or immunotherapeutic agent; preferably, the pharmaceutical composition is used for treating a tumor in a subject; preferably, the tumor is selected from the group consisting of colorectal cancer, gastric cancer, lung cancer, liver cancer, ovarian cancer, endometrial cancer, cervical cancer, melanoma, breast cancer, kidney cancer, pancreatic cancer, lymphoma, osteogenic sarcoma, prostate cancer, glioma, neuroblastoma, tongue cancer, nasopharyngeal cancer, squamous cell carcinoma of nasal septum, pharyngeal squamous cell carcinoma, squamous cell carcinoma of submandibular gland, laryngeal cancer, thyroid cancer, thyroid ductal carcinoma and bladder cancer; preferably, the subject is a mammal, such as a human.
15. A modified CVB1, which has a substitution of an internal ribosome entry site (IRES) sequence in a 5′UTR with an internal ribosome entry site sequence of human rhinovirus 2 (HRV2) as compared to a wild-type CVB1.
16. The modified CVB1 according to claim 15, wherein the modified CVB1 has at least one of the following characteristics: 1) the internal ribosome entry site sequence of human rhinovirus 2 (HRV2) is shown in SEQ ID NO: 2; 2) the wild-type CVB1 has a genomic sequence with a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 12; preferably, the genomic sequence of the wild-type CVB1 is a nucleotide sequence as shown in SEQ ID NO: 12; 3) the wild type CVB1 has a cDNA sequence with a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 1; preferably, the cDNA sequence of the wild-type CVB1 is a nucleotide sequence as shown in SEQ ID NO: 1;
17. The modified CVB1 according to claim 15 or 16, wherein the modified CVB1 further comprises an exogenous nucleic acid; preferably, the exogenous nucleic acid encodes a cytokine (e.g., GM-CSF, preferably human GM-CSF), or an anti-tumor protein or polypeptide (e.g., scFv against PD-1 or PD-L1, preferably scFv against human PD-1 or PD-L1); preferably, the exogenous nucleic acid is inserted between 5′UTR and VP4 gene, or between VP1 gene and 2A gene of a genome of the modified CVB1; preferably, the exogenous nucleic acid comprises a target sequence of one or more (e.g., 2, 3 or 4) microRNA; preferably, the target sequence of microRNA is inserted in a 3′ untranslated region (3′UTR) of a genome of the modified CVB1; preferably, the exogenous nucleic acid comprises a target sequence of miR-133 and/or miR-206; preferably, the target sequence of miR-133 is shown in SEQ ID NO: 3; preferably, the target sequence of miR-206 is shown in SEQ ID NO:4.
18. The modified CVB1 according to any one of claims 15 to 17, wherein the modified CVB1 has one of the following characteristics: 1) the modified CVB1 has a genomic sequence with a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 13; preferably the genomic sequence of the modified CVB1 is a nucleotide sequence as shown in SEQ ID NO: 13; 2) the modified CVB1 has a cDNA sequence with a sequence identity of at least 70%, at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% to a nucleotide sequence as shown in SEQ ID NO: 8; preferably the cDNA sequence of the modified CVB1 is a nucleotide sequence as shown in SEQ ID NO: 8.
19. A nucleic acid molecule, comprising a sequence selected from the following: (1) a genomic sequence or cDNA sequence of the modified CVB1 according to any one of claims 15 to 18; and (2) a complementary sequence of the genomic sequence or cDNA sequence.
20. The nucleic acid molecule according to claim 19, wherein the nucleic acid molecule consists of the genomic sequence or cDNA sequence of the modified CVB1, or the complementary sequence of the genomic sequence or cDNA sequence; preferably, the nucleic acid molecule has the genomic sequence of the modified CVB1; preferably, the nucleic acid molecule has a nucleotide sequence as shown in SEQ ID NO: 13.
21. The nucleic acid molecule according to claim 19, wherein the nucleic acid molecule is a vector (e.g., a cloning vector or expression vector) comprising the genomic sequence or cDNA sequence of the modified CVB1, or the complement of the genomic sequence or cDNA sequence; preferably, the nucleic acid molecule is a vector (e.g., a cloning vector or an expression vector) comprising the cDNA sequence of the modified CVB1, or the complementary sequence of the cDNA sequence; preferably, the nucleic acid molecule is a vector comprising a nucleotide sequence as shown in SEQ ID NO: 8 or complementary sequence thereof.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0178]
[0179]
[0180]
[0181]
[0182]
SEQUENCE INFORMATION
[0183] Information of parts of sequences involved in the present invention is provided in Table 1 below.
TABLE-US-00001 TABLE 1 Description of the sequences SEQ ID NO: Description 1 cDNA sequence of wild type CVB1 (CVB1-WT) 2 RNA sequence of internal ribosome entry site sequence of human rhinovirus 2 (HRV2) 3 RNA sequence of miR-133 target sequence 4 RNA sequence of miR-206 target sequence 5 RNA sequence of tandem sequence of miR-133 target sequence and miR-206 target sequence 6 DNA sequence of human granulocyte-macrophage colony stimulating factor (GM-CSF) gene 7 DNA sequence of anti-PD-1 single chain antibody (Anti-PD-1 scFv) 8 cDNA sequence of the modified form of CVB1 (CVB1-HRV2) 9 cDNA sequence of the modified form of CVB1 (CVB1-miR133&206T) 10 cDNA sequence of the modified form of CVB1 (CVB1-GM-CSF) 11 cDNA sequence of the modified form of CVB1 (CVB1-Anti-PD1) 12 Genomic sequence of wild type CVB1 (CVB1-WT) 13 Genomic sequence of the modified form of CVB1 (CVB1-HRV2) 14 Genomic sequence of the modified form of CVB1 (CVB1-miR133&206T) 15 Genomic sequence of the modified form of CVB1 (CVB1-GM-CSF) 16 Genomic sequence of modified form of CVB1 (CVB1-Anti-PD1) 17 DNA sequence of miR-133 target sequence 18 DNA sequence of miR-206 target sequence 19 DNA sequence of tandem sequence of miR-133 target sequence and miR-206 target sequence 20 DNA sequence of internal ribosome entry site sequence of human rhinovirus 2 (HRV2)
Specific Models for Carrying Out the Invention
[0184] The present invention will now be described with reference to the following examples intended to illustrate the invention (not to limit the invention).
[0185] Unless otherwise specified, the molecular biology experimental methods and immunoassays used in the present invention basically referred to J. Sambrook et al., Molecular Cloning: A Laboratory Manual, 2.sup.nd Edition, Cold Spring Harbor Laboratory Press, 1989, and F M Ausubel et al., Short Protocols in Molecular Biology, 3.sup.rd Edition, John Wiley & Sons, Inc., 1995. The use of restriction enzymes was in accordance with the conditions recommended by the product manufacturers. If no specific conditions were indicated in the examples, the conventional conditions or the conditions recommended by the manufacturers should be followed. The used reagents or instruments, of which manufacturers were not given, were all conventional products that were commercially available. Those skilled in the art know that the examples describe the present invention by way of example, and are not intended to limit the claimed scope of the invention. All publications and other references mentioned herein are incorporated by reference in their entirety.
Example 1: Acquisition and Preparation of CVB1 and Modified Forms Thereof
[0186] 1.1 Isolation of Enterovirus CVB1 from Clinical Specimens of Patients
[0187] (1) The pharyngeal and anal swabs of patients were from the Center for Disease Control and Prevention of Xiamen City, China; African green monkey kidney cells (Vero cells; ATCC® Number: CCL-81™) were preserved by the National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, China, and were cultured in MEM medium supplemented with 10% fetal bovine serum, glutamine, penicillin and streptomycin.
[0188] (2) Sample processing: the pharyngeal swabs and anal swabs of patients were sufficiently agitated in a specimen preservation solution to wash off the virus and virus-containing cells adhering to the swabs, and then the specimen preservation solution was subjected to high speed centrifugation at 4000 rpm and 4° C. for 30 min;
[0189] (3) Inoculation and observation:
[0190] A. Vero cells were plated in a 24-well plate with 1×10.sup.5 cells/well. The growth medium (MEM medium, containing 10% fetal bovine serum, as well as glutamine, penicillin and streptomycin) was aspirated, and 1 mL of maintenance medium (MEM medium, containing 2% fetal calf serum, as well as glutamine, penicillin and streptomycin) was added in each well. Then except the negative control wells, each well was inoculated with 50 μL of the sample supernatant, and cultured in an incubator at 37° C., 5% CO.sub.2.
[0191] B. The cells were observed under a microscope every day for one week, and the occurrence of specific cytopathic effect (CPE) in the inoculated wells was recorded.
[0192] C. If the enterovirus-specific cytopathic effect appeared in the cells in the inoculated wells within 7 days, the cells and supernatant were collected and frozen at −80° C.; if no CPE appeared after 7 days, the cells were subjected to blind passage.
[0193] D. If CPE appeared within 6 blind passages, the cells and supernatant were collected and frozen at −80° C.; If CPE did not appear after 6 blind passages, the cells were determined as negative.
[0194] (4) Virus Isolation and Cloning:
[0195] The viruses isolated from the clinical specimens were identified by RT-PCR (Hou et al., Virus Res 2015, 205: 41-44) and specific antibody-based enzyme-linked immunospot assay (ELISPOT) (Yang et al. Clin Vaccine Immunol 2014, 21(3): 312-320), and Coxsackievirus B1 positive cultures were selected and subjected to at least 3 cloning experiments. The virus clones obtained by the limiting dilution method in each experiment were also identified by RT-PCR and ELISPOT, and Coxsackievirus B1 positive clones were selected and subjected to the next round of cloning. A single strain of Coxsackievirus B1 with strong growth viability were selected as a candidate oncolytic virus strain.
[0196] 1.2 Obtaining Rescued Strains of CVB1 and Modified Forms Thereof Based on Infectious Cloning and Reverse Genetics Technology
[0197] This example used the wild-type CVB1 (SEQ ID NO: 1) as an example to show how to obtain CVB1 and modified forms thereof used in the present invention by reverse genetics technology. The specific method was as follows.
[0198] (1) Construction of viral infectious clones: The cDNA sequence of the wild-type CVB1 (named CVB1-WT) was shown in SEQ ID NO:1, and its genomic RNA sequence was shown in SEQ ID NO:12; or the gene insertion or substitution based on the cDNA of the wild-type CVB1 (SEQ ID NO:1), comprising:
[0199] Modified form 1: The internal ribosome entry site sequence of the wild-type CVB1 was replaced with the internal ribosome entry site sequence of human rhinovirus 2 (which has a DNA sequence shown in SEQ ID NO: 20), to obtain the cDNA (SEQ ID NO: 8) of a recombinant virus (named as CVB1-HRV2), which has a genomic RNA sequence shown as SEQ ID NO: 13;
[0200] Modified form 2: The tandem sequence (which has a DNA sequence shown in SEQ ID NO: 19) of the miR-133 target sequence (which has a DNA sequence shown in SEQ ID NO: 17) and the miR-206 target sequence (which has a DNA sequence shown in SEQ ID NO: 18) was inserted between 7303-7304 bp of the 3′ untranslated region of the cDNA (SEQ ID NO: 1) of the wild-type CVB1, to obtain the cDNA (SEQ ID NO: 9) of a recombinant virus (named CVB1-miR133&206T), which has a genomic RNA sequence shown as SEQ ID NO: 14;
[0201] Modified form 3: The human granulocyte-macrophage colony stimulating factor (GM-CSF) gene (SEQ ID NO: 6) was inserted between the VP1 gene and 2A gene of the cDNA (SEQ ID NO: 1) of wild-type CVB1 to obtain the cDNA (SEQ ID NO: 10) of a recombinant virus (named CVB1-GM-CSF), which has a genomic RNA sequence shown as SEQ ID NO: 15;
[0202] Modified form 4: The sequence (SEQ ID NO: 7) encoding the single chain antibody against human programmed death receptor 1 (Anti-PD-1 scFv) was inserted into the VP1 gene and the 2A gene of wild-type CVB1 to obtain the cDNA (SEQ ID NO: 11) of a recombinant virus (named CVB1-Anti-PD-1), which has a genomic RNA sequence shown as SEQ ID NO: 16.
[0203] The cDNA sequences (SEQ ID NOs: 1, 8-11) of the above five oncolytic viruses were sent to the gene synthesis company (Shanghai Shenggong Bioengineering Co., Ltd.) for full gene synthesis, and ligated into pSVA plasmids (Hou et al. Human, Virus Res 2015, 205: 41-44), thereby obtaining infectious cloning plasmids of the CVB1 or its modified forms (i.e., CVB1-WT, CVB1-HRV2, CVB1-miR133&206T, CVB1-GM-CSF and CVB1-Anti-PD-1).
[0204] (2) Plasmid mini-kit and E coli. DH5a competent cells were purchased from Beijing Tiangen Biochemical Technology Co., Ltd.; Hela cells (ATCC® Number: CCL-2™) and human rhabdomyosarcoma cells (RD cells; ATCC® Number: CCL-i36™) were kept by National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, China, and were cultured with DMEM and MEM media respectively, in which 10% fetal bovine serum as well as glutamine, penicillin and streptomycin were added; transfection reagents Lipofactamine2000 and Opti-MEM were purchased from Thermo Fisher Scientific Company.
[0205] (3) The infectious cloning plasmids containing the cDNA sequences of the above five oncolytic viruses were transformed into E coli DH5a competent cells, the monoclonal strains were picked out and shaken after the outgrowth of clones, and the plasmids were extracted using the plasmid mini-kit, and then sent to the company (Shanghai Biotech Engineering Co., Ltd.) for sequencing analysis.
[0206] (4) The infectious cloning plasmids with correct sequence and the helper plasmid pAR3126 were co-transfected into the cells to rescue virus (Hou et al. Virus Res 2015, 205: 41-44). Hela cells were first transfected according to the instructions of the transfection reagent; then observed under a microscope. When CPE appeared in Hela cells, the cells and culture supernatant were harvested, and inoculated with RD cells followed by passaging and culturing. The rescued strains obtained thereby can be used as the candidate strain of oncolytic virus.
Example 2: In Vitro Anti-Tumor Experiment of CVB1 and its Modified Forms
[0207] 2.1 Viruses and Cell Lines as Used
[0208] (1) Viruses: In this example, the CVB1-WT (SEQ ID NO: 12), CVB1-HRV2 (SEQ ID NO: 13), CVB1-miR133&206T (SEQ ID NO: 14), CVB1-GM-CSF (SEQ ID NO: 15) and CVB1-Anti-PD-1 (SEQ ID NO: 16) as provided in Example 1 and a strain of wild-type Coxsackievirus B type 3 (hereinafter referred to as: CVB3-WT; GenBank database accession number: KY286529.1) were used.
[0209] (2) Cell lines: human rhabdomyosarcoma cell RD (ATCC® Number: CCL-136™); human colorectal cancer cell lines SW1116 (ATCC® Number: CCL-233™), SW480 (ATCC® Number: CCL-228™) and HT-29 (ATCC® Number: HTB-38™); human gastric cancer cell lines AGS (ATCC® Number: CRL-1739™), SGC7901 (CCTCC deposit number: GDC150), BGC823 (CCTCC deposit number: GDC151) and NCI-N87 (ATCC® Number: CRL-5822™); human esophageal cancer cell line TE-1 (purchased from the Cell Resource Center, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, No. 3131C0001000700089); human small cell lung cancer cell line DMS114 (ATCC® Number: CRL-2066™); human non-small cell lung cancer cell lines SPC-A-1 (CCTCC deposit number: GDC050), NCI-H1975 (ATCC® Number: CRL-5908™), NCI-H1299 (ATCC® Number: CRL-5803™), A549 (ATCC® Number: CCL-185™), NCI-H661 (ATCC® Number: HTB-183™), EBC-1 (Thermo Fisher Scientific, Catalog #: 11875101) and NCI-H1703 (ATCC® Number: CRL-5889™); human liver cancer cell lines C3A (ATCC® Number: CRL-10741™), HepG2 (ATCC® Number: HB-8065™), SMMC7721 (purchased from the Basic Medical Cell Center, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, Number: 3111C0001CCC000087), BEL7402 (CCTCC deposit number: GDC035), BEL7404 (purchased from the Cell Resource Center, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, number: 3131C0001000700064), Huh? (CCTCC deposit number: GDC134) and PLC/PRF/5 (ATCC® Number: CRL-8024™); human ovarian cancer cell lines SKOV3 (ATCC® Number: HTB-77™) and Caov3 (ATCC® Number: HTB-75™); human endometrial cancer cell lines Hec-1-A (ATCC® Number: HTB-112™), Hec-1-B (ATCC® Number: HTB-113™) and Ishikawa (ECACC No. 99040201); human cervical cancer cell lines Hela (ATCC® Number: CCL-2™), Caski (ATCC® Number: CRL-1SSO™) and C-33A (ATCC® Number: HTB-31™); human melanoma cell lines SK-MEL-1 (ATCC® Number: HTB-67™) and MeWo (ATCC® Number: HTB-65™); human breast cancer cell lines BcaP37 (CCTCC deposit number: GDC206), BT-474 (ATCC® Number: HTB-20™) and MDA-MB-231 (ATCC® Number: HTB-26™); human kidney cancer cell lines A-498 (ATCC® Number: HTB-44™) and 786-0 (ATCC® Number: CRL-1932™); human pancreatic cancer cell lines Capan-2 (ATCC® Number: HTB-80™), AsPC-1 (ATCC® Number: CRL-1682™), SW1990 (ATCC® Number: CRL-2172™), HPAF-2 (ATCC® Number: CRL-1997™) and CFPAC-1 (ATCC® Number: CRL-1918™); human osteosarcoma cell line U2OS (ATCC® Number: HTB-96™); human prostate cancer cell lines DU145 (ATCC® Number: HTB-81™) and LNCap (ATCC® Number: CRL-1740™); human neuroglioma cell line GBM (primary tumor cell line isolated from a patient tumor tissue); human neuroblastoma cell line SH-SYSY (ATCC® Number: CRL-2266™); human tongue squamous carcinoma cell lines CAL27 (ATCC® Number: CRL-2095™) and SCC-25 (ATCC® Number: CRL-1628™); human nasopharyngeal carcinoma cell line CNE (purchased from the Center for Basic Medical Cells, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, No.: 3131C0001000700013); human nasal septum squamous cell carcinoma cell line RPMI 2650 (ATCC® Number: CCL-30™); human laryngeal carcinoma cell line HEp-2 (ATCC® Number: CCL-23™); human thyroid cancer cell lines SW579 (preserved by the National Engineering Research Center for Diagnostic Reagents and Vaccines for Infectious Disease) and human thyroid ductal carcinoma cell line TT (ATCC® Number: CRL-1803™); human bladder cancer cell lines J82 (ATCC® Number: HTB-1™) and 5637 (ATCC® Number: HTB-9™); human Burkitt's lymphoma cell lines Daudi (ATCC® Number: CCL-213™) and Raji (ATCC® Number: CCL-86™); human normal cell lines including: human pancreatic ductal epithelial cell line hTERT-HPNE (ATCC® Number: CRL-4023™), human skin keratinocyte cell line HaCat (CCTCC, deposit number: GDC106), human embryonic lung fibroblast cell line MRC-5 (ATCC® Number: CCL-171™), human foreskin fibroblast cell line HFF-1 (ATCC® Number: SCRC-1041™), human prostate stromal cell line WPMY-1 (ATCC® Number: CRL-2854™), human umbilical vein endothelial cell line HUVEC (Thermo Fisher Scientific, Catalog #: C01510C) and the differentiated human liver progenitor cell line HepaRG (with the characteristics of primary hepatocytes; Thermo Fisher Scientific, Catalog #: HPRGC10). The above cells were all preserved by National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, China. HepaRG cells were cultured in WME medium (added with 1.5% DMSO); AGS and TT were cultured in F-12K medium; SH-SYSY was cultured in DMEM:F12 (1:1) medium; CFPAC-1 was cultured in IMDM medium; RD, C-33A, EBC-1, SK-MEL-1, J82 and DU145 were cultured in MEM medium; Raji, Daudi, 5637, 786-0, TE-1, Caski, NCI-H1299, NCI-H1703, NCI-H1975, NCI-H661, SGC7901, BGC823, SW1116, HEp-2 and LNCap were cultured in RPMI-1640 medium; and other cells were cultured in DMEM medium. These mediums were all supplemented with 10% fetal bovine serum, glutamine and penicillin-streptomycin. All the above cells were cultured under standard conditions of 37° C. and 5% CO.sub.2.
[0210] 2.2 Cultivation of Virus
[0211] The RD cells were evenly plated on 10 cm cell culture plates, under the culturing conditions of MEM medium containing 10% fetal bovine serum, glutamine, penicillin and streptomycin, 37° C., 5% CO.sub.2, and saturated humidity. When the cell confluence reached 90% or more, the cell culture medium was replaced with serum-free MEM medium, and each plate was inoculated with 10.sup.7 TCID50 of CVB1-WT, CVB1-HRV2, CVB1-miR133&206T, CVB1-GM-CSF or CVB1-Anti-PD-1. After 24 hours of continuous cultivation, CVB1 or its modified forms proliferated in RD cells and caused CPE in the cells. When more than 90% of the cells turned contracted and rounded, showed increased graininess, and became detached and lysed, the cells and their culture supernatants were harvested. After freeze-thawing for three cycles, the culture supernatants were collected and centrifuged to remove cell debris, under the centrifugation conditions of 4000 rpm, 10 min, and 4° C. Finally, the supernatants were filtered with 0.22 μm disposable filter (Millipore) to remove all cell debris and other impurities.
[0212] 2.3 Determination of Virus Titer
[0213] The RD cells were coated in a 96-well plate with a cell density of 10.sup.4 cells/well. After the cells adhered, the virus solution obtained in Example 2.2 was subjected to a 10-fold gradient dilution starting at 10-fold with serum-free MEM medium. 50 μl of the diluted virus was added to the wells with cells. After 7 days, the wells where CPE appeared were monitored and recorded, followed by calculation using Karber method, in which the calculation formula was lg.sup.TCID50=L−D (S−0.5), L: logarithm of the highest dilution, D: difference between logarithms of dilutions, S: sum of proportions of positive wells. The unit of TCID50 thereby calculated was TCID50/50μ1, which should be converted into TCID50/ml.
[0214] 2.4 In Vitro Anti-Tumor Experiments of Viruses
[0215] The human tumor cells and normal cells were inoculated into 96-well plates at 10.sup.4 per well. After the cells adhered, the medium in each well was replaced with corresponding cell culture medium without serum, and viruses were inoculated at MOIs of 10, 1, 0.1 and 0.01, respectively. Then, CPE of the cells were monitored daily by a microscope.
[0216]
[0217] Cell Counting Kit-8 (CCK-8 kit; Shanghai Biyuntian Biotechnology Co., Ltd.) was used to detect cell survival rate after 72 hours of virus infection and culture. The specific methods were as follows:
[0218] For adherent cells, the original medium in a 96-well cell culture plate was directly discarded; for suspension cells, the original medium in a 96-well cell culture plate was carefully discarded after centrifugation; and then 100 μl of fresh serum-free medium was added per well. 10 μl of CCK-8 solution was added to each of the wells inoculated with cells, and an equal amount of CCK-8 solution was also added to the blank culture medium as a negative control, followed by incubation at 37° C. in a cell culture incubator for 0.5-3 hours. The absorbance was detected at 450 nm using a microplate reader at 0.5, 1, 2, 3 hours, respectively, and the time point where the absorbance was within a suitable range was selected as a reference for cell survival rate. The CCK-8 test results of CVB1-WT for each kind of cells were shown in Table 2, where “−” indicated that the cell survival rate after virus treatment was not significantly different from that of the MOCK group; “+” indicated that after virus treatment, the cell number was reduced, the survival rate was still greater than 50% but was significantly different from that of the MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group.
[0219] The calculation of cell survival rate is:
TABLE-US-00002 TABLE 2 Results of in vitro anti-tumor test of CVB1-WT MOI Cell lines 10 1 0.1 0.01 RD ++ ++ ++ + SW1116 ++ ++ ++ + SW480 ++ ++ ++ ++ HT29 ++ ++ ++ ++ AGS ++ ++ ++ ++ SGC7901 ++ ++ ++ + BGC823 ++ ++ ++ ++ NCI-N87 ++ ++ ++ − TE-1 ++ ++ ++ + DMS114 ++ ++ ++ ++ SPC-A-1 ++ ++ ++ ++ NCI-H1975 ++ ++ ++ + NCI-H1299 ++ ++ ++ ++ A549 ++ ++ ++ + NCI-H661 ++ ++ ++ ++ EBC-1 ++ ++ ++ ++ NCI-H1703 ++ ++ ++ + C3A ++ ++ ++ ++ HepG2 ++ ++ ++ ++ SMMC7721 ++ ++ ++ ++ BEL7404 ++ ++ ++ ++ BEL7402 ++ ++ ++ ++ Huh7 ++ ++ ++ ++ PLC/PRF/5 ++ ++ ++ ++ SKOV3 ++ ++ + − CaOV3 ++ ++ ++ − HEC-1-A ++ ++ ++ + HEC-1-B ++ ++ ++ ++ Ishikawa ++ ++ ++ ++ Hela ++ ++ ++ ++ CaSki ++ ++ ++ ++ C-33A ++ ++ ++ ++ SK-MEL-1 ++ ++ ++ + MeWo ++ ++ + − BcaP37 ++ ++ ++ ++ BT-474 ++ ++ ++ ++ MDA-MB-231 ++ ++ + − A498 ++ ++ ++ + 786-O ++ ++ + − Capan-2 ++ ++ + − HPAF-2 ++ ++ + + AsPC-1 ++ ++ ++ ++ SW1990 ++ ++ ++ + CFPAC-1 ++ ++ ++ + U2OS ++ + − − DU145 ++ ++ ++ ++ LNCap ++ ++ ++ + GBM ++ ++ ++ ++ SH-SY5Y ++ ++ ++ ++ CAL27 ++ ++ ++ + SCC-25 ++ ++ ++ ++ CNE ++ ++ ++ + RPMI 2650 ++ ++ + + HEp-2 ++ ++ ++ ++ TT ++ ++ ++ − SW579 ++ + − − J82 ++ + − − 5637 ++ ++ ++ ++ Daudi ++ ++ + − Raji ++ ++ + − hTERT-HPNE + − − − differentiated RG + − − − Hacat − − − − MRC-5 − − − − HFF-1 − − − − wpmy-1 − − − − HUVEC − − − − Note: “−” indicated that there was no significant difference in cell survival rate between virus treatment group and MOCK group; “+” indicated that after virus treatment, the number of cells was reduced, the survival rate was greater than 50% but was significantly different from that of MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group.
[0220] It can be seen from Table 2 that CVB1-WT had killing effect on most of the detected tumor cells. In particular, the virus had significant killing effects on colorectal cancer cell lines, gastric cancer cell lines, lung cancer cell lines, liver cancer cell lines, cervical cancer cell lines, endometrial cancer cell lines, pancreatic cancer cell lines, prostate cancer cell lines, nasopharyngeal cancer cell lines, tongue cancer cell lines, laryngeal cancer cell lines, glioma cell lines and neuroblastoma cell lines. On the other hand, the virus was substantially non-toxic to the non-tumor cell lines tested, including the human embryonic lung fibroblast cell line MRC-5, human foreskin fibroblast cell line HFF-1, human skin keratinocyte cell line HaCat, human prostate stromal cell line WPMY-1, and human umbilical vein endothelial cell line HUVEC, except that it had certain toxicity to human normal pancreatic ductal epithelial cell line hTERT-HPNE and the differentiated human liver progenitor cell line HepaRG at MOI=10.
[0221] It is particularly worth noting that although CVB1-WT and the wild-type Coxsackievirus B type 3 strain (CVB3-WT; GenBank database accession number: KY286529.1) reported to have certain killing activity on specific tumors, belong to Coxsackie viruses, the genome-wide nucleotide homology between the two was only 72.8%, and the nucleotide homology of coding region was only 71%, that was, they were two completely different viruses. In particular, the inventors found that CVB1 had a significantly superior tumor killing effect, and had killing activities on most of the detected tumor cells at least tens of times, or even hundreds of times, as compared with CVB3, by comparing the killing efficacies of CVB1-WT and CVB3-WT on different types of tumor cells (Table 3). It can be seen from this that CVB1 of the present invention can produce more potent anti-tumor activity at a relatively lower dose, which could greatly improve the safety of administration while ensuring the therapeutic efficacy, and thus is particularly suitable for anti-tumor treatment.
TABLE-US-00003 TABLE 3 Comparison of results of in vitro anti-tumor tests of CVB1-WT and CVB3-WT Potency CVB1-WT CVB3-WT multiple MOI EC50 MOI EC50 (EC50 Cell lines 1 0.1 0.01 (MOI) 1 0.1 0.01 (MOI) ratio) Lung cancer NCI-H1 ++ ++ + 0.02 ++ − − 0.97 48.5 cell line 975 A549 ++ ++ + 0.02 ++ + + 0.82 41 EBC-1 ++ ++ ++ <0.01 ++ ++ + 0.08 >8 NCI-H1 ++ ++ + 0.03 ++ + + 0.89 29.6 703 Esophageal TE-1 ++ ++ + 0.04 + − − 15.23 380.75 cancer cell line Ovarian CaOV3 ++ ++ − 0.03 ++ + − 0.78 26 cancer cell line Endometrial HEC-1- ++ ++ + 0.05 + − − 13.34 266.8 cancer cell A line Pancreatic Capan-2 ++ + − 0.08 − − − >10 >125 cancer AsPC-1 ++ ++ ++ <0.01 ++ + − 0.96 >96 cell line SW1990 ++ ++ + 0.02 ++ + − 0.82 41 CFPAC- ++ ++ + 0.03 + − − 25.71 857 1 Tongue CAL27 ++ ++ + 0.03 + − − 17.20 573.3 cancer cell SCC-25 ++ ++ ++ <0.01 ++ + − 0.78 >78 line Renal 786-O ++ + − 0.05 + − − 17.84 356.8 cancer cell line Prostate DU145 ++ ++ ++ <0.01 ++ ++ + 0.05 >5 cancer cell line Nasopharyngeal CNE ++ ++ + 0.03 ++ + − 0.88 29.33 cancer cell line Bladder 5637 ++ ++ ++ <0.01 ++ + − 0.53 53 cancer cell line Note: “−” indicated that there was no significant difference in cell survival rate between virus treatment group and MOCK group; “+” indicated that after virus treatment, the number of cells was reduced, the survival rate was greater than 50% but was significantly different from that of MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group; EC50, half of effective dose, referring to herein as the MOI of viruses by which the cell survival rate drops to 50%; potency multiple, referring to herein as the multiple of oncolytic efficacy of CVB1 and CVB3 on specific cells, that is, the EC50 ratio.
[0222] In addition, the results of in vitro anti-tumor experiments of CVB1-miR133&206T, CVB1-GM-CSF and CVB1-Anti-PD-1 showed that the above-mentioned modified forms of CVB1 all retained the killing effect of the parental strain of wild-type CVB1 on the detected tumor cells, and the significant killing effects of the parental strain of wild-type CVB1 on colorectal cancer cell lines, gastric cancer cell lines, lung cancer cell lines, liver cancer cell lines, cervical cancer cell lines, endometrial cancer cell lines, pancreatic cancer cell lines, prostate cancer cell lines, nasopharyngeal cancer cell lines, tongue cancer cell lines, laryngeal cancer cell lines, glioma cell lines, and neuroblastoma cell lines, in which the results of CCK-8 detection of the oncolytic activities to human colorectal cancer cell line SW480, human gastric cancer cell line AGS, human endometrial cancer cell line Ishikawa line and human glioma cell line GBM were shown in Table 4.
[0223] It is particularly worth noting that CVB1-HRV2 has significant killing activity to some tumor cells to which CVB1-WT showed weak killing activity, and brings a significant beneficial technical effect; in which the results of CCK-8 detection of the oncolytic activity to human thyroid cancer cell line SW579 were shown in Table 5.
TABLE-US-00004 TABLE 4 Results of in vitro anti-tumor tests of CVB1- miR133&206T, CVB1-GM-CSF and CVB1-Anti-PD-1 MOI Cell lines 10 1 0.1 0.01 CVB1-miR133&206T SW480 ++ ++ ++ ++ AGS ++ ++ ++ ++ Ishikawa ++ ++ ++ ++ GBM ++ ++ ++ ++ CVB1-GM-CSF SW480 ++ ++ ++ ++ AGS ++ ++ ++ ++ Ishikawa ++ ++ ++ ++ GBM ++ ++ ++ ++ CVB1-Anti-PD-1 SW480 ++ ++ ++ ++ AGS ++ ++ ++ ++ Ishikawa ++ ++ ++ ++ GBM ++ ++ ++ ++ Note: “−” indicated that there was no significant difference in cell survival rate between virus treatment group and MOCK group; “+” indicated that after virus treatment, the number of cells was reduced, the survival rate was greater than 50% but was significantly different from that of MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group.
TABLE-US-00005 TABLE 5 Comparison of results of in vitro oncolytic tests of CVB1-WT and CVB1-HRV2 on human thyroid cancer cell line SW579 MOI Cell lines 10 1 0.1 0.01 CVB1-WT ++ + − − CVB1-HRV2 ++ ++ ++ + Note: “−” indicated that there was no significant difference in cell survival rate between virus treatment group and MOCK group; “+” indicated that after virus treatment, the number of cells was reduced, the survival rate was greater than 50% but was significantly different from that of MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group.
[0224] 2.5 Serial Passaging of CVB1 for Adaptation
[0225] In this example, CVB1 was serially passaged for adaptation in a certain tumor cell to obtain a strain with enhanced killing activity on the tumor cell.
[0226] The wild-type enterovirus CVB1 was serially passaged for adaptation in human osteosarcoma cell line U2OS, human thyroid cancer cell line SW579 and human bladder cancer cell line J82, on which the oncolytic effect of CVB1 was not very significant. The specific methods were as follows:
[0227] One kind of the above tumor cells was evenly plated on a 10 cm cell culture plate, and the culture conditions were a corresponding cell culture medium containing 10% fetal bovine serum, glutamine, penicillin and streptomycin, 37° C., 5% CO.sub.2, saturated humidity. When the cell confluence reached 90% or more, the cell culture medium was replaced with serum-free cell culture medium, each plate was inoculated with 10.sup.7 TCID50 of CVB1 virus, and the culture environment was changed to 33° C., 5% CO.sub.2, saturated humidity. When CVB1 proliferated in tumor cells and caused CPE in the cells (after infection for up to 3 day), the cells and their culture supernatant were harvested. After freeze-thawing for three cycles, centrifugation was performed at 4000 rpm for 10 min at 4° C. The centrifugal supernatant was taken and added onto new tumor cells with a confluence of more than 90%, to complete one round of virus passage. The passage was repeated for more than 10 times in this way, and a part of the virus solution of each round of passage was taken out for titration of virus in RD cells, and the specific method referred to Example 2.3. Generally, the virus replication capacity would increase with the increase of generations, and when a relatively high infectious titer was reached and the virus replication was stable in the tumor cell, the adapted strain of CVB1 for the tumor cells was obtained.
[0228] Subsequently, the human tumor cells U2OS, SW579 or J82 were inoculated to 96-well plates at 10.sup.4 cells/well by the method of the in vitro anti-tumor experiment described in Example 2.4. After the cells adhered, the medium in each well was replaced with the corresponding cell culture medium free of serum, followed by incubation at 37° C. for 30 min, and then the serially passaged CVB1 strains adapted for each of the above kinds of cells were inoculated at MOIs of 10, 1, 0.1, and 0.01 (the viral titers were detected on RD cells), respectively. Subsequently, CPE of the cells were monitored daily by a microscope, and the cell survival rate was detected using CCK-8 method 72 hours after the infection and culture of viruses.
[0229] The results were shown in Table 6. After serial passaging of the wild-type CVB1 in a kind of tumor cells on which CVB1 had poor oncolytic effect, its killing activity on the tumor cell was significantly enhanced, indicating that the CVB1 adapted strain with enhanced oncolytic effect on the tumor cells could be obtained by the above-mentioned serial passaging method.
TABLE-US-00006 TABLE 6 Results of in vitro killing experiment of CVB1 on a tumor cell after serial passaging for adaptation in the tumor cell MOI Cell lines 10 1 0.1 0.01 U2OS ++ ++ ++ − SW579 ++ ++ + + J82 ++ ++ ++ + Note: “−” indicated that there was no significant difference in cell survival rate between virus treatment group and MOCK group; “+” indicated that after virus treatment, the number of cells was reduced, the survival rate was greater than 50% but was significantly different from that of MOCK group; “++” indicated that the cell survival rate after virus treatment was less than 50%, and was significantly different from that of the MOCK group.
[0230] 2.6 Evaluation of Oncolytic Effect of Genomic RNA of CVB1
[0231] In this example, a large amount of infectious live viruses of CVB1 could be produced by transfecting the purified genomic RNA of CVB1 into a certain kind of tumor cells, and thus kill the tumor cells.
[0232] The viral genomic RNA was first obtained by in vitro transcription, and this method could be found in, for example, Hadac E M, Kelly E J and Russell S J. Mol Ther, 2011, 19(6): 1041-1047. Specifically, the infectious cloning plasmid of wild-type CVB1 obtained in Example 1 was linearized, and the linearized plasmid was used as a template for in vitro transcription using MEGAscript™ T7 Transcription Kit (Thermo Fisher Scientific, AM1333) so as to produce a large amount of viral RNA. And the obtained viral RNA was purified using MEGAclear™ Transcription Clean-Up Kit (Thermo Fisher Scientific, AM1908) for next use. The RNA electropherogram of one sample was shown in
[0233] Subsequently, according to the method of the in vitro anti-tumor experiment described in Example 2.4, the human cervical cancer tumor cell line Hela was inoculated to a 24-well plate at 10.sup.5 cells/well. After the cells adhered, the medium in each well was replaced with a corresponding cell culture medium free of serum, followed by incubation at 37° C. for 30 min. Then Hela cells were transfected with purified virus RNA at 1 μg per well using transfection reagent Lipofectamine® 2000 (Thermo Fisher Scientific, 11668019), and the negative control group was transfected with irrelevant RNA nucleic acid molecules. Subsequently, CPE of the cells were monitored daily by a microscope.
[0234] The results showed that CPE began to appear in the Hela cells transfected with genomic RNA of CVB1 about 8 hours after transfection, and then the cytopathy gradually increased. After 48 hours, the survival rate was measured using the CCK8 method, the Hela cells had almost all died and lysed. And the micrographs of Hela cells at 0 and 48 hours after infection were shown in
Example 3: In Vivo Anti-Tumor Experiment of CVB1 and Modified Forms Thereof
[0235] 3.1 Viruses, Cell Lines and Laboratory Animals
[0236] (1) Viruses: In this example, the CVB1-WT (SEQ ID NO: 12), CVB1-HRV2 (SEQ ID NO: 13), CVB1-miR133&206T (SEQ ID NO: 14), CVB1-GM-CSF (SEQ ID NO: 15) and CVB1-Anti-PD-1 (SEQ ID NO: 16) provided in Example 1 were used. For the virus culture and virus titer determination methods, see Examples 2.2 and 2.3, respectively.
[0237] (2) Cell lines: human breast cancer cell line BcaP37 (CCTCC deposit number: GDC206), human non-small cell lung cancer cell lines A549 (ATCC® Number: CCL-185™) and SPC-A-1 (CCTCC deposit number: GDC050), human Burkitt's lymphoma cell line Raji (ATCC® Number: CCL-86™), human endometrial cancer cell lines Ishikawa (ECACC No. 99040201) and HEC-1-B (ATCC® Number: HTB-113™), human cervical cancer cell lines Hela (ATCC® Number: CCL-2™) and C-33A (ATCC® Number: HTB-31™), and human glioma cell line GBM (primary tumor cell line isolated from patient tumor tissue). Except that Raji was cultured using RPMI-1640 medium and C-33A was cultured using MEM medium, the above cells were cultured using DMEM medium, and the above mediums were added with 10% fetal bovine serum, glutamine and penicillin-streptomycin. All the above cells were cultured under standard conditions of 37° C. and 5% CO.sub.2.
[0238] (3) Laboratory animals: 6-8-week-old female C.B17 SCID mice were from Shanghai Silaike Experimental Animal Co., Ltd.; according to the protocol approved by Experimental Animal Center and Ethics Committee, Xiamen University, the mice were raised under SPF conditions.
[0239] 3.2 In Vivo Anti-Tumor Experiments of Viruses
[0240] The tumor cells used for subcutaneous tumor formation in SCID mice were digested with 0.01% trypsin, and then resuspended into a single cell suspension using cell culture medium containing 10% fetal bovine serum. The cell density of the suspension was counted. The cells were precipitated by centrifugation under 1000 g for 3 min, and then the cells were resuspended with an appropriate volume of PBS to reach a concentration of about 10.sup.6-10.sup.7 cells/100 μl PBS. The tumor cells were subcutaneously inoculated in the back of SCID mice at 10.sup.6-10.sup.7 cells/100 μl PBS/site with a syringe. When the tumor cells formed a tumor mass of approximately 100 mm.sup.3 under the skin of SCID mice after about 14-21 days, the tumor-bearing SCID mice were randomly divided into experimental groups (administrated with CVB1-WT, CVB1-HRV2, CVB1-miR133&206T, CVB1-GM-CSF or CVB1-Anti-PD-1) and negative control group, with 4 animals per group (n=4). Oncolytic virus (CVB1-WT, CVB1-HRV2, CVB1-miR133&206T, CVB1-GM-CSF or CVB1-Anti-PD-1) at 10.sup.6 TCID50/100 μl serum-free medium/tumor mass or equivalent amount of serum-free medium were intratumorally injected every two days, for a total of 5 treatments. The tumor size was measured with a vernier caliper and recorded every two days, and the method for calculating the tumor size was:
Tumor size (mm.sup.3)=tumor length value×(tumor width value)/2.
[0241] The treatment results of CVB1-WT on the above six tumors were shown in
[0242]
[0243] Although the specific embodiments of the present invention have been described in detail, those skilled in the art will understand that various modifications and changes can be made to the details based on all the teachings that have been published, and these changes are within the scope of the present invention. The entirety of the invention is given by the appended claims and any equivalents thereof